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ONTOLOGY REPORT - ANNOTATIONS

Term:otolith development
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Accession:GO:0048840 term browser browse the term
Definition:The process whose specific outcome is the progression of the otolith over time, from its formation to the mature structure.
Synonyms:only_in_taxon: NCBITaxon:7742 ! Vertebrata


show annotations for term's descendants           Sort by:
otolith development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg5 autophagy related 5 acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:3612279 (MGI:4829568|PMID:20577052)
GO_REF:0000107		 RGD
Ensembl		 PMID:20577052 GO_REF:0000107 MGI:4829568 NCBI chr20:47,798,222...47,889,216
Ensembl chr20:47,798,290...47,889,209 		JBrowse link
G Nox3 NADPH oxidase 3 acts_upstream_of_or_within ISO MGI:1856606 (MGI:1351720|PMID:10491954) RGD PMID:10491954 MGI:1351720 NCBI chr 1:44,238,012...44,302,851
Ensembl chr 1:44,236,992...44,302,851 		JBrowse link
otolith formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slc44a4 solute carrier family 44, member 4 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr20:3,903,099...3,919,215
Ensembl chr20:3,903,099...3,919,215 		JBrowse link
otolith mineralization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp2b2 ATPase plasma membrane Ca2+ transporting 2 acts_upstream_of_or_within ISO MGI:1857876 (MGI:1275896|PMID:9668038) RGD PMID:9668038 MGI:1275896 NCBI chr 4:146,896,332...147,140,665
Ensembl chr 4:146,896,332...147,140,665 		JBrowse link
G Oc90 otoconin 90 involved_in ISO (MGI:5896790|PMID:21655225), (MGI:6189500|PMID:24748133) RGD PMID:21655225 PMID:24748133 MGI:5896790 MGI:6189500 NCBI chr 7:97,635,890...97,669,416
Ensembl chr 7:97,635,890...97,669,416 		JBrowse link
G Otol1 otolin 1 involved_in ISO (MGI:5896790|PMID:21655225), (MGI:6189500|PMID:24748133), (MGI:6189669|PMID:29076638) RGD PMID:21655225 PMID:24748133 PMID:29076638 MGI:5896790 MGI:6189500 MGI:6189669 NCBI chr 2:154,339,612...154,349,050
Ensembl chr 2:154,339,612...154,349,023 		JBrowse link
otolith mineralization completed early in development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg4b autophagy related 4B, cysteine peptidase involved_in ISO (MGI:4829568|PMID:20577052) RGD PMID:20577052 MGI:4829568 NCBI chr 9:94,282,417...94,314,109
Ensembl chr 9:94,282,509...94,314,103 		JBrowse link
otolith morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bloc1s5 biogenesis of lysosomal organelles complex 1 subunit 5 acts_upstream_of_or_within ISO MGI:1856106 (MGI:53623|PMID:5367369) RGD PMID:5367369 MGI:53623 NCBI chr17:26,171,965...26,197,276
Ensembl chr17:26,172,018...26,197,251 		JBrowse link
G Lrig1 leucine-rich repeats and immunoglobulin-like domains 1 acts_upstream_of_or_within ISO MGI:2443955 (MGI:5519140|PMID:24086156) RGD PMID:24086156 MGI:5519140 NCBI chr 4:127,130,899...127,230,956
Ensembl chr 4:127,130,898...127,231,513 		JBrowse link
G Lrig3 leucine-rich repeats and immunoglobulin-like domains 3 acts_upstream_of_or_within ISO MGI:107935 (MGI:5519140|PMID:24086156) RGD PMID:24086156 MGI:5519140 NCBI chr 7:61,816,313...61,866,275
Ensembl chr 7:61,816,342...61,866,481 		JBrowse link
G Ttc39c tetratricopeptide repeat domain 39C involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:3,768,802...3,887,932
Ensembl chr18:3,805,183...3,887,930 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19746
    developmental process 6931
      anatomical structure development 6386
        otolith development 11
          otolith mineralization + 4
          otolith morphogenesis + 5
          otolith tethering 0
Path 2
Term Annotations click to browse term
  biological_process 19746
    developmental process 6931
      anatomical structure development 6386
        animal organ development 3647
          sensory organ development 720
            ear development 276
              inner ear development 245
                otolith development 11
                  otolith mineralization + 4
                  otolith morphogenesis + 5
                  otolith tethering 0
paths to the root