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ONTOLOGY REPORT - ANNOTATIONS


Term:neural nucleus development
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Accession:GO:0048857 term browser browse the term
Definition:The biological process whose specific outcome is the progression of a neural nucleus from its initial condition to its mature state. A neural nucleus is an anatomical structure consisting of a discrete aggregate of neuronal soma.


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neural nucleus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HOXB2 homeobox B2 acts_upstream_of_or_within ISO (MGI:85074|PMID:9012503) MGI PMID:9012503 MGI:85074 NCBI chr17:8,991,652...8,994,092
Ensembl chr17:9,176,313...9,178,713
JBrowse link
caudate nucleus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FOXP2 forkhead box P2 involved_in ISO (PMID:11872605) UniProt PMID:11872605 NCBI chr 7:106,040,118...106,648,741
Ensembl chr 7:119,077,332...119,343,893
JBrowse link
cochlear nucleus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCL2 BCL2 apoptosis regulator acts_upstream_of_or_within ISO (MGI:1891561|PMID:11027399) MGI PMID:11027399 MGI:1891561 NCBI chr18:56,481,212...56,679,012
Ensembl chr18:59,802,443...59,992,100
JBrowse link
G SCRIB scribble planar cell polarity protein acts_upstream_of_or_within ISO (MGI:4439427|PMID:20215345) MGI PMID:20215345 MGI:4439427 NCBI chr 8:140,544,797...140,571,078
Ensembl chr 8:143,557,722...143,582,353
JBrowse link
G SEC24B SEC24 homolog B, COPII coat complex component acts_upstream_of_or_within ISO (MGI:4439427|PMID:20215345) MGI PMID:20215345 MGI:4439427 NCBI chr 4:101,937,119...102,043,038
Ensembl chr 4:112,534,779...112,628,065
JBrowse link
G SLC4A7 solute carrier family 4 member 7 acts_upstream_of_or_within ISO (MGI:2680888|PMID:12808454) MGI PMID:12808454 MGI:2680888 NCBI chr 3:27,261,155...27,373,223
Ensembl chr 3:27,591,639...27,670,815
JBrowse link
facial nucleus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HOXA1 homeobox A1 acts_upstream_of_or_within ISO (MGI:62658|PMID:8102800) MGI PMID:8102800 MGI:62658 NCBI chr 7:27,737,432...27,740,442
Ensembl chr 7:27,335,710...27,339,747
JBrowse link
G HOXB1 homeobox B1 acts_upstream_of_or_within ISO (MGI:83677|PMID:8898234) MGI PMID:8898234 MGI:83677 NCBI chr17:9,005,745...9,008,230
Ensembl chr17:9,190,137...9,191,696
JBrowse link
globus pallidus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARX aristaless related homeobox acts_upstream_of_or_within ISO (MGI:3709215|PMID:17460091) MGI PMID:17460091 MGI:3709215 NCBI chr  X:17,598,858...17,612,544 JBrowse link
G KCNC1 potassium voltage-gated channel subfamily C member 1 ISO RGD PMID:10482766 RGD:9685780 NCBI chr11:17,788,010...17,936,591
Ensembl chr11:17,472,158...17,517,892
JBrowse link
G KCNC2 potassium voltage-gated channel subfamily C member 2 ISO RGD PMID:10482766 RGD:9685780 NCBI chr12:72,566,924...72,736,270 JBrowse link
G NKX2-1 NK2 homeobox 1 involved_in ISO (PMID:11854319) UniProt PMID:11854319 NCBI chr14:17,224,870...17,273,252
Ensembl chr14:35,404,127...35,626,722
JBrowse link
lateral geniculate nucleus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHRNB2 cholinergic receptor nicotinic beta 2 subunit acts_upstream_of_or_within ISO (MGI:3721829|PMID:12097474) MGI PMID:12097474 MGI:3721829 NCBI chr 1:129,922,740...129,931,582
Ensembl chr 1:133,535,023...133,547,361
JBrowse link
locus ceruleus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PHOX2A paired like homeobox 2A acts_upstream_of_or_within ISO (MGI:86465|PMID:9115735)
(MGI:4849589|PMID:21068058)
MGI PMID:9115735 PMID:21068058 MGI:4849589 MGI:86465 NCBI chr11:67,317,747...67,322,850 JBrowse link
nucleus accumbens development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A3 aldehyde dehydrogenase 1 family member A3 acts_upstream_of_or_within ISO (MGI:3701419|PMID:17207476) MGI PMID:17207476 MGI:3701419 NCBI chr15:79,603,893...79,640,866
