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ONTOLOGY REPORT - ANNOTATIONS


Term:mesenchymal cell differentiation
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Accession:GO:0048762 term browser browse the term
Definition:The process in which a relatively unspecialized cell acquires specialized features of a mesenchymal cell. A mesenchymal cell is a loosely associated cell that is part of the connective tissue in an organism. Mesenchymal cells give rise to more mature connective tissue cell types.



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mesenchymal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp2 bone morphogenetic protein 2 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 2:133,552,159...133,562,896
Ensembl chr 2:133,552,159...133,562,885
JBrowse link
G Bmp7 bone morphogenetic protein 7 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 2:172,868,012...172,940,321
Ensembl chr 2:172,868,012...172,940,321
JBrowse link
G Fgfr1 fibroblast growth factor receptor 1 acts_upstream_of_or_within IGI (MGI:3620275|PMID:16442091) MGI PMID:16442091 MGI:3620275 NCBI chr 8:25,518,759...25,575,718
Ensembl chr 8:25,513,654...25,575,718
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within IGI (MGI:3620275|PMID:16442091) MGI PMID:16442091 MGI:3620275 NCBI chr 7:130,162,451...130,266,808
Ensembl chr 7:130,162,451...133,123,350
JBrowse link
G Foxc1 forkhead box C1 acts_upstream_of_or_within IMP (MGI:1261705|PMID:9635428) MGI PMID:9635428 MGI:1261705 NCBI chr13:31,806,646...31,810,635
Ensembl chr13:31,806,633...31,812,476
JBrowse link
G Hmga2 high mobility group AT-hook 2 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr10:120,361,268...120,476,469
Ensembl chr10:120,361,275...120,476,469
JBrowse link
G Isl1 ISL1 transcription factor, LIM/homeodomain acts_upstream_of_or_within IMP (MGI:85032|PMID:9000074) MGI PMID:9000074 MGI:85032 NCBI chr13:116,298,270...116,309,688
Ensembl chr13:116,298,281...116,309,689
JBrowse link
G Nog noggin acts_upstream_of_or_within
involved_in
IMP
ISO
(MGI:3771245|PMID:18028901) MGI
RGD
PMID:18028901 PMID:21238590 GO_REF:0000096 MGI:3771245 MGI:4417868 RGD:12801486 NCBI chr11:89,300,638...89,302,559
Ensembl chr11:89,300,638...89,302,332
JBrowse link
G Plaur plasminogen activator, urokinase receptor involved_in ISO RGD
MGI
PMID:11798065 GO_REF:0000096 MGI:4417868 RGD:729659 NCBI chr 7:24,460,937...24,475,970
Ensembl chr 7:24,462,484...24,475,968
JBrowse link
G Wwtr1 WW domain containing transcription regulator 1 acts_upstream_of_or_within IMP (MGI:3758168|PMID:17636028) MGI PMID:17636028 MGI:3758168 NCBI chr 3:57,455,644...57,575,910
Ensembl chr 3:57,455,649...57,575,910
JBrowse link
G Zfp64 zinc finger protein 64 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 2:168,893,331...168,955,587
Ensembl chr 2:168,893,331...168,955,587
JBrowse link
canonical Wnt signaling pathway involved in cardiac neural crest cell differentiation involved in heart development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrp6 low density lipoprotein receptor-related protein 6 acts_upstream_of_or_within IMP (MGI:4413394|PMID:19705442) MGI PMID:19705442 MGI:4413394 NCBI chr 6:134,446,476...134,566,913
Ensembl chr 6:134,446,476...134,566,965
JBrowse link
canonical Wnt signaling pathway involved in positive regulation of epithelial to mesenchymal transition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnb1 catenin (cadherin associated protein), beta 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 9:120,933,400...120,960,507
Ensembl chr 9:120,929,216...120,960,507
JBrowse link
G Tcf7l2 transcription factor 7 like 2, T cell specific, HMG box involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr19:55,741,797...55,933,659
Ensembl chr19:55,741,820...55,933,654
JBrowse link
cardiac endothelial to mesenchymal transition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sema3c sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C involved_in IDA (MGI:5693177|PMID:26053665) BHF-UCL PMID:26053665 MGI:5693177 NCBI chr 5:17,574,816...17,730,268
Ensembl chr 5:17,574,281...17,730,268
JBrowse link
cardiac epithelial to mesenchymal transition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adam15 a disintegrin and metallopeptidase domain 15 (metargidin) acts_upstream_of_or_within IMP (MGI:4458867|PMID:19156209) MGI PMID:19156209 MGI:4458867 NCBI chr 3:89,339,640...89,350,028
Ensembl chr 3:89,338,542...89,349,996
JBrowse link
G Bmp2 bone morphogenetic protein 2 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 2:133,552,159...133,562,896
Ensembl chr 2:133,552,159...133,562,885
JBrowse link
G Hey1 hairy/enhancer-of-split related with YRPW motif 1 involved_in IGI (MGI:3783952|PMID:17303760) BHF-UCL PMID:17303760 MGI:3783952 NCBI chr 3:8,663,359...8,667,038
Ensembl chr 3:8,663,359...8,667,256
JBrowse link
G Hey2 hairy/enhancer-of-split related with YRPW motif 2 involved_in IMP (MGI:3783952|PMID:17303760) BHF-UCL PMID:17303760 MGI:3783952 NCBI chr10:30,832,359...30,842,783
Ensembl chr10:30,832,359...30,842,801
JBrowse link
G Heyl hairy/enhancer-of-split related with YRPW motif-like involved_in IGI (MGI:3783952|PMID:17303760) BHF-UCL PMID:17303760 MGI:3783952 NCBI chr 4:123,233,556...123,249,870
Ensembl chr 4:123,233,556...123,249,875
JBrowse link
G Notch1 notch 1 involved_in IMP (MGI:3783952|PMID:17303760) BHF-UCL PMID:17303760 MGI:3783952 NCBI chr 2:26,457,902...26,503,822
Ensembl chr 2:26,457,903...26,516,663
JBrowse link
G Rtn4 reticulon 4 acts_upstream_of_or_within IMP (MGI:4458867|PMID:19156209) MGI PMID:19156209 MGI:4458867 NCBI chr11:29,692,898...29,744,414
Ensembl chr11:29,692,947...29,744,331
JBrowse link
G Tbx3 T-box 3 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 5:119,670,534...119,684,724
Ensembl chr 5:119,670,669...119,684,724
JBrowse link
G Tgfb2 transforming growth factor, beta 2 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 1:186,622,787...186,709,697
Ensembl chr 1:186,622,792...186,705,989
JBrowse link
G Tgfbr3 transforming growth factor, beta receptor III involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 5:107,106,567...107,289,629
Ensembl chr 5:107,106,570...107,289,629
JBrowse link
G Wnt16 wingless-type MMTV integration site family, member 16 acts_upstream_of_or_within IMP (MGI:4458867|PMID:19156209) MGI PMID:19156209 MGI:4458867 NCBI chr 6:22,288,178...22,298,522
Ensembl chr 6:22,288,227...22,298,522
JBrowse link
G Wnt2 wingless-type MMTV integration site family, member 2 acts_upstream_of_or_within IMP (MGI:4439199|PMID:20159597) MGI PMID:20159597 MGI:4439199 NCBI chr 6:17,985,474...18,032,772
Ensembl chr 6:17,988,940...18,030,585
JBrowse link
cardiac neural crest cell development involved in heart development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 acts_upstream_of_or_within IMP (MGI:2179743|PMID:11694877) MGI PMID:11694877 MGI:2179743 NCBI chr10:17,723,228...17,725,674
Ensembl chr10:17,723,218...17,725,674
JBrowse link
G Mapk1 mitogen-activated protein kinase 1 acts_upstream_of_or_within IGI (MGI:3832113|PMID:18952847) MGI PMID:18952847 MGI:3832113 NCBI chr16:16,983,382...17,047,453
Ensembl chr16:16,983,382...17,047,453
JBrowse link
G Mapk3 mitogen-activated protein kinase 3 acts_upstream_of_or_within IGI (MGI:3832113|PMID:18952847) MGI PMID:18952847 MGI:3832113 NCBI chr 7:126,759,626...126,765,816
Ensembl chr 7:126,759,601...126,765,819
JBrowse link
cardiac neural crest cell development involved in outflow tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dicer1 dicer 1, ribonuclease type III acts_upstream_of_or_within IMP (MGI:4849577|PMID:21098571) MGI PMID:21098571 MGI:4849577 NCBI chr12:104,687,740...104,751,968
Ensembl chr12:104,687,742...104,751,952
JBrowse link
G Hand2 heart and neural crest derivatives expressed 2 involved_in IMP (MGI:4413411|PMID:19008477) BHF-UCL PMID:19008477 MGI:4413411 NCBI chr 8:57,320,983...57,324,517
Ensembl chr 8:57,320,983...57,324,633
JBrowse link
G Hes1 hes family bHLH transcription factor 1 acts_upstream_of_or_within IMP (MGI:4354447|PMID:19609448) MGI PMID:19609448 MGI:4354447 NCBI chr16:30,065,357...30,067,796
