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ONTOLOGY REPORT - ANNOTATIONS


Term:neural nucleus development
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Accession:GO:0048857 term browser browse the term
Definition:The biological process whose specific outcome is the progression of a neural nucleus from its initial condition to its mature state. A neural nucleus is an anatomical structure consisting of a discrete aggregate of neuronal soma.


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neural nucleus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HOXB2 homeobox B2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:85074|PMID:9012503) Ensembl
MGI
PMID:9012503 GO_REF:0000107 MGI:85074 NCBI chr 9:24,803,996...24,810,109
Ensembl chr 9:24,804,426...24,806,614
JBrowse link
caudate nucleus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FOXP2 forkhead box P2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:53,311,214...53,864,056
Ensembl chr14:53,312,045...53,862,655
JBrowse link
cochlear nucleus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCL2 BCL2 apoptosis regulator involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1891561|PMID:11027399) Ensembl
MGI
PMID:11027399 GO_REF:0000107 MGI:1891561 NCBI chr 1:13,733,849...13,900,653
Ensembl chr 1:13,731,406...13,900,658
JBrowse link
G SCRIB scribble planar cell polarity protein involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4439427|PMID:20215345) Ensembl
MGI
PMID:20215345 GO_REF:0000107 MGI:4439427 NCBI chr13:37,356,405...37,374,765
Ensembl chr13:37,356,405...37,374,681
JBrowse link
G SEC24B SEC24 homolog B, COPII coat complex component involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4439427|PMID:20215345) Ensembl
MGI
PMID:20215345 GO_REF:0000107 MGI:4439427 NCBI chr32:29,671,702...29,766,628
Ensembl chr32:29,671,738...29,772,192
JBrowse link
G SLC4A7 solute carrier family 4 member 7 acts_upstream_of_or_within ISO (MGI:2680888|PMID:12808454) MGI PMID:12808454 MGI:2680888 NCBI chr23:16,710,649...16,788,277
Ensembl chr23:16,710,701...16,785,541
JBrowse link
facial nucleus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HOXA1 homeobox A1 acts_upstream_of_or_within ISO (MGI:62658|PMID:8102800) MGI PMID:8102800 MGI:62658 NCBI chr14:40,267,033...40,272,212
Ensembl chr14:40,267,528...40,269,681
JBrowse link
G HOXB1 homeobox B1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:83677|PMID:8898234) Ensembl
MGI
PMID:8898234 GO_REF:0000107 MGI:83677 NCBI chr 9:24,791,848...24,795,443
Ensembl chr 9:24,792,889...24,794,302
JBrowse link
globus pallidus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARX aristaless related homeobox acts_upstream_of_or_within ISO (MGI:3709215|PMID:17460091) MGI PMID:17460091 MGI:3709215 NCBI chr  X:20,545,346...20,556,206
Ensembl chr  X:20,545,346...20,556,206
JBrowse link
G KCNC1 potassium voltage-gated channel subfamily C member 1 ISO RGD PMID:10482766 RGD:9685780 NCBI chr21:40,273,366...40,315,189
Ensembl chr21:40,273,827...40,315,189
JBrowse link
G KCNC2 potassium voltage-gated channel subfamily C member 2 ISO RGD PMID:10482766 RGD:9685780 NCBI chr10:15,599,428...15,822,579
Ensembl chr10:15,643,962...15,818,097
JBrowse link
G NKX2-1 NK2 homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4437145|PMID:20181579) Ensembl
MGI
PMID:20181579 GO_REF:0000107 MGI:4437145
lateral geniculate nucleus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHRNB2 cholinergic receptor nicotinic beta 2 subunit acts_upstream_of_or_within ISO (MGI:3721829|PMID:12097474) MGI PMID:12097474 MGI:3721829 NCBI chr 7:42,786,505...42,797,976
Ensembl chr 7:42,789,600...42,795,722
JBrowse link
locus ceruleus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PHOX2A paired like homeobox 2A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4849589|PMID:21068058)
(MGI:86465|PMID:9115735)
Ensembl
MGI
PMID:9115735 PMID:21068058 GO_REF:0000107 MGI:4849589 MGI:86465 NCBI chr21:25,895,628...25,900,338
Ensembl chr21:25,892,321...25,900,351
JBrowse link
