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ONTOLOGY REPORT - ANNOTATIONS


Term:neural nucleus development
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Accession:GO:0048857 term browser browse the term
Definition:The biological process whose specific outcome is the progression of a neural nucleus from its initial condition to its mature state. A neural nucleus is an anatomical structure consisting of a discrete aggregate of neuronal soma.



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neural nucleus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hoxb2 homeobox B2 acts_upstream_of_or_within ISO MGI:2151772 (MGI:85074|PMID:9012503) RGD PMID:9012503 MGI:85074 NCBI chr10:81,317,927...81,320,223
Ensembl chr10:81,318,026...81,320,192
JBrowse link
abducens nucleus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf2 activating transcription factor 2 involved_in ISO
IEA
MGI:3720850 (MGI:5007596|PMID:21533046)
GO_REF:0000107
RGD
Ensembl
PMID:21533046 GO_REF:0000107 MGI:5007596 NCBI chr 3:58,718,323...58,795,280
Ensembl chr 3:58,718,332...58,795,236
JBrowse link
caudate nucleus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxp2 forkhead box P2 involved_in ISO (PMID:11872605) RGD PMID:11872605 NCBI chr 4:43,133,827...43,712,442
Ensembl chr 4:43,133,912...43,711,683
JBrowse link
cochlear nucleus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcl2 BCL2, apoptosis regulator involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857134 (MGI:1891561|PMID:11027399)
Ensembl
RGD
PMID:11027399 GO_REF:0000107 MGI:1891561 NCBI chr13:22,689,783...22,853,920 JBrowse link
G Scrib scribble planar cell polarity protein acts_upstream_of_or_within ISO MGI:2139764 (MGI:4439427|PMID:20215345) RGD PMID:20215345 MGI:4439427 NCBI chr 7:107,759,343...107,782,364
Ensembl chr 7:107,759,343...107,782,331
JBrowse link
G Sec24b SEC24 homolog B, COPII coat complex component acts_upstream_of_or_within ISO MGI:2145950|MGI:4440621 (MGI:4439427|PMID:20215345) RGD PMID:20215345 MGI:4439427 NCBI chr 2:218,562,670...218,632,753
Ensembl chr 2:218,562,676...218,632,699
JBrowse link
G Slc4a7 solute carrier family 4 member 7 acts_upstream_of_or_within ISO MGI:2682641 (MGI:2680888|PMID:12808454) RGD PMID:12808454 MGI:2680888 NCBI chr15:10,585,307...10,664,781
Ensembl chr15:10,588,979...10,664,781
JBrowse link
facial nucleus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf2 activating transcription factor 2 involved_in ISO
IEA
MGI:3720850 (MGI:5007596|PMID:21533046)
GO_REF:0000107
RGD
Ensembl
PMID:21533046 GO_REF:0000107 MGI:5007596 NCBI chr 3:58,718,323...58,795,280
Ensembl chr 3:58,718,332...58,795,236
JBrowse link
G Hoxa1 homeobox A1 acts_upstream_of_or_within ISO MGI:1857504 (MGI:62658|PMID:8102800) RGD PMID:8102800 MGI:62658 NCBI chr 4:81,255,814...81,258,504
Ensembl chr 4:81,255,883...81,258,504
JBrowse link
G Hoxb1 homeo box B1 acts_upstream_of_or_within ISO MGI:1857824 (MGI:83677|PMID:8898234) RGD PMID:8898234 MGI:83677 NCBI chr10:81,331,507...81,332,928
Ensembl chr10:81,331,507...81,332,836
JBrowse link
globus pallidus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arx aristaless related homeobox involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2679972 (MGI:3709215|PMID:17460091)
Ensembl
RGD
PMID:17460091 GO_REF:0000107 MGI:3709215 NCBI chr  X:58,016,233...58,028,149
Ensembl chr  X:58,016,233...58,028,142
JBrowse link
G Kcnc1 potassium voltage-gated channel subfamily C member 1 IEP RGD PMID:10482766 RGD:9685780 NCBI chr 1:96,902,953...96,944,744
Ensembl chr 1:96,902,953...96,944,744
JBrowse link
G Kcnc2 potassium voltage-gated channel subfamily C member 2 IEP RGD PMID:10482766 RGD:9685780 NCBI chr 7:47,700,035...47,883,979
Ensembl chr 7:47,700,288...47,883,968
JBrowse link
G Nkx2-1 NK2 homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3653645 (MGI:4437145|PMID:20181579)
(PMID:11854319)
Ensembl
RGD
PMID:11854319 PMID:20181579 GO_REF:0000107 MGI:4437145 NCBI chr 6:73,996,601...74,001,483
Ensembl chr 6:73,996,601...73,999,791
JBrowse link
hypoglossal nucleus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf2 activating transcription factor 2 involved_in ISO
IEA
MGI:3720850 (MGI:5007596|PMID:21533046)
GO_REF:0000107
RGD
Ensembl
PMID:21533046 GO_REF:0000107 MGI:5007596 NCBI chr 3:58,718,323...58,795,280
Ensembl chr 3:58,718,332...58,795,236
JBrowse link
