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ONTOLOGY REPORT - ANNOTATIONS


Term:neural nucleus development
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Accession:GO:0048857 term browser browse the term
Definition:The biological process whose specific outcome is the progression of a neural nucleus from its initial condition to its mature state. A neural nucleus is an anatomical structure consisting of a discrete aggregate of neuronal soma.


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neural nucleus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HOXB2 homeobox B2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:85074|PMID:9012503) Ensembl
MGI
PMID:9012503 GO_REF:0000107 MGI:85074 NCBI chr17:48,542,655...48,545,109
Ensembl chr17:48,540,894...48,544,989
Ensembl chr17:48,540,894...48,544,989
JBrowse link
caudate nucleus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FOXP2 forkhead box P2 involved_in IMP (PMID:11872605) UniProt PMID:11872605 NCBI chr 7:114,086,327...114,693,765
Ensembl chr 7:114,086,327...114,693,772
JBrowse link
cochlear nucleus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCL2 BCL2 apoptosis regulator involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1891561|PMID:11027399) Ensembl
MGI
PMID:11027399 GO_REF:0000107 MGI:1891561 NCBI chr18:63,123,346...63,320,280
Ensembl chr18:63,123,346...63,320,128
JBrowse link
G SCRIB scribble planar cell polarity protein involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4439427|PMID:20215345) Ensembl
MGI
PMID:20215345 GO_REF:0000107 MGI:4439427 NCBI chr 8:143,790,925...143,815,773
Ensembl chr 8:143,790,920...143,815,773
JBrowse link
G SEC24B SEC24 homolog B, COPII coat complex component involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4439427|PMID:20215345) Ensembl
MGI
PMID:20215345 GO_REF:0000107 MGI:4439427 NCBI chr 4:109,433,815...109,540,896
Ensembl chr 4:109,433,772...109,540,896
JBrowse link
G SLC4A7 solute carrier family 4 member 7 acts_upstream_of_or_within ISO (MGI:2680888|PMID:12808454) MGI PMID:12808454 MGI:2680888 NCBI chr 3:27,372,721...27,484,420
Ensembl chr 3:27,372,721...27,484,420
JBrowse link
facial nucleus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HOXA1 homeobox A1 acts_upstream_of_or_within ISO (MGI:62658|PMID:8102800) MGI PMID:8102800 MGI:62658 NCBI chr 7:27,092,993...27,096,000
Ensembl chr 7:27,093,313...27,095,996
Ensembl chr 7:27,093,313...27,095,996
JBrowse link
G HOXB1 homeobox B1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:83677|PMID:8898234) Ensembl
MGI
PMID:8898234 GO_REF:0000107 MGI:83677 NCBI chr17:48,528,526...48,531,011
Ensembl chr17:48,528,526...48,531,011
JBrowse link
globus pallidus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARX aristaless related homeobox involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3709215|PMID:17460091) Ensembl
MGI
PMID:17460091 GO_REF:0000107 MGI:3709215 NCBI chr  X:25,003,694...25,015,965
Ensembl chr  X:25,003,694...25,016,420
JBrowse link
G KCNC1 potassium voltage-gated channel subfamily C member 1 involved_in ISO
IEA
RGD
Ensembl
PMID:10482766 GO_REF:0000107 RGD:9685780 NCBI chr11:17,734,781...17,783,057
Ensembl chr11:17,734,774...17,856,804
JBrowse link
G KCNC2 potassium voltage-gated channel subfamily C member 2 involved_in IEA
ISO
Ensembl
RGD
PMID:10482766 GO_REF:0000107 RGD:9685780 NCBI chr12:75,040,078...75,209,839
Ensembl chr12:75,040,077...75,209,868
Ensembl chr12:75,040,077...75,209,868
JBrowse link
G NKX2-1 NK2 homeobox 1 involved_in
acts_upstream_of_or_within
IMP
ISO
(PMID:11854319)
(MGI:4437145|PMID:20181579)
UniProt
MGI
PMID:11854319 PMID:20181579 MGI:4437145 NCBI chr14:36,516,397...36,520,232