nucleus accumbens development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A3 aldehyde dehydrogenase 1 family member A3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3701419|PMID:17207476) Ensembl
MGI
PMID:17207476 GO_REF:0000107 MGI:3701419 NCBI chr 3:40,130,904...40,168,686
Ensembl chr 3:40,132,726...40,168,664
JBrowse link
principal sensory nucleus of trigeminal nerve development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G KIRREL3 kirre like nephrin family adhesion molecule 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4949565|PMID:21241806) Ensembl
MGI
PMID:21241806 GO_REF:0000107 MGI:4949565 NCBI chr 5:7,583,530...8,124,045
Ensembl chr 5:7,583,805...8,123,080
JBrowse link
G MECP2 methyl-CpG binding protein 2 ISO RGD PMID:12605461 RGD:12790706 NCBI chr  X:121,866,721...121,876,088
Ensembl chr  X:121,873,218...121,932,994
JBrowse link
G NFIB nuclear factor I B involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:34,573,136...35,010,319
Ensembl chr11:34,579,431...34,901,322
JBrowse link
putamen development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FOXP2 forkhead box P2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:53,311,214...53,864,056
Ensembl chr14:53,312,045...53,862,655
JBrowse link
retrotrapezoid nucleus neuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PHOX2B paired like homeobox 2B involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:38,865,963...38,869,912
Ensembl chr13:38,865,995...38,869,854
JBrowse link
substantia nigra development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACTB actin beta involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 6:12,421,006...12,424,449
Ensembl chr 6:12,418,932...12,462,845
JBrowse link
G ATP5PF ATP synthase peripheral stalk subunit F6 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr31:21,207,080...21,212,220
Ensembl chr31:21,200,337...21,215,975
JBrowse link
G BASP1 brain abundant membrane attached signal protein 1 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 4:86,360,641...86,417,408
Ensembl chr 4:86,361,608...86,382,715
JBrowse link
G CALM1 calmodulin 1 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 8:61,398,231...61,408,874
Ensembl chr 8:61,398,244...61,406,195
JBrowse link
G CALM2 calmodulin 2 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr10:49,299,698...49,314,533
Ensembl chr10:49,299,897...49,314,457
JBrowse link
G CALM3 calmodulin 3 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 1:109,284,729...109,294,491
Ensembl chr 1:109,286,155...109,294,391
JBrowse link
G CCDC14 coiled-coil domain containing 14 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr33:26,958,752...27,009,159
Ensembl chr33:26,959,430...27,009,436
JBrowse link
G CNP 2',3'-cyclic nucleotide 3' phosphodiesterase involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 9:20,888,350...20,896,139
Ensembl chr 9:20,886,574...20,896,079
JBrowse link
G DYNLL1 dynein light chain LC8-type 1 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr26:16,369,878...16,402,302
Ensembl chr26:16,398,886...16,402,021
Ensembl chr26:16,398,886...16,402,021
JBrowse link
G ENO3 enolase 3 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 5:31,662,284...31,667,498
Ensembl chr 5:31,662,285...31,834,968
JBrowse link
G FGF2 fibroblast growth factor 2 acts_upstream_of_or_within ISO (MGI:3696489|PMID:17234579) MGI PMID:17234579 MGI:3696489 NCBI chr19:17,403,288...17,463,143
Ensembl chr19:16,994,661...17,463,151
JBrowse link
G FGF9 fibroblast growth factor 9 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr25:16,630,321...16,665,935
Ensembl chr25:16,632,812...16,663,550
JBrowse link
G FGFR3 fibroblast growth factor receptor 3 acts_upstream_of_or_within ISO (MGI:3696489|PMID:17234579) MGI PMID:17234579 MGI:3696489 NCBI chr 3:62,309,128...62,318,932
Ensembl chr 3:62,303,756...62,323,896
JBrowse link
G G6PD glucose-6-phosphate dehydrogenase involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr  X:122,217,317...122,231,862
Ensembl chr  X:122,205,683...122,231,678
JBrowse link
G GLUD1 glutamate dehydrogenase 1 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 4:34,629,046...34,662,711 JBrowse link
