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ONTOLOGY REPORT - ANNOTATIONS


Term:inner ear development
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Accession:GO:0048839 term browser browse the term
Definition:The process whose specific outcome is the progression of the inner ear over time, from its formation to the mature structure.



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inner ear development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADGRV1 adhesion G protein-coupled receptor V1 acts_upstream_of_or_within ISO (PMID:16775142) MGI PMID:16775142 NCBI chr 3:17,866,459...18,351,532
Ensembl chr 3:17,866,808...18,351,532
JBrowse link
G ANP32B acidic nuclear phosphoprotein 32 family member B involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21636789) Ensembl
MGI
PMID:21636789 GO_REF:0000107 NCBI chr11:55,230,017...55,272,744
Ensembl chr11:55,243,854...55,350,194
JBrowse link
G ATOH1 atonal bHLH transcription factor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21146598) Ensembl
MGI
PMID:21146598 GO_REF:0000107 NCBI chr32:16,807,217...16,809,294
Ensembl chr32:16,807,336...16,808,406
JBrowse link
G ATP2B2 ATPase plasma membrane Ca2+ transporting 2 acts_upstream_of_or_within ISO (PMID:11875276) MGI PMID:11875276 NCBI chr20:7,665,468...8,037,407
Ensembl chr20:7,749,807...8,034,474
JBrowse link
G B9D2 B9 domain containing 2 ISO RGD PMID:16479080 RGD:2302094 NCBI chr 1:112,621,832...112,627,726
Ensembl chr 1:112,621,633...112,643,885
JBrowse link
G BDNF brain derived neurotrophic factor acts_upstream_of_or_within ISO (PMID:7605630) MGI PMID:7605630 NCBI chr21:48,191,580...48,243,699
Ensembl chr21:48,192,670...48,204,480
JBrowse link
G BMP2 bone morphogenetic protein 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21795542) Ensembl
MGI
PMID:21795542 GO_REF:0000107 NCBI chr24:15,199,667...15,211,509
Ensembl chr24:15,200,291...15,212,217
JBrowse link
G BMPER BMP binding endothelial regulator acts_upstream_of_or_within ISO (PMID:21795542) MGI PMID:21795542 NCBI chr14:45,910,634...46,154,922
Ensembl chr14:45,910,739...46,153,501
JBrowse link
G C1QB complement C1q B chain involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21795542) Ensembl
MGI
PMID:21795542 GO_REF:0000107 NCBI chr 2:76,650,440...76,655,546
Ensembl chr 2:76,650,586...76,655,549
JBrowse link
G C1QTNF5 C1q and TNF related 5 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21795542) Ensembl
MGI
PMID:21795542 GO_REF:0000107 NCBI chr 5:14,561,115...14,563,277
Ensembl chr 5:14,562,350...14,563,309
JBrowse link
G CCM2 CCM2 scaffold protein involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21795542) Ensembl
MGI
PMID:21795542 GO_REF:0000107 NCBI chr16:10,347,801...10,392,560
Ensembl chr16:10,347,145...10,394,594
JBrowse link
G CDH23 cadherin related 23 acts_upstream_of_or_within ISO (PMID:14759567)
(PMID:13336002)
(PMID:8790740)
MGI PMID:8790740 PMID:13336002 PMID:14759567 MGI:79257 NCBI chr 4:22,206,972...22,570,875
Ensembl chr 4:22,207,001...22,571,131
JBrowse link
G CDKN1B cyclin dependent kinase inhibitor 1B involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:10079221) Ensembl
MGI
PMID:10079221 GO_REF:0000107 NCBI chr27:33,609,154...33,613,558
Ensembl chr27:33,611,760...33,612,906
JBrowse link
G CEBPA CCAAT enhancer binding protein alpha acts_upstream_of_or_within ISO (PMID:21795542) MGI PMID:21795542 NCBI chr 1:118,846,252...118,851,045 JBrowse link
G CEBPD CCAAT enhancer binding protein delta acts_upstream_of_or_within ISO (PMID:21795542) MGI PMID:21795542 NCBI chr35:74,994...77,816 JBrowse link
G COL2A1 collagen type II alpha 1 chain involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:10100048) Ensembl
MGI
PMID:10100048 GO_REF:0000107 NCBI chr27:6,756,994...6,787,733
Ensembl chr27:6,756,994...6,787,733
JBrowse link
G CXCL14 C-X-C motif chemokine ligand 14 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21795542) Ensembl
MGI
PMID:21795542 GO_REF:0000107 NCBI chr11:23,598,640...23,606,850
Ensembl chr11:23,599,645...23,606,823
JBrowse link
G CYS1 cystin 1 acts_upstream_of_or_within ISO (PMID:1952600) MGI PMID:1952600 NCBI chr17:7,057,240...7,063,410 JBrowse link
G CYTL1 cytokine like 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21795542) Ensembl
MGI
PMID:21795542 GO_REF:0000107 NCBI chr 3:70,354,099...70,358,521
Ensembl chr 3:70,354,090...70,359,128
JBrowse link
G DLA-DMA major histocompatibility complex, class II, DM alpha acts_upstream_of_or_within ISO (PMID:21795542) MGI PMID:21795542 NCBI chr12:2,516,974...2,534,085
Ensembl chr12:2,503,325...2,533,990
JBrowse link
G DLL1 delta like canonical Notch ligand 1 acts_upstream_of_or_within ISO (PMID:16495313) MGI PMID:16495313 NCBI chr12:72,265,078...72,272,347
Ensembl chr12:72,265,682...72,272,348
JBrowse link
G DUOX2 dual oxidase 2 acts_upstream_of_or_within ISO (PMID:17440044) MGI PMID:17440044 NCBI chr30:11,521,833...11,541,719
Ensembl chr30:11,521,845...11,541,716
JBrowse link
G ESRRB estrogen related receptor beta involved_in ISO (PMID:17765677) UniProt PMID:17765677 NCBI chr 8:49,253,877...49,424,148
Ensembl chr 8:49,253,332...49,421,332
JBrowse link
G EYA4 EYA transcriptional coactivator and phosphatase 4 ISO RGD PMID:11159937 RGD:1598918 NCBI chr 1:26,208,514...26,514,601
Ensembl chr 1:26,272,448...26,514,201
JBrowse link
G FGFR3 fibroblast growth factor receptor 3 acts_upstream_of_or_within ISO (PMID:17117437) MGI PMID:17117437 NCBI chr 3:62,309,128...62,318,932
Ensembl chr 3:62,303,756...62,323,896
JBrowse link
G FREM2 FRAS1 related extracellular matrix 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21795542) Ensembl
MGI
PMID:21795542 GO_REF:0000107 NCBI chr25:2,097,264...2,264,049
Ensembl chr25:2,102,849...2,264,456
JBrowse link
G GJB2 gap junction protein beta 2 ISO RGD PMID:10570462 RGD:1599834 NCBI chr25:17,952,851...17,958,289
Ensembl chr25:17,952,851...17,958,289
JBrowse link
G GJB6 gap junction protein beta 6 ISO RGD PMID:10570462 RGD:1599834 NCBI chr25:17,912,036...17,922,310
Ensembl chr25:17,911,262...17,921,605
JBrowse link
G GLI3 GLI family zinc finger 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:17395647) Ensembl
MGI
PMID:17395647 GO_REF:0000107 NCBI chr18:7,800,817...8,071,531
Ensembl chr18:7,801,394...8,068,132
JBrowse link
G GRXCR1 glutaredoxin and cysteine rich domain containing 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:13336002) Ensembl
MGI
PMID:13336002 GO_REF:0000107 NCBI chr13:39,766,910...39,882,076
Ensembl chr13:39,766,919...39,882,086
JBrowse link
G HOXA1 homeobox A1 involved_in ISO (PMID:16155570) DFLAT PMID:16155570 NCBI chr14:40,267,033...40,272,212
Ensembl chr14:40,267,528...40,269,681
JBrowse link
G HOXA13 homeobox A13 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:18483557) Ensembl
MGI
PMID:18483557 GO_REF:0000107 NCBI chr14:40,371,234...40,375,261
Ensembl chr14:40,373,059...40,375,980
JBrowse link
G HPCA hippocalcin involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21795542) Ensembl
MGI
PMID:21795542 GO_REF:0000107 NCBI chr 2:68,464,631...68,473,661
Ensembl chr 2:68,465,280...68,473,310
JBrowse link
G IGF1 insulin like growth factor 1 acts_upstream_of_or_within ISO (PMID:21795542) MGI PMID:21795542 NCBI chr15:41,203,320...41,275,964
Ensembl chr15:41,202,518...41,275,794
JBrowse link
G IGFBP7 insulin like growth factor binding protein 7 acts_upstream_of_or_within ISO (PMID:21795542) MGI PMID:21795542 NCBI chr13:49,138,406...49,207,235
Ensembl chr13:49,138,402...49,207,394
JBrowse link
G JAG1 jagged canonical Notch ligand 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr24:11,656,926...11,693,146
Ensembl chr24:11,657,416...11,692,199
JBrowse link
G KCNQ1 potassium voltage-gated channel subfamily Q member 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:15385447) Ensembl
MGI
PMID:15385447 GO_REF:0000107 NCBI chr18:46,554,390...46,830,533
Ensembl chr18:46,518,908...46,830,043
JBrowse link
G LGR5 leucine rich repeat containing G protein-coupled receptor 5 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21795542) Ensembl
MGI
PMID:21795542 GO_REF:0000107 NCBI chr10:13,009,028...13,136,685
Ensembl chr10:13,007,843...13,136,998
JBrowse link
G LHX3 LIM homeobox 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:49,248,555...49,254,128
Ensembl chr 9:49,248,621...49,254,118
JBrowse link
G LIN7A lin-7 homolog A, crumbs cell polarity complex component involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21795542) Ensembl
MGI
PMID:21795542 GO_REF:0000107 NCBI chr15:23,101,524...23,186,343
Ensembl chr15:23,111,944...23,187,354
JBrowse link
G LOC488622 myeloid cell nuclear differentiation antigen acts_upstream_of_or_within ISO (PMID:21795542) MGI PMID:21795542 NCBI chr38:22,874,345...22,892,362 JBrowse link
G LRP10 LDL receptor related protein 10 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21795542) Ensembl
MGI
PMID:21795542 GO_REF:0000107 NCBI chr 8:3,208,710...3,214,888
Ensembl chr 8:3,208,269...3,382,311
JBrowse link
G MAF MAF bZIP transcription factor involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21795542) Ensembl
MGI
PMID:21795542 GO_REF:0000107 NCBI chr 5:71,965,291...71,982,903
Ensembl chr 5:71,965,500...71,981,735
JBrowse link
G MAPKAPK2 MAPK activated protein kinase 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21795542) Ensembl
MGI
PMID:21795542 GO_REF:0000107 NCBI chr 7:5,873,088...5,903,484
Ensembl chr 7:5,814,201...5,902,220
JBrowse link
G MPV17 mitochondrial inner membrane protein MPV17 involved_in ISO (PMID:16041630) UniProt PMID:16041630 NCBI chr17:21,280,523...21,290,967
Ensembl chr17:21,281,361...21,290,339
JBrowse link
G MSX1 msh homeobox 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:70,232,790...70,236,295
Ensembl chr 3:70,232,052...70,236,447
JBrowse link
G MYO3A myosin IIIA acts_upstream_of_or_within ISO (PMID:21165622) MGI PMID:21165622 NCBI chr 2:7,455,125...7,695,483
Ensembl chr 2:7,455,625...7,696,043
JBrowse link
G MYO6 myosin VI acts_upstream_of_or_within ISO (PMID:10525338), (PMID:5980120), (PMID:7493015) MGI PMID:5980120 PMID:7493015 PMID:10525338 NCBI chr12:37,359,200...37,502,342
Ensembl chr12:37,413,570...37,500,724
JBrowse link
G MYO7A myosin VIIA involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:13336002), (PMID:14198707), (PMID:6627025)
(PMID:9435277)
Ensembl
MGI
PMID:6627025 PMID:9435277 PMID:13336002 PMID:14198707 GO_REF:0000107 MGI:63006 NCBI chr21:21,539,735...21,624,063
Ensembl chr21:21,539,785...21,624,279
JBrowse link
G NEUROD1 neuronal differentiation 1 involved_in ISO (PMID:11152640) UniProt PMID:11152640 NCBI chr36:24,853,591...24,857,886 JBrowse link
G NEUROG1 neurogenin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:23,563,128...23,564,819
Ensembl chr11:23,563,803...23,564,543
JBrowse link
G NHERF2 NHERF family PDZ scaffold protein 2 ISO RGD PMID:16160858 RGD:1643220 NCBI chr 6:38,905,070...38,915,028
Ensembl chr 6:38,905,635...38,942,774
JBrowse link
G PCDH15 protocadherin related 15 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:15811708)
(PMID:10978835)
InterPro
MGI
