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ONTOLOGY REPORT - ANNOTATIONS


Term:otolith development
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Accession:GO:0048840 term browser browse the term
Definition:The process whose specific outcome is the progression of the otolith over time, from its formation to the mature structure.
Synonyms:only_in_taxon: NCBITaxon:7742 ! Vertebrata



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otolith development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg5 autophagy related 5 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3612279 (MGI:4829568|PMID:20577052)
Ensembl
RGD
PMID:20577052 GO_REF:0000107 MGI:4829568 NCBI chr20:47,798,222...47,889,216
Ensembl chr20:47,798,290...47,889,209
JBrowse link
G Nox3 NADPH oxidase 3 acts_upstream_of_or_within ISO MGI:1856606 (MGI:1351720|PMID:10491954) RGD PMID:10491954 MGI:1351720 NCBI chr 1:44,238,012...44,302,851
Ensembl chr 1:44,236,992...44,302,851
JBrowse link
otolith formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slc44a4 solute carrier family 44, member 4 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr20:3,903,099...3,919,215
Ensembl chr20:3,903,099...3,919,215
JBrowse link
otolith mineralization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp2b2 ATPase plasma membrane Ca2+ transporting 2 acts_upstream_of_or_within ISO MGI:1857876 (MGI:1275896|PMID:9668038) RGD PMID:9668038 MGI:1275896 NCBI chr 4:146,896,332...147,140,665
Ensembl chr 4:146,896,332...147,140,665
JBrowse link
G Oc90 otoconin 90 involved_in ISO (MGI:5896790|PMID:21655225), (MGI:6189500|PMID:24748133) RGD PMID:21655225 PMID:24748133 MGI:5896790 MGI:6189500 NCBI chr 7:97,635,890...97,669,416
Ensembl chr 7:97,635,890...97,669,416
JBrowse link
G Otol1 otolin 1 involved_in ISO (MGI:5896790|PMID:21655225), (MGI:6189500|PMID:24748133), (MGI:6189669|PMID:29076638) RGD PMID:21655225 PMID:24748133 PMID:29076638 MGI:5896790 MGI:6189500 MGI:6189669 NCBI chr 2:154,339,612...154,349,050
Ensembl chr 2:154,339,612...154,349,023
JBrowse link
otolith mineralization completed early in development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atg4b autophagy related 4B, cysteine peptidase involved_in ISO (MGI:4829568|PMID:20577052) RGD PMID:20577052 MGI:4829568 NCBI chr 9:94,282,417...94,314,109
Ensembl chr 9:94,282,509...94,314,103
JBrowse link
otolith morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bloc1s5 biogenesis of lysosomal organelles complex 1 subunit 5 acts_upstream_of_or_within ISO MGI:1856106 (MGI:53623|PMID:5367369) RGD PMID:5367369 MGI:53623 NCBI chr17:26,171,965...26,197,276
Ensembl chr17:26,172,018...26,197,251
JBrowse link
G Lrig1 leucine-rich repeats and immunoglobulin-like domains 1 acts_upstream_of_or_within ISO MGI:2443955 (MGI:5519140|PMID:24086156) RGD PMID:24086156 MGI:5519140 NCBI chr 4:127,130,899...127,230,956
Ensembl chr 4:127,130,898...127,231,513
JBrowse link
G Lrig3 leucine-rich repeats and immunoglobulin-like domains 3 acts_upstream_of_or_within ISO MGI:107935 (MGI:5519140|PMID:24086156) RGD PMID:24086156 MGI:5519140 NCBI chr 7:61,816,313...61,866,275
Ensembl chr 7:61,816,342...61,866,481
JBrowse link
G Ttc39c tetratricopeptide repeat domain 39C involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:3,768,802...3,887,932
Ensembl chr18:3,805,183...3,887,930
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19834
    developmental process 6965
      anatomical structure development 6376
        otolith development 11
          otolith mineralization + 4
          otolith morphogenesis + 5
          otolith tethering 0
Path 2
Term Annotations click to browse term
  biological_process 19834
    developmental process 6965
      anatomical structure development 6376
        multicellular organism development 5800
          system development 5439
            animal organ development 4194
              sensory organ development 708
                ear development 276
                  inner ear development 247
                    otolith development 11
                      otolith mineralization + 4
                      otolith morphogenesis + 5
                      otolith tethering 0
paths to the root