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ONTOLOGY REPORT - ANNOTATIONS


Term:neural nucleus development
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Accession:GO:0048857 term browser browse the term
Definition:The biological process whose specific outcome is the progression of a neural nucleus from its initial condition to its mature state. A neural nucleus is an anatomical structure consisting of a discrete aggregate of neuronal soma.


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neural nucleus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hoxb2 homeobox B2 acts_upstream_of_or_within IMP (MGI:85074|PMID:9012503) MGI PMID:9012503 MGI:85074 NCBI chr11:96,351,632...96,354,020
Ensembl chr11:96,350,525...96,354,012
JBrowse link
caudate nucleus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxp2 forkhead box P2 involved_in ISO (PMID:11872605) UniProt PMID:11872605 NCBI chr 6:14,901,349...15,441,977
Ensembl chr 6:14,901,349...15,441,977
JBrowse link
cochlear nucleus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl2 B cell leukemia/lymphoma 2 acts_upstream_of_or_within IMP (MGI:1891561|PMID:11027399) MGI PMID:11027399 MGI:1891561 NCBI chr 1:106,538,176...106,714,290
Ensembl chr 1:106,538,178...106,714,274
JBrowse link
G Scrib scribbled planar cell polarity acts_upstream_of_or_within IGI (MGI:4439427|PMID:20215345) MGI PMID:20215345 MGI:4439427 NCBI chr15:76,047,162...76,069,784
Ensembl chr15:76,047,158...76,069,784
JBrowse link
G Sec24b Sec24 related gene family, member B (S. cerevisiae) acts_upstream_of_or_within IGI
IMP
(MGI:4439427|PMID:20215345) MGI PMID:20215345 MGI:4439427 NCBI chr 3:129,982,759...130,061,599
Ensembl chr 3:129,982,759...130,061,553
JBrowse link
G Slc4a7 solute carrier family 4, sodium bicarbonate cotransporter, member 7 acts_upstream_of_or_within IMP (MGI:2680888|PMID:12808454) MGI PMID:12808454 MGI:2680888 NCBI chr14:14,703,011...14,799,944
Ensembl chr14:14,702,279...14,799,940
JBrowse link
facial nucleus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hoxa1 homeobox A1 acts_upstream_of_or_within IMP (MGI:62658|PMID:8102800) MGI PMID:8102800 MGI:62658 NCBI chr 6:52,155,367...52,160,007
Ensembl chr 6:52,155,590...52,158,317
JBrowse link
G Hoxb1 homeobox B1 acts_upstream_of_or_within IMP (MGI:83677|PMID:8898234) MGI PMID:8898234 MGI:83677 NCBI chr11:96,365,746...96,368,254
Ensembl chr11:96,365,752...96,368,256
JBrowse link
globus pallidus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arx aristaless related homeobox acts_upstream_of_or_within IMP (MGI:3709215|PMID:17460091) MGI PMID:17460091 MGI:3709215 NCBI chr  X:93,286,507...93,298,357
Ensembl chr  X:93,286,445...93,298,357
JBrowse link
G Kcnc1 potassium voltage gated channel, Shaw-related subfamily, member 1 ISO RGD PMID:10482766 RGD:9685780 NCBI chr 7:46,396,219...46,438,706
Ensembl chr 7:46,396,497...46,438,704
JBrowse link
G Kcnc2 potassium voltage gated channel, Shaw-related subfamily, member 2 ISO RGD PMID:10482766 RGD:9685780 NCBI chr10:112,269,898...112,466,304
Ensembl chr10:112,271,121...112,467,024
JBrowse link
G Nkx2-1 NK2 homeobox 1 involved_in
acts_upstream_of_or_within
ISO
IMP
(MGI:4437145|PMID:20181579) MGI PMID:20181579 GO_REF:0000096 MGI:4437145 MGI:4834177 NCBI chr12:56,531,935...56,536,908
Ensembl chr12:56,531,958...56,536,908
JBrowse link
lateral geniculate nucleus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chrnb2 cholinergic receptor, nicotinic, beta polypeptide 2 (neuronal) acts_upstream_of_or_within IMP (MGI:3721829|PMID:12097474) MGI PMID:12097474 MGI:3721829 NCBI chr 3:89,753,448...89,764,632
Ensembl chr 3:89,746,195...89,764,632
JBrowse link
locus ceruleus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Phox2a paired-like homeobox 2a acts_upstream_of_or_within IMP (MGI:4849589|PMID:21068058)
(MGI:86465|PMID:9115735)
MGI PMID:9115735 PMID:21068058 MGI:4849589 MGI:86465 NCBI chr 7:101,818,313...101,822,726
Ensembl chr 7:101,818,313...101,822,726
JBrowse link
nucleus accumbens development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a3 aldehyde dehydrogenase family 1, subfamily A3 acts_upstream_of_or_within IMP (MGI:3701419|PMID:17207476) MGI PMID:17207476 MGI:3701419 NCBI chr 7:66,390,892...66,427,477