lateral geniculate nucleus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chrnb2 cholinergic receptor nicotinic beta 2 subunit acts_upstream_of_or_within ISO MGI:2158714 (MGI:3721829|PMID:12097474) RGD PMID:12097474 MGI:3721829 NCBI chr 2:175,181,402...175,189,619
Ensembl chr 2:175,181,402...175,189,619
JBrowse link
locus ceruleus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Phox2a paired-like homeobox 2a involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2180328|MGI:4438118 (MGI:4849589|PMID:21068058), (MGI:86465|PMID:9115735)
Ensembl
RGD
PMID:9115735 PMID:21068058 GO_REF:0000107 MGI:4849589 MGI:86465 NCBI chr 1:156,178,754...156,183,118
Ensembl chr 1:156,178,754...156,183,118
JBrowse link
nucleus accumbens development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a3 aldehyde dehydrogenase 1 family, member A3 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3512079 (MGI:3701419|PMID:17207476)
Ensembl
RGD
PMID:17207476 GO_REF:0000107 MGI:3701419 NCBI chr 1:119,982,272...120,017,416
Ensembl chr 1:119,982,277...120,017,436
JBrowse link
principal sensory nucleus of trigeminal nerve development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kirrel3 kirre like nephrin family adhesion molecule 3 acts_upstream_of_or_within ISO (MGI:4949565|PMID:21241806) RGD PMID:21241806 MGI:4949565 NCBI chr 8:32,865,779...33,407,555
Ensembl chr 8:32,862,776...33,405,676
JBrowse link
G Mecp2 methyl CpG binding protein 2 IEP RGD PMID:12605461 RGD:12790706 NCBI chr  X:151,781,177...151,844,687
Ensembl chr  X:151,789,930...151,844,689
JBrowse link
G Nfib nuclear factor I/B involved_in ISS
ISO
GO_REF:0000024
(MGI:5284754|PMID:19107796)
UniProt
RGD
PMID:19107796 GO_REF:0000024 MGI:5284754 NCBI chr 5:96,759,208...96,973,092
Ensembl chr 5:96,764,653...96,975,479
JBrowse link
putamen development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxp2 forkhead box P2 involved_in ISO (PMID:11872605) RGD PMID:11872605 NCBI chr 4:43,133,827...43,712,442
Ensembl chr 4:43,133,912...43,711,683
JBrowse link
retrotrapezoid nucleus neuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Phox2b paired-like homeobox 2b involved_in ISO (MGI:4418003|PMID:19940179) RGD PMID:19940179 MGI:4418003 NCBI chr14:41,066,012...41,069,202
Ensembl chr14:41,066,264...41,068,978
JBrowse link
substantia nigra development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actb actin, beta involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr12:11,663,112...11,666,697
Ensembl chr12:11,663,109...11,672,877
JBrowse link
G Atp5pb ATP synthase peripheral stalk-membrane subunit b involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 2:193,424,138...193,435,418
Ensembl chr 2:193,424,047...193,435,418
JBrowse link
G Atp5pf ATP synthase peripheral stalk subunit F6 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr11:23,881,594...23,889,581
Ensembl chr11:23,881,592...23,889,119
JBrowse link
G Basp1 brain abundant, membrane attached signal protein 1 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 2:75,816,130...75,863,801
Ensembl chr 2:75,816,122...75,864,043
JBrowse link
G Calm1 calmodulin 1 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 6:119,487,691...119,495,759
Ensembl chr 6:119,487,621...119,498,227
JBrowse link
G Calm2 calmodulin 2 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 6:7,091,624...7,104,284
Ensembl chr 6:7,091,567...7,104,287
JBrowse link
G Calm3 calmodulin 3 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 1:77,590,668...77,597,776
Ensembl chr 1:77,589,230...77,592,207
JBrowse link
G Ccdc14 coiled-coil domain containing 14 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr11:66,052,063...66,087,915
Ensembl chr11:66,052,620...66,087,956
JBrowse link
G Cdc42 cell division cycle 42 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 5:149,555,069...149,593,239
Ensembl chr 5:149,553,724...149,593,111
JBrowse link
G Ckb creatine kinase B involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 6:130,729,420...130,732,301
Ensembl chr 6:130,729,423...130,732,315
JBrowse link
G Cnp 2',3'-cyclic nucleotide 3' phosphodiesterase involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr10:85,511,164...85,517,723
Ensembl chr10:85,511,160...85,517,720
JBrowse link
G Cox6b1 cytochrome c oxidase subunit 6B1 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 1:85,875,080...85,884,081
Ensembl chr 1:85,875,109...85,884,001
JBrowse link
G Dynll1 dynein light chain LC8-type 1 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr12:41,312,367...41,314,742
Ensembl chr12:41,312,367...41,314,741