Ensembl chr16:30,064,384...30,067,796
JBrowse link
G Jag1 jagged 1 involved_in IMP (MGI:4359139|PMID:19509466) BHF-UCL PMID:19509466 MGI:4359139 NCBI chr 2:137,081,451...137,116,520
Ensembl chr 2:137,081,456...137,116,644
JBrowse link
G Mir452 microRNA 452 acts_upstream_of_or_within IDA (MGI:4849577|PMID:21098571) MGI PMID:21098571 MGI:4849577 NCBI chr  X:72,262,224...72,262,308
Ensembl chr  X:72,262,224...72,262,308
JBrowse link
G Twist1 twist basic helix-loop-helix transcription factor 1 acts_upstream_of_or_within IMP (MGI:3805126|PMID:18539270) MGI PMID:18539270 MGI:3805126 NCBI chr12:33,957,671...33,959,831
Ensembl chr12:33,957,671...33,959,829
JBrowse link
cardiac neural crest cell migration involved in outflow tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdc42 cell division cycle 42 involved_in IMP (MGI:6362316|PMID:31219639) MGI PMID:31219639 MGI:6362316 NCBI chr 4:137,319,696...137,357,759
Ensembl chr 4:137,319,696...137,357,720
JBrowse link
G Edn1 endothelin 1 involved_in IDA (MGI:6362316|PMID:31219639) MGI PMID:31219639 MGI:6362316 NCBI chr13:42,301,476...42,307,990
Ensembl chr13:42,301,476...42,307,990
JBrowse link
G Ednra endothelin receptor type A involved_in IMP (MGI:6362316|PMID:31219639) MGI PMID:31219639 MGI:6362316 NCBI chr 8:77,663,029...77,724,452
Ensembl chr 8:77,663,031...77,724,464
JBrowse link
G Folr1 folate receptor 1 (adult) involved_in IMP (MGI:3721767|PMID:17286298) BHF-UCL PMID:17286298 MGI:3721767 NCBI chr 7:101,858,331...101,870,788
Ensembl chr 7:101,858,331...101,870,788
JBrowse link
G Hand2 heart and neural crest derivatives expressed 2 acts_upstream_of_or_within IMP (MGI:4453274|PMID:20144608) MGI PMID:20144608 MGI:4453274 NCBI chr 8:57,320,983...57,324,517
Ensembl chr 8:57,320,983...57,324,633
JBrowse link
G Nrp1 neuropilin 1 NOT|involved_in IMP (MGI:5693177|PMID:26053665) BHF-UCL PMID:26053665 MGI:5693177 NCBI chr 8:128,358,591...128,505,476
Ensembl chr 8:128,358,604...128,503,363
JBrowse link
G Pitx2 paired-like homeodomain transcription factor 2 involved_in IMP (MGI:2446944|PMID:12464179) BHF-UCL PMID:12464179 MGI:2446944 NCBI chr 3:129,199,878...129,219,594
Ensembl chr 3:129,199,878...129,219,591
JBrowse link
G Twist1 twist basic helix-loop-helix transcription factor 1 acts_upstream_of_or_within IMP (MGI:3805126|PMID:18539270) MGI PMID:18539270 MGI:3805126 NCBI chr12:33,957,671...33,959,831
Ensembl chr12:33,957,671...33,959,829
JBrowse link
endocardial cushion to mesenchymal transition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvrl1 activin A receptor, type II-like 1 NOT|involved_in IMP (MGI:2674189|PMID:12941632) BHF-UCL PMID:12941632 MGI:2674189 NCBI chr15:101,128,522...101,145,336
Ensembl chr15:101,128,522...101,145,336
JBrowse link
G Eng endoglin NOT|involved_in IMP (MGI:2674189|PMID:12941632) BHF-UCL PMID:12941632 MGI:2674189 NCBI chr 2:32,646,595...32,682,669
Ensembl chr 2:32,646,595...32,682,669
JBrowse link
G Has2 hyaluronan synthase 2 involved_in IMP (MGI:1861536|PMID:10930438) UniProt PMID:10930438 MGI:1861536 NCBI chr15:56,665,627...56,694,546
Ensembl chr15:56,665,627...56,694,539
JBrowse link
endocardial cushion to mesenchymal transition involved in heart valve formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Efna1 ephrin A1 involved_in IMP (MGI:4847981|PMID:20960543) BHF-UCL PMID:20960543 MGI:4847981 NCBI chr 3:89,271,730...89,280,951
Ensembl chr 3:89,271,733...89,281,142
JBrowse link
G Erg ETS transcription factor acts_upstream_of_or_within IMP (MGI:5442628|PMID:22932696) MGI PMID:22932696 MGI:5442628 NCBI chr16:95,359,169...95,586,600
Ensembl chr16:95,359,169...95,586,593
JBrowse link
G Hey1 hairy/enhancer-of-split related with YRPW motif 1 acts_upstream_of_or_within IGI (MGI:3530185|PMID:15680351) MGI PMID:15680351 MGI:3530185 NCBI chr 3:8,663,359...8,667,038
Ensembl chr 3:8,663,359...8,667,256
JBrowse link
G Hey2 hairy/enhancer-of-split related with YRPW motif 2 acts_upstream_of_or_within IGI (MGI:3530185|PMID:15680351) MGI PMID:15680351 MGI:3530185 NCBI chr10:30,832,359...30,842,783
Ensembl chr10:30,832,359...30,842,801
JBrowse link
epicardial cell to mesenchymal cell transition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gja1 gap junction protein, alpha 1 involved_in TAS (MGI:4943617|PMID:20299672) DFLAT PMID:20299672 MGI:4943617 NCBI chr10:56,377,300...56,390,419
Ensembl chr10:56,377,330...56,402,513
JBrowse link
G Tgfbr3 transforming growth factor, beta receptor III involved_in TAS (MGI:4943617|PMID:20299672) DFLAT PMID:20299672 MGI:4943617 NCBI chr 5:107,106,567...107,289,629
Ensembl chr 5:107,106,570...107,289,629
JBrowse link
G Vangl2 VANGL planar cell polarity 2 involved_in TAS (MGI:4943617|PMID:20299672) DFLAT PMID:20299672 MGI:4943617 NCBI chr 1:172,000,960...172,027,318
Ensembl chr 1:172,000,960...172,028,444
JBrowse link
epithelial to mesenchymal transition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Akna AT-hook transcription factor involved_in IDA
IBA
(MGI:6294240|PMID:30787442)
(MGI:6201960|PMID:21873635)
UniProt
GO_Central
PMID:21873635 PMID:30787442 MGI:6201960 MGI:6294240 NCBI chr 4:63,367,123...63,411,094
Ensembl chr 4:63,367,125...63,403,354
JBrowse link
G Bmp2 bone morphogenetic protein 2 involved_in
acts_upstream_of_or_within
ISO
IMP
(MGI:3044331|PMID:15110716)
(MGI:3640731|PMID:16730346), (MGI:5299248|PMID:21983003)
MGI
BHF-UCL
PMID:15110716 PMID:16730346 PMID:21983003 GO_REF:0000096 MGI:3044331 MGI:3640731 MGI:4834177 MGI:5299248 NCBI chr 2:133,552,159...133,562,896
Ensembl chr 2:133,552,159...133,562,885
JBrowse link
G Cul7 cullin 7 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr17:46,650,338...46,664,364
Ensembl chr17:46,650,337...46,664,364
JBrowse link
G Ddx17 DEAD box helicase 17 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr15:79,527,696...79,546,764
Ensembl chr15:79,527,736...79,546,741
JBrowse link
G Ddx5 DEAD box helicase 5 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr11:106,780,355...106,789,185
Ensembl chr11:106,780,355...106,789,185
JBrowse link
G Dlg5 discs large MAGUK scaffold protein 5 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr14:24,133,953...24,245,920
Ensembl chr14:24,133,953...24,245,920
JBrowse link
G Eng endoglin involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 2:32,646,595...32,682,669
Ensembl chr 2:32,646,595...32,682,669
JBrowse link
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 involved_in IMP (MGI:3714667|PMID:17507402)
(MGI:3821807|PMID:18794329)
MGI PMID:17507402 PMID:18794329 MGI:3714667 MGI:3821807 NCBI chr 1:119,545,032...119,649,096
Ensembl chr 1:119,545,037...119,649,000
JBrowse link
G Fam83d family with sequence similarity 83, member D involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 2:158,768,099...158,786,637
Ensembl chr 2:158,768,093...158,786,637
JBrowse link
G Fgfr1 fibroblast growth factor receptor 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 8:25,518,759...25,575,718
Ensembl chr 8:25,513,654...25,575,718
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 involved_in ISO RGD
MGI
PMID:7803853 GO_REF:0000096 MGI:4417868 RGD:632663 NCBI chr 7:130,162,451...130,266,808
Ensembl chr 7:130,162,451...133,123,350
JBrowse link
G Flna filamin, alpha acts_upstream_of_or_within IGI (MGI:5085960|PMID:21709252) MGI PMID:21709252 MGI:5085960 NCBI chr  X:74,223,461...74,249,854
Ensembl chr  X:74,223,461...74,249,820
JBrowse link
G Gsk3b glycogen synthase kinase 3 beta involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr16:38,089,001...38,246,084
Ensembl chr16:38,089,001...38,246,084
JBrowse link
G Hif1a hypoxia inducible factor 1, alpha subunit involved_in IMP (MGI:3772289|PMID:18037992) BHF-UCL PMID:18037992 MGI:3772289 NCBI chr12:73,901,324...73,947,554
Ensembl chr12:73,901,375...73,947,530
JBrowse link
G Hmga2 high mobility group AT-hook 2 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr10:120,361,268...120,476,469
Ensembl chr10:120,361,275...120,476,469
JBrowse link
G Hnrnpab heterogeneous nuclear ribonucleoprotein A/B involved_in IDA (MGI:3698386|PMID:17273560) HGNC-UCL PMID:17273560 MGI:3698386 NCBI chr11:51,600,100...51,606,881