Ensembl chr 7:66,390,890...66,427,517
JBrowse link
principal sensory nucleus of trigeminal nerve development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kirrel3 kirre like nephrin family adhesion molecule 3 acts_upstream_of_or_within IMP (MGI:4949565|PMID:21241806) MGI PMID:21241806 MGI:4949565 NCBI chr 9:34,485,853...35,040,807
Ensembl chr 9:34,485,894...35,036,716
JBrowse link
G Mecp2 methyl CpG binding protein 2 ISO RGD PMID:12605461 RGD:12790706 NCBI chr  X:74,026,592...74,085,690
Ensembl chr  X:74,026,592...74,135,363
JBrowse link
G Nfib nuclear factor I/B involved_in IMP (MGI:5284754|PMID:19107796) UniProt PMID:19107796 MGI:5284754 NCBI chr 4:82,290,173...82,506,751
Ensembl chr 4:82,290,173...82,705,750
JBrowse link
putamen development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxp2 forkhead box P2 involved_in ISO (PMID:11872605) UniProt PMID:11872605 NCBI chr 6:14,901,349...15,441,977
Ensembl chr 6:14,901,349...15,441,977
JBrowse link
retrotrapezoid nucleus neuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Phox2b paired-like homeobox 2b involved_in IMP (MGI:4418003|PMID:19940179) BHF-UCL PMID:19940179 MGI:4418003 NCBI chr 5:67,094,397...67,099,126
Ensembl chr 5:67,094,399...67,099,301
JBrowse link
substantia nigra development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actb actin, beta involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 5:142,903,115...142,907,976
Ensembl chr 5:142,903,115...142,906,754
JBrowse link
G Atp5j ATP synthase, H+ transporting, mitochondrial F0 complex, subunit F involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr16:84,827,871...84,835,857
Ensembl chr16:84,827,866...84,835,625
JBrowse link
G Atp5pb ATP synthase peripheral stalk-membrane subunit b involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 3:105,942,698...105,959,263
Ensembl chr 3:105,942,698...105,960,099
JBrowse link
G Basp1 brain abundant, membrane attached signal protein 1 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr15:25,363,277...25,413,764
Ensembl chr15:25,363,277...25,413,764
JBrowse link
G Calm1 calmodulin 1 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr12:100,199,435...100,209,824
Ensembl chr12:100,199,435...100,209,814
JBrowse link
G Calm2 calmodulin 2 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr17:87,433,401...87,446,935
Ensembl chr12:100,199,435...100,209,814
Ensembl chr17:100,199,435...100,209,814
JBrowse link
G Calm3 calmodulin 3 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 7:16,915,379...16,924,032
Ensembl chr 7:16,915,379...16,924,114
JBrowse link
G Ccdc14 coiled-coil domain containing 14 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr16:34,690,557...34,725,204
Ensembl chr16:34,690,616...34,725,202
JBrowse link
G Cdc42 cell division cycle 42 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 4:137,319,696...137,357,759
Ensembl chr 4:137,319,696...137,357,720
JBrowse link
G Ckb creatine kinase, brain involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr12:111,669,355...111,672,338
Ensembl chr12:111,669,361...111,672,338
JBrowse link
G Cnp 2',3'-cyclic nucleotide 3' phosphodiesterase involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr11:100,574,909...100,591,875
Ensembl chr11:100,574,904...100,591,729
JBrowse link
G Cox6b1 cytochrome c oxidase, subunit 6B1 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 7:30,616,971...30,626,114
Ensembl chr 7:30,616,861...30,626,151
JBrowse link
G Dynll1 dynein light chain LC8-type 1 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 5:115,297,110...115,300,990
Ensembl chr 5:115,297,110...115,300,999
JBrowse link
G Eno3 enolase 3, beta muscle involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr11:70,653,125...70,662,513
Ensembl chr11:70,657,202...70,662,513
JBrowse link
G Fgf2 fibroblast growth factor 2 acts_upstream_of_or_within IMP (MGI:3696489|PMID:17234579) MGI PMID:17234579 MGI:3696489 NCBI chr 3:37,348,477...37,410,106
Ensembl chr 3:37,348,346...37,410,108
JBrowse link