PMID:10978835 PMID:15811708 GO_REF:0000002 NCBI chr26:33,426,728...34,589,208
Ensembl chr26:33,719,839...34,588,017
JBrowse link
G PDGFA platelet derived growth factor subunit A ISO RGD PMID:15267171 RGD:2292167 NCBI chr 6:16,271,082...16,293,246
Ensembl chr 6:16,270,104...16,292,396
JBrowse link
G PDGFRA platelet derived growth factor receptor alpha ISO RGD PMID:15267171 RGD:2292167 NCBI chr13:46,729,722...46,775,828
Ensembl chr13:46,730,703...46,773,278
JBrowse link
G PDGFRB platelet derived growth factor receptor beta ISO RGD PMID:15267171 RGD:2292167 NCBI chr 4:58,925,922...58,963,639
Ensembl chr 4:58,926,351...58,962,283
JBrowse link
G PHOX2B paired like homeobox 2B involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:12885554) Ensembl
MGI
PMID:12885554 GO_REF:0000107 NCBI chr13:38,865,963...38,869,912
Ensembl chr13:38,865,995...38,869,854
JBrowse link
G PI4KB phosphatidylinositol 4-kinase beta involved_in IEA
IBA
Ensembl
GO_Central
GO_REF:0000033 GO_REF:0000107 NCBI chr17:60,359,545...60,386,093
Ensembl chr17:60,360,236...60,384,778
JBrowse link
G PLPPR4 phospholipid phosphatase related 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21795542) Ensembl
MGI
PMID:21795542 GO_REF:0000107 NCBI chr 6:50,553,769...50,594,298
Ensembl chr 6:50,554,949...50,594,383
JBrowse link
G POU3F4 POU class 3 homeobox 4 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:10587581)
(PMID:15655183)
MGI
Ensembl
PMID:10587581 PMID:15655183 GO_REF:0000107 NCBI chr  X:64,427,161...64,428,825
Ensembl chr  X:64,427,325...64,428,410
JBrowse link
G POU4F3 POU class 4 homeobox 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:9256502), (PMID:9735355) Ensembl
MGI
PMID:9256502 PMID:9735355 GO_REF:0000107 NCBI chr 2:40,762,499...40,764,131
Ensembl chr 2:40,762,477...40,765,161
JBrowse link
G PROX1 prospero homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:20186345) Ensembl
MGI
PMID:20186345 GO_REF:0000107 NCBI chr 7:11,996,282...12,047,693
Ensembl chr 7:11,996,703...12,044,036
JBrowse link
G PTPN11 protein tyrosine phosphatase non-receptor type 11 involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:9,989,218...10,072,245
Ensembl chr26:9,989,425...10,067,481
JBrowse link
G REM2 RRAD and GEM like GTPase 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:3,215,023...3,223,470
Ensembl chr 8:3,208,269...3,382,311
JBrowse link
G ROR1 receptor tyrosine kinase like orphan receptor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:46,010,097...46,477,882
Ensembl chr 5:46,013,195...46,190,880
JBrowse link
G SHH sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:17395647) Ensembl
MGI
PMID:17395647 GO_REF:0000107 NCBI chr16:18,650,553...18,663,571
Ensembl chr16:18,484,809...18,662,903
JBrowse link
G SIX1 SIX homeobox 1 involved_in ISS
IEA
UniProt
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr 8:35,676,705...35,679,534
Ensembl chr 8:35,676,479...35,679,534
JBrowse link
G SLC25A27 solute carrier family 25 member 27 ISO RGD PMID:21397696 RGD:6482846 NCBI chr12:14,818,385...14,846,688
Ensembl chr12:14,818,541...14,846,700
JBrowse link
G SOX2 SRY-box transcription factor 2 involved_in ISO (PMID:18407919) UniProt PMID:18407919 NCBI chr34:14,853,000...14,855,153 JBrowse link
G SPARC secreted protein acidic and cysteine rich ISO RGD PMID:11335086 RGD:2300061 NCBI chr 4:57,659,541...57,682,147
Ensembl chr 4:57,659,650...57,681,711
JBrowse link
G STOX1 storkhead box 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:20,013,893...20,065,480
Ensembl chr 4:20,014,007...20,060,394
JBrowse link
G TGFB2 transforming growth factor beta 2 involved_in ISO (PMID:9217007) RGD
BHF-UCL
PMID:9217007 PMID:16479080 RGD:2302094 NCBI chr38:13,430,832...13,511,655
Ensembl chr38:13,429,148...13,510,242
JBrowse link
G TGFB3 transforming growth factor beta 3 ISO RGD PMID:16479080 RGD:2302094 NCBI chr 8:48,920,874...48,946,037
Ensembl chr 8:48,923,423...48,945,816
JBrowse link
G TIFAB TIFA inhibitor involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:23,492,317...23,495,825
Ensembl chr11:23,492,867...23,493,352
JBrowse link
anterior semicircular canal development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GLI3 GLI family zinc finger 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:17395647) Ensembl
MGI
PMID:17395647 GO_REF:0000107 NCBI chr18:7,800,817...8,071,531
Ensembl chr18:7,801,394...8,068,132
JBrowse link
auditory receptor cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CLRN1 clarin 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:19414487) Ensembl
MGI
PMID:19414487 GO_REF:0000107 NCBI chr23:45,512,639...45,551,010
Ensembl chr23:45,513,416...45,551,178
JBrowse link
G ELMOD3 ELMO domain containing 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:31628468) MGI
Ensembl
PMID:31628468 GO_REF:0000107 NCBI chr17:39,642,101...39,668,079
Ensembl chr17:39,643,676...39,665,726
JBrowse link
G FGFR1 fibroblast growth factor receptor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:15630379) Ensembl
MGI
PMID:15630379 GO_REF:0000107 NCBI chr16:27,029,902...27,080,514
Ensembl chr16:27,031,588...27,078,261
JBrowse link
G KCNQ1 potassium voltage-gated channel subfamily Q member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:46,554,390...46,830,533
Ensembl chr18:46,518,908...46,830,043
JBrowse link
G LOC106560171 transmembrane O-methyltransferase involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:25,975,547...25,981,097 JBrowse link
G LOC477647 ALG10 alpha-1,2-glucosyltransferase involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:24303013) Ensembl
MGI
PMID:24303013 GO_REF:0000107 NCBI chr27:15,121,327...15,127,229 JBrowse link
G PAFAH1B1 platelet activating factor acetylhydrolase 1b regulatory subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:46,648,057...46,731,259
Ensembl chr 9:46,648,052...46,771,400
JBrowse link
G PDZD7 PDZ domain containing 7 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:24334608) Ensembl
MGI
PMID:24334608 GO_REF:0000107 NCBI chr28:13,693,032...13,711,654
Ensembl chr28:13,693,023...13,711,784
JBrowse link
G SLC4A7 solute carrier family 4 member 7 acts_upstream_of_or_within
involved_in
ISO
IBA
(PMID:12808454) MGI
GO_Central
PMID:12808454 GO_REF:0000033 NCBI chr23:16,710,649...16,788,277
Ensembl chr23:16,710,701...16,785,541
JBrowse link
G TMC1 transmembrane channel like 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:22105175) Ensembl
MGI
PMID:22105175 GO_REF:0000107 NCBI chr 1:85,041,039...85,159,607
Ensembl chr 1:85,041,574...85,187,369
JBrowse link
auditory receptor cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G JAG2 jagged canonical Notch ligand 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:72,535,539...72,553,531
Ensembl chr 8:72,535,107...72,550,322
JBrowse link
G NOTCH1 notch receptor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:19154718) Ensembl
MGI
PMID:19154718 GO_REF:0000107 NCBI chr 9:48,975,972...49,018,985
Ensembl chr 9:48,974,757...49,017,277
JBrowse link
G RBPJ recombination signal binding protein for immunoglobulin kappa J region involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:19154718) Ensembl
MGI
PMID:19154718 GO_REF:0000107 NCBI chr 3:84,060,417...84,286,008
Ensembl chr 3:84,064,440...84,286,360
JBrowse link
auditory receptor cell fate determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATOH1 atonal bHLH transcription factor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16407553) Ensembl
MGI
PMID:16407553 GO_REF:0000107 NCBI chr32:16,807,217...16,809,294
Ensembl chr32:16,807,336...16,808,406
JBrowse link
auditory receptor cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATOH1 atonal bHLH transcription factor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:10364557) Ensembl
MGI
PMID:10364557 GO_REF:0000107 NCBI chr32:16,807,217...16,809,294
Ensembl chr32:16,807,336...16,808,406
JBrowse link
auditory receptor cell morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MIR96 microRNA mir-96 acts_upstream_of_or_within ISO (PMID:19363478) MGI PMID:19363478 NCBI chr14:7,068,754...7,068,842
Ensembl chr14:7,068,754...7,068,842
JBrowse link
G RAC1 Rac family small GTPase 1 acts_upstream_of_or_within ISO (PMID:20016102) MGI PMID:20016102 NCBI chr 6:11,726,259...11,758,532
Ensembl chr 6:11,655,494...11,757,216
JBrowse link
G SCRIB scribble planar cell polarity protein involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:20215345) Ensembl
MGI
PMID:20215345 GO_REF:0000107 NCBI chr13:37,356,405...37,374,765
Ensembl chr13:37,356,405...37,374,681
JBrowse link
G SEC24B SEC24 homolog B, COPII coat complex component involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:20215345) Ensembl
MGI
PMID:20215345 GO_REF:0000107 NCBI chr32:29,671,702...29,766,628
Ensembl chr32:29,671,738...29,772,192
JBrowse link
G SLITRK6 SLIT and NTRK like family member 6 acts_upstream_of_or_within ISO (PMID:19936227) MGI PMID:19936227 NCBI chr22:37,911,533...37,918,273
Ensembl chr22:37,912,612...37,925,177
JBrowse link
G USH1C USH1 protein network component harmonin involved_in IBA GO_Central GO_REF:0000033 NCBI chr21:40,055,786...40,100,685
Ensembl chr21:40,055,730...40,101,430
JBrowse link
G WDPCP WD repeat containing planar cell polarity effector involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:24302887) Ensembl
MGI
PMID:24302887 GO_REF:0000107 NCBI chr10:62,894,818...63,316,555
Ensembl chr10:62,877,527...63,316,345
JBrowse link
auditory receptor cell stereocilium organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANKRD24 ankyrin repeat domain 24 involved_in ISO (PMID:35175278) UniProt PMID:35175278 NCBI chr20:55,391,381...55,404,538
Ensembl chr20:55,391,652...55,404,544
JBrowse link
G ATP2B2 ATPase plasma membrane Ca2+ transporting 2 acts_upstream_of_or_within ISO (PMID:11875276) MGI PMID:11875276 NCBI chr20:7,665,468...8,037,407
Ensembl chr20:7,749,807...8,034,474
JBrowse link
G CDH23 cadherin related 23 acts_upstream_of_or_within ISO (PMID:11138008), (PMID:17050716), (PMID:23217710)
(PMID:15537665)
(PMID:7610888), (PMID:8790740), (PMID:9039475)
(PMID:12121736)
(PMID:11322776)
MGI PMID:7610888 PMID:8790740 PMID:9039475 PMID:11138008 PMID:11322776 More... NCBI chr 4:22,206,972...22,570,875
Ensembl chr 4:22,207,001...22,571,131
JBrowse link
G CLIC5 chloride intracellular channel 5 acts_upstream_of_or_within ISO (PMID:17021174) MGI PMID:17021174 NCBI chr12:14,160,524...14,318,174
Ensembl chr12:14,144,390...14,318,582
JBrowse link
G CLRN1 clarin 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:19414487), (PMID:19423712) Ensembl
MGI
PMID:19414487 PMID:19423712 GO_REF:0000107 NCBI chr23:45,512,639...45,551,010
Ensembl chr23:45,513,416...45,551,178
JBrowse link
G CLRN2 clarin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:62,958,242...62,967,878
Ensembl chr 3:62,959,224...62,967,994
JBrowse link
G GRXCR1 glutaredoxin and cysteine rich domain containing 1 acts_upstream_of_or_within ISO (PMID:35235570) MGI PMID:35235570 NCBI chr13:39,766,910...39,882,076
Ensembl chr13:39,766,919...39,882,086
JBrowse link