JBrowse link
G Eno3 enolase 3 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr10:55,370,531...55,375,921
Ensembl chr10:55,366,975...55,375,921
JBrowse link
G Fgf2 fibroblast growth factor 2 acts_upstream_of_or_within ISO MGI:1857458 (MGI:3696489|PMID:17234579) RGD PMID:17234579 MGI:3696489 NCBI chr 2:120,236,328...120,290,673
Ensembl chr 2:120,236,328...120,291,221
JBrowse link
G Fgf9 fibroblast growth factor 9 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr15:32,208,993...32,254,952
Ensembl chr15:32,210,074...32,253,309
JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 acts_upstream_of_or_within ISO MGI:1931521 (MGI:3696489|PMID:17234579) RGD PMID:17234579 MGI:3696489 NCBI chr14:76,987,242...77,002,671
Ensembl chr14:76,987,993...77,003,341
JBrowse link
G G6pd glucose-6-phosphate dehydrogenase involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr  X:152,201,081...152,220,863
Ensembl chr  X:152,201,098...152,220,801
JBrowse link
G Glud1 glutamate dehydrogenase 1 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr16:9,640,312...9,673,961
Ensembl chr16:9,640,312...9,673,957
JBrowse link
G Gnb4 G protein subunit beta 4 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 2:115,360,746...115,400,680
Ensembl chr 2:115,364,918...115,400,579
JBrowse link
G Hspa5 heat shock protein family A (Hsp70) member 5 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 3:18,055,507...18,059,969
Ensembl chr 3:18,055,405...18,059,891
JBrowse link
G Ina internexin neuronal intermediate filament protein, alpha involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 1:245,896,775...245,908,330
Ensembl chr 1:245,896,775...245,908,330
JBrowse link
G Ldha lactate dehydrogenase A involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 1:97,371,823...97,381,247
Ensembl chr 1:97,366,021...97,433,472
JBrowse link
G LOC100361457 actin, gamma 1 propeptide-like involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 3:72,977,764...72,979,691
Ensembl chr10:105,619,737...105,624,232
JBrowse link
G Mag myelin-associated glycoprotein involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 1:86,148,227...86,163,726
Ensembl chr 1:86,148,228...86,163,656
JBrowse link
G Maob monoamine oxidase B involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr  X:5,907,327...6,010,996
Ensembl chr  X:5,907,266...6,011,003
JBrowse link
G Mapkap1 MAPK associated protein 1 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 3:17,715,813...17,918,387
Ensembl chr 3:17,715,834...17,918,384
JBrowse link
G Mbp myelin basic protein involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr18:75,855,878...75,966,404
Ensembl chr18:75,855,878...75,966,404
JBrowse link
G Ndrg2 NDRG family member 2 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr15:24,600,981...24,609,621
Ensembl chr15:24,600,982...24,609,626
JBrowse link
G Ndufs3 NADH:ubiquinone oxidoreductase core subunit S3 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 3:76,876,646...76,883,824
Ensembl chr 3:76,876,646...76,883,824
JBrowse link
G Padi2 peptidyl arginine deiminase 2 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 5:153,209,053...153,251,632
Ensembl chr 5:153,209,053...153,251,632
JBrowse link
G Plp1 proteolipid protein 1 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr  X:100,184,039...100,201,035
Ensembl chr  X:100,185,767...100,201,032
JBrowse link
G Rad1 RAD1 checkpoint DNA exonuclease involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 2:59,461,597...59,469,707
Ensembl chr 2:59,461,607...59,469,689
JBrowse link
G Rhoa ras homolog family member A involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 8:108,991,926...109,025,746
Ensembl chr 8:108,991,954...109,025,746
JBrowse link
G S100a1 S100 calcium binding protein A1 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 2:175,993,922...175,998,765
Ensembl chr 2:175,993,922...175,999,544
JBrowse link
G Sec16a SEC16 homolog A, endoplasmic reticulum export factor involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 3:9,229,687...9,264,837
Ensembl chr 3:9,229,687...9,264,273
JBrowse link
G Sirt2 sirtuin 2 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 1:84,053,883...84,076,975
Ensembl chr 1:84,052,903...84,076,975
JBrowse link
G Suds3 SDS3 homolog, SIN3A corepressor complex component involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr12:39,477,181...39,499,633
Ensembl chr12:39,477,568...39,499,628
JBrowse link