Ensembl chr15:98,891,770...98,928,396
JBrowse link
principal sensory nucleus of trigeminal nerve development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G KIRREL3 kirre like nephrin family adhesion molecule 3 acts_upstream_of_or_within ISO (MGI:4949565|PMID:21241806) MGI PMID:21241806 MGI:4949565 NCBI chr11:121,236,962...121,821,806
Ensembl chr11:125,146,563...125,723,504
JBrowse link
G MECP2 methyl-CpG binding protein 2 ISO RGD PMID:12605461 RGD:12790706 NCBI chr  X:143,571,864...143,647,192
Ensembl chr  X:153,465,204...153,527,854
JBrowse link
G NFIB nuclear factor I B involved_in ISO (MGI:5284754|PMID:19107796) UniProt PMID:19107796 MGI:5284754 NCBI chr 9:13,923,516...14,376,264 JBrowse link
putamen development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FOXP2 forkhead box P2 involved_in ISO (PMID:11872605) UniProt PMID:11872605 NCBI chr 7:106,040,118...106,648,741
Ensembl chr 7:119,077,332...119,343,893
JBrowse link
retrotrapezoid nucleus neuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PHOX2B paired like homeobox 2B involved_in ISO (MGI:4418003|PMID:19940179) BHF-UCL PMID:19940179 MGI:4418003 NCBI chr 4:36,070,924...36,074,532
Ensembl chr 4:41,919,742...41,922,449
JBrowse link
substantia nigra development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP5PB ATP synthase peripheral stalk-membrane subunit b involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 1:114,110,749...114,122,715
Ensembl chr 1:126,224,725...126,235,897
JBrowse link
G ATP5PF ATP synthase peripheral stalk subunit F6 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr21:12,169,567...12,180,717
Ensembl chr21:25,519,441...25,537,363
JBrowse link
G BASP1 brain abundant membrane attached signal protein 1 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 5:17,521,054...17,580,999 JBrowse link
G CALM1 calmodulin 1 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr14:71,015,099...71,026,322
Ensembl chr19:52,121,687...52,131,135
Ensembl chr2A:52,121,687...52,131,135
JBrowse link
G CALM2 calmodulin 2 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr2A:47,274,722...47,290,861
Ensembl chr2A:48,204,518...48,220,697
JBrowse link
G CALM3 calmodulin 3 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr19:43,593,069...43,602,550
Ensembl chr19:52,121,687...52,131,135
JBrowse link
G CASP5 caspase 5 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr11:99,931,066...99,963,652 JBrowse link
G CCDC14 coiled-coil domain containing 14 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 3:121,018,879...121,066,563
Ensembl chr 3:127,918,294...127,965,906
JBrowse link
G CDC42 cell division cycle 42 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 1:21,245,970...21,286,210 JBrowse link
G CKB creatine kinase B involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr14:84,145,931...84,149,093 JBrowse link
G CNP 2',3'-cyclic nucleotide 3' phosphodiesterase involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr17:15,338,085...15,349,089
Ensembl chr17:15,560,056...15,568,916
JBrowse link
G DYNLL1 dynein light chain LC8-type 1 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr12:118,078,401...118,080,822 JBrowse link
G ENO3 enolase 3 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr17:4,997,052...5,005,221
Ensembl chr17:4,986,116...4,992,876
JBrowse link
G FGF2 fibroblast growth factor 2 acts_upstream_of_or_within ISO (MGI:3696489|PMID:17234579) MGI PMID:17234579 MGI:3696489 NCBI chr 4:115,005,136...115,076,369
Ensembl chr 4:126,149,813...126,214,942
JBrowse link
G FGF9 fibroblast growth factor 9 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr13:2,967,713...3,000,554
Ensembl chr13:21,273,333...21,307,198
JBrowse link
G FGFR3 fibroblast growth factor receptor 3 acts_upstream_of_or_within ISO (MGI:3696489|PMID:17234579) MGI PMID:17234579 MGI:3696489 NCBI chr 4:1,933,172...1,948,742 JBrowse link