G GNB4 G protein subunit beta 4 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr34:12,818,063...12,849,822
Ensembl chr34:12,822,104...12,876,865
JBrowse link
G H2BC12 H2B clustered histone 12 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr35:24,556,368...24,558,216
Ensembl chr35:24,557,784...24,558,164
JBrowse link
G HSPA5 heat shock protein family A (Hsp70) member 5 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 9:57,850,870...57,855,607
Ensembl chr 9:57,850,922...57,855,257
JBrowse link
G INA internexin neuronal intermediate filament protein alpha involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr28:15,670,919...15,685,080
Ensembl chr28:15,670,999...15,683,380
JBrowse link
G LDHA lactate dehydrogenase A involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr21:40,829,844...40,840,947 JBrowse link
G LOC100688796 ATP synthase F(0) complex subunit B1, mitochondrial involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr17:63,940,486...63,954,982
Ensembl chr 6:40,613,415...40,625,979
JBrowse link
G LOC100855552 creatine kinase B-type involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 8:71,284,104...71,287,379 JBrowse link
G LOC403934 cell division cycle 42 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 2:77,153,276...77,169,947
Ensembl chr 2:77,153,095...77,199,211
JBrowse link
G LOC612644 cytochrome c oxidase subunit 6B1 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 1:116,960,851...116,969,415 JBrowse link
G MAG myelin associated glycoprotein involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 1:117,288,306...117,301,975
Ensembl chr 1:117,288,343...117,302,386
JBrowse link
G MAOB monoamine oxidase B involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr  X:37,765,810...37,883,955
Ensembl chr  X:37,765,813...37,883,955
JBrowse link
G MAPKAP1 MAPK associated protein 1 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 9:57,447,115...57,699,979
Ensembl chr 9:57,446,832...57,699,950
JBrowse link
G MBP myelin basic protein involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 1:2,841,801...2,952,553
Ensembl chr 1:2,846,589...2,951,860
JBrowse link
G NDRG2 NDRG family member 2 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr15:18,106,651...18,115,026
Ensembl chr15:18,106,654...18,113,970
JBrowse link
G NDUFS3 NADH:ubiquinone oxidoreductase core subunit S3 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr18:42,069,402...42,075,843
Ensembl chr18:42,069,398...42,076,921
JBrowse link
G PADI2 peptidyl arginine deiminase 2 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 2:81,116,031...81,147,889
Ensembl chr 2:81,116,140...81,145,043
JBrowse link
G PLP1 proteolipid protein 1 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr  X:77,191,112...77,207,772
Ensembl chr  X:77,191,150...77,205,964
JBrowse link
G RAD1 RAD1 checkpoint DNA exonuclease involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 4:73,372,391...73,393,148
Ensembl chr 4:73,385,566...73,452,033
JBrowse link
G RHOA ras homolog family member A involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr20:39,824,552...39,888,089
Ensembl chr20:39,824,575...39,887,215
JBrowse link
G S100A1 S100 calcium binding protein A1 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 7:43,428,819...43,432,637
Ensembl chr 7:43,428,820...43,433,459
JBrowse link
G SEC16A SEC16 homolog A, endoplasmic reticulum export factor involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 9:49,027,190...49,060,858
Ensembl chr 9:49,031,669...49,060,848
JBrowse link
G SIRT2 sirtuin 2 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 1:114,224,922...114,235,041
Ensembl chr 1:114,224,900...114,234,583
JBrowse link
G SUDS3 SDS3 homolog, SIN3A corepressor complex component involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr26:14,716,759...14,749,475
Ensembl chr26:14,716,562...15,019,622
JBrowse link
G SYNGR3 synaptogyrin 3 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 6:38,941,933...38,944,110 JBrowse link