G Syngr3 synaptogyrin 3 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr10:13,710,553...13,715,312
Ensembl chr10:13,704,998...13,715,669
JBrowse link
G Sypl2 synaptophysin-like 2 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 2:195,849,062...195,863,794
Ensembl chr 2:195,849,062...195,863,794
JBrowse link
G Ttbk1 tau tubulin kinase 1 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 9:14,493,166...14,538,372
Ensembl chr 9:14,493,389...14,535,774
JBrowse link
G Uchl1 ubiquitin C-terminal hydrolase L1 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr14:41,485,033...41,495,590
Ensembl chr14:41,485,031...41,495,590
JBrowse link
G Ywhae tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr10:60,584,665...60,622,352
Ensembl chr10:60,584,652...60,671,589
JBrowse link
G Ywhah tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, eta involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr14:77,696,332...77,705,715
Ensembl chr14:77,696,333...77,705,741
JBrowse link
G Ywhaq tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr 6:40,935,714...40,966,240
Ensembl chr 6:40,935,949...40,966,273
JBrowse link
G Zfp148 zinc finger protein 148 involved_in ISO (PMID:22926577) UniProt PMID:22926577 NCBI chr11:67,276,455...67,385,803
Ensembl chr11:67,281,707...67,385,772
JBrowse link
subthalamic nucleus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pitx2 paired-like homeodomain 2 acts_upstream_of_or_within ISO MGI:1857846 (MGI:3790896|PMID:18206388) RGD PMID:18206388 MGI:3790896 NCBI chr 2:217,717,738...217,737,293
Ensembl chr 2:217,717,693...217,737,293
JBrowse link
superior olivary nucleus maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdk5r1 cyclin-dependent kinase 5 regulatory subunit 1 acts_upstream_of_or_within ISO MGI:1330828 (MGI:2149271|PMID:11517264) RGD PMID:11517264 MGI:2149271 NCBI chr10:65,484,266...65,485,467
Ensembl chr10:65,483,941...65,488,456
JBrowse link
G Cdk5r2 cyclin-dependent kinase 5 regulatory subunit 2 acts_upstream_of_or_within ISO MGI:101764 (MGI:2149271|PMID:11517264) RGD PMID:11517264 MGI:2149271 NCBI chr 9:76,416,251...76,417,719
Ensembl chr 9:76,416,062...76,418,344
JBrowse link
vestibular nucleus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl1 achaete-scute family bHLH transcription factor 1 acts_upstream_of_or_within ISO MGI:1857470 (MGI:3621705|PMID:12885554) RGD PMID:12885554 MGI:3621705 NCBI chr 7:21,904,153...21,906,003
Ensembl chr 7:21,903,126...21,905,993
JBrowse link
G Cacna1a calcium voltage-gated channel subunit alpha1 A acts_upstream_of_or_within ISO MGI:1856210 (MGI:77774|PMID:8719615) RGD PMID:8719615 MGI:77774 NCBI chr19:23,520,741...23,819,971
Ensembl chr19:23,520,741...23,823,225
JBrowse link
G Kcne1 potassium voltage-gated channel subfamily E regulatory subunit 1 involved_in ISO MGI:1857442 (MGI:3625254|PMID:11223304) RGD PMID:11223304 MGI:3625254 NCBI chr11:31,580,951...31,594,116
Ensembl chr11:31,580,742...31,593,901
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19834
    developmental process 6965
      anatomical structure development 6376
        neural nucleus development 72
          abducens nucleus development 1
          caudate nucleus development 1
          cochlear nucleus development + 4
          dentate nucleus development 0
          dorsal motor nucleus of vagus nerve development + 0
          emboliform nucleus development 0
          facial nucleus development 3
          fastigial nucleus development 0
          globose nucleus development 0
          globus pallidus development 4
          hypoglossal nucleus development 1
          inferior olivary nucleus development + 0
          inferior raphe nucleus development 0
          inferior reticular formation development 0
          lateral geniculate nucleus development 1
          lateral reticular nucleus development 0
          locus ceruleus development + 1
          nucleus accumbens development 1
          nucleus ambiguus development 0
          putamen development 1
          retrotrapezoid nucleus development + 1
          salivary nucleus development + 0
          solitary nucleus development 0
          substantia nigra development 46
          subthalamic nucleus development 1
          superior olivary nucleus development + 2
          superior raphe nucleus development 0
          trigeminal motor nucleus development 0
          trigeminal sensory nucleus development + 3
          vestibular nucleus development 3
paths to the root