G GRXCR2 glutaredoxin and cysteine rich domain containing 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:30380417) Ensembl
MGI
PMID:30380417 GO_REF:0000107 NCBI chr 2:40,310,285...40,330,200
Ensembl chr 2:40,315,807...40,328,240
JBrowse link
G LHFPL5 LHFPL tetraspan subfamily member 5 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:17876667), (PMID:23217710)
(PMID:15905332)
Ensembl
MGI
PMID:15905332 PMID:17876667 PMID:23217710 GO_REF:0000107 NCBI chr12:4,919,732...4,936,823
Ensembl chr12:4,902,832...4,936,413
JBrowse link
G MYO3A myosin IIIA involved_in ISO (PMID:26754646) MGI PMID:26754646 NCBI chr 2:7,455,125...7,695,483
Ensembl chr 2:7,455,625...7,696,043
JBrowse link
G MYO3B myosin IIIB involved_in ISO (PMID:26754646) MGI PMID:26754646 NCBI chr36:14,804,662...15,229,597
Ensembl chr36:14,803,514...15,209,820
JBrowse link
G MYO7A myosin VIIA involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:17050716)
(PMID:11753415)
(PMID:12121736)
Ensembl
MGI
PMID:11753415 PMID:12121736 PMID:17050716 GO_REF:0000107 NCBI chr21:21,539,735...21,624,063
Ensembl chr21:21,539,785...21,624,279
JBrowse link
G NHERF1 NHERF family PDZ scaffold protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:24920589) Ensembl
MGI
PMID:24920589 GO_REF:0000107 NCBI chr 9:5,661,792...5,679,783
Ensembl chr 9:5,662,464...5,679,570
JBrowse link
G PCDH15 protocadherin related 15 acts_upstream_of_or_within ISO (PMID:16887306)
(PMID:10978835)
(PMID:11124469)
(PMID:15537665)
(PMID:23217710)
MGI PMID:10978835 PMID:11124469 PMID:15537665 PMID:16887306 PMID:23217710 NCBI chr26:33,426,728...34,589,208
Ensembl chr26:33,719,839...34,588,017
JBrowse link
G PDZD7 PDZ domain containing 7 involved_in
acts_upstream_of_or_within
IEA
IBA
ISO
(PMID:24334608) Ensembl
GO_Central
MGI
PMID:24334608 GO_REF:0000033 GO_REF:0000107 NCBI chr28:13,693,032...13,711,654
Ensembl chr28:13,693,023...13,711,784
JBrowse link
G PLS1 plastin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr23:38,243,631...38,347,195
Ensembl chr23:38,243,024...38,347,202
JBrowse link
G REST RE1 silencing transcription factor involved_in ISO (PMID:29961578) UniProt PMID:29961578 NCBI chr13:49,041,082...49,062,596
Ensembl chr13:49,041,047...49,059,388
JBrowse link
G RIPOR2 RHO family interacting cell polarization regulator 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr35:22,823,053...23,041,765
Ensembl chr35:22,824,106...23,041,743
JBrowse link
G SCRIB scribble planar cell polarity protein involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:20215345) Ensembl
MGI
PMID:20215345 GO_REF:0000107 NCBI chr13:37,356,405...37,374,765
Ensembl chr13:37,356,405...37,374,681
JBrowse link
G SEC24B SEC24 homolog B, COPII coat complex component involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:20215345) Ensembl
MGI
PMID:20215345 GO_REF:0000107 NCBI chr32:29,671,702...29,766,628
Ensembl chr32:29,671,738...29,772,192
JBrowse link
G SOD1 superoxide dismutase 1 acts_upstream_of_or_within ISO (PMID:10464373), (PMID:10466888) MGI PMID:10464373 PMID:10466888 NCBI chr31:26,540,291...26,544,212
Ensembl chr31:26,486,274...26,662,815
JBrowse link
G STRC stereocilin involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:30801007)
(PMID:18849963)
Ensembl
MGI
PMID:18849963 PMID:30801007 GO_REF:0000107 NCBI chr30:10,444,726...10,459,058
Ensembl chr30:10,444,793...10,460,785
JBrowse link
G TECTA tectorin alpha involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:30801007) Ensembl
MGI
PMID:30801007 GO_REF:0000107 NCBI chr 5:12,879,963...12,949,211
Ensembl chr 5:12,879,951...12,949,147
JBrowse link
G TPRN taperin involved_in
acts_upstream_of_or_within
IEA
IBA
ISO
(PMID:30380417) Ensembl
GO_Central
MGI
PMID:30380417 GO_REF:0000033 GO_REF:0000107
G TRIOBP TRIO and F-actin binding protein acts_upstream_of_or_within ISO (PMID:20510926) MGI PMID:20510926 NCBI chr10:26,856,981...26,913,330
Ensembl chr10:26,857,678...26,911,083
JBrowse link
G WHRN whirlin involved_in
acts_upstream_of_or_within
IEA
IBA
ISO
(PMID:27117407) Ensembl
GO_Central
MGI
PMID:27117407 GO_REF:0000033 GO_REF:0000107 NCBI chr11:68,617,383...68,699,824
Ensembl chr11:68,617,377...68,699,977
JBrowse link
cochlea development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADAM10 ADAM metallopeptidase domain 10 involved_in IEA Ensembl GO_REF:0000107 NCBI chr30:23,605,724...23,732,038
Ensembl chr30:23,606,517...23,731,823
JBrowse link
G ATP2B2 ATPase plasma membrane Ca2+ transporting 2 involved_in ISO (PMID:9668038) DFLAT PMID:9668038 NCBI chr20:7,665,468...8,037,407
Ensembl chr20:7,749,807...8,034,474
JBrowse link
G CALB1 calbindin 1 ISO RGD PMID:16120789 RGD:7175527 NCBI chr29:35,551,836...35,572,985
Ensembl chr29:35,552,436...35,572,925
JBrowse link
G CCNA2 cyclin A2 ISO RGD PMID:19429027 RGD:10054469 NCBI chr19:18,317,866...18,324,592
Ensembl chr19:18,318,004...18,323,691
JBrowse link
G CDH1 cadherin 1 acts_upstream_of_or_within
involved_in
ISO (PMID:21925491)
(PMID:30639848)
MGI
UniProt
PMID:21925491 PMID:30639848 NCBI chr 5:80,757,508...80,834,878
Ensembl chr 5:80,757,508...80,834,878
JBrowse link
G CDH23 cadherin related 23 acts_upstream_of_or_within ISO (PMID:13336002) MGI PMID:13336002 NCBI chr 4:22,206,972...22,570,875
Ensembl chr 4:22,207,001...22,571,131
JBrowse link
G CECR2 CECR2 histone acetyl-lysine reader involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21246654) Ensembl
MGI
PMID:21246654 GO_REF:0000107 NCBI chr27:45,125,909...45,193,577
Ensembl chr27:45,125,723...45,188,890
JBrowse link
G DCHS1 dachsous cadherin-related 1 acts_upstream_of_or_within ISO (PMID:21303848) MGI PMID:21303848 NCBI chr21:29,927,713...29,955,742
Ensembl chr21:29,928,176...29,948,713
JBrowse link
G EPHA4 EPH receptor A4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr37:27,670,143...27,809,642
Ensembl chr37:27,677,566...27,809,646
JBrowse link
G FGFR3 fibroblast growth factor receptor 3 acts_upstream_of_or_within ISO (PMID:17557302) MGI PMID:17557302 NCBI chr 3:62,309,128...62,318,932
Ensembl chr 3:62,303,756...62,323,896
JBrowse link
G GABRA5 gamma-aminobutyric acid type A receptor subunit alpha5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:33,663,414...33,746,120
Ensembl chr 3:33,664,169...33,744,328
JBrowse link
G GABRB2 gamma-aminobutyric acid type A receptor subunit beta2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:49,342,527...49,579,697
Ensembl chr 4:49,342,508...49,578,092
JBrowse link
G GABRB3 gamma-aminobutyric acid type A receptor subunit beta3 involved_in ISO (PMID:17021187) DFLAT PMID:17021187 NCBI chr 3:33,878,948...34,101,987
Ensembl chr 3:33,878,904...34,097,764
JBrowse link
G GATA2 GATA binding protein 2 ISO RGD PMID:20006695 RGD:9479067 NCBI chr20:2,472,251...2,488,380
Ensembl chr20:2,473,912...2,480,991
JBrowse link
G GATA3 GATA binding protein 3 ISO RGD PMID:20006695 RGD:9479067 NCBI chr 2:28,068,143...28,098,445
Ensembl chr 2:28,069,051...28,087,760
JBrowse link
G GRXCR1 glutaredoxin and cysteine rich domain containing 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:13336002) Ensembl
MGI
PMID:13336002 GO_REF:0000107 NCBI chr13:39,766,910...39,882,076
Ensembl chr13:39,766,919...39,882,086
JBrowse link
G HES1 hes family bHLH transcription factor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:18302773) Ensembl
MGI
PMID:18302773 GO_REF:0000107
G HEY2 hes related family bHLH transcription factor with YRPW motif 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:18302773) Ensembl
MGI
PMID:18302773 GO_REF:0000107 NCBI chr 1:64,630,656...64,646,546 JBrowse link
G HOXA1 homeobox A1 involved_in ISO (PMID:16155570) DFLAT PMID:16155570 NCBI chr14:40,267,033...40,272,212
Ensembl chr14:40,267,528...40,269,681
JBrowse link
G IFT20 intraflagellar transport 20 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:25605782) Ensembl
MGI
PMID:25605782 GO_REF:0000107 NCBI chr 9:42,581,117...42,587,830
Ensembl chr 9:42,581,433...42,587,804
JBrowse link
G IFT27 intraflagellar transport 27 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:25605782) Ensembl
MGI
PMID:25605782 GO_REF:0000107 NCBI chr10:27,688,742...27,707,343
Ensembl chr10:27,655,905...27,707,332
JBrowse link
G IFT88 intraflagellar transport 88 acts_upstream_of_or_within ISO (PMID:18066062) MGI PMID:18066062 NCBI chr25:17,414,965...17,551,405
Ensembl chr25:17,414,965...17,551,266
JBrowse link
G KCNK2 potassium two pore domain channel subfamily K member 2 ISO RGD PMID:15094499 RGD:2316534 NCBI chr 7:12,893,654...13,092,319
Ensembl chr 7:12,894,149...13,090,110
JBrowse link
G KCNK3 potassium two pore domain channel subfamily K member 3 ISO RGD PMID:15094499 RGD:2316534 NCBI chr17:20,732,779...20,771,104
Ensembl chr17:20,732,819...20,768,730
JBrowse link
G KCNQ1 potassium voltage-gated channel subfamily Q member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:46,554,390...46,830,533
Ensembl chr18:46,518,908...46,830,043
JBrowse link
G MCM2 minichromosome maintenance complex component 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:1,682,928...1,702,689
Ensembl chr20:1,682,886...1,702,366
JBrowse link
G MUSK muscle associated receptor tyrosine kinase ISO RGD PMID:18420419 RGD:2317082 NCBI chr11:65,552,320...65,642,165
Ensembl chr11:65,551,889...65,642,349
JBrowse link
G MYO7A myosin VIIA involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:13336002), (PMID:14198707), (PMID:6627025) Ensembl
MGI
PMID:6627025 PMID:13336002 PMID:14198707 GO_REF:0000107 MGI:63006 NCBI chr21:21,539,735...21,624,063
Ensembl chr21:21,539,785...21,624,279
JBrowse link
G NEUROG1 neurogenin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:23,563,128...23,564,819
Ensembl chr11:23,563,803...23,564,543
JBrowse link
G NTRK3 neurotrophic receptor tyrosine kinase 3 ISO RGD PMID:10494076 RGD:2325650 NCBI chr 3:51,131,470...51,491,112
Ensembl chr 3:51,138,751...51,513,024
JBrowse link
G OPA1 OPA1 mitochondrial dynamin like GTPase ISO RGD PMID:17828551 RGD:13208944 NCBI chr23:52,068,123...52,154,410
Ensembl chr23:52,068,118...52,151,593
JBrowse link
G OTOF otoferlin ISO RGD PMID:17229086 RGD:2316502 NCBI chr17:20,518,480...20,619,713
Ensembl chr17:20,518,813...20,614,750
JBrowse link
G PAFAH1B1 platelet activating factor acetylhydrolase 1b regulatory subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:46,648,057...46,731,259
Ensembl chr 9:46,648,052...46,771,400
JBrowse link
G PAX2 paired box 2 involved_in ISO (PMID:8951055) DFLAT PMID:8951055 NCBI chr28:13,442,894...13,519,853
Ensembl chr28:13,442,893...13,532,094
JBrowse link
G PSAP prosaposin acts_upstream_of_or_within ISO (PMID:17167097) MGI PMID:17167097 NCBI chr 4:22,571,095...22,603,880
Ensembl chr 4:22,572,153...22,603,848
JBrowse link
G PVALB parvalbumin ISO RGD PMID:16120789 RGD:7175527 NCBI chr10:27,655,896...27,674,309
Ensembl chr10:27,655,905...27,707,332
JBrowse link
G RPGRIP1L RPGRIP1 like involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:22927466) Ensembl
MGI
PMID:22927466 GO_REF:0000107 NCBI chr 2:62,080,159...62,179,694
Ensembl chr 2:62,080,080...62,178,284
JBrowse link
G SLC17A8 solute carrier family 17 member 8 ISO RGD PMID:24064385 RGD:9999152 NCBI chr15:39,443,790...39,489,988