Ensembl chr14:36,516,392...36,521,149
JBrowse link
lateral geniculate nucleus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHRNB2 cholinergic receptor nicotinic beta 2 subunit involved_in
acts_upstream_of_or_within
ISS
ISO
(MGI:3721829|PMID:12097474) UniProt
MGI
PMID:12097474 GO_REF:0000024 MGI:3721829 NCBI chr 1:154,567,778...154,584,708
Ensembl chr 1:154,567,778...154,580,013
JBrowse link
locus ceruleus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PHOX2A paired like homeobox 2A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:86465|PMID:9115735)
(MGI:4849589|PMID:21068058)
Ensembl
MGI
PMID:9115735 PMID:21068058 GO_REF:0000107 MGI:4849589 MGI:86465 NCBI chr11:72,239,077...72,244,176
Ensembl chr11:72,239,077...72,245,664
JBrowse link
nucleus accumbens development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A3 aldehyde dehydrogenase 1 family member A3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3701419|PMID:17207476) Ensembl
MGI
PMID:17207476 GO_REF:0000107 MGI:3701419 NCBI chr15:100,879,831...100,916,626
Ensembl chr15:100,877,714...100,916,626
JBrowse link
principal sensory nucleus of trigeminal nerve development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G KIRREL3 kirre like nephrin family adhesion molecule 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4949565|PMID:21241806) Ensembl
MGI
PMID:21241806 GO_REF:0000107 MGI:4949565 NCBI chr11:126,423,358...127,003,460
Ensembl chr11:126,423,358...127,003,460
JBrowse link
G MECP2 methyl-CpG binding protein 2 ISO RGD PMID:12605461 RGD:12790706 NCBI chr  X:154,021,573...154,097,717
Ensembl chr  X:154,021,573...154,137,103
JBrowse link
G NFIB nuclear factor I B involved_in ISS UniProt GO_REF:0000024 NCBI chr 9:14,081,843...14,532,077
Ensembl chr 9:14,081,843...14,398,983
JBrowse link
putamen development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FOXP2 forkhead box P2 involved_in IMP (PMID:11872605) UniProt PMID:11872605 NCBI chr 7:114,086,327...114,693,765
Ensembl chr 7:114,086,327...114,693,772
JBrowse link
retrotrapezoid nucleus neuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PHOX2B paired like homeobox 2B involved_in ISS BHF-UCL GO_REF:0000024 NCBI chr 4:41,744,082...41,748,725
Ensembl chr 4:41,744,082...41,748,725
Ensembl chr 4:41,744,082...41,748,725
JBrowse link
substantia nigra development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACTB actin beta involved_in HEP (PMID:22926577) UniProt PMID:22926577 NCBI chr 7:5,527,148...5,530,601
Ensembl chr 7:5,526,409...5,563,902
Ensembl chr 7:5,526,409...5,563,902
JBrowse link
G ATP5PB ATP synthase peripheral stalk-membrane subunit b involved_in HEP (PMID:22926577) UniProt PMID:22926577 NCBI chr 1:111,449,464...111,462,773
Ensembl chr 1:111,448,864...111,462,773
JBrowse link
G ATP5PF ATP synthase peripheral stalk subunit F6 involved_in HEP (PMID:22926577) UniProt PMID:22926577 NCBI chr21:25,724,500...25,735,653
Ensembl chr21:25,716,503...25,735,673
JBrowse link
G BASP1 brain abundant membrane attached signal protein 1 involved_in HEP (PMID:22926577) UniProt PMID:22926577 NCBI chr 5:17,216,823...17,276,834
Ensembl chr 5:17,065,598...17,276,843
JBrowse link
G CALM1 calmodulin 1 involved_in HEP (PMID:22926577) UniProt PMID:22926577 NCBI chr14:90,396,502...90,408,268
Ensembl chr14:90,396,502...90,408,268
JBrowse link
G CALM2 calmodulin 2 involved_in HEP (PMID:22926577) UniProt PMID:22926577 NCBI chr 2:47,160,082...47,176,936
Ensembl chr 2:47,160,083...47,176,921
JBrowse link
G CALM3 calmodulin 3 involved_in HEP (PMID:22926577) UniProt PMID:22926577 NCBI chr19:46,601,074...46,610,782
Ensembl chr19:46,601,074...46,610,782
JBrowse link