G G6PD glucose-6-phosphate dehydrogenase involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr  X:143,972,798...143,988,960
Ensembl chr  X:153,843,092...153,860,674
JBrowse link
G GLUD1 glutamate dehydrogenase 1 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr10:83,498,338...83,540,730 JBrowse link
G GNB4 G protein subunit beta 4 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 3:176,428,475...176,483,905
Ensembl chr 3:184,601,229...184,630,913
JBrowse link
G HSPA5 heat shock protein family A (Hsp70) member 5 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 9:96,351,645...96,356,761
Ensembl chr 9:124,865,211...124,870,458
JBrowse link
G INA internexin neuronal intermediate filament protein alpha involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr10:99,877,665...99,890,947
Ensembl chr10:103,340,438...103,353,888
JBrowse link
G LDHA lactate dehydrogenase A involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr11:18,432,347...18,445,694
Ensembl chr11:18,115,250...18,128,400
JBrowse link
G LOC100972703 cytochrome c oxidase subunit 6B1 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr19:32,578,126...32,588,684
Ensembl chr19:41,314,020...41,324,489
JBrowse link
G LOC100978345 putative beta-actin-like protein 3 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr2B:28,292,280...28,334,471 JBrowse link
G MAG myelin associated glycoprotein involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr19:32,238,457...32,260,497
Ensembl chr19:40,975,763...40,997,401
JBrowse link
G MAOB monoamine oxidase B involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr  X:36,217,710...36,333,516
Ensembl chr  X:44,042,000...44,157,941
JBrowse link
G MAPKAP1 MAPK associated protein 1 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 9:96,561,157...96,825,478
Ensembl chr 9:125,072,137...125,336,658
JBrowse link
G MBP myelin basic protein involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr18:70,369,882...70,526,693
Ensembl chr18:73,629,522...73,755,351
JBrowse link
G NDRG2 NDRG family member 2 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr14:1,831,764...1,840,819
Ensembl chr14:19,913,674...19,967,470
JBrowse link
G NDUFS3 NADH:ubiquinone oxidoreductase core subunit S3 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr11:47,528,680...47,534,206
Ensembl chr11:48,078,332...48,083,863
JBrowse link
G PADI2 peptidyl arginine deiminase 2 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 1:16,011,708...16,064,344
Ensembl chr 1:17,067,729...17,120,513
JBrowse link
G PLP1 proteolipid protein 1 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr  X:93,015,098...93,031,193
Ensembl chr  X:103,353,184...103,412,513
JBrowse link
G RAD1 RAD1 checkpoint DNA exonuclease involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 5:75,452,153...75,465,022
Ensembl chr 5:80,732,954...80,744,448
JBrowse link
G RHOA ras homolog family member A involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 3:49,282,009...49,339,887 JBrowse link
G S100A1 S100 calcium binding protein A1 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 1:128,984,296...128,987,979 JBrowse link
G SEC16A SEC16 homolog A, endoplasmic reticulum export factor involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 9:107,516,556...107,560,930
Ensembl chr 9:136,493,957...136,533,655
JBrowse link
G SIRT2 sirtuin 2 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr19:35,984,453...36,005,582
Ensembl chr19:44,533,965...44,554,799
JBrowse link
G SUDS3 SDS3 homolog, SIN3A corepressor complex component involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr12:115,957,736...115,999,217
Ensembl chr12:119,336,258...119,377,030
JBrowse link
G SYNGR3 synaptogyrin 3 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr16:710,090...714,421
Ensembl chr16:2,078,645...2,083,100
JBrowse link
G SYPL2 synaptophysin like 2 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 1:111,843,315...111,859,475