Ensembl chr11:51,600,100...51,606,847
JBrowse link
G Lef1 lymphoid enhancer binding factor 1 involved_in IMP (MGI:2683382|PMID:14691138) BHF-UCL PMID:14691138 MGI:2683382 NCBI chr 3:131,110,297...131,224,357
Ensembl chr 3:131,110,471...131,224,356
JBrowse link
G Lims1 LIM and senescent cell antigen-like domains 1 NOT|involved_in ISO (PMID:20926685) UniProt PMID:20926685 NCBI chr10:58,323,342...58,424,691
Ensembl chr10:58,323,466...58,424,691
JBrowse link
G Loxl2 lysyl oxidase-like 2 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr14:69,608,692...69,695,834
Ensembl chr14:69,609,068...69,695,834
JBrowse link
G Loxl3 lysyl oxidase-like 3 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 6:83,034,205...83,052,566
Ensembl chr 6:83,034,173...83,052,562
JBrowse link
G Msx1 msh homeobox 1 involved_in IMP (MGI:4418636|PMID:11023873) UniProt PMID:11023873 MGI:4418636 NCBI chr 5:37,820,491...37,824,585
Ensembl chr 5:37,820,485...37,824,583
JBrowse link
G Nfatc1 nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 1 acts_upstream_of_or_within IMP (MGI:3053252|PMID:15339668) MGI PMID:15339668 MGI:3053252 NCBI chr18:80,606,205...80,713,071
Ensembl chr18:80,606,205...80,713,071
JBrowse link
G Nog noggin involved_in IMP (MGI:3783944|PMID:17218603) BHF-UCL PMID:17218603 MGI:3783944 NCBI chr11:89,300,638...89,302,559
Ensembl chr11:89,300,638...89,302,332
JBrowse link
G Notch1 notch 1 acts_upstream_of_or_within
involved_in
IMP
ISO
(MGI:3027664|PMID:14701881) MGI PMID:14701881 GO_REF:0000096 MGI:3027664 MGI:4834177 NCBI chr 2:26,457,902...26,503,822
Ensembl chr 2:26,457,903...26,516,663
JBrowse link
G Notch4 notch 4 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr17:34,564,286...34,588,543
Ensembl chr17:34,564,268...34,588,503
JBrowse link
G Ppp3r1 protein phosphatase 3, regulatory subunit B, alpha isoform (calcineurin B, type I) acts_upstream_of_or_within IMP (MGI:3053252|PMID:15339668) MGI PMID:15339668 MGI:3053252 NCBI chr11:17,159,298...17,200,380
Ensembl chr11:17,159,263...17,200,375
JBrowse link
G Rbpj recombination signal binding protein for immunoglobulin kappa J region acts_upstream_of_or_within IMP (MGI:3027664|PMID:14701881) MGI PMID:14701881 MGI:3027664 NCBI chr 5:53,555,779...53,657,445
Ensembl chr 5:53,466,152...53,657,362
JBrowse link
G Rflnb refilin B acts_upstream_of_or_within IGI (MGI:5085960|PMID:21709252) MGI PMID:21709252 MGI:5085960 NCBI chr11:76,019,194...76,027,782
Ensembl chr11:76,019,194...76,027,782
JBrowse link
G Rian RNA imprinted and accumulated in nucleus acts_upstream_of_or_within IMP (MGI:6272541|PMID:29636669) MGI PMID:29636669 MGI:6272541 NCBI chr12:109,603,945...109,661,716
Ensembl chr12:109,603,808...109,661,716
JBrowse link
G Rock1 Rho-associated coiled-coil containing protein kinase 1 involved_in IGI (MGI:3513217|PMID:15464581) BHF-UCL PMID:15464581 MGI:3513217 NCBI chr18:10,064,401...10,182,251
Ensembl chr18:10,064,401...10,182,045
JBrowse link
G Rock2 Rho-associated coiled-coil containing protein kinase 2 involved_in IGI (MGI:3513217|PMID:15464581) BHF-UCL PMID:15464581 MGI:3513217 NCBI chr12:16,894,978...16,988,274
Ensembl chr12:16,894,895...16,987,823
JBrowse link
G Snai1 snail family zinc finger 1 involved_in IDA
IMP
ISO
(MGI:1352954|PMID:10655586)
(MGI:2153695|PMID:11689706), (MGI:5294539|PMID:18832382)
UniProt
MGI
PMID:10655586 PMID:11689706 PMID:18832382 GO_REF:0000096 MGI:1352954 MGI:2153695 MGI:4834177 MGI:5294539 NCBI chr 2:167,538,195...167,542,814
Ensembl chr 2:167,538,195...167,542,814
JBrowse link
G Snai2 snail family zinc finger 2 involved_in
acts_upstream_of_or_within
ISO
IMP
(MGI:892810|PMID:9182671)
(MGI:3762325|PMID:17916597)
MGI
BHF-UCL
PMID:9182671 PMID:17916597 GO_REF:0000096 MGI:3762325 MGI:4834177 MGI:892810 NCBI chr16:14,705,852...14,709,395
Ensembl chr16:14,705,852...14,709,385
JBrowse link
G Sox9 SRY (sex determining region Y)-box 9 acts_upstream_of_or_within IMP (MGI:3041362|PMID:15096597) MGI PMID:15096597 MGI:3041362 NCBI chr11:112,782,210...112,787,757
Ensembl chr11:112,782,224...112,787,760
JBrowse link
G Tgfb1 transforming growth factor, beta 1 involved_in
acts_upstream_of_or_within
ISO (MGI:6147436|PMID:29529050) MGI
RGD
PMID:10504497 PMID:29529050 GO_REF:0000096 MGI:4417868 MGI:4834177 MGI:6147436 RGD:1578678 NCBI chr 7:25,687,002...25,705,077
Ensembl chr 7:25,687,002...25,705,077
JBrowse link
G Tgfb2 transforming growth factor, beta 2 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 1:186,622,787...186,709,697
Ensembl chr 1:186,622,792...186,705,989
JBrowse link
G Tgfbr1 transforming growth factor, beta receptor I involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 4:47,353,222...47,414,926
Ensembl chr 4:47,353,222...47,414,931
JBrowse link
G Tgfbr3 transforming growth factor, beta receptor III involved_in ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr 5:107,106,567...107,289,629
Ensembl chr 5:107,106,570...107,289,629
JBrowse link
G Tgfbr3l transforming growth factor, beta receptor III-like involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 8:4,248,214...4,251,423
Ensembl chr 8:4,248,214...4,251,423
JBrowse link
G Trim28 tripartite motif-containing 28 involved_in IDA (MGI:3698386|PMID:17273560) HGNC-UCL PMID:17273560 MGI:3698386 NCBI chr 7:13,024,152...13,031,032
Ensembl chr 7:12,999,114...13,031,035
JBrowse link
G Trip10 thyroid hormone receptor interactor 10 involved_in ISO RGD
MGI
PMID:23819628 GO_REF:0000096 MGI:4417868 RGD:11535143 NCBI chr17:57,233,220...57,263,697
Ensembl chr17:57,249,455...57,263,665
JBrowse link
G Wnt11 wingless-type MMTV integration site family, member 11 acts_upstream_of_or_within IGI (MGI:5634837|PMID:25813538) MGI PMID:25813538 MGI:5634837 NCBI chr 7:98,835,084...98,854,747
Ensembl chr 7:98,835,112...98,855,195
JBrowse link
G Wnt4 wingless-type MMTV integration site family, member 4 involved_in ISO (PMID:12841867) UniProt PMID:12841867 NCBI chr 4:137,277,635...137,299,501
Ensembl chr 4:137,277,489...137,299,726
JBrowse link
G Wnt5a wingless-type MMTV integration site family, member 5A involved_in ISO (PMID:12841867) UniProt PMID:12841867 NCBI chr14:28,504,543...28,527,448
Ensembl chr14:28,504,750...28,527,448
JBrowse link
epithelial to mesenchymal transition involved in cardiac fibroblast development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pdcd4 programmed cell death 4 involved_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr19:53,892,231...53,937,592
Ensembl chr19:53,892,231...53,929,860
JBrowse link
G Spry1 sprouty RTK signaling antagonist 1 involved_in ISO PMID:23441172 BHF-UCL PMID:23441172 RGD:10400865 NCBI chr 3:37,639,947...37,644,599
Ensembl chr 3:37,639,947...37,644,598
JBrowse link
epithelial to mesenchymal transition involved in endocardial cushion formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 NOT|involved_in IMP (MGI:3814273|PMID:18924235) BHF-UCL PMID:18924235 MGI:3814273 NCBI chr14:46,383,525...46,390,669
Ensembl chr14:46,383,520...46,390,669
JBrowse link
G Eng endoglin involved_in IMP (MGI:4368063|PMID:19703439) BHF-UCL PMID:19703439 MGI:4368063 NCBI chr 2:32,646,595...32,682,669
Ensembl chr 2:32,646,595...32,682,669
JBrowse link
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within
involved_in
IDA
IMP
(MGI:5002778|PMID:21364285)
(MGI:4359139|PMID:19509466)
MGI
BHF-UCL
PMID:19509466 PMID:21364285 MGI:4359139 MGI:5002778 NCBI chr19:45,736,491...45,742,941
Ensembl chr19:45,736,798...45,742,915
JBrowse link
G Hey1 hairy/enhancer-of-split related with YRPW motif 1 acts_upstream_of_or_within IGI (MGI:3783952|PMID:17303760) MGI PMID:17303760 MGI:3783952 NCBI chr 3:8,663,359...8,667,038
Ensembl chr 3:8,663,359...8,667,256
JBrowse link
G Heyl hairy/enhancer-of-split related with YRPW motif-like acts_upstream_of_or_within IGI (MGI:3783952|PMID:17303760) MGI PMID:17303760 MGI:3783952 NCBI chr 4:123,233,556...123,249,870
Ensembl chr 4:123,233,556...123,249,875
JBrowse link
G Msx1 msh homeobox 1 acts_upstream_of_or_within IGI (MGI:3810851|PMID:18667074) MGI PMID:18667074 MGI:3810851 NCBI chr 5:37,820,491...37,824,585