G SYPL2 synaptophysin like 2 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 6:42,377,528...42,391,765
Ensembl chr 6:42,380,144...42,385,102
JBrowse link
G TTBK1 tau tubulin kinase 1 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr12:11,738,466...11,774,663
Ensembl chr12:11,738,232...11,757,814
JBrowse link
G YWHAE tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 9:45,506,830...45,562,081
Ensembl chr 9:45,507,282...45,562,086
JBrowse link
G YWHAH tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein eta involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr26:24,785,374...24,796,603
Ensembl chr26:24,785,368...24,795,778
JBrowse link
G YWHAQ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr17:6,660,504...6,697,954 JBrowse link
G ZNF148 zinc finger protein 148 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr33:28,229,270...28,347,939
Ensembl chr33:28,233,728...28,348,154
JBrowse link
subthalamic nucleus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PITX2 paired like homeodomain 2 acts_upstream_of_or_within ISO (MGI:3790896|PMID:18206388) MGI PMID:18206388 MGI:3790896 NCBI chr32:30,710,161...30,730,162
Ensembl chr32:30,710,685...30,730,273
JBrowse link
superior olivary nucleus maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDK5R1 cyclin dependent kinase 5 regulatory subunit 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2149271|PMID:11517264) Ensembl
MGI
PMID:11517264 GO_REF:0000107 MGI:2149271 NCBI chr 9:40,481,111...40,502,689
Ensembl chr 9:40,501,646...40,502,569
JBrowse link
G CDK5R2 cyclin dependent kinase 5 regulatory subunit 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2149271|PMID:11517264) Ensembl
MGI
PMID:11517264 GO_REF:0000107 MGI:2149271 NCBI chr37:25,528,934...25,535,795
Ensembl chr37:25,529,151...25,530,263
JBrowse link
vestibular nucleus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASCL1 achaete-scute family bHLH transcription factor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3621705|PMID:12885554) Ensembl
MGI
PMID:12885554 GO_REF:0000107 MGI:3621705 NCBI chr15:41,694,021...41,696,933
Ensembl chr15:41,694,269...41,695,391
JBrowse link
G CACNA1A calcium voltage-gated channel subunit alpha1 A acts_upstream_of_or_within ISO (MGI:77774|PMID:8719615) MGI PMID:8719615 MGI:77774 NCBI chr20:48,747,087...49,036,627
Ensembl chr20:48,821,025...49,036,032
JBrowse link
G KCNE1 potassium voltage-gated channel subfamily E regulatory subunit 1 involved_in ISO (MGI:3625254|PMID:11223304) MGI PMID:11223304 MGI:3625254 NCBI chr31:29,858,428...29,868,315 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16211
    developmental process 6404
      anatomical structure development 5949
        neural nucleus development 70
          abducens nucleus development 0
          caudate nucleus development 1
          cochlear nucleus development + 4
          dentate nucleus development 0
          dorsal motor nucleus of vagus nerve development + 0
          emboliform nucleus development 0
          facial nucleus development 2
          fastigial nucleus development 0
          globose nucleus development 0
          globus pallidus development 4
          hypoglossal nucleus development 0
          inferior olivary nucleus development + 0
          inferior raphe nucleus development 0
          inferior reticular formation development 0
          lateral geniculate nucleus development 1
          lateral reticular nucleus development 0
          locus ceruleus development + 1
          nucleus accumbens development 1
          nucleus ambiguus development 0
          putamen development 1
          retrotrapezoid nucleus development + 1
          salivary nucleus development + 0
          solitary nucleus development 0
          substantia nigra development 45
          subthalamic nucleus development 1
          superior olivary nucleus development + 2
          superior raphe nucleus development 0
          trigeminal motor nucleus development 0
          trigeminal sensory nucleus development + 3
          vestibular nucleus development 3
paths to the root