G CASP5 caspase 5 involved_in HEP (PMID:22926577) UniProt PMID:22926577 NCBI chr11:104,994,243...105,023,902
Ensembl chr11:104,994,235...105,023,168
JBrowse link
G CCDC14 coiled-coil domain containing 14 involved_in HEP (PMID:22926577) UniProt PMID:22926577 NCBI chr 3:123,887,383...123,961,412
Ensembl chr 3:123,897,305...123,961,408
JBrowse link
G CDC42 cell division cycle 42 involved_in HEP (PMID:22926577) UniProt PMID:22926577 NCBI chr 1:22,052,709...22,101,360
Ensembl chr 1:22,025,511...22,101,360
JBrowse link
G CKB creatine kinase B involved_in HEP (PMID:22926577) UniProt PMID:22926577 NCBI chr14:103,519,667...103,522,833
Ensembl chr14:103,519,667...103,522,833
JBrowse link
G CNP 2',3'-cyclic nucleotide 3' phosphodiesterase involved_in HEP (PMID:22926577) UniProt PMID:22926577 NCBI chr17:41,966,795...41,977,740
Ensembl chr17:41,966,763...41,977,740
JBrowse link
G COX6B1 cytochrome c oxidase subunit 6B1 involved_in HEP (PMID:22926577) UniProt PMID:22926577 NCBI chr19:35,648,323...35,658,782
Ensembl chr19:35,648,323...35,658,782
JBrowse link
G CU639417.1 histone H2B type F-S-like involved_in HEP (PMID:22926577) UniProt PMID:22926577 NCBI chr21:5,972,922...5,973,355
Ensembl chr21:5,972,924...5,973,383
JBrowse link
G DYNLL1 dynein light chain LC8-type 1 involved_in HEP (PMID:22926577) UniProt PMID:22926577 NCBI chr12:120,469,842...120,498,493
Ensembl chr12:120,469,850...120,498,493
JBrowse link
G ENO3 enolase 3 involved_in HEP (PMID:22926577) UniProt PMID:22926577 NCBI chr17:4,949,182...4,957,131
Ensembl chr17:4,948,092...4,957,131
JBrowse link
G FGF2 fibroblast growth factor 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3696489|PMID:17234579) MGI
Ensembl
PMID:17234579 GO_REF:0000107 MGI:3696489 NCBI chr 4:122,826,708...122,898,236
Ensembl chr 4:122,826,708...122,898,236
JBrowse link
G FGF9 fibroblast growth factor 9 involved_in HEP (PMID:22926577) UniProt PMID:22926577 NCBI chr13:21,671,073...21,704,501
Ensembl chr13:21,671,073...21,704,498
JBrowse link
G FGFR3 fibroblast growth factor receptor 3 acts_upstream_of_or_within ISO (MGI:3696489|PMID:17234579) MGI PMID:17234579 MGI:3696489 NCBI chr 4:1,793,293...1,808,872
Ensembl chr 4:1,793,293...1,808,872
JBrowse link
G G6PD glucose-6-phosphate dehydrogenase involved_in HEP (PMID:22926577) UniProt PMID:22926577 NCBI chr  X:154,531,390...154,547,569
Ensembl chr  X:154,531,391...154,547,572
JBrowse link
G GLUD1 glutamate dehydrogenase 1 involved_in HEP (PMID:22926577) UniProt PMID:22926577 NCBI chr10:87,050,202...87,094,843
Ensembl chr10:87,050,202...87,094,843
JBrowse link
G GNB4 G protein subunit beta 4 involved_in HEP (PMID:22926577) UniProt PMID:22926577 NCBI chr 3:179,396,088...179,451,470
Ensembl chr 3:179,396,088...179,451,476
JBrowse link
G H2BS1 H2B.S histone 1 involved_in HEP (PMID:22926577) UniProt PMID:22926577 NCBI chr21:43,565,182...43,565,648
Ensembl chr21:43,565,182...43,565,648
JBrowse link
G HSPA5 heat shock protein family A (Hsp70) member 5 involved_in HEP (PMID:22926577) UniProt PMID:22926577 NCBI chr 9:125,234,853...125,241,343
Ensembl chr 9:125,234,853...125,241,343
Ensembl chr 9:125,234,853...125,241,343
JBrowse link
G INA internexin neuronal intermediate filament protein alpha involved_in HEP (PMID:22926577) UniProt PMID:22926577 NCBI chr10:103,277,138...103,290,346
Ensembl chr10:103,277,138...103,290,346
JBrowse link
G LDHA lactate dehydrogenase A involved_in HEP (PMID:22926577) UniProt PMID:22926577 NCBI chr11:18,394,563...18,408,425
Ensembl chr11:18,394,560...18,408,425
JBrowse link
G MAG myelin associated glycoprotein involved_in HEP (PMID:22926577) UniProt PMID:22926577 NCBI chr19:35,292,161...35,313,807
Ensembl chr19:35,292,125...35,313,807
JBrowse link