Ensembl chr 5:37,820,485...37,824,583
JBrowse link
G Msx2 msh homeobox 2 acts_upstream_of_or_within IGI (MGI:3810851|PMID:18667074) MGI PMID:18667074 MGI:3810851 NCBI chr13:53,466,881...53,472,780
Ensembl chr13:53,466,884...53,473,074
JBrowse link
G Notch1 notch 1 involved_in IMP (MGI:3027664|PMID:14701881) BHF-UCL PMID:14701881 MGI:3027664 NCBI chr 2:26,457,902...26,503,822
Ensembl chr 2:26,457,903...26,516,663
JBrowse link
G Rbpj recombination signal binding protein for immunoglobulin kappa J region involved_in IMP (MGI:3027664|PMID:14701881) BHF-UCL PMID:14701881 MGI:3027664 NCBI chr 5:53,555,779...53,657,445
Ensembl chr 5:53,466,152...53,657,362
JBrowse link
G Smad4 SMAD family member 4 involved_in IMP (MGI:4946551|PMID:21330551) BHF-UCL PMID:21330551 MGI:4946551 NCBI chr18:73,634,790...73,703,791
Ensembl chr18:73,639,009...73,703,780
JBrowse link
G Snai1 snail family zinc finger 1 involved_in IGI (MGI:3808643|PMID:18663143) BHF-UCL PMID:18663143 MGI:3808643 NCBI chr 2:167,538,195...167,542,814
Ensembl chr 2:167,538,195...167,542,814
JBrowse link
G Snai2 snail family zinc finger 2 acts_upstream_of_or_within IMP (MGI:3808643|PMID:18663143) MGI PMID:18663143 MGI:3808643 NCBI chr16:14,705,852...14,709,395
Ensembl chr16:14,705,852...14,709,385
JBrowse link
G Tmem100 transmembrane protein 100 acts_upstream_of_or_within IMP (MGI:5613881|PMID:25318679) MGI PMID:25318679 MGI:5613881 NCBI chr11:90,030,348...90,036,508
Ensembl chr11:90,030,348...90,036,508
JBrowse link
mesenchymal cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alx1 ALX homeobox 1 acts_upstream_of_or_within IMP (MGI:81193|PMID:8673125) MGI PMID:8673125 MGI:81193 NCBI chr10:103,007,847...103,029,549
Ensembl chr10:102,998,707...103,030,215
JBrowse link
G Bcl2 B cell leukemia/lymphoma 2 acts_upstream_of_or_within IMP (MGI:81253|PMID:8623928) MGI PMID:8623928 MGI:81253 NCBI chr 1:106,538,176...106,714,290
Ensembl chr 1:106,538,178...106,714,274
JBrowse link
G Foxc1 forkhead box C1 involved_in IDA (MGI:5569870|PMID:24590069) UniProt PMID:24590069 MGI:5569870 NCBI chr13:31,806,646...31,810,635
Ensembl chr13:31,806,633...31,812,476
JBrowse link
G Hey1 hairy/enhancer-of-split related with YRPW motif 1 involved_in IGI (MGI:3783952|PMID:17303760) BHF-UCL PMID:17303760 MGI:3783952 NCBI chr 3:8,663,359...8,667,038
Ensembl chr 3:8,663,359...8,667,256
JBrowse link
G Hey2 hairy/enhancer-of-split related with YRPW motif 2 involved_in IMP (MGI:3783952|PMID:17303760) BHF-UCL PMID:17303760 MGI:3783952 NCBI chr10:30,832,359...30,842,783
Ensembl chr10:30,832,359...30,842,801
JBrowse link
G Heyl hairy/enhancer-of-split related with YRPW motif-like involved_in IGI (MGI:3783952|PMID:17303760) BHF-UCL PMID:17303760 MGI:3783952 NCBI chr 4:123,233,556...123,249,870
Ensembl chr 4:123,233,556...123,249,875
JBrowse link
G Notch1 notch 1 involved_in IMP (MGI:3783952|PMID:17303760) BHF-UCL PMID:17303760 MGI:3783952 NCBI chr 2:26,457,902...26,503,822
Ensembl chr 2:26,457,903...26,516,663
JBrowse link
G Tbx20 T-box 20 involved_in IMP (MGI:5299248|PMID:21983003) BHF-UCL PMID:21983003 MGI:5299248 NCBI chr 9:24,720,812...24,774,303
Ensembl chr 9:24,718,138...24,774,303
JBrowse link
mesenchymal cell differentiation involved in bone development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within IMP (MGI:4834113|PMID:20404326) MGI PMID:20404326 MGI:4834113 NCBI chr15:53,068,261...53,346,183
Ensembl chr15:53,064,038...53,346,159
JBrowse link
G Ranbp3l RAN binding protein 3-like involved_in IMP (MGI:5883200|PMID:25755279) UniProt PMID:25755279 MGI:5883200 NCBI chr15:8,967,949...9,067,335
Ensembl chr15:8,967,949...9,067,335
JBrowse link
mesenchymal cell differentiation involved in kidney development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Amer1 APC membrane recruitment 1 acts_upstream_of_or_within IMP (MGI:5013668|PMID:21571217) MGI PMID:21571217 MGI:5013668 NCBI chr  X:95,420,313...95,444,840
Ensembl chr  X:95,420,318...95,444,872
JBrowse link
G Bmp4 bone morphogenetic protein 4 involved_in IMP (MGI:3710018|PMID:17442697) UniProt PMID:17442697 MGI:3710018 NCBI chr14:46,383,525...46,390,669
Ensembl chr14:46,383,520...46,390,669
JBrowse link
G Six2 sine oculis-related homeobox 2 involved_in IMP (MGI:3691408|PMID:17036046) UniProt PMID:17036046 MGI:3691408 NCBI chr17:85,662,736...85,688,254
Ensembl chr17:85,684,277...85,688,274
JBrowse link
mesenchymal cell differentiation involved in lung development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within IGI (MGI:3688953|PMID:16989802) MGI PMID:16989802 MGI:3688953 NCBI chr13:118,714,699...118,792,573
Ensembl chr13:118,669,791...118,792,115
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within IGI (MGI:3688953|PMID:16989802) MGI PMID:16989802 MGI:3688953 NCBI chr 7:130,162,451...130,266,808
Ensembl chr 7:130,162,451...133,123,350
JBrowse link
mesenchymal cell differentiation involved in renal system development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 involved_in IMP (MGI:3710018|PMID:17442697) UniProt PMID:17442697 MGI:3710018 NCBI chr14:46,383,525...46,390,669
Ensembl chr14:46,383,520...46,390,669
JBrowse link
mesenchymal cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chrd chordin involved_in IDA (MGI:2178923|PMID:11969257) MGI PMID:11969257 MGI:2178923 NCBI chr16:20,731,425...20,742,384
Ensembl chr16:20,733,127...20,742,384
JBrowse link
mesodermal to mesenchymal transition involved in gastrulation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eomes eomesodermin involved_in IMP (MGI:3772748|PMID:18171685) UniProt PMID:18171685 MGI:3772748 NCBI chr 9:118,478,186...118,486,132
Ensembl chr 9:118,478,212...118,486,132
JBrowse link
G Tasor transcription activation suppressor involved_in IMP (MGI:6109647|PMID:28839193) UniProt PMID:28839193 MGI:6109647 NCBI chr14:27,423,674...27,483,555
Ensembl chr14:27,428,834...27,483,555
JBrowse link
G Wnt5a wingless-type MMTV integration site family, member 5A acts_upstream_of_or_within IGI (MGI:5634837|PMID:25813538) MGI PMID:25813538 MGI:5634837 NCBI chr14:28,504,543...28,527,448
Ensembl chr14:28,504,750...28,527,448
JBrowse link
metanephric mesenchymal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Osr1 odd-skipped related transcription factor 1 involved_in IMP (MGI:3697513|PMID:16790474) UniProt PMID:16790474 MGI:3697513 NCBI chr12:9,574,442...9,581,500
Ensembl chr12:9,570,116...9,581,500
JBrowse link
G Pax2 paired box 2 involved_in IMP (MGI:3663200|PMID:16368682) UniProt PMID:16368682 MGI:3663200 NCBI chr19:44,746,601...44,838,269
Ensembl chr19:44,756,045...44,837,871
JBrowse link
G Tcf21 transcription factor 21 involved_in IMP (MGI:2651771|PMID:12619136) UniProt PMID:12619136 MGI:2651771 NCBI chr10:22,817,263...22,820,143
Ensembl chr10:22,817,281...22,820,174
JBrowse link
G Wnt4 wingless-type MMTV integration site family, member 4 involved_in NAS (MGI:3663200|PMID:16368682) UniProt PMID:16368682 MGI:3663200 NCBI chr 4:137,277,635...137,299,501
Ensembl chr 4:137,277,489...137,299,726
JBrowse link
negative regulation of epithelial to mesenchymal transition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adipor1 adiponectin receptor 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 1:134,415,378...134,433,351
Ensembl chr 1:134,415,378...134,433,351
JBrowse link
G Dab2ip disabled 2 interacting protein involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 2:35,558,446...35,730,994
Ensembl chr 2:35,558,266...35,730,994
JBrowse link
G Dact3 dishevelled-binding antagonist of beta-catenin 3 acts_upstream_of_or_within IMP (MGI:5503293|PMID:23580654) MGI PMID:23580654 MGI:5503293 NCBI chr 7:16,875,317...16,887,301
Ensembl chr 7:16,875,317...16,887,462
JBrowse link
G Efna1 ephrin A1 involved_in IMP (MGI:4847981|PMID:20960543) BHF-UCL PMID:20960543 MGI:4847981 NCBI chr 3:89,271,730...89,280,951
Ensembl chr 3:89,271,733...89,281,142
JBrowse link
G Epha4 Eph receptor A4 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 1:77,367,182...77,515,107
Ensembl chr 1:77,367,185...77,515,088
JBrowse link
G Foxa1 forkhead box A1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr12:57,540,628...57,548,029