Ensembl chr 1:111,072,937...111,085,621
JBrowse link
G TTBK1 tau tubulin kinase 1 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 6:42,835,285...42,880,100
Ensembl chr 6:44,131,360...44,169,912
JBrowse link
G YWHAE tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein epsilon involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr17:1,332,004...1,387,120
Ensembl chr17:1,229,080...1,285,470
JBrowse link
G YWHAH tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein eta involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr22:12,966,653...12,979,695
Ensembl chr22:30,819,821...30,831,804
JBrowse link
G YWHAQ tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr2A:9,573,413...9,620,495 JBrowse link
G ZNF148 zinc finger protein 148 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 3:122,357,670...122,507,142
Ensembl chr 3:129,229,690...129,320,554
JBrowse link
subthalamic nucleus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PITX2 paired like homeodomain 2 acts_upstream_of_or_within ISO (MGI:3790896|PMID:18206388) MGI PMID:18206388 MGI:3790896 NCBI chr 4:103,112,624...103,137,356 JBrowse link
superior olivary nucleus maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDK5R1 cyclin dependent kinase 5 regulatory subunit 1 acts_upstream_of_or_within ISO (MGI:2149271|PMID:11517264) MGI PMID:11517264 MGI:2149271 NCBI chr17:24,285,069...24,289,311
Ensembl chr17:24,577,537...24,579,232
JBrowse link
G CDK5R2 cyclin dependent kinase 5 regulatory subunit 2 acts_upstream_of_or_within ISO (MGI:2149271|PMID:11517264) MGI PMID:11517264 MGI:2149271 NCBI chr2B:106,217,926...106,220,444 JBrowse link
vestibular nucleus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASCL1 achaete-scute family bHLH transcription factor 1 acts_upstream_of_or_within ISO (MGI:3621705|PMID:12885554) MGI PMID:12885554 MGI:3621705 NCBI chr12:100,536,895...100,539,737
Ensembl chr12:103,932,302...103,932,999
JBrowse link
G CACNA1A calcium voltage-gated channel subunit alpha1 A acts_upstream_of_or_within ISO (MGI:77774|PMID:8719615) MGI PMID:8719615 MGI:77774 NCBI chr19:12,769,586...13,189,022
Ensembl chr19:13,507,102...13,804,729
JBrowse link
G KCNE1 potassium voltage-gated channel subfamily E regulatory subunit 1 involved_in ISO (MGI:3625254|PMID:11223304) MGI PMID:11223304 MGI:3625254 NCBI chr21:20,818,395...20,884,053 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12613
    developmental process 5887
      anatomical structure development 5490
        neural nucleus development 70
          abducens nucleus development 0
          caudate nucleus development 1
          cochlear nucleus development + 4
          dentate nucleus development 0
          dorsal motor nucleus of vagus nerve development + 0
          emboliform nucleus development 0
          facial nucleus development 2
          fastigial nucleus development 0
          globose nucleus development 0
          globus pallidus development 4
          hypoglossal nucleus development 0
          inferior olivary nucleus development + 0
          inferior raphe nucleus development 0
          inferior reticular formation development 0
          lateral geniculate nucleus development 1
          lateral reticular nucleus development 0
          locus ceruleus development + 1
          nucleus accumbens development 1
          nucleus ambiguus development 0
          putamen development 1
          retrotrapezoid nucleus development + 1
          salivary nucleus development + 0
          solitary nucleus development 0
          substantia nigra development 45
          subthalamic nucleus development 1
          superior olivary nucleus development + 2
          superior raphe nucleus development 0
          trigeminal motor nucleus development 0
          trigeminal sensory nucleus development + 3
          vestibular nucleus development 3
paths to the root