G MAOB monoamine oxidase B involved_in HEP (PMID:22926577) UniProt PMID:22926577 NCBI chr  X:43,766,610...43,882,450
Ensembl chr  X:43,766,610...43,882,450
JBrowse link
G MAPKAP1 MAPK associated protein 1 involved_in HEP (PMID:22926577) UniProt PMID:22926577 NCBI chr 9:125,437,394...125,707,208
Ensembl chr 9:125,437,393...125,707,234
JBrowse link
G MBP myelin basic protein involved_in HEP (PMID:22926577) UniProt PMID:22926577 NCBI chr18:76,978,833...77,133,708
Ensembl chr18:76,978,827...77,133,683
JBrowse link
G NDRG2 NDRG family member 2 involved_in HEP (PMID:22926577) UniProt PMID:22926577 NCBI chr14:21,016,763...21,070,872
Ensembl chr14:21,016,763...21,070,872
JBrowse link
G NDUFS3 NADH:ubiquinone oxidoreductase core subunit S3 involved_in HEP (PMID:22926577) UniProt PMID:22926577 NCBI chr11:47,579,074...47,584,562
Ensembl chr11:47,565,336...47,584,562
JBrowse link
G PADI2 peptidyl arginine deiminase 2 involved_in HEP (PMID:22926577) UniProt PMID:22926577 NCBI chr 1:17,066,761...17,119,453
Ensembl chr 1:17,066,761...17,119,451
JBrowse link
G PLP1 proteolipid protein 1 involved_in HEP (PMID:22926577) UniProt PMID:22926577 NCBI chr  X:103,776,506...103,792,619
Ensembl chr  X:103,773,718...103,792,619
JBrowse link
G POTEE POTE ankyrin domain family member E involved_in HEP (PMID:22926577) UniProt PMID:22926577 NCBI chr 2:131,209,536...131,265,278
Ensembl chr 2:131,218,067...131,265,278
Ensembl chr 2:131,218,067...131,265,278
JBrowse link
G RAD1 RAD1 checkpoint DNA exonuclease involved_in HEP (PMID:22926577) UniProt PMID:22926577 NCBI chr 5:34,905,260...34,915,504
Ensembl chr 5:34,905,260...34,918,989
JBrowse link
G RHOA ras homolog family member A involved_in HEP (PMID:22926577) UniProt PMID:22926577 NCBI chr 3:49,359,145...49,411,976
Ensembl chr 3:49,359,145...49,412,998
Ensembl chr 3:49,359,145...49,412,998
JBrowse link
G S100A1 S100 calcium binding protein A1 involved_in HEP (PMID:22926577) UniProt PMID:22926577 NCBI chr 1:153,628,434...153,632,039
Ensembl chr 1:153,627,926...153,632,039
JBrowse link
G SEC16A SEC16 homolog A, endoplasmic reticulum export factor involved_in HEP (PMID:22926577) UniProt PMID:22926577 NCBI chr 9:136,440,096...136,484,552
Ensembl chr 9:136,440,096...136,483,759
JBrowse link
G SIRT2 sirtuin 2 involved_in HEP (PMID:22926577) UniProt PMID:22926577 NCBI chr19:38,878,555...38,899,733
Ensembl chr19:38,878,555...38,899,862
JBrowse link
G SUDS3 SDS3 homolog, SIN3A corepressor complex component involved_in HEP (PMID:22926577) UniProt PMID:22926577 NCBI chr12:118,373,189...118,418,033
Ensembl chr12:118,376,555...118,418,033
JBrowse link
G SYNGR3 synaptogyrin 3 involved_in HEP (PMID:22926577) UniProt PMID:22926577 NCBI chr16:1,989,970...1,994,275
Ensembl chr16:1,989,660...1,994,275
JBrowse link
G SYPL2 synaptophysin like 2 involved_in HEP (PMID:22926577) UniProt PMID:22926577 NCBI chr 1:109,466,478...109,482,142
Ensembl chr 1:109,466,546...109,482,134
JBrowse link
G TTBK1 tau tubulin kinase 1 involved_in HEP (PMID:22926577) UniProt PMID:22926577 NCBI chr 6:43,243,481...43,288,259
Ensembl chr 6:43,243,481...43,288,258
JBrowse link
G YWHAE tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon involved_in HEP (PMID:22926577) UniProt PMID:22926577 NCBI chr17:1,344,275...1,400,229
Ensembl chr17:1,344,275...1,400,222
JBrowse link
G YWHAH tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein eta involved_in HEP (PMID:22926577) UniProt PMID:22926577 NCBI chr22:31,944,535...31,957,603
Ensembl chr22:31,944,522...31,957,603
JBrowse link
G YWHAQ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta involved_in HEP (PMID:22926577) UniProt PMID:22926577 NCBI chr 2:9,583,967...9,630,997