Ensembl chr12:57,540,628...57,546,916
JBrowse link
G Foxa2 forkhead box A2 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 2:148,042,877...148,046,969
Ensembl chr 2:148,042,877...148,046,969
JBrowse link
G Gata3 GATA binding protein 3 acts_upstream_of ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 2:9,857,078...9,887,953
Ensembl chr 2:9,857,078...9,890,034
JBrowse link
G Hpn hepsin involved_in IBA
ISO
(MGI:6201960|PMID:21873635) GO_Central
MGI
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr 7:31,098,725...31,115,326
Ensembl chr 7:31,098,725...31,115,290
JBrowse link
G Il17rd interleukin 17 receptor D involved_in IDA (MGI:6414689|PMID:25576668) UniProt PMID:25576668 MGI:6414689 NCBI chr14:27,038,964...27,107,286
Ensembl chr14:27,038,941...27,107,286
JBrowse link
G Ldlrad4 low density lipoprotein receptor class A domain containing 4 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr18:67,932,274...68,260,550
Ensembl chr18:67,933,257...68,268,630
JBrowse link
G Mad2l2 MAD2 mitotic arrest deficient-like 2 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 4:148,130,158...148,145,704
Ensembl chr 4:148,130,384...148,145,699
JBrowse link
G Mark1 MAP/microtubule affinity regulating kinase 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 1:184,896,424...184,999,954
Ensembl chr 1:184,896,789...184,999,570
JBrowse link
G Nkx2-1 NK2 homeobox 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr12:56,531,935...56,536,908
Ensembl chr12:56,531,958...56,536,908
JBrowse link
G Ovol2 ovo like zinc finger 2 involved_in IDA
IMP
(MGI:6284898|PMID:28455959)
(MGI:5574425|PMID:24735879)
ARUK-UCL
UniProt
PMID:24735879 PMID:28455959 MGI:5574425 MGI:6284898 NCBI chr 2:144,305,175...144,332,080
Ensembl chr 2:144,305,175...144,332,146
JBrowse link
G Pawr PRKC, apoptosis, WT1, regulator involved_in NAS (MGI:5648604|PMID:25472717) BHF-UCL PMID:25472717 MGI:5648604 NCBI chr10:108,332,189...108,414,391
Ensembl chr10:108,332,121...108,414,240
JBrowse link
G Ppp2ca protein phosphatase 2 (formerly 2A), catalytic subunit, alpha isoform involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr11:52,098,824...52,122,749
Ensembl chr11:52,098,681...52,127,778
JBrowse link
G Pten phosphatase and tensin homolog involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr19:32,757,577...32,826,160
Ensembl chr19:32,757,497...32,826,160
JBrowse link
G Sdhaf2 succinate dehydrogenase complex assembly factor 2 acts_upstream_of_or_within IMP
ISO
(MGI:5529200|PMID:23983127) MGI PMID:23983127 GO_REF:0000008 MGI:2154458 MGI:5529200 NCBI chr19:10,500,512...10,525,209
Ensembl chr19:10,500,534...10,526,142
JBrowse link
G Sfrp1 secreted frizzled-related protein 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 8:23,411,383...23,449,632
Ensembl chr 8:23,411,502...23,449,632
JBrowse link
G Sfrp2 secreted frizzled-related protein 2 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 3:83,765,750...83,774,314
Ensembl chr 3:83,766,321...83,774,316
JBrowse link
G Spred1 sprouty protein with EVH-1 domain 1, related sequence involved_in IDA (MGI:6414689|PMID:25576668) UniProt PMID:25576668 MGI:6414689 NCBI chr 2:117,121,071...117,182,279
Ensembl chr 2:117,121,374...117,182,279
JBrowse link
G Spred2 sprouty-related EVH1 domain containing 2 involved_in IDA (MGI:6414689|PMID:25576668) UniProt PMID:25576668 MGI:6414689 NCBI chr11:19,924,442...20,024,026
Ensembl chr11:19,924,375...20,024,026
JBrowse link
G Spred3 sprouty-related EVH1 domain containing 3 involved_in IDA (MGI:6414689|PMID:25576668) UniProt PMID:25576668 MGI:6414689 NCBI chr 7:29,157,783...29,170,070
Ensembl chr 7:29,158,829...29,170,411
JBrowse link
G Spry1 sprouty RTK signaling antagonist 1 involved_in IDA (MGI:6414689|PMID:25576668) UniProt PMID:25576668 MGI:6414689 NCBI chr 3:37,639,947...37,644,599
Ensembl chr 3:37,639,947...37,644,598
JBrowse link
G Spry2 sprouty RTK signaling antagonist 2 involved_in IDA (MGI:6414689|PMID:25576668) UniProt PMID:25576668 MGI:6414689 NCBI chr14:105,891,947...105,896,819
Ensembl chr14:105,891,947...105,896,819
JBrowse link
G Tgfbr3 transforming growth factor, beta receptor III acts_upstream_of_or_within IMP (MGI:3762085|PMID:17823118) MGI PMID:17823118 MGI:3762085 NCBI chr 5:107,106,567...107,289,629
Ensembl chr 5:107,106,570...107,289,629
JBrowse link
G Trim62 tripartite motif-containing 62 acts_upstream_of_or_within IMP (MGI:5585203|PMID:24890125) MGI PMID:24890125 MGI:5585203 NCBI chr 4:128,884,044...128,911,326
Ensembl chr 4:128,883,580...128,911,328
JBrowse link
G Tsc2 TSC complex subunit 2 involved_in ISO RGD
MGI
PMID:20813961 GO_REF:0000096 MGI:4417868 RGD:11568680 NCBI chr17:24,595,816...24,632,676
Ensembl chr17:24,595,816...24,632,630
JBrowse link
G Usf3 upstream transcription factor family member 3 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr16:44,173,236...44,227,465
Ensembl chr16:44,173,246...44,227,465
JBrowse link
G Vasn vasorin involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr16:4,639,945...4,651,166
Ensembl chr16:4,639,941...4,650,802
JBrowse link
G Vegfa vascular endothelial growth factor A involved_in IMP (MGI:5502250|PMID:23863481) BHF-UCL PMID:23863481 MGI:5502250 NCBI chr17:46,016,993...46,032,377
Ensembl chr17:46,016,993...46,032,369
JBrowse link
G Zfp750 zinc finger protein 750 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr11:121,510,976...121,519,342
Ensembl chr11:121,510,978...121,519,333
JBrowse link
negative regulation of epithelial to mesenchymal transition involved in endocardial cushion formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nog noggin involved_in IMP (MGI:3783944|PMID:17218603) BHF-UCL PMID:17218603 MGI:3783944 NCBI chr11:89,300,638...89,302,559
Ensembl chr11:89,300,638...89,302,332
JBrowse link
G Tgfb2 transforming growth factor, beta 2 involved_in IMP (MGI:3830400|PMID:19161227) BHF-UCL PMID:19161227 MGI:3830400 NCBI chr 1:186,622,787...186,709,697
Ensembl chr 1:186,622,792...186,705,989
JBrowse link
negative regulation of neural crest formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fuz fuzzy planar cell polarity protein involved_in IMP (MGI:5498583|PMID:23806618) UniProt PMID:23806618 MGI:5498583 NCBI chr 7:44,894,305...44,900,624
Ensembl chr 7:44,896,079...44,902,631
JBrowse link
neural crest cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a2 aldehyde dehydrogenase family 1, subfamily A2 acts_upstream_of_or_within IMP
IGI
(MGI:3612223|PMID:16368932)
(MGI:3703483|PMID:17067568)
MGI PMID:16368932 PMID:17067568 MGI:3612223 MGI:3703483 NCBI chr 9:71,215,789...71,296,243
Ensembl chr 9:71,215,789...71,296,243
JBrowse link
G Bmpr1a bone morphogenetic protein receptor, type 1A acts_upstream_of_or_within IMP (MGI:4366654|PMID:19793887) MGI PMID:19793887 MGI:4366654 NCBI chr14:34,411,061...34,503,336
Ensembl chr14:34,410,734...34,503,341
JBrowse link
G Cdh2 cadherin 2 involved_in IMP (MGI:6216737|PMID:26750727) UniProt PMID:26750727 MGI:6216737 NCBI chr18:16,588,877...16,809,246
Ensembl chr18:16,588,877...16,809,246
JBrowse link
G Cyp26a1 cytochrome P450, family 26, subfamily a, polypeptide 1 acts_upstream_of_or_within IGI (MGI:3703483|PMID:17067568) MGI PMID:17067568 MGI:3703483 NCBI chr19:37,697,738...37,701,536
Ensembl chr19:37,697,798...37,701,536
JBrowse link
G Cyp26c1 cytochrome P450, family 26, subfamily c, polypeptide 1 acts_upstream_of_or_within IGI (MGI:3703483|PMID:17067568) MGI PMID:17067568 MGI:3703483 NCBI chr19:37,685,112...37,693,320
Ensembl chr19:37,685,581...37,693,398
JBrowse link
G Edn1 endothelin 1 acts_upstream_of_or_within IMP (MGI:1277800|PMID:9671575), (MGI:3510064|PMID:15327783) MGI PMID:9671575 PMID:15327783 MGI:1277800 MGI:3510064 NCBI chr13:42,301,476...42,307,990
Ensembl chr13:42,301,476...42,307,990
JBrowse link
G Ednra endothelin receptor type A acts_upstream_of_or_within IMP (MGI:3510064|PMID:15327783)
(MGI:1201717|PMID:9449664), (MGI:3056210|PMID:15306564)
MGI PMID:9449664 PMID:15306564 PMID:15327783 MGI:1201717 MGI:3056210 MGI:3510064 NCBI chr 8:77,663,029...77,724,452
Ensembl chr 8:77,663,031...77,724,464