G Fgf9 fibroblast growth factor 9 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr14:58,070,671...58,112,854
Ensembl chr14:58,070,547...58,112,720
JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 acts_upstream_of_or_within IMP (MGI:3696489|PMID:17234579) MGI PMID:17234579 MGI:3696489 NCBI chr 5:33,721,724...33,737,068
Ensembl chr 5:33,721,674...33,737,068
JBrowse link
G G6pdx glucose-6-phosphate dehydrogenase X-linked involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr  X:74,409,483...74,428,880
Ensembl chr  X:74,409,483...74,429,194
JBrowse link
G Glud1 glutamate dehydrogenase 1 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr14:34,310,727...34,345,033
Ensembl chr14:34,310,727...34,345,265
JBrowse link
G Gnb4 guanine nucleotide binding protein (G protein), beta 4 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 3:32,578,587...32,616,673
Ensembl chr 3:32,580,332...32,616,585
JBrowse link
G Hspa5 heat shock protein 5 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 2:34,772,090...34,776,529
Ensembl chr 2:34,771,970...34,777,547
JBrowse link
G Ina internexin neuronal intermediate filament protein, alpha involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr19:47,014,681...47,025,327
Ensembl chr19:47,014,698...47,025,327
JBrowse link
G Ldha lactate dehydrogenase A involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 7:46,842,274...46,855,627
Ensembl chr 7:46,841,475...46,855,627
JBrowse link
G Mag myelin-associated glycoprotein involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 7:30,899,175...30,914,922
Ensembl chr 7:30,899,176...30,914,873
JBrowse link
G Maob monoamine oxidase B involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr  X:16,709,281...16,817,366
Ensembl chr  X:16,709,282...16,817,366
JBrowse link
G Mapkap1 mitogen-activated protein kinase associated protein 1 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 2:34,406,771...34,624,958
Ensembl chr 2:34,406,771...34,624,950
JBrowse link
G Mbp myelin basic protein involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr18:82,475,091...82,585,637
Ensembl chr18:82,475,146...82,585,637
JBrowse link
G Ndrg2 N-myc downstream regulated gene 2 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr14:51,905,271...51,914,004
Ensembl chr14:51,905,271...51,914,158
JBrowse link
G Ndufs3 NADH:ubiquinone oxidoreductase core subunit S3 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 2:90,894,627...90,904,721
Ensembl chr 2:90,894,634...90,904,827
JBrowse link
G Padi2 peptidyl arginine deiminase, type II involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 4:140,906,336...140,952,586
Ensembl chr 4:140,906,344...140,952,586
JBrowse link
G Plp1 proteolipid protein (myelin) 1 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr  X:136,820,148...136,838,582
Ensembl chr  X:136,822,671...136,839,733
JBrowse link
G Rad1 RAD1 checkpoint DNA exonuclease involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr15:10,486,018...10,499,063
Ensembl chr15:10,486,018...10,499,063
JBrowse link
G Rhoa ras homolog family member A involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 9:108,306,160...108,337,943
Ensembl chr 9:108,306,129...108,337,934
JBrowse link
G S100a1 S100 calcium binding protein A1 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 3:90,511,034...90,514,330
Ensembl chr 3:90,511,034...90,514,392
JBrowse link
G Sec16a SEC16 homolog A, endoplasmic reticulum export factor involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 2:26,409,431...26,446,293
Ensembl chr 2:26,409,431...26,445,216
JBrowse link
G Sirt2 sirtuin 2 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 7:28,766,752...28,788,665
Ensembl chr 7:28,766,735...28,788,661
JBrowse link
G Suds3 suppressor of defective silencing 3 homolog (S. cerevisiae) involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 5:117,091,678...117,115,993
Ensembl chr 5:117,091,680...117,116,113
JBrowse link
G Syngr3 synaptogyrin 3 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr17:24,685,092...24,689,949
Ensembl chr17:24,685,092...24,689,955
JBrowse link