Ensembl chr15:39,443,518...39,486,595
JBrowse link
G SLC26A5 solute carrier family 26 member 5 ISO RGD PMID:20006695 RGD:9479067 NCBI chr18:16,783,795...16,841,946
Ensembl chr18:16,788,759...16,839,940
JBrowse link
G SLITRK6 SLIT and NTRK like family member 6 acts_upstream_of_or_within ISO (PMID:19936227) MGI PMID:19936227 NCBI chr22:37,911,533...37,918,273
Ensembl chr22:37,912,612...37,925,177
JBrowse link
G SOBP sine oculis binding protein homolog involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:64,653,814...64,794,144
Ensembl chr12:64,664,288...64,794,358
JBrowse link
G TIFAB TIFA inhibitor involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:23,492,317...23,495,825
Ensembl chr11:23,492,867...23,493,352
JBrowse link
G VANGL2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO (PMID:18066062) MGI PMID:18066062 NCBI chr38:21,822,873...21,824,537 JBrowse link
cochlea morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTHRC1 collagen triple helix repeat containing 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:18606138) Ensembl
MGI
PMID:18606138 GO_REF:0000107 NCBI chr13:4,801,049...4,811,565
Ensembl chr13:4,805,577...4,811,282
JBrowse link
G DVL1 dishevelled segment polarity protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16116426) Ensembl
MGI
PMID:16116426 GO_REF:0000107 NCBI chr 5:56,507,803...56,519,382
Ensembl chr 5:56,507,739...56,519,491
JBrowse link
G DVL2 dishevelled segment polarity protein 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:19008950)
(PMID:16116426)
Ensembl
MGI
PMID:16116426 PMID:19008950 GO_REF:0000107 NCBI chr 5:32,194,326...32,201,922
Ensembl chr 5:32,194,313...32,201,857
JBrowse link
G DVL3 dishevelled segment polarity protein 3 acts_upstream_of_or_within ISO (PMID:19008950) MGI PMID:19008950 NCBI chr34:17,053,534...17,069,965
Ensembl chr34:17,053,343...17,068,389
JBrowse link
G EYA1 EYA transcriptional coactivator and phosphatase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:10072433) Ensembl
MGI
PMID:10072433 GO_REF:0000107 NCBI chr29:20,176,306...20,595,131
Ensembl chr29:20,177,014...20,525,653
JBrowse link
G FRZB frizzled related protein involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:17433286) Ensembl
MGI
PMID:17433286 GO_REF:0000107 NCBI chr36:25,884,557...25,907,436
Ensembl chr36:25,884,557...25,907,369
JBrowse link
G FZD2 frizzled class receptor 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:20940229) Ensembl
MGI
PMID:20940229 GO_REF:0000107 NCBI chr 9:18,888,711...18,890,549
Ensembl chr 9:18,888,696...18,890,525
JBrowse link
G GLI2 GLI family zinc finger 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:17395647) Ensembl
MGI
PMID:17395647 GO_REF:0000107 NCBI chr19:29,128,401...29,383,324
Ensembl chr19:29,130,227...29,383,658
JBrowse link
G GRHL3 grainyhead like transcription factor 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:20643356) Ensembl
MGI
PMID:20643356 GO_REF:0000107 NCBI chr 2:75,290,594...75,324,593
Ensembl chr 2:75,290,596...75,324,496
JBrowse link
G HOXA1 homeobox A1 involved_in ISO (PMID:16155570) DFLAT PMID:16155570 NCBI chr14:40,267,033...40,272,212
Ensembl chr14:40,267,528...40,269,681
JBrowse link
G HPN hepsin involved_in ISO (PMID:20683358) UniProt PMID:20683358 NCBI chr 1:117,486,308...117,503,127
Ensembl chr 1:117,486,340...117,502,583
JBrowse link
G MYO3A myosin IIIA involved_in ISO (PMID:26754646) UniProt PMID:26754646 NCBI chr 2:7,455,125...7,695,483
Ensembl chr 2:7,455,625...7,696,043
JBrowse link
G MYO3B myosin IIIB involved_in ISO (PMID:26754646) UniProt PMID:26754646 NCBI chr36:14,804,662...15,229,597
Ensembl chr36:14,803,514...15,209,820
JBrowse link
G NECTIN1 nectin cell adhesion molecule 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:14,228,197...14,292,825
Ensembl chr 5:14,228,197...14,315,060
JBrowse link
G NECTIN3 nectin cell adhesion molecule 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr33:15,868,813...16,173,158
Ensembl chr33:15,911,411...15,933,307
JBrowse link
G NECTIN3 nectin cell adhesion molecule 3 involved_in IEA Ensembl GO_REF:0000107
G NEUROG1 neurogenin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:23,563,128...23,564,819
Ensembl chr11:23,563,803...23,564,543
JBrowse link
G PAX2 paired box 2 acts_upstream_of_or_within
involved_in
ISO (PMID:16916509)
(PMID:8951055)
(PMID:20727173)
MGI
DFLAT
UniProt
PMID:8951055 PMID:16916509 PMID:20727173 NCBI chr28:13,442,894...13,519,853
Ensembl chr28:13,442,893...13,532,094
JBrowse link
G POU3F4 POU class 3 homeobox 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:64,427,161...64,428,825
Ensembl chr  X:64,427,325...64,428,410
JBrowse link
G PTK7 protein tyrosine kinase 7 (inactive) involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:20704721) Ensembl
MGI
PMID:20704721 GO_REF:0000107 NCBI chr12:11,593,017...11,657,149
Ensembl chr12:11,593,043...11,656,320
JBrowse link
G RAC1 Rac family small GTPase 1 acts_upstream_of_or_within ISO (PMID:20016102) MGI PMID:20016102 NCBI chr 6:11,726,259...11,758,532
Ensembl chr 6:11,655,494...11,757,216
JBrowse link
G SIX1 SIX homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:12874121) Ensembl
MGI
PMID:12874121 GO_REF:0000107 NCBI chr 8:35,676,705...35,679,534
Ensembl chr 8:35,676,479...35,679,534
JBrowse link
G SOX9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within
ISS
ISO
IEA
(PMID:20346939) UniProt
MGI
Ensembl
PMID:20346939 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:8,275,049...8,278,172
Ensembl chr 9:8,275,049...8,278,172
JBrowse link
G TBX1 T-box transcription factor 1 acts_upstream_of_or_within
involved_in
ISO (PMID:17825816)
(PMID:18231833)
MGI
UniProt
PMID:17825816 PMID:18231833 NCBI chr26:29,529,071...29,533,240
Ensembl chr26:29,528,878...29,532,784
JBrowse link
G TBX18 T-box transcription factor 18 acts_upstream_of_or_within ISO (PMID:18353863) MGI PMID:18353863 NCBI chr12:44,901,076...44,929,730
Ensembl chr12:44,873,119...44,929,205
JBrowse link
G TBX2 T-box transcription factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:35,237,323...35,245,066
Ensembl chr 9:35,235,649...35,245,736
JBrowse link
G TIFAB TIFA inhibitor involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:23,492,317...23,495,825
Ensembl chr11:23,492,867...23,493,352
JBrowse link
G TSHR thyroid stimulating hormone receptor involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:10575115) Ensembl
MGI
PMID:10575115 GO_REF:0000107 NCBI chr 8:53,327,280...53,482,898
Ensembl chr 8:53,326,655...53,482,898
JBrowse link
G VANGL2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO (PMID:20940229)
(PMID:17433286)
(PMID:16116426), (PMID:18606138)
(PMID:20643356)
(PMID:19008950)
MGI PMID:16116426 PMID:17433286 PMID:18606138 PMID:19008950 PMID:20643356 More... NCBI chr38:21,822,873...21,824,537 JBrowse link
G WNT5A Wnt family member 5A involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:17433286) Ensembl
MGI
PMID:17433286 GO_REF:0000107 NCBI chr20:34,756,430...34,790,937
Ensembl chr20:34,769,930...34,786,673
JBrowse link
G ZEB1 zinc finger E-box binding homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21980308) Ensembl
MGI
PMID:21980308 GO_REF:0000107 NCBI chr 2:15,300,401...15,481,535
Ensembl chr 2:15,299,723...15,481,495
JBrowse link
inner ear auditory receptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATOH1 atonal bHLH transcription factor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:11973280)
(PMID:15543141)
(PMID:19154718)
Ensembl
MGI
PMID:11973280 PMID:15543141 PMID:19154718 GO_REF:0000107 NCBI chr32:16,807,217...16,809,294
Ensembl chr32:16,807,336...16,808,406
JBrowse link
G BMP4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:17555714) Ensembl
MGI
PMID:17555714 GO_REF:0000107 NCBI chr 8:29,997,563...30,254,307
Ensembl chr 8:29,997,569...30,004,557
JBrowse link
G CDH23 cadherin related 23 acts_upstream_of_or_within ISO (PMID:12121736) MGI PMID:12121736 NCBI chr 4:22,206,972...22,570,875
Ensembl chr 4:22,207,001...22,571,131
JBrowse link
G CLRN2 clarin 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:31448880) Ensembl
MGI
PMID:31448880 GO_REF:0000107 NCBI chr 3:62,958,242...62,967,878
Ensembl chr 3:62,959,224...62,967,994
JBrowse link
G CUX1 cut like homeobox 1 acts_upstream_of_or_within ISO (PMID:11544187) MGI PMID:11544187 NCBI chr 6:7,820,154...8,108,236
Ensembl chr 6:7,820,764...8,195,631
JBrowse link
G DLL1 delta like canonical Notch ligand 1 acts_upstream_of ISO (PMID:16495313) MGI PMID:16495313 NCBI chr12:72,265,078...72,272,347
Ensembl chr12:72,265,682...72,272,348
JBrowse link
G FGF2 fibroblast growth factor 2 acts_upstream_of ISO (PMID:12417662) MGI PMID:12417662 NCBI chr19:17,403,288...17,463,143
Ensembl chr19:16,994,661...17,463,151
JBrowse link
G FGF20 fibroblast growth factor 20 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:18524904) Ensembl
MGI
PMID:18524904 GO_REF:0000107 NCBI chr16:40,330,793...40,339,925
Ensembl chr16:40,331,307...40,339,616
JBrowse link
G FGFR3 fibroblast growth factor receptor 3 acts_upstream_of_or_within ISO (PMID:17555714)
(PMID:17117437)
(PMID:17117437), (PMID:17557302)
MGI PMID:17117437 PMID:17555714 PMID:17557302 NCBI chr 3:62,309,128...62,318,932
Ensembl chr 3:62,303,756...62,323,896
JBrowse link
G GFI1 growth factor independent 1 transcriptional repressor acts_upstream_of_or_within ISO (PMID:12441305) MGI PMID:12441305 NCBI chr 6:56,473,032...56,484,422
Ensembl chr 6:56,256,305...56,484,422
JBrowse link
G GRXCR1 glutaredoxin and cysteine rich domain containing 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:12405956) Ensembl
MGI
PMID:12405956 GO_REF:0000107 NCBI chr13:39,766,910...39,882,076
Ensembl chr13:39,766,919...39,882,086
JBrowse link
G GSDME gasdermin E involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16023581) Ensembl
MGI
PMID:16023581 GO_REF:0000107 NCBI chr14:38,210,975...38,286,729
Ensembl chr14:38,211,540...38,292,280
JBrowse link
G HES1 hes family bHLH transcription factor 1 involved_in
acts_upstream_of
IEA
ISO
(PMID:21300049) Ensembl
MGI
PMID:21300049 GO_REF:0000107
G HES5 hes family bHLH transcription factor 5 involved_in
acts_upstream_of
IEA
ISO
(PMID:21300049) Ensembl
MGI
PMID:21300049 GO_REF:0000107 NCBI chr 5:57,387,961...57,389,412
Ensembl chr 5:57,388,674...57,389,388
JBrowse link
G JAG1 jagged canonical Notch ligand 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:16495313) RGD
MGI
Ensembl
PMID:10887092 PMID:16495313 GO_REF:0000107 RGD:1582345 NCBI chr24:11,656,926...11,693,146
Ensembl chr24:11,657,416...11,692,199
JBrowse link
G KCNMA1 potassium calcium-activated channel subfamily M alpha 1 involved_in
acts_upstream_of_or_within
ISA
ISO
(PMID:8973172)
(PMID:15328414), (PMID:17074442)
AgBase
MGI
PMID:8973172 PMID:15328414 PMID:17074442 NCBI chr 4:26,844,250...27,338,271
Ensembl chr 4:26,844,250...27,555,776
JBrowse link
G MCOLN2 mucolipin TRP cation channel 2 acts_upstream_of_or_within ISO (PMID:12403827) MGI PMID:12403827 NCBI chr 6:62,956,797...63,008,527
Ensembl chr 6:62,956,804...63,200,612
JBrowse link