Ensembl chr 2:9,583,967...9,630,997
JBrowse link
G ZNF148 zinc finger protein 148 involved_in HEP (PMID:22926577) UniProt PMID:22926577 NCBI chr 3:125,225,669...125,375,354
Ensembl chr 3:125,225,669...125,375,325
Ensembl chr 3:125,225,669...125,375,325
JBrowse link
G ZNF430 zinc finger protein 430 involved_in HEP (PMID:22926577) UniProt PMID:22926577 NCBI chr19:21,020,657...21,060,050
Ensembl chr19:21,020,634...21,060,050
JBrowse link
subthalamic nucleus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PITX2 paired like homeodomain 2 acts_upstream_of_or_within ISO (MGI:3790896|PMID:18206388) MGI PMID:18206388 MGI:3790896 NCBI chr 4:110,617,423...110,642,123
Ensembl chr 4:110,617,423...110,642,123
JBrowse link
superior olivary nucleus maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDK5R1 cyclin dependent kinase 5 regulatory subunit 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2149271|PMID:11517264) Ensembl
MGI
PMID:11517264 GO_REF:0000107 MGI:2149271 NCBI chr17:32,485,028...32,491,256
Ensembl chr17:32,486,993...32,491,253
JBrowse link
G CDK5R2 cyclin dependent kinase 5 regulatory subunit 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2149271|PMID:11517264) Ensembl
MGI
PMID:11517264 GO_REF:0000107 MGI:2149271 NCBI chr 2:218,959,666...218,962,155
Ensembl chr 2:218,959,666...218,962,155
JBrowse link
vestibular nucleus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASCL1 achaete-scute family bHLH transcription factor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3621705|PMID:12885554) Ensembl
MGI
PMID:12885554 GO_REF:0000107 MGI:3621705 NCBI chr12:102,957,674...102,960,513
Ensembl chr12:102,957,674...102,960,513
JBrowse link
G CACNA1A calcium voltage-gated channel subunit alpha1 A acts_upstream_of_or_within ISO (MGI:77774|PMID:8719615) MGI PMID:8719615 MGI:77774 NCBI chr19:13,206,442...13,506,479
Ensembl chr19:13,206,442...13,633,025
JBrowse link
G KCNE1 potassium voltage-gated channel subfamily E regulatory subunit 1 involved_in ISO (MGI:3625254|PMID:11223304) MGI PMID:11223304 MGI:3625254 NCBI chr21:34,446,688...34,512,210
Ensembl chr21:34,446,688...34,512,210
Ensembl chr21:34,446,688...34,512,210
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18673
    developmental process 7499
      anatomical structure development 6922
        neural nucleus development 74
          abducens nucleus development 0
          caudate nucleus development 1
          cochlear nucleus development + 4
          dentate nucleus development 0
          dorsal motor nucleus of vagus nerve development + 0
          emboliform nucleus development 0
          facial nucleus development 2
          fastigial nucleus development 0
          globose nucleus development 0
          globus pallidus development 4
          hypoglossal nucleus development 0
          inferior olivary nucleus development + 0
          inferior raphe nucleus development 0
          inferior reticular formation development 0
          lateral geniculate nucleus development 1
          lateral reticular nucleus development 0
          locus ceruleus development + 1
          nucleus accumbens development 1
          nucleus ambiguus development 0
          putamen development 1
          retrotrapezoid nucleus development + 1
          salivary nucleus development + 0
          solitary nucleus development 0
          substantia nigra development 49
          subthalamic nucleus development 1
          superior olivary nucleus development + 2
          superior raphe nucleus development 0
          trigeminal motor nucleus development 0
          trigeminal sensory nucleus development + 3
          vestibular nucleus development 3
paths to the root