JBrowse link
G Fam172a family with sequence similarity 172, member A involved_in IMP (MGI:6113784|PMID:29311329) UniProt PMID:29311329 MGI:6113784 NCBI chr13:77,708,677...78,166,240
Ensembl chr13:77,702,033...78,166,235
JBrowse link
G Foxc1 forkhead box C1 acts_upstream_of_or_within IGI (MGI:3701735|PMID:16839542) MGI PMID:16839542 MGI:3701735 NCBI chr13:31,806,646...31,810,635
Ensembl chr13:31,806,633...31,812,476
JBrowse link
G Foxc2 forkhead box C2 acts_upstream_of_or_within IGI (MGI:3701735|PMID:16839542) MGI PMID:16839542 MGI:3701735 NCBI chr 8:121,116,171...121,118,895
Ensembl chr 8:121,116,171...121,118,895
JBrowse link
G Hand2 heart and neural crest derivatives expressed 2 acts_upstream_of_or_within IMP (MGI:1277800|PMID:9671575) MGI PMID:9671575 MGI:1277800 NCBI chr 8:57,320,983...57,324,517
Ensembl chr 8:57,320,983...57,324,633
JBrowse link
G Kbtbd8 kelch repeat and BTB (POZ) domain containing 8 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 6:95,117,880...95,129,793
Ensembl chr 6:95,117,240...95,129,790
JBrowse link
G Klhl12 kelch-like 12 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 1:134,455,495...134,490,880
Ensembl chr 1:134,455,531...134,491,018
JBrowse link
G Mapk1 mitogen-activated protein kinase 1 acts_upstream_of_or_within IGI (MGI:3832113|PMID:18952847) MGI PMID:18952847 MGI:3832113 NCBI chr16:16,983,382...17,047,453
Ensembl chr16:16,983,382...17,047,453
JBrowse link
G Mapk3 mitogen-activated protein kinase 3 acts_upstream_of_or_within IGI (MGI:3832113|PMID:18952847) MGI PMID:18952847 MGI:3832113 NCBI chr 7:126,759,626...126,765,816
Ensembl chr 7:126,759,601...126,765,819
JBrowse link
G Nolc1 nucleolar and coiled-body phosphoprotein 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr19:46,075,847...46,085,543
Ensembl chr19:46,075,863...46,085,530
JBrowse link
G Pdcd6 programmed cell death 6 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr13:74,303,121...74,317,326
Ensembl chr13:74,303,509...74,317,580
JBrowse link
G Pef1 penta-EF hand domain containing 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 4:130,107,556...130,128,134
Ensembl chr 4:130,102,558...130,128,135
JBrowse link
G Rdh10 retinol dehydrogenase 10 (all-trans) acts_upstream_of_or_within IMP (MGI:3709664|PMID:17473173) MGI PMID:17473173 MGI:3709664 NCBI chr 1:16,105,882...16,132,550
Ensembl chr 1:16,105,774...16,133,734
JBrowse link
G Snai2 snail family zinc finger 2 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr16:14,705,852...14,709,395
Ensembl chr16:14,705,852...14,709,385
JBrowse link
G Sox11 SRY (sex determining region Y)-box 11 involved_in IMP (MGI:5285157|PMID:20596238) UniProt PMID:20596238 MGI:5285157 NCBI chr12:27,334,268...27,342,718
Ensembl chr12:27,334,264...27,342,574
JBrowse link
G Sox8 SRY (sex determining region Y)-box 8 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr17:25,565,893...25,570,686
Ensembl chr17:25,565,892...25,570,686
JBrowse link
G Sox9 SRY (sex determining region Y)-box 9 acts_upstream_of_or_within IMP (MGI:3613316|PMID:15691760) MGI PMID:15691760 MGI:3613316 NCBI chr11:112,782,210...112,787,757
Ensembl chr11:112,782,224...112,787,760
JBrowse link
G Tcof1 treacle ribosome biogenesis factor 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr18:60,813,738...60,848,983
Ensembl chr18:60,813,755...60,848,971
JBrowse link
G Tfap2a transcription factor AP-2, alpha acts_upstream_of_or_within IMP (MGI:80519|PMID:8622766) MGI PMID:8622766 MGI:80519 NCBI chr13:40,713,802...40,738,238
Ensembl chr13:40,715,302...40,738,376
JBrowse link
neural crest cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Edn1 endothelin 1 involved_in IMP (MGI:5532613|PMID:23933587) MGI PMID:23933587 MGI:5532613 NCBI chr13:42,301,476...42,307,990
Ensembl chr13:42,301,476...42,307,990
JBrowse link
G Ednra endothelin receptor type A involved_in IGI
IMP
(MGI:5903136|PMID:28455376)
(MGI:5532613|PMID:23933587)
(MGI:3847842|PMID:19185569)
MGI PMID:19185569 PMID:23933587 PMID:28455376 MGI:3847842 MGI:5532613 MGI:5903136 NCBI chr 8:77,663,029...77,724,452
Ensembl chr 8:77,663,031...77,724,464
JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within IMP (MGI:5907444|PMID:26295701) MGI PMID:26295701 MGI:5907444 NCBI chr15:53,068,261...53,346,183
Ensembl chr15:53,064,038...53,346,159
JBrowse link
G Frzb frizzled-related protein acts_upstream_of_or_within IEP (PMID:10654605) BHF-UCL PMID:10654605 NCBI chr 2:80,411,970...80,447,396
Ensembl chr 2:80,411,970...80,447,625
JBrowse link
G Htr2b 5-hydroxytryptamine (serotonin) receptor 2B involved_in IMP (MGI:707955|PMID:9165122) UniProt PMID:9165122 MGI:707955 NCBI chr 1:86,097,546...86,116,231
Ensembl chr 1:86,099,026...86,111,970
JBrowse link
G Lrp6 low density lipoprotein receptor-related protein 6 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 6:134,446,476...134,566,913
Ensembl chr 6:134,446,476...134,566,965
JBrowse link
G Mef2c myocyte enhancer factor 2C involved_in IMP (MGI:5049797|PMID:21610032) UniProt PMID:21610032 MGI:5049797 NCBI chr13:83,504,017...83,667,079
Ensembl chr13:83,504,034...83,667,080
JBrowse link
G Otud5 OTU domain containing 5 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr  X:7,839,613...7,876,626
Ensembl chr  X:7,841,364...7,876,626
JBrowse link
G Six1 sine oculis-related homeobox 1 involved_in IGI (MGI:5903136|PMID:28455376) MGI PMID:28455376 MGI:5903136 NCBI chr12:73,041,827...73,046,712
Ensembl chr12:73,040,015...73,053,887
JBrowse link
G Smad4 SMAD family member 4 acts_upstream_of_or_within IMP (MGI:4366654|PMID:19793887) MGI PMID:19793887 MGI:4366654 NCBI chr18:73,634,790...73,703,791
Ensembl chr18:73,639,009...73,703,780
JBrowse link
G Wnt10a wingless-type MMTV integration site family, member 10A acts_upstream_of_or_within IDA (MGI:3712614|PMID:17286598) MGI PMID:17286598 MGI:3712614 NCBI chr 1:74,792,019...74,804,176
Ensembl chr 1:74,791,516...74,804,179
JBrowse link
neural crest cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Edn1 endothelin 1 involved_in IMP (MGI:5532613|PMID:23933587) MGI PMID:23933587 MGI:5532613 NCBI chr13:42,301,476...42,307,990
Ensembl chr13:42,301,476...42,307,990
JBrowse link
G Ednra endothelin receptor type A involved_in IMP (MGI:3700083|PMID:17294360)
(MGI:5532613|PMID:23933587)
MGI PMID:17294360 PMID:23933587 MGI:3700083 MGI:5532613 NCBI chr 8:77,663,029...77,724,452
Ensembl chr 8:77,663,031...77,724,464
JBrowse link
G Sfrp1 secreted frizzled-related protein 1 acts_upstream_of_or_within IMP (MGI:4437369|PMID:20130188) MGI PMID:20130188 MGI:4437369 NCBI chr 8:23,411,383...23,449,632
Ensembl chr 8:23,411,502...23,449,632
JBrowse link
neural crest cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gsc goosecoid homeobox involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr12:104,471,209...104,473,236
Ensembl chr12:104,471,209...104,473,330
JBrowse link
neural crest cell migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1 activin A receptor, type 1 acts_upstream_of_or_within IMP (MGI:3045641|PMID:15226263) MGI PMID:15226263 MGI:3045641 NCBI chr 2:58,446,438...58,566,828
Ensembl chr 2:58,388,644...58,567,157
JBrowse link
G Alx1 ALX homeobox 1 involved_in IEA UniProt GO_REF:0000002 MGI:2152098 NCBI chr10:103,007,847...103,029,549
Ensembl chr10:102,998,707...103,030,215
JBrowse link
G Anxa6 annexin A6 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr11:54,978,953...55,033,471
Ensembl chr11:54,979,108...55,033,445
JBrowse link
G Cfl1 cofilin 1, non-muscle acts_upstream_of_or_within IMP (MGI:3530675|PMID:15649475) MGI PMID:15649475 MGI:3530675 NCBI chr19:5,490,455...5,494,031
Ensembl chr19:5,490,455...5,495,201
JBrowse link
G Coro1c coronin, actin binding protein 1C involved_in ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr 5:113,842,439...113,908,706
Ensembl chr 5:113,842,436...113,908,758
JBrowse link
G Edn3 endothelin 3 acts_upstream_of_or_within IMP (MGI:1267304|PMID:9624616) MGI PMID:9624616 MGI:1267304 NCBI chr 2:174,760,619...174,784,042
Ensembl chr 2:174,760,619...174,784,042
JBrowse link