G MCOLN3 mucolipin TRP cation channel 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:62,923,598...62,953,696
Ensembl chr 6:62,923,267...62,953,564
JBrowse link
G MINAR2 membrane integral NOTCH2 associated receptor 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:35727972) MGI
Ensembl
PMID:35727972 GO_REF:0000107 NCBI chr11:18,506,042...18,531,187
Ensembl chr11:18,507,059...18,524,589
JBrowse link
G MYO6 myosin VI acts_upstream_of_or_within
involved_in
ISO
IBA
(PMID:10525338), (PMID:5980120), (PMID:7493015) MGI
GO_Central
PMID:5980120 PMID:7493015 PMID:10525338 GO_REF:0000033 NCBI chr12:37,359,200...37,502,342
Ensembl chr12:37,413,570...37,500,724
JBrowse link
G MYO7A myosin VIIA involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:12121736)
(PMID:15389316)
(PMID:11753415)
Ensembl
MGI
PMID:11753415 PMID:12121736 PMID:15389316 GO_REF:0000107 NCBI chr21:21,539,735...21,624,063
Ensembl chr21:21,539,785...21,624,279
JBrowse link
G PCDH15 protocadherin related 15 acts_upstream_of_or_within ISO (PMID:16481439) MGI PMID:16481439 NCBI chr26:33,426,728...34,589,208
Ensembl chr26:33,719,839...34,588,017
JBrowse link
G PLS3 plastin 3 ISO RGD PMID:12378542 RGD:731234 NCBI chr  X:88,308,817...88,399,682
Ensembl chr  X:88,308,888...88,398,810
JBrowse link
G POU4F3 POU class 4 homeobox 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:12585968)
(PMID:8637595)
Ensembl
MGI
PMID:8637595 PMID:12585968 GO_REF:0000107 NCBI chr 2:40,762,499...40,764,131
Ensembl chr 2:40,762,477...40,765,161
JBrowse link
G USH1C USH1 protein network component harmonin acts_upstream_of_or_within ISO (PMID:14519688) MGI PMID:14519688 NCBI chr21:40,055,786...40,100,685
Ensembl chr21:40,055,730...40,101,430
JBrowse link
G USH2A usherin involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:17360538) Ensembl
MGI
PMID:17360538 GO_REF:0000107 NCBI chr38:11,063,221...11,750,444
Ensembl chr38:11,063,817...11,750,444
JBrowse link
inner ear morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABR ABR activator of RhoGEF and GTPase acts_upstream_of_or_within ISO (PMID:11921339) MGI PMID:11921339 NCBI chr 9:44,634,117...44,821,454
Ensembl chr 9:44,681,411...44,819,249
JBrowse link
G ALDH1A3 aldehyde dehydrogenase 1 family member A3 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:23536097) Ensembl
MGI
PMID:23536097 GO_REF:0000107 NCBI chr 3:40,130,904...40,168,686
Ensembl chr 3:40,132,726...40,168,664
JBrowse link
G ATOH1 atonal bHLH transcription factor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16145671)
(PMID:15543141)
Ensembl
MGI
PMID:15543141 PMID:16145671 GO_REF:0000107 NCBI chr32:16,807,217...16,809,294
Ensembl chr32:16,807,336...16,808,406
JBrowse link
G ATP2B2 ATPase plasma membrane Ca2+ transporting 2 acts_upstream_of_or_within ISO (PMID:9668038) MGI PMID:9668038 NCBI chr20:7,665,468...8,037,407
Ensembl chr20:7,749,807...8,034,474
JBrowse link
G ATP6V1B1 ATPase H+ transporting V1 subunit B1 involved_in
NOT|involved_in
IEA
ISO
(PMID:12782355) Ensembl
UniProt
PMID:12782355 GO_REF:0000107 NCBI chr10:69,261,311...69,287,540
Ensembl chr10:69,252,926...69,287,542
JBrowse link
G BCR BCR activator of RhoGEF and GTPase involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:11921339) Ensembl
MGI
PMID:11921339 GO_REF:0000107 NCBI chr26:27,856,280...27,980,923
Ensembl chr26:27,856,082...27,978,318
JBrowse link
G CDH23 cadherin related 23 acts_upstream_of_or_within ISO (PMID:15925194)
(PMID:7610888)
MGI PMID:7610888 PMID:15925194 MGI:61210 NCBI chr 4:22,206,972...22,570,875
Ensembl chr 4:22,207,001...22,571,131
JBrowse link
G CELSR1 cadherin EGF LAG seven-pass G-type receptor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:12842012) Ensembl
MGI
PMID:12842012 GO_REF:0000107 NCBI chr10:19,704,104...19,836,886
Ensembl chr10:19,707,804...19,837,481
JBrowse link
G CHD7 chromodomain helicase DNA binding protein 7 involved_in
acts_upstream_of_or_within
IEA
IBA
ISO
(PMID:15353999) Ensembl
GO_Central
MGI
PMID:15353999 GO_REF:0000033 GO_REF:0000107 NCBI chr29:11,115,865...11,284,713
Ensembl chr29:11,156,340...11,283,627
JBrowse link
G CHRNA10 cholinergic receptor nicotinic alpha 10 subunit involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:18077337) Ensembl
MGI
PMID:18077337 GO_REF:0000107 NCBI chr21:26,216,862...26,233,226 JBrowse link
G CHRNA9 cholinergic receptor nicotinic alpha 9 subunit involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:18077337) Ensembl
MGI
PMID:18077337 GO_REF:0000107 NCBI chr 3:72,190,431...72,204,092
Ensembl chr 3:72,190,555...72,203,404
JBrowse link
G COL11A1 collagen type XI alpha 1 chain involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:1952599) Ensembl
MGI
PMID:1952599 GO_REF:0000107 NCBI chr 6:47,425,387...47,622,189
Ensembl chr 6:47,425,307...47,621,012
JBrowse link
G COL2A1 collagen type II alpha 1 chain involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:9165353) Ensembl
MGI
PMID:9165353 GO_REF:0000107 NCBI chr27:6,756,994...6,787,733
Ensembl chr27:6,756,994...6,787,733
JBrowse link
G DLX5 distal-less homeobox 5 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16900517)
(PMID:12142028)
Ensembl
MGI
PMID:12142028 PMID:16900517 GO_REF:0000107 NCBI chr14:22,080,351...22,085,188
Ensembl chr14:22,080,699...22,084,867
JBrowse link
G DLX6 distal-less homeobox 6 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16900517) Ensembl
MGI
PMID:16900517 GO_REF:0000107 NCBI chr14:22,067,253...22,086,284
Ensembl chr14:22,067,149...22,220,799
JBrowse link
G EPHB2 EPH receptor B2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:76,427,112...76,551,494
Ensembl chr 2:76,428,203...76,612,786
JBrowse link
G EYA1 EYA transcriptional coactivator and phosphatase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16916509)
(PMID:10471511)
(PMID:15817220)
Ensembl
MGI
PMID:10471511 PMID:15817220 PMID:16916509 GO_REF:0000107 NCBI chr29:20,176,306...20,595,131
Ensembl chr29:20,177,014...20,525,653
JBrowse link
G FGF10 fibroblast growth factor 10 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16691564)
(PMID:11062007)
Ensembl
MGI
PMID:11062007 PMID:16691564 GO_REF:0000107 NCBI chr 4:65,851,130...65,930,944
Ensembl chr 4:65,851,069...65,928,192
JBrowse link
G FGF8 fibroblast growth factor 8 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:15809037) Ensembl
MGI
PMID:15809037 GO_REF:0000107 NCBI chr28:14,362,407...14,367,109
Ensembl chr28:14,362,109...14,367,468
JBrowse link
G FGF9 fibroblast growth factor 9 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:15328018) Ensembl
MGI
PMID:15328018 GO_REF:0000107 NCBI chr25:16,630,321...16,665,935
Ensembl chr25:16,632,812...16,663,550
JBrowse link
G FGFR1 fibroblast growth factor receptor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:12194867) Ensembl
MGI
PMID:12194867 GO_REF:0000107 NCBI chr16:27,029,902...27,080,514
Ensembl chr16:27,031,588...27,078,261
JBrowse link
G FGFR2 fibroblast growth factor receptor 2 involved_in
acts_upstream_of_or_within
ISS
ISO
(PMID:10934262) UniProt
MGI
PMID:10934262 GO_REF:0000024 NCBI chr28:31,303,882...31,411,015
Ensembl chr28:31,303,894...31,411,621
JBrowse link
G FOXG1 forkhead box G1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16691564) Ensembl
MGI
PMID:16691564 GO_REF:0000107 NCBI chr 8:8,276,300...8,279,785 JBrowse link
G FOXI1 forkhead box I1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:12642503) Ensembl
MGI
PMID:12642503 GO_REF:0000107 NCBI chr 4:41,760,899...41,764,887
Ensembl chr 4:41,761,016...41,764,836
JBrowse link
G FRZB frizzled related protein involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:18991062) Ensembl
MGI
PMID:18991062 GO_REF:0000107 NCBI chr36:25,884,557...25,907,436
Ensembl chr36:25,884,557...25,907,369
JBrowse link
G FZD3 frizzled class receptor 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16495441) Ensembl
MGI
PMID:16495441 GO_REF:0000107 NCBI chr25:28,969,126...29,075,763
Ensembl chr25:28,952,477...29,075,851
JBrowse link
G FZD6 frizzled class receptor 6 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16495441) Ensembl
MGI
PMID:16495441 GO_REF:0000107 NCBI chr13:4,732,541...4,771,294
Ensembl chr13:4,733,017...4,772,115
JBrowse link
G GATA2 GATA binding protein 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:20652952) Ensembl
MGI
PMID:20652952 GO_REF:0000107 NCBI chr20:2,472,251...2,488,380
Ensembl chr20:2,473,912...2,480,991
JBrowse link
G GATA3 GATA binding protein 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21553382)
(PMID:11135239)
Ensembl
MGI
PMID:11135239 PMID:21553382 GO_REF:0000107 NCBI chr 2:28,068,143...28,098,445
Ensembl chr 2:28,069,051...28,087,760
JBrowse link
G GBX2 gastrulation brain homeobox 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:15829521), (PMID:15996652) Ensembl
MGI
PMID:15829521 PMID:15996652 GO_REF:0000107 NCBI chr25:47,005,509...47,008,367
Ensembl chr25:47,005,504...47,008,512
JBrowse link
G GFI1 growth factor independent 1 transcriptional repressor acts_upstream_of_or_within ISO (PMID:12441305) MGI PMID:12441305 NCBI chr 6:56,473,032...56,484,422
Ensembl chr 6:56,256,305...56,484,422
JBrowse link
G HMX2 H6 family homeobox 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:15363417)
(PMID:11748138)
Ensembl
MGI
PMID:11748138 PMID:15363417 GO_REF:0000107 NCBI chr28:32,679,585...32,687,972
Ensembl chr28:32,679,579...32,687,982
JBrowse link
G HMX3 H6 family homeobox 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:9435283)
(PMID:15363417)
Ensembl
MGI
PMID:9435283 PMID:15363417 GO_REF:0000107 NCBI chr28:32,673,652...32,676,700
Ensembl chr28:32,674,213...32,675,232
JBrowse link
G HOXA1 homeobox A1 acts_upstream_of_or_within ISO (PMID:15367676) MGI PMID:15367676 NCBI chr14:40,267,033...40,272,212
Ensembl chr14:40,267,528...40,269,681
JBrowse link
G INSIG1 insulin induced gene 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16955138) Ensembl
MGI
PMID:16955138 GO_REF:0000107 NCBI chr16:18,260,456...18,271,855
Ensembl chr16:18,259,935...18,271,378
JBrowse link
G INSIG2 insulin induced gene 2 acts_upstream_of_or_within ISO (PMID:16955138) MGI PMID:16955138 NCBI chr19:31,796,984...31,811,556
Ensembl chr19:31,791,710...31,811,386
JBrowse link
G ITGA8 integrin subunit alpha 8 acts_upstream_of_or_within ISO (PMID:10742111) MGI PMID:10742111 NCBI chr 2:21,034,630...21,244,304
Ensembl chr 2:21,075,653...21,241,951
JBrowse link
G KCNQ1 potassium voltage-gated channel subfamily Q member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr18:46,554,390...46,830,533
Ensembl chr18:46,518,908...46,830,043
JBrowse link
G KCNQ4 potassium voltage-gated channel subfamily Q member 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16437162) Ensembl
MGI
PMID:16437162 GO_REF:0000107 NCBI chr15:2,203,938...2,257,152
Ensembl chr15:2,205,276...2,242,093
JBrowse link
G MAFB MAF bZIP transcription factor B involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16325169) Ensembl
MGI
PMID:16325169 GO_REF:0000107 NCBI chr24:28,769,904...28,772,519
Ensembl chr24:28,770,944...28,774,948
JBrowse link
