Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:forebrain morphogenesis
go back to main search page
Accession:GO:0048853 term browser browse the term
Definition:The process in which the anatomical structures of the forebrain are generated and organized. The forebrain is the anterior of the three primary divisions of the developing chordate brain or the corresponding part of the adult brain (in vertebrates, includes especially the cerebral hemispheres, the thalamus, and the hypothalamus and especially in higher vertebrates is the main control center for sensory and associative information processing, visceral functions, and voluntary motor functions).
Synonyms:exact_synonym: prosencephalon morphogenesis


show annotations for term's descendants           Sort by:
forebrain morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within IMP (PMID:16613831) MGI PMID:16613831 NCBI chr19:45,724,930...45,731,380
Ensembl chr19:45,725,237...45,731,354 		JBrowse link
G Gak cyclin G associated kinase acts_upstream_of_or_within IMP (PMID:18434600) MGI PMID:18434600 NCBI chr 5:108,716,973...108,777,643
Ensembl chr 5:108,717,277...108,777,621 		JBrowse link
G Gdf7 growth differentiation factor 7 acts_upstream_of_or_within IMP (PMID:10693795) MGI PMID:10693795 NCBI chr12:8,347,918...8,351,954
Ensembl chr12:8,347,918...8,351,954 		JBrowse link
G Gsx2 GS homeobox 2 acts_upstream_of_or_within IMP (PMID:9398437) MGI PMID:9398437 NCBI chr 5:75,236,262...75,238,554
Ensembl chr 5:75,236,262...75,238,554 		JBrowse link
G Hesx1 homeobox gene expressed in ES cells acts_upstream_of_or_within IMP (PMID:10882526), (PMID:9620767) MGI PMID:9620767 PMID:10882526 NCBI chr14:26,716,322...26,724,286
Ensembl chr14:26,716,373...26,724,286 		JBrowse link
G Hhex hematopoietically expressed homeobox acts_upstream_of_or_within IMP (PMID:21445260) MGI PMID:21445260 NCBI chr19:37,423,289...37,429,179
Ensembl chr19:37,423,258...37,429,179 		JBrowse link
G Ift88 intraflagellar transport 88 acts_upstream_of_or_within IMP (PMID:19036983) MGI PMID:19036983 NCBI chr14:57,661,519...57,755,393
Ensembl chr14:57,661,519...57,755,393 		JBrowse link
G Nf1 neurofibromin 1 acts_upstream_of_or_within IMP (PMID:11297510) MGI PMID:11297510 NCBI chr11:79,223,541...79,472,435
Ensembl chr11:79,230,519...79,472,438 		JBrowse link
G Pten phosphatase and tensin homolog involved_in IMP (MGI:3629385|PMID:16675393) BHF-UCL PMID:16675393 MGI:3629385 NCBI chr19:32,734,977...32,803,560
Ensembl chr19:32,734,897...32,803,560 		JBrowse link
G Smo smoothened, frizzled class receptor involved_in IMP (MGI:5142377|PMID:11517919) BHF-UCL PMID:11517919 MGI:5142377 NCBI chr 6:29,735,480...29,761,359
Ensembl chr 6:29,735,502...29,761,364 		JBrowse link
G Tuba1a tubulin, alpha 1A involved_in IMP (PMID:31386652) MGI PMID:31386652 NCBI chr15:98,847,728...98,851,382
Ensembl chr15:98,847,718...98,851,584 		JBrowse link
G Uchl5 ubiquitin carboxyl-terminal esterase L5 involved_in IMP (MGI:4849324|PMID:21048919) BHF-UCL PMID:21048919 MGI:4849324 NCBI chr 1:143,652,993...143,683,204
Ensembl chr 1:143,653,010...143,683,204 		JBrowse link
adenohypophysis morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Duox2 dual oxidase 2 acts_upstream_of_or_within IMP (PMID:17440044) MGI PMID:17440044 NCBI chr 2:122,109,727...122,129,221
Ensembl chr 2:122,109,728...122,128,930 		JBrowse link
diencephalon morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Otx1 orthodenticle homeobox 1 acts_upstream_of_or_within IGI (PMID:20816794) MGI PMID:20816794 NCBI chr11:21,944,764...21,954,044
Ensembl chr11:21,944,764...21,952,897 		JBrowse link
G Otx2 orthodenticle homeobox 2 acts_upstream_of_or_within IGI (PMID:20816794) MGI PMID:20816794 NCBI chr14:48,894,238...48,905,101
Ensembl chr14:48,895,134...48,911,276 		JBrowse link
G Sox2 SRY (sex determining region Y)-box 2 acts_upstream_of_or_within IMP (PMID:15240551) MGI PMID:15240551 NCBI chr 3:34,704,144...34,706,610
Ensembl chr 3:34,704,554...34,706,610 		JBrowse link
hypophysis morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prop1 paired like homeodomain factor 1 acts_upstream_of_or_within IMP (PMID:16678101) MGI PMID:16678101 NCBI chr11:50,841,633...50,844,584
Ensembl chr11:50,841,633...50,844,592 		JBrowse link
G Wnt5a wingless-type MMTV integration site family, member 5A acts_upstream_of_or_within IMP (PMID:15037319) MGI PMID:15037319 NCBI chr14:28,224,962...28,249,405
Ensembl chr14:28,226,707...28,249,405 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28573
    developmental process 7363
      anatomical structure morphogenesis 3037
        forebrain morphogenesis 18
          diencephalon morphogenesis + 6
Path 2
Term Annotations click to browse term
  biological_process 28573
    developmental process 7363
      anatomical structure development 6834
        multicellular organism development 5426
          system development 4651
            nervous system development 2845
              central nervous system development 1218
                brain development 909
                  forebrain development 560
                    forebrain morphogenesis 18
                      diencephalon morphogenesis + 6
paths to the root