G Ednrb endothelin receptor type B acts_upstream_of_or_within IMP (MGI:1349495|PMID:10591209) MGI PMID:10591209 MGI:1349495 NCBI chr14:103,814,615...103,844,508
Ensembl chr14:103,814,625...103,844,402
JBrowse link
G Efnb1 ephrin B1 acts_upstream_of_or_within IMP (MGI:3037600|PMID:15037550) MGI PMID:15037550 MGI:3037600 NCBI chr  X:99,136,061...99,149,022
Ensembl chr  X:99,136,130...99,148,991
JBrowse link
G Erbb4 erb-b2 receptor tyrosine kinase 4 involved_in IMP (MGI:1352955|PMID:10655590) UniProt PMID:10655590 MGI:1352955 NCBI chr 1:68,031,884...69,108,576
Ensembl chr 1:68,032,186...69,108,059
JBrowse link
G Fgf15 fibroblast growth factor 15 acts_upstream_of_or_within IMP (MGI:3575218|PMID:15789410) MGI PMID:15789410 MGI:3575218 NCBI chr 7:144,896,532...144,900,953
Ensembl chr 7:144,896,531...144,900,953
JBrowse link
G Gbx2 gastrulation brain homeobox 2 acts_upstream_of_or_within IMP (MGI:3588904|PMID:15996652), (MGI:4358009|PMID:19700621)
(MGI:5478665|PMID:23144817)
MGI PMID:15996652 PMID:19700621 PMID:23144817 MGI:3588904 MGI:4358009 MGI:5478665 NCBI chr 1:89,927,962...89,931,176
Ensembl chr 1:89,927,956...89,931,179
JBrowse link
G Gdnf glial cell line derived neurotrophic factor acts_upstream_of_or_within ISO MGI GO_REF:0000008 MGI:2154458 NCBI chr15:7,810,048...7,837,580
Ensembl chr15:7,810,846...7,837,575
JBrowse link
G Hif1a hypoxia inducible factor 1, alpha subunit acts_upstream_of_or_within IMP (MGI:3607736|PMID:14659802) MGI PMID:14659802 MGI:3607736 NCBI chr12:73,901,324...73,947,554
Ensembl chr12:73,901,375...73,947,530
JBrowse link
G Htr2b 5-hydroxytryptamine (serotonin) receptor 2B involved_in IMP (MGI:707955|PMID:9165122) UniProt PMID:9165122 MGI:707955 NCBI chr 1:86,097,546...86,116,231
Ensembl chr 1:86,099,026...86,111,970
JBrowse link
G Isl1 ISL1 transcription factor, LIM/homeodomain acts_upstream_of_or_within IGI (MGI:3640718|PMID:16687132) MGI PMID:16687132 MGI:3640718 NCBI chr13:116,298,270...116,309,688
Ensembl chr13:116,298,281...116,309,689
JBrowse link
G Kitl kit ligand acts_upstream_of_or_within IDA (MGI:1934508|PMID:11401406) MGI PMID:11401406 MGI:1934508 NCBI chr10:100,015,615...100,100,416
Ensembl chr10:100,015,630...100,100,416
JBrowse link
G Lama5 laminin, alpha 5 acts_upstream_of_or_within IMP (MGI:3611396|PMID:16316641) MGI PMID:16316641 MGI:3611396 NCBI chr 2:180,176,373...180,225,904
Ensembl chr 2:180,176,373...180,225,859
JBrowse link
G Nrp2 neuropilin 2 acts_upstream_of_or_within IMP (MGI:3613099|PMID:16319111) MGI PMID:16319111 MGI:3613099 NCBI chr 1:62,703,317...62,818,692
Ensembl chr 1:62,703,285...62,818,695
JBrowse link
G Nrtn neurturin acts_upstream_of_or_within ISO MGI GO_REF:0000008 MGI:2154458 NCBI chr17:56,751,323...56,757,548
Ensembl chr17:56,751,325...56,757,530
JBrowse link
G Ovol2 ovo like zinc finger 2 acts_upstream_of_or_within IMP (MGI:3618450|PMID:16423343) MGI PMID:16423343 MGI:3618450 NCBI chr 2:144,305,175...144,332,080
Ensembl chr 2:144,305,175...144,332,146
JBrowse link
G Pax3 paired box 3 acts_upstream_of_or_within IMP (MGI:3056222|PMID:15384171) MGI PMID:15384171 MGI:3056222 NCBI chr 1:78,101,267...78,197,136
Ensembl chr 1:78,101,267...78,197,134
JBrowse link
G Pax6 paired box 6 involved_in ISO RGD
MGI
PMID:9079035 GO_REF:0000096 MGI:4417868 RGD:8552342 NCBI chr 2:105,668,896...105,698,410
Ensembl chr 2:105,668,900...105,697,364
JBrowse link
G Phactr4 phosphatase and actin regulator 4 involved_in IMP
IBA
(MGI:5302129|PMID:22215812)
(MGI:6201960|PMID:21873635)
UniProt
GO_Central
PMID:21873635 PMID:22215812 MGI:5302129 MGI:6201960 NCBI chr 4:132,355,922...132,422,446
Ensembl chr 4:132,355,923...132,422,489
JBrowse link
G Radil Ras association and DIL domains involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 5:142,483,795...142,551,098
Ensembl chr 5:142,484,839...142,551,098
JBrowse link
G Ret ret proto-oncogene acts_upstream_of_or_within IMP (MGI:3617928|PMID:15242795) MGI PMID:15242795 MGI:3617928 NCBI chr 6:118,151,748...118,197,744
Ensembl chr 6:118,151,745...118,197,718
JBrowse link
G Sema3a sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 5:13,124,822...13,603,485
Ensembl chr 5:13,125,414...13,602,565
JBrowse link
G Sema3b sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3B involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 9:107,597,674...107,609,241
Ensembl chr 9:107,597,674...107,609,229
JBrowse link
G Sema3c sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C involved_in
acts_upstream_of_or_within
IBA
IMP
(MGI:6201960|PMID:21873635)
(MGI:2149435|PMID:11688556)
GO_Central
MGI
PMID:11688556 PMID:21873635 MGI:2149435 MGI:6201960 NCBI chr 5:17,574,816...17,730,268
Ensembl chr 5:17,574,281...17,730,268
JBrowse link
G Sema3d sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 5:12,383,161...12,588,953
Ensembl chr 5:12,383,385...12,588,948
JBrowse link
G Sema3e sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 5:14,025,276...14,256,689
Ensembl chr 5:14,025,276...14,256,689
JBrowse link
G Sema3f sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F involved_in
acts_upstream_of_or_within
IBA
IMP
(MGI:6201960|PMID:21873635)
(MGI:3613099|PMID:16319111)
GO_Central
MGI
PMID:16319111 PMID:21873635 MGI:3613099 MGI:6201960 NCBI chr 9:107,681,499...107,710,475
Ensembl chr 9:107,681,500...107,710,475
JBrowse link
G Sema3g sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr14:31,217,873...31,230,352
Ensembl chr14:31,217,860...31,230,352
JBrowse link
G Sema4a sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4A involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 3:88,435,959...88,461,182
Ensembl chr 3:88,435,959...88,461,182
JBrowse link
G Sema4b sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 7:80,186,870...80,226,646
Ensembl chr 7:80,186,841...80,226,527
JBrowse link
G Sema4c sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 1:36,548,639...36,560,699
Ensembl chr 1:36,548,639...36,558,349
JBrowse link
G Sema4d sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr13:51,685,529...51,793,678
Ensembl chr13:51,685,529...51,793,747
JBrowse link
G Sema4f sema domain, immunoglobulin domain (Ig), TM domain, and short cytoplasmic domain involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 6:82,911,884...82,939,769
Ensembl chr 6:82,911,885...82,939,769
JBrowse link
G Sema4g sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr19:44,988,743...45,003,397
Ensembl chr19:44,989,101...45,003,397
JBrowse link
G Sema5a sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr15:32,244,813...32,696,341
Ensembl chr15:32,244,810...32,696,341
JBrowse link
G Sema5b sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr16:35,541,154...35,664,261
Ensembl chr16:35,541,145...35,664,732
JBrowse link
G Sema6a sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6A involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr18:47,245,254...47,371,200
Ensembl chr18:47,235,598...47,368,870
JBrowse link
G Sema6b sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6B involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr17:56,123,085...56,140,343
Ensembl chr17:56,123,085...56,140,343
JBrowse link
G Sema6c sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 3:95,160,420...95,174,050
Ensembl chr 3:95,160,457...95,174,024
JBrowse link
G Sema6d sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 2:124,089,943...124,667,789
Ensembl chr 2:124,089,969...124,667,770
JBrowse link
G Sema7a sema domain, immunoglobulin domain (Ig), and GPI membrane anchor, (semaphorin) 7A involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 9:57,939,596...57,962,865
Ensembl chr 9:57,940,112...57,962,865
JBrowse link
G Shh sonic hedgehog acts_upstream_of_or_within IMP (MGI:3583396|PMID:15936751) MGI PMID:15936751 MGI:3583396 NCBI chr 5:28,456,840...28,467,101
Ensembl chr 5:28,456,815...28,467,256
JBrowse link
G Smo smoothened, frizzled class receptor acts_upstream_of_or_within IGI (MGI:3640718|PMID:16687132) MGI PMID:16687132 MGI:3640718 NCBI chr 6:29,735,497...29,761,366
Ensembl chr 6:29,735,503...29,761,365
JBrowse link
G Sox10 SRY (sex determining region Y)-box 10 involved_in IMP
IBA
(MGI:3527299|PMID:15572147)
(MGI:6201960|PMID:21873635)