G MYO15A myosin XVA acts_upstream_of_or_within ISO (PMID:11718241), (PMID:14724386) MGI PMID:11718241 PMID:14724386 NCBI chr 5:41,369,484...41,421,303
Ensembl chr 5:41,370,509...41,392,881
JBrowse link
G MYO6 myosin VI acts_upstream_of_or_within
involved_in
ISO
IBA
(PMID:7493015) MGI
GO_Central
PMID:7493015 GO_REF:0000033 NCBI chr12:37,359,200...37,502,342
Ensembl chr12:37,413,570...37,500,724
JBrowse link
G MYO7A myosin VIIA involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:5795329)
(PMID:15389316)
(PMID:11753415)
Ensembl
MGI
PMID:5795329 PMID:11753415 PMID:15389316 GO_REF:0000107 NCBI chr21:21,539,735...21,624,063
Ensembl chr21:21,539,785...21,624,279
JBrowse link
G NEUROG1 neurogenin 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16145671) Ensembl
MGI
PMID:16145671 GO_REF:0000107 NCBI chr11:23,563,128...23,564,819
Ensembl chr11:23,563,803...23,564,543
JBrowse link
G NR4A3 nuclear receptor subfamily 4 group A member 3 acts_upstream_of_or_within ISO (PMID:11784868) MGI PMID:11784868 NCBI chr11:56,806,506...56,846,997
Ensembl chr11:56,812,804...56,847,689
JBrowse link
G NTN1 netrin 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:17616930) Ensembl
MGI
PMID:17616930 GO_REF:0000107 NCBI chr 5:33,654,723...33,825,832
Ensembl chr 5:33,637,142...33,825,899
JBrowse link
G OTOP1 otopetrin 1 involved_in
acts_upstream_of_or_within
IEA
IBA
ISO
(PMID:12651873) Ensembl
GO_Central
MGI
PMID:12651873 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:69,639,550...69,665,051
Ensembl chr 3:69,640,492...69,649,201
JBrowse link
G OTX1 orthodenticle homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:10225993) Ensembl
MGI
PMID:10225993 GO_REF:0000107 NCBI chr10:62,830,515...62,836,449
Ensembl chr10:62,830,187...62,837,172
JBrowse link
G OTX2 orthodenticle homeobox 2 acts_upstream_of_or_within ISO (PMID:10225993) MGI PMID:10225993 NCBI chr 8:32,435,169...32,445,093
Ensembl chr 8:32,435,863...32,445,446
JBrowse link
G PAX2 paired box 2 acts_upstream_of_or_within
involved_in
ISO (PMID:16916509)
(PMID:20727173)
(PMID:8951055)
(PMID:15242798)
MGI
UniProt
DFLAT
PMID:8951055 PMID:15242798 PMID:16916509 PMID:20727173 NCBI chr28:13,442,894...13,519,853
Ensembl chr28:13,442,893...13,532,094
JBrowse link
G PAX8 paired box 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:37,307,130...37,331,729
Ensembl chr17:37,306,033...37,363,178
JBrowse link
G POU4F3 POU class 4 homeobox 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:12585968) Ensembl
MGI
PMID:12585968 GO_REF:0000107 NCBI chr 2:40,762,499...40,764,131
Ensembl chr 2:40,762,477...40,765,161
JBrowse link
G PRRX1 paired related homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:9729491) Ensembl
MGI
PMID:9729491 GO_REF:0000107 NCBI chr 7:28,065,570...28,138,734
Ensembl chr 7:28,068,711...28,138,787
JBrowse link
G PRRX2 paired related homeobox 2 acts_upstream_of_or_within ISO (PMID:9729491) MGI PMID:9729491 NCBI chr 9:54,089,046...54,112,595
Ensembl chr 9:54,093,163...54,096,348
JBrowse link
G PTPRQ protein tyrosine phosphatase receptor type Q involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:14534255) Ensembl
MGI
PMID:14534255 GO_REF:0000107 NCBI chr15:22,771,653...23,017,694
Ensembl chr15:22,825,348...23,013,762
JBrowse link
G ROR2 receptor tyrosine kinase like orphan receptor 2 acts_upstream_of_or_within ISO (PMID:18606138) MGI PMID:18606138 NCBI chr 1:95,209,122...95,280,956
Ensembl chr 1:95,088,745...95,280,151
JBrowse link
G SDHAF3 succinate dehydrogenase complex assembly factor 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:22,153,377...22,221,918 JBrowse link
G SIX1 SIX homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:15788460) Ensembl
MGI
PMID:15788460 GO_REF:0000107 NCBI chr 8:35,676,705...35,679,534
Ensembl chr 8:35,676,479...35,679,534
JBrowse link
G SIX4 SIX homeobox 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:15788460) Ensembl
MGI
PMID:15788460 GO_REF:0000107 NCBI chr 8:35,735,893...35,748,976
Ensembl chr 8:35,737,058...35,748,893
JBrowse link
G SLITRK6 SLIT and NTRK like family member 6 acts_upstream_of_or_within ISO (PMID:19936227) MGI PMID:19936227 NCBI chr22:37,911,533...37,918,273
Ensembl chr22:37,912,612...37,925,177
JBrowse link
G SOBP sine oculis binding protein homolog involved_in
acts_upstream_of_or_within
IEA
IBA
ISO
(PMID:16962269) Ensembl
GO_Central
MGI
PMID:16962269 GO_REF:0000033 GO_REF:0000107 NCBI chr12:64,653,814...64,794,144
Ensembl chr12:64,664,288...64,794,358
JBrowse link
G SOX2 SRY-box transcription factor 2 acts_upstream_of_or_within ISO (PMID:15846349) MGI PMID:15846349 NCBI chr34:14,853,000...14,855,153 JBrowse link
G SPRY2 sprouty RTK signaling antagonist 2 acts_upstream_of_or_within ISO (PMID:15809037) MGI PMID:15809037 NCBI chr22:33,366,139...33,371,102
Ensembl chr22:33,366,931...33,367,878
JBrowse link
G TBX1 T-box transcription factor 1 acts_upstream_of_or_within ISO (PMID:16600992)
(PMID:12913075)
(PMID:15084464)
(PMID:15652707)
MGI PMID:12913075 PMID:15084464 PMID:15652707 PMID:16600992 NCBI chr26:29,529,071...29,533,240
Ensembl chr26:29,528,878...29,532,784
JBrowse link
G TBX3 T-box transcription factor 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:11,694,885...11,709,594
Ensembl chr26:11,696,565...11,708,918
JBrowse link
G TFAP2A transcription factor AP-2 alpha involved_in ISO (PMID:21204207) UniProt PMID:21204207 NCBI chr35:10,157,043...10,180,484
Ensembl chr35:10,157,882...10,180,270
JBrowse link
G TIFAB TIFA inhibitor involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:23,492,317...23,495,825
Ensembl chr11:23,492,867...23,493,352
JBrowse link
G TMIE transmembrane inner ear involved_in
acts_upstream_of_or_within
IEA
IBA
ISO
(PMID:12140191) Ensembl
GO_Central
MGI
PMID:12140191 GO_REF:0000033 GO_REF:0000107 NCBI chr20:42,052,607...42,061,424
Ensembl chr20:42,053,817...42,061,262
JBrowse link
G USH1C USH1 protein network component harmonin acts_upstream_of_or_within ISO (PMID:14519688) MGI PMID:14519688 NCBI chr21:40,055,786...40,100,685
Ensembl chr21:40,055,730...40,101,430
JBrowse link
G USH1G USH1 protein network component sans involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:12588793), (PMID:1927362) Ensembl
MGI
PMID:1927362 PMID:12588793 GO_REF:0000107 NCBI chr 9:5,527,935...5,532,940
Ensembl chr 9:5,528,492...5,533,900
JBrowse link
G WNT1 Wnt family member 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:15961523) Ensembl
MGI
PMID:15961523 GO_REF:0000107 NCBI chr27:5,588,151...5,592,254
Ensembl chr27:5,574,940...5,592,060
JBrowse link
G WNT3A Wnt family member 3A involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:15961523) Ensembl
MGI
PMID:15961523 GO_REF:0000107 NCBI chr14:864,393...899,698
Ensembl chr14:863,424...896,412
JBrowse link
G WNT5A Wnt family member 5A involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:18991062) Ensembl
MGI
PMID:18991062 GO_REF:0000107 NCBI chr20:34,756,430...34,790,937
Ensembl chr20:34,769,930...34,786,673
JBrowse link
inner ear receptor cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP8B1 ATPase phospholipid transporting 8B1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:18,156,664...18,279,131
Ensembl chr 1:18,156,410...18,277,904
JBrowse link
G DICER1 dicer 1, ribonuclease III acts_upstream_of_or_within ISO (PMID:19416898) MGI PMID:19416898 NCBI chr 8:63,970,245...64,029,438
Ensembl chr 8:63,972,027...64,019,879
JBrowse link
G FZD2 frizzled class receptor 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:20940229) Ensembl
MGI
PMID:20940229 GO_REF:0000107 NCBI chr 9:18,888,711...18,890,549
Ensembl chr 9:18,888,696...18,890,525
JBrowse link
G GABRA5 gamma-aminobutyric acid type A receptor subunit alpha5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:33,663,414...33,746,120
Ensembl chr 3:33,664,169...33,744,328
JBrowse link
G GABRB2 gamma-aminobutyric acid type A receptor subunit beta2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:49,342,527...49,579,697
Ensembl chr 4:49,342,508...49,578,092
JBrowse link
G GABRB3 gamma-aminobutyric acid type A receptor subunit beta3 involved_in ISO (PMID:17021187) DFLAT PMID:17021187 NCBI chr 3:33,878,948...34,101,987
Ensembl chr 3:33,878,904...34,097,764
JBrowse link
G GRXCR1 glutaredoxin and cysteine rich domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:39,766,910...39,882,076
Ensembl chr13:39,766,919...39,882,086
JBrowse link
G NAGLU N-acetyl-alpha-glucosaminidase involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:17712420) Ensembl
MGI
PMID:17712420 GO_REF:0000107 NCBI chr 9:20,407,296...20,414,094
Ensembl chr 9:20,407,281...20,414,056
JBrowse link
G TSHR thyroid stimulating hormone receptor involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:10575115) Ensembl
MGI
PMID:10575115 GO_REF:0000107 NCBI chr 8:53,327,280...53,482,898
Ensembl chr 8:53,326,655...53,482,898
JBrowse link
G VANGL2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO (PMID:20940229) MGI PMID:20940229 NCBI chr38:21,822,873...21,824,537 JBrowse link
inner ear receptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP2B2 ATPase plasma membrane Ca2+ transporting 2 acts_upstream_of_or_within ISO (PMID:11875276) MGI PMID:11875276 NCBI chr20:7,665,468...8,037,407
Ensembl chr20:7,749,807...8,034,474
JBrowse link
G DIAPH3 diaphanous related formin 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:23441200) Ensembl
MGI
PMID:23441200 GO_REF:0000107 NCBI chr22:15,573,485...16,078,580
Ensembl chr22:15,573,629...16,079,031
JBrowse link
G MINAR2 membrane integral NOTCH2 associated receptor 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:35727972) MGI
Ensembl
PMID:35727972 GO_REF:0000107 NCBI chr11:18,506,042...18,531,187
Ensembl chr11:18,507,059...18,524,589
JBrowse link
G MYO7A myosin VIIA involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:9680294)
(PMID:9435277)
Ensembl
MGI
PMID:9435277 PMID:9680294 GO_REF:0000107 NCBI chr21:21,539,735...21,624,063
Ensembl chr21:21,539,785...21,624,279
JBrowse link
G POU4F3 POU class 4 homeobox 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:9256502), (PMID:9735355) Ensembl
MGI
PMID:9256502 PMID:9735355 GO_REF:0000107 NCBI chr 2:40,762,499...40,764,131
Ensembl chr 2:40,762,477...40,765,161
JBrowse link
G USH1G USH1 protein network component sans involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:1442008)
(PMID:12588793), (PMID:1763621), (PMID:1927362)
Ensembl
MGI
PMID:1442008 PMID:1763621 PMID:1927362 PMID:12588793 GO_REF:0000107 NCBI chr 9:5,527,935...5,532,940
Ensembl chr 9:5,528,492...5,533,900
JBrowse link
inner ear receptor cell stereocilium organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADGRV1 adhesion G protein-coupled receptor V1 acts_upstream_of_or_within ISO (PMID:17567809) MGI PMID:17567809 NCBI chr 3:17,866,459...18,351,532
Ensembl chr 3:17,866,808...18,351,532
JBrowse link
G ALMS1 ALMS1 centrosome and basal body associated protein acts_upstream_of_or_within ISO (PMID:21071598) MGI PMID:21071598 NCBI chr17:49,301,397...49,513,729
Ensembl chr17:49,301,606...49,513,625
JBrowse link
G CDH23 cadherin related 23 acts_upstream_of_or_within ISO (PMID:18339676) MGI PMID:18339676 NCBI chr 4:22,206,972...22,570,875