G Sypl2 synaptophysin-like 2 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 3:108,210,410...108,226,989
Ensembl chr 3:108,211,472...108,226,648
JBrowse link
G Ttbk1 tau tubulin kinase 1 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr17:46,442,448...46,487,675
Ensembl chr17:46,442,448...46,487,675
JBrowse link
G Ywhae tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr11:75,732,887...75,765,841
Ensembl chr11:75,732,869...75,765,845
JBrowse link
G Ywhah tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta polypeptide involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 5:33,018,816...33,027,966
Ensembl chr 5:33,018,816...33,027,966
JBrowse link
G Ywhaq tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr12:21,390,329...21,417,436
Ensembl chr12:21,390,071...21,417,637
JBrowse link
G Zfp148 zinc finger protein 148 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr16:33,380,775...33,503,903
Ensembl chr16:33,380,836...33,504,363
JBrowse link
subthalamic nucleus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pitx2 paired-like homeodomain transcription factor 2 acts_upstream_of_or_within IMP (MGI:3790896|PMID:18206388) MGI PMID:18206388 MGI:3790896 NCBI chr 3:129,199,878...129,219,594
Ensembl chr 3:129,199,878...129,219,591
JBrowse link
superior olivary nucleus maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk5r1 cyclin-dependent kinase 5, regulatory subunit 1 (p35) acts_upstream_of_or_within IGI (MGI:2149271|PMID:11517264) MGI PMID:11517264 MGI:2149271 NCBI chr11:80,477,023...80,481,184
Ensembl chr11:80,477,023...80,481,184
JBrowse link
G Cdk5r2 cyclin-dependent kinase 5, regulatory subunit 2 (p39) acts_upstream_of_or_within IGI (MGI:2149271|PMID:11517264) MGI PMID:11517264 MGI:2149271 NCBI chr 1:74,855,029...74,857,732
Ensembl chr 1:74,854,934...74,857,732
JBrowse link
vestibular nucleus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl1 achaete-scute family bHLH transcription factor 1 acts_upstream_of_or_within IMP (MGI:3621705|PMID:12885554) MGI PMID:12885554 MGI:3621705 NCBI chr10:87,490,819...87,493,660
Ensembl chr10:87,490,819...87,493,660
JBrowse link
G Cacna1a calcium channel, voltage-dependent, P/Q type, alpha 1A subunit acts_upstream_of_or_within IMP (MGI:77774|PMID:8719615) MGI PMID:8719615 MGI:77774 NCBI chr 8:84,338,631...84,640,251
Ensembl chr 8:84,338,639...84,640,246
JBrowse link
G Kcne1 potassium voltage-gated channel, Isk-related subfamily, member 1 involved_in IMP (MGI:3625254|PMID:11223304) MGI PMID:11223304 MGI:3625254 NCBI chr16:92,346,001...92,359,468
Ensembl chr16:92,345,982...92,359,468
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28596
    developmental process 7074
      anatomical structure development 6543
        neural nucleus development 69
          abducens nucleus development 0
          caudate nucleus development 1
          cochlear nucleus development + 4
          dentate nucleus development 0
          dorsal motor nucleus of vagus nerve development + 0
          emboliform nucleus development 0
          facial nucleus development 2
          fastigial nucleus development 0
          globose nucleus development 0
          globus pallidus development 4
          hypoglossal nucleus development 0
          inferior olivary nucleus development + 0
          inferior raphe nucleus development 0
          inferior reticular formation development 0
          lateral geniculate nucleus development 1
          lateral reticular nucleus development 0
          locus ceruleus development + 1
          nucleus accumbens development 1
          nucleus ambiguus development 0
          putamen development 1
          retrotrapezoid nucleus development + 1
          salivary nucleus development + 0
          solitary nucleus development 0
          substantia nigra development 44
          subthalamic nucleus development 1
          superior olivary nucleus development + 2
          superior raphe nucleus development 0
          trigeminal motor nucleus development 0
          trigeminal sensory nucleus development + 3
          vestibular nucleus development 3
paths to the root