Ensembl chr 4:22,207,001...22,571,131
JBrowse link
G CECR2 CECR2 histone acetyl-lysine reader involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21246654) Ensembl
MGI
PMID:21246654 GO_REF:0000107 NCBI chr27:45,125,909...45,193,577
Ensembl chr27:45,125,723...45,188,890
JBrowse link
G CLIC5 chloride intracellular channel 5 involved_in ISO (PMID:24285636) UniProt PMID:24285636 NCBI chr12:14,160,524...14,318,174
Ensembl chr12:14,144,390...14,318,582
JBrowse link
G CTHRC1 collagen triple helix repeat containing 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:18606138) Ensembl
MGI
PMID:18606138 GO_REF:0000107 NCBI chr13:4,801,049...4,811,565
Ensembl chr13:4,805,577...4,811,282
JBrowse link
G FAT4 FAT atypical cadherin 4 acts_upstream_of_or_within ISO (PMID:21303848) MGI PMID:21303848 NCBI chr19:15,157,595...15,332,821
Ensembl chr19:15,158,922...15,332,045
JBrowse link
G GRXCR1 glutaredoxin and cysteine rich domain containing 1 involved_in IEA
IBA
Ensembl
GO_Central
GO_REF:0000033 GO_REF:0000107 NCBI chr13:39,766,910...39,882,076
Ensembl chr13:39,766,919...39,882,086
JBrowse link
G GRXCR2 glutaredoxin and cysteine rich domain containing 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:30380417) Ensembl
MGI
PMID:30380417 GO_REF:0000107 NCBI chr 2:40,310,285...40,330,200
Ensembl chr 2:40,315,807...40,328,240
JBrowse link
G HES1 hes family bHLH transcription factor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21300049) Ensembl
MGI
PMID:21300049 GO_REF:0000107
G HES5 hes family bHLH transcription factor 5 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21300049) Ensembl
MGI
PMID:21300049 GO_REF:0000107 NCBI chr 5:57,387,961...57,389,412
Ensembl chr 5:57,388,674...57,389,388
JBrowse link
G HEY1 hes related family bHLH transcription factor with YRPW motif 1 acts_upstream_of_or_within ISO (PMID:21300049) MGI PMID:21300049 NCBI chr29:27,185,191...27,188,121
Ensembl chr29:27,185,191...27,188,121
JBrowse link
G IFT20 intraflagellar transport 20 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:25605782) Ensembl
MGI
PMID:25605782 GO_REF:0000107 NCBI chr 9:42,581,117...42,587,830
Ensembl chr 9:42,581,433...42,587,804
JBrowse link
G IFT27 intraflagellar transport 27 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:25605782) Ensembl
MGI
PMID:25605782 GO_REF:0000107 NCBI chr10:27,688,742...27,707,343
Ensembl chr10:27,655,905...27,707,332
JBrowse link
G IFT88 intraflagellar transport 88 acts_upstream_of_or_within ISO (PMID:18066062) MGI PMID:18066062 NCBI chr25:17,414,965...17,551,405
Ensembl chr25:17,414,965...17,551,266
JBrowse link
G KIF3A kinesin family member 3A acts_upstream_of_or_within ISO (PMID:18066062) MGI PMID:18066062 NCBI chr11:20,988,516...21,044,151
Ensembl chr11:20,928,655...21,044,090
JBrowse link
G MINAR2 membrane integral NOTCH2 associated receptor 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:35727972) MGI
Ensembl
PMID:35727972 GO_REF:0000107 NCBI chr11:18,506,042...18,531,187
Ensembl chr11:18,507,059...18,524,589
JBrowse link
G MKS1 MKS transition zone complex subunit 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21045211) Ensembl
MGI
PMID:21045211 GO_REF:0000107 NCBI chr 9:32,865,972...32,878,712
Ensembl chr 9:32,860,995...32,879,338
JBrowse link
G MYO7A myosin VIIA involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:18339676) Ensembl
MGI
PMID:18339676 GO_REF:0000107 NCBI chr21:21,539,735...21,624,063
Ensembl chr21:21,539,785...21,624,279
JBrowse link
G OTOG otogelin acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:31776257) MGI
Ensembl
PMID:31776257 GO_REF:0000107 NCBI chr21:40,103,163...40,193,680
Ensembl chr21:40,106,826...40,192,475
JBrowse link
G OTOGL otogelin like acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:31776257) MGI
Ensembl
PMID:31776257 GO_REF:0000107 NCBI chr15:22,623,183...22,754,605
Ensembl chr15:22,556,295...22,753,956
JBrowse link
G PCDH15 protocadherin related 15 acts_upstream_of_or_within ISO (PMID:18339676) MGI PMID:18339676 NCBI chr26:33,426,728...34,589,208
Ensembl chr26:33,719,839...34,588,017
JBrowse link
G SCRIB scribble planar cell polarity protein involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21515572) Ensembl
MGI
PMID:21515572 GO_REF:0000107 NCBI chr13:37,356,405...37,374,765
Ensembl chr13:37,356,405...37,374,681
JBrowse link
G SDC4 syndecan 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:23760952) Ensembl
MGI
PMID:23760952 GO_REF:0000107 NCBI chr24:32,628,704...32,648,809
Ensembl chr24:32,630,437...32,649,114
JBrowse link
G STRC stereocilin acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:31776257) MGI
Ensembl
PMID:31776257 GO_REF:0000107 NCBI chr30:10,444,726...10,459,058
Ensembl chr30:10,444,793...10,460,785
JBrowse link
G TRIP11 thyroid hormone receptor interactor 11 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:25605782) MGI
Ensembl
PMID:25605782 GO_REF:0000107 NCBI chr 8:1,244,104...1,314,251
Ensembl chr 8:1,247,155...1,354,720
JBrowse link
G TSHR thyroid stimulating hormone receptor involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:10575115) Ensembl
MGI
PMID:10575115 GO_REF:0000107 NCBI chr 8:53,327,280...53,482,898
Ensembl chr 8:53,326,655...53,482,898
JBrowse link
G TSKU tsukushi, small leucine rich proteoglycan involved_in ISO (PMID:32127020) UniProt PMID:32127020 NCBI chr21:21,910,333...21,927,758
Ensembl chr21:21,915,956...21,928,119
JBrowse link
G TTC8 tetratricopeptide repeat domain 8 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:25605782) Ensembl
MGI
PMID:25605782 GO_REF:0000107 NCBI chr 8:60,061,670...60,115,464
Ensembl chr 8:60,061,732...60,115,075
JBrowse link
G USH1C USH1 protein network component harmonin acts_upstream_of_or_within
involved_in
ISO
IBA
(PMID:18339676) MGI
GO_Central
PMID:18339676 GO_REF:0000033 NCBI chr21:40,055,786...40,100,685
Ensembl chr21:40,055,730...40,101,430
JBrowse link
G USH1G USH1 protein network component sans involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:18339676) Ensembl
MGI
PMID:18339676 GO_REF:0000107 NCBI chr 9:5,527,935...5,532,940
Ensembl chr 9:5,528,492...5,533,900
JBrowse link
G VANGL2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO (PMID:18606138)
(PMID:18066062)
(PMID:23760952)
MGI PMID:18066062 PMID:18606138 PMID:23760952 NCBI chr38:21,822,873...21,824,537 JBrowse link
G WHRN whirlin involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:68,617,383...68,699,824
Ensembl chr11:68,617,377...68,699,977
JBrowse link
lateral semicircular canal development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GLI3 GLI family zinc finger 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:17395647) Ensembl
MGI
PMID:17395647 GO_REF:0000107 NCBI chr18:7,800,817...8,071,531
Ensembl chr18:7,801,394...8,068,132
JBrowse link
negative regulation of inner ear auditory receptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DLL1 delta like canonical Notch ligand 1 acts_upstream_of_or_within ISO (PMID:16495313) MGI PMID:16495313 NCBI chr12:72,265,078...72,272,347
Ensembl chr12:72,265,682...72,272,348
JBrowse link
G FGFR3 fibroblast growth factor receptor 3 acts_upstream_of_or_within ISO (PMID:17117437) MGI PMID:17117437 NCBI chr 3:62,309,128...62,318,932
Ensembl chr 3:62,303,756...62,323,896
JBrowse link
G HES1 hes family bHLH transcription factor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21300049)
(PMID:11023859), (PMID:11425898)
Ensembl
MGI
PMID:11023859 PMID:11425898 PMID:21300049 GO_REF:0000107
G HES5 hes family bHLH transcription factor 5 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:11425898)
(PMID:21300049)
Ensembl
MGI
PMID:11425898 PMID:21300049 GO_REF:0000107 NCBI chr 5:57,387,961...57,389,412
Ensembl chr 5:57,388,674...57,389,388
JBrowse link
G NOTCH1 notch receptor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:25535395) Ensembl
MGI
PMID:25535395 GO_REF:0000107 NCBI chr 9:48,975,972...49,018,985
Ensembl chr 9:48,974,757...49,017,277
JBrowse link
negative regulation of inner ear receptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HES1 hes family bHLH transcription factor 1 involved_in IEA Ensembl GO_REF:0000107
G HES5 hes family bHLH transcription factor 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:57,387,961...57,389,412
Ensembl chr 5:57,388,674...57,389,388
JBrowse link
otic vesicle development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COL2A1 collagen type II alpha 1 chain involved_in IEA Ensembl GO_REF:0000107 NCBI chr27:6,756,994...6,787,733
Ensembl chr27:6,756,994...6,787,733
JBrowse link
G EYA1 EYA transcriptional coactivator and phosphatase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:22513373) Ensembl
MGI
PMID:22513373 GO_REF:0000107 NCBI chr29:20,176,306...20,595,131
Ensembl chr29:20,177,014...20,525,653
JBrowse link
G GATA3 GATA binding protein 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:11135239) Ensembl
MGI
PMID:11135239 GO_REF:0000107 NCBI chr 2:28,068,143...28,098,445
Ensembl chr 2:28,069,051...28,087,760
JBrowse link
G GET1 guided entry of tail-anchored proteins factor 1 acts_upstream_of_or_within ISO (PMID:27458190) MGI PMID:27458190 NCBI chr31:34,282,650...34,299,916 JBrowse link
G PAX8 paired box 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:37,307,130...37,331,729
Ensembl chr17:37,306,033...37,363,178
JBrowse link
G SIX1 SIX homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:22513373)
(PMID:16916509)
Ensembl
MGI
PMID:16916509 PMID:22513373 GO_REF:0000107 NCBI chr 8:35,676,705...35,679,534
Ensembl chr 8:35,676,479...35,679,534
JBrowse link
G SOX9 SRY-box transcription factor 9 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:8,275,049...8,278,172
Ensembl chr 9:8,275,049...8,278,172
JBrowse link
otic vesicle formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FGF10 fibroblast growth factor 10 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:14623822) Ensembl
MGI
PMID:14623822 GO_REF:0000107 NCBI chr 4:65,851,130...65,930,944
Ensembl chr 4:65,851,069...65,928,192
JBrowse link
G FGF3 fibroblast growth factor 3 acts_upstream_of_or_within ISO (PMID:17601531) MGI PMID:17601531 NCBI chr18:48,382,819...48,388,453
Ensembl chr18:48,383,222...48,389,009
JBrowse link
G FGF8 fibroblast growth factor 8 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:17601531) Ensembl
MGI
PMID:17601531 GO_REF:0000107 NCBI chr28:14,362,407...14,367,109
Ensembl chr28:14,362,109...14,367,468
JBrowse link
G FGFR2 fibroblast growth factor receptor 2 involved_in
acts_upstream_of_or_within
ISS
ISO
(PMID:9435295) UniProt
MGI
PMID:9435295 GO_REF:0000024 NCBI chr28:31,303,882...31,411,015
Ensembl chr28:31,303,894...31,411,621
JBrowse link
G HESX1 HESX homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:9620767) Ensembl
MGI
PMID:9620767 GO_REF:0000107 NCBI chr20:33,193,813...33,197,226
Ensembl chr20:33,195,123...33,196,601
JBrowse link
G SOX9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within
ISS
ISO
IEA
(PMID:18377888) UniProt
MGI
Ensembl
PMID:18377888 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:8,275,049...8,278,172
Ensembl chr 9:8,275,049...8,278,172
JBrowse link
G TCAP titin-cap involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:22,811,792...22,812,980
Ensembl chr 9:22,794,177...22,813,012
JBrowse link
otic vesicle morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EYA1 EYA transcriptional coactivator and phosphatase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16916509) Ensembl
MGI
PMID:16916509 GO_REF:0000107 NCBI chr29:20,176,306...20,595,131
Ensembl chr29:20,177,014...20,525,653
JBrowse link
G TBX1 T-box transcription factor 1 acts_upstream_of_or_within ISO (PMID:17074316) MGI PMID:17074316 NCBI chr26:29,529,071...29,533,240
Ensembl chr26:29,528,878...29,532,784
JBrowse link
otolith development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATG5 autophagy related 5 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:20577052) Ensembl
MGI
PMID:20577052 GO_REF:0000107 NCBI chr12:63,565,859...63,692,383
Ensembl chr12:63,567,568...63,683,485
JBrowse link
G NOX3 NADPH oxidase 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:10491954) Ensembl
MGI
PMID:10491954 GO_REF:0000107 NCBI chr 1:45,129,112...45,186,510
Ensembl chr 1:45,128,958...45,186,510
JBrowse link
otolith mineralization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATP2B2 ATPase plasma membrane Ca2+ transporting 2 acts_upstream_of_or_within ISO (PMID:9668038) MGI PMID:9668038 NCBI chr20:7,665,468...8,037,407
Ensembl chr20:7,749,807...8,034,474
JBrowse link
G OC90 otoconin 90 involved_in ISO (PMID:21655225), (PMID:24748133) UniProt PMID:21655225 PMID:24748133 NCBI chr13:28,680,910...28,700,816 JBrowse link
G OTOL1 otolin 1 involved_in ISO (PMID:21655225), (PMID:24748133), (PMID:29076638) UniProt PMID:21655225 PMID:24748133 PMID:29076638 NCBI chr34:27,405,456...27,454,726
Ensembl chr34:27,413,694...27,455,023
JBrowse link
otolith mineralization completed early in development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATG4B autophagy related 4B cysteine peptidase involved_in ISO (PMID:20577052) UniProt PMID:20577052 NCBI chr25:51,494,316...51,518,683
Ensembl chr25:51,504,537...51,517,659
JBrowse link
otolith morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BLOC1S5 biogenesis of lysosomal organelles complex 1 subunit 5 acts_upstream_of_or_within ISO (PMID:5367369) MGI PMID:5367369 NCBI chr35:7,860,336...7,998,461
Ensembl chr35:7,955,923...7,998,505
JBrowse link
G LRIG1 leucine rich repeats and immunoglobulin like domains 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:24086156) Ensembl
MGI
PMID:24086156 GO_REF:0000107 NCBI chr20:24,907,904...25,033,841
Ensembl chr20:24,890,191...25,032,647
JBrowse link
G LRIG3 leucine rich repeats and immunoglobulin like domains 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:24086156) Ensembl
MGI
PMID:24086156 GO_REF:0000107 NCBI chr10:2,723,836...2,772,630
Ensembl chr10:2,724,951...2,772,636
JBrowse link
G TTC39C tetratricopeptide repeat domain 39C involved_in IBA GO_Central GO_REF:0000033 NCBI chr 7:64,242,157...64,306,963
Ensembl chr 7:64,244,716...64,306,941
JBrowse link
positive regulation of inner ear auditory receptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATOH1 atonal bHLH transcription factor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:11023859), (PMID:19154718) Ensembl
MGI
PMID:11023859 PMID:19154718 GO_REF:0000107 NCBI chr32:16,807,217...16,809,294
Ensembl chr32:16,807,336...16,808,406
JBrowse link
G FGF2 fibroblast growth factor 2 acts_upstream_of_or_within ISO (PMID:12417662) MGI PMID:12417662 NCBI chr19:17,403,288...17,463,143
Ensembl chr19:16,994,661...17,463,151
JBrowse link
positive regulation of inner ear receptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATOH1 atonal bHLH transcription factor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21146598) Ensembl
MGI
PMID:21146598 GO_REF:0000107 NCBI chr32:16,807,217...16,809,294
Ensembl chr32:16,807,336...16,808,406
JBrowse link
positive regulation of otic vesicle morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G STOX1 storkhead box 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:20,013,893...20,065,480
Ensembl chr 4:20,014,007...20,060,394
JBrowse link
regulation of inner ear auditory receptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HEY1 hes related family bHLH transcription factor with YRPW motif 1 acts_upstream_of_or_within ISO (PMID:21300049) MGI PMID:21300049 NCBI chr29:27,185,191...27,188,121
Ensembl chr29:27,185,191...27,188,121
JBrowse link
G HEY2 hes related family bHLH transcription factor with YRPW motif 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:19154718) Ensembl
MGI
PMID:19154718 GO_REF:0000107 NCBI chr 1:64,630,656...64,646,546 JBrowse link
G MYCL MYCL proto-oncogene, bHLH transcription factor involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:23022312) Ensembl
MGI
PMID:23022312 GO_REF:0000107 NCBI chr15:2,975,757...3,019,313
Ensembl chr15:3,006,409...3,013,381
JBrowse link
G MYCN MYCN proto-oncogene, bHLH transcription factor acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:23022312) MGI
Ensembl
PMID:23022312 GO_REF:0000107 NCBI chr17:11,720,857...11,724,308 JBrowse link
G NOTCH1 notch receptor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:25535395) Ensembl
MGI
PMID:25535395 GO_REF:0000107 NCBI chr 9:48,975,972...49,018,985
Ensembl chr 9:48,974,757...49,017,277
JBrowse link
regulation of inner ear auditory receptor cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ESRP1 epithelial splicing regulatory protein 1 involved_in ISO (PMID:29107558) UniProt PMID:29107558 NCBI chr29:39,322,516...39,388,363
Ensembl chr29:39,333,117...39,387,337
JBrowse link
semicircular canal development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GATA2 GATA binding protein 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:20652952) Ensembl
MGI
PMID:20652952 GO_REF:0000107 NCBI chr20:2,472,251...2,488,380
Ensembl chr20:2,473,912...2,480,991
JBrowse link
semicircular canal formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HOXA1 homeobox A1 involved_in ISO (PMID:16155570) DFLAT PMID:16155570 NCBI chr14:40,267,033...40,272,212
Ensembl chr14:40,267,528...40,269,681
JBrowse link
semicircular canal fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FGF10 fibroblast growth factor 10 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:15765517) Ensembl
MGI
PMID:15765517 GO_REF:0000107 NCBI chr 4:65,851,130...65,930,944
Ensembl chr 4:65,851,069...65,928,192
JBrowse link
semicircular canal morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHD7 chromodomain helicase DNA binding protein 7 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:19855134) Ensembl
MGI
PMID:19855134 GO_REF:0000107 NCBI chr29:11,115,865...11,284,713
Ensembl chr29:11,156,340...11,283,627
JBrowse link
G EYA1 EYA transcriptional coactivator and phosphatase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:10072433) Ensembl
MGI
PMID:10072433 GO_REF:0000107 NCBI chr29:20,176,306...20,595,131
Ensembl chr29:20,177,014...20,525,653
JBrowse link
G FGF10 fibroblast growth factor 10 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:17601531) Ensembl
MGI
PMID:17601531 GO_REF:0000107 NCBI chr 4:65,851,130...65,930,944
Ensembl chr 4:65,851,069...65,928,192
JBrowse link
G FGF3 fibroblast growth factor 3 acts_upstream_of_or_within ISO (PMID:17601531) MGI PMID:17601531 NCBI chr18:48,382,819...48,388,453
Ensembl chr18:48,383,222...48,389,009
JBrowse link
G NR4A3 nuclear receptor subfamily 4 group A member 3 acts_upstream_of_or_within ISO (PMID:11784868) MGI PMID:11784868 NCBI chr11:56,806,506...56,846,997
Ensembl chr11:56,812,804...56,847,689
JBrowse link
G SPARC secreted protein acidic and cysteine rich involved_in IBA GO_Central GO_REF:0000033 NCBI chr 4:57,659,541...57,682,147
Ensembl chr 4:57,659,650...57,681,711
JBrowse link
G TBX1 T-box transcription factor 1 acts_upstream_of_or_within ISO (PMID:19855134) MGI PMID:19855134 NCBI chr26:29,529,071...29,533,240
Ensembl chr26:29,528,878...29,532,784
JBrowse link
G TBX3 T-box transcription factor 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr26:11,694,885...11,709,594
Ensembl chr26:11,696,565...11,708,918
JBrowse link
G ZEB1 zinc finger E-box binding homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21980308) Ensembl
MGI
PMID:21980308 GO_REF:0000107 NCBI chr 2:15,300,401...15,481,535
Ensembl chr 2:15,299,723...15,481,495
JBrowse link
stereocilium maintenance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CLRN2 clarin 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:31448880) Ensembl
MGI
PMID:31448880 GO_REF:0000107 NCBI chr 3:62,958,242...62,967,878
Ensembl chr 3:62,959,224...62,967,994
JBrowse link
G ELMOD3 ELMO domain containing 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:31628468) MGI
Ensembl
PMID:31628468 GO_REF:0000107 NCBI chr17:39,642,101...39,668,079
Ensembl chr17:39,643,676...39,665,726
JBrowse link
G PJVK pejvakin involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:28209736) Ensembl
MGI
PMID:28209736 GO_REF:0000107 NCBI chr36:22,080,574...22,087,537
Ensembl chr36:22,040,303...22,092,249
JBrowse link
G TPRN taperin involved_in IEA
IBA
Ensembl
GO_Central
GO_REF:0000033 GO_REF:0000107
vestibular receptor cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GRXCR1 glutaredoxin and cysteine rich domain containing 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:39,766,910...39,882,076
Ensembl chr13:39,766,919...39,882,086
JBrowse link
vestibular receptor cell morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PTPRQ protein tyrosine phosphatase receptor type Q involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:22357859) Ensembl
MGI
PMID:22357859 GO_REF:0000107 NCBI chr15:22,771,653...23,017,694
Ensembl chr15:22,825,348...23,013,762
JBrowse link
vestibular receptor cell stereocilium organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PLS1 plastin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr23:38,243,631...38,347,195
Ensembl chr23:38,243,024...38,347,202
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 22117
    developmental process 6922
      anatomical structure development 6481
        inner ear development 255
          cochlea development + 69
          inner ear morphogenesis + 127
          inner ear receptor cell differentiation + 96
          otic vesicle development + 15
          otolith development + 10
          semicircular canal development + 12
Path 2
Term Annotations click to browse term
  biological_process 22117
    developmental process 6922
      anatomical structure development 6481
        animal organ development 3587
          sensory organ development 750
            ear development 284
              inner ear development 255
                cochlea development + 69
                inner ear morphogenesis + 127
                inner ear receptor cell differentiation + 96
                otic vesicle development + 15
                otolith development + 10
                semicircular canal development + 12
paths to the root