UniProt
GO_Central
PMID:15572147 PMID:21873635 MGI:3527299 MGI:6201960 NCBI chr15:79,154,913...79,164,490
Ensembl chr15:79,154,908...79,165,240
JBrowse link
G Sox8 SRY (sex determining region Y)-box 8 involved_in IMP (MGI:3527299|PMID:15572147) UniProt PMID:15572147 MGI:3527299 NCBI chr17:25,565,893...25,570,686
Ensembl chr17:25,565,892...25,570,686
JBrowse link
G Tbx1 T-box 1 acts_upstream_of_or_within IMP (MGI:3530686|PMID:15652707)
(MGI:4822099|PMID:20501333)
MGI PMID:15652707 PMID:20501333 MGI:3530686 MGI:4822099 NCBI chr16:18,580,979...18,590,671
Ensembl chr16:18,580,979...18,590,671
JBrowse link
G Zeb2 zinc finger E-box binding homeobox 2 acts_upstream_of_or_within IMP (MGI:2450818|PMID:12522767) MGI PMID:12522767 MGI:2450818 NCBI chr 2:44,983,512...45,117,442
Ensembl chr 2:44,983,632...45,117,395
JBrowse link
neural crest cell migration involved in autonomic nervous system development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fn1 fibronectin 1 involved_in ISO (MGI:5754659|PMID:26571399) MGI PMID:26571399 MGI:5754659 NCBI chr 1:71,585,473...71,653,280
Ensembl chr 1:71,585,520...71,653,200
JBrowse link
G Gdnf glial cell line derived neurotrophic factor involved_in ISO MGI GO_REF:0000008 MGI:2154458 NCBI chr15:7,810,048...7,837,580
Ensembl chr15:7,810,846...7,837,575
JBrowse link
G Nrp1 neuropilin 1 involved_in IMP (MGI:3788968|PMID:18356247), (MGI:3848580|PMID:19386662), (MGI:5567908|PMID:19325129) ParkinsonsUK-UCL PMID:18356247 PMID:19325129 PMID:19386662 MGI:3788968 MGI:3848580 MGI:5567908 NCBI chr 8:128,358,591...128,505,476
Ensembl chr 8:128,358,604...128,503,363
JBrowse link
G Nrp2 neuropilin 2 involved_in IMP (MGI:3788968|PMID:18356247), (MGI:3848580|PMID:19386662) ParkinsonsUK-UCL PMID:18356247 PMID:19386662 MGI:3788968 MGI:3848580 NCBI chr 1:62,703,317...62,818,692
Ensembl chr 1:62,703,285...62,818,695
JBrowse link
G Phox2b paired-like homeobox 2b involved_in IMP (MGI:1337891|PMID:10360575) BHF-UCL PMID:10360575 MGI:1337891 NCBI chr 5:67,094,397...67,099,126
Ensembl chr 5:67,094,399...67,099,301
JBrowse link
G Sema3a sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A involved_in IMP (MGI:3788968|PMID:18356247), (MGI:3848580|PMID:19386662), (MGI:5567908|PMID:19325129) ParkinsonsUK-UCL PMID:18356247 PMID:19325129 PMID:19386662 MGI:3788968 MGI:3848580 MGI:5567908 NCBI chr 5:13,124,822...13,603,485
Ensembl chr 5:13,125,414...13,602,565
JBrowse link
G Sema3f sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F involved_in IMP (MGI:3848580|PMID:19386662) ParkinsonsUK-UCL PMID:19386662 MGI:3848580 NCBI chr 9:107,681,499...107,710,475
Ensembl chr 9:107,681,500...107,710,475
JBrowse link
neural crest cell migration involved in heart formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Folr1 folate receptor 1 (adult) involved_in IMP (MGI:3721767|PMID:17286298) BHF-UCL PMID:17286298 MGI:3721767 NCBI chr 7:101,858,331...101,870,788
Ensembl chr 7:101,858,331...101,870,788
JBrowse link
neural crest cell migration involved in sympathetic nervous system development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sema3a sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A involved_in IMP (MGI:5567908|PMID:19325129) BHF-UCL PMID:19325129 MGI:5567908 NCBI chr 5:13,124,822...13,603,485
Ensembl chr 5:13,125,414...13,602,565
JBrowse link
neural crest formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chrd chordin involved_in IMP (MGI:3721005|PMID:17685487) MGI PMID:17685487 MGI:3721005 NCBI chr16:20,731,425...20,742,384
Ensembl chr16:20,733,127...20,742,384
JBrowse link
G Kbtbd8 kelch repeat and BTB (POZ) domain containing 8 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 6:95,117,880...95,129,793
Ensembl chr 6:95,117,240...95,129,790
JBrowse link
G Klhl12 kelch-like 12 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 1:134,455,495...134,490,880
Ensembl chr 1:134,455,531...134,491,018
JBrowse link
G Lrp6 low density lipoprotein receptor-related protein 6 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 6:134,446,476...134,566,913
Ensembl chr 6:134,446,476...134,566,965
JBrowse link
G Nolc1 nucleolar and coiled-body phosphoprotein 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr19:46,075,847...46,085,543
Ensembl chr19:46,075,863...46,085,530
JBrowse link
G Pdcd6 programmed cell death 6 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr13:74,303,121...74,317,326
Ensembl chr13:74,303,509...74,317,580
JBrowse link
G Pef1 penta-EF hand domain containing 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 4:130,107,556...130,128,134
Ensembl chr 4:130,102,558...130,128,135
JBrowse link
G Tcof1 treacle ribosome biogenesis factor 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr18:60,813,738...60,848,983
Ensembl chr18:60,813,755...60,848,971
JBrowse link
positive regulation of cardiac endothelial to mesenchymal transition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gata5 GATA binding protein 5 involved_in IMP (MGI:5286818|PMID:21633169) BHF-UCL PMID:21633169 MGI:5286818 NCBI chr 2:180,325,088...180,335,503
Ensembl chr 2:180,325,133...180,334,699
JBrowse link
positive regulation of cardiac epithelial to mesenchymal transition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Jag1 jagged 1 involved_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr 2:137,081,451...137,116,520
Ensembl chr 2:137,081,456...137,116,644
JBrowse link
G Notch1 notch 1 involved_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr 2:26,457,902...26,503,822
Ensembl chr 2:26,457,903...26,516,663
JBrowse link
G Tgfb2 transforming growth factor, beta 2 involved_in IMP (MGI:5300829|PMID:22186728) UniProt PMID:22186728 MGI:5300829 NCBI chr 1:186,622,787...186,709,697
Ensembl chr 1:186,622,792...186,705,989
JBrowse link
positive regulation of cardiac neural crest cell migration involved in outflow tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 involved_in IGI (MGI:5502250|PMID:23863481) BHF-UCL PMID:23863481 MGI:5502250 NCBI chr14:46,383,525...46,390,669
Ensembl chr14:46,383,520...46,390,669
JBrowse link
G Bmp7 bone morphogenetic protein 7 involved_in IGI (MGI:5502250|PMID:23863481) BHF-UCL PMID:23863481 MGI:5502250 NCBI chr 2:172,868,012...172,940,321
Ensembl chr 2:172,868,012...172,940,321
JBrowse link
G Sema3c sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C involved_in IDA (MGI:5693177|PMID:26053665) BHF-UCL PMID:26053665 MGI:5693177 NCBI chr 5:17,574,816...17,730,268
Ensembl chr 5:17,574,281...17,730,268
JBrowse link
positive regulation of endocardial cushion to mesenchymal transition involved in heart valve formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Twist1 twist basic helix-loop-helix transcription factor 1 involved_in IDA (MGI:4838344|PMID:20804746) BHF-UCL PMID:20804746 MGI:4838344 NCBI chr12:33,957,671...33,959,831
Ensembl chr12:33,957,671...33,959,829
JBrowse link
positive regulation of epithelial to mesenchymal transition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ager advanced glycosylation end product-specific receptor involved_in ISO RGD
MGI
PMID:21743278 GO_REF:0000096 MGI:4417868 RGD:7243870 NCBI chr17:34,597,460...34,600,937
Ensembl chr17:34,597,862...34,600,936
JBrowse link
G Alx1 ALX homeobox 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr10:103,007,847...103,029,549
Ensembl chr10:102,998,707...103,030,215
JBrowse link
G Axin2 axin 2 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr11:108,917,828...108,950,783
Ensembl chr11:108,920,349...108,950,783
JBrowse link
G Bambi BMP and activin membrane-bound inhibitor involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr18:3,507,011...3,516,404
Ensembl chr18:3,507,923...3,516,404
JBrowse link
G Bcl9l B cell CLL/lymphoma 9-like involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 9:44,482,738...44,511,906
Ensembl chr 9:44,482,825...44,511,896
JBrowse link
G Bmp2 bone morphogenetic protein 2 acts_upstream_of_or_within
involved_in
IMP
ISO
(MGI:3611958|PMID:16314491) MGI PMID:16314491 GO_REF:0000096 MGI:3611958 MGI:4834177 NCBI chr 2:133,552,159...133,562,896
Ensembl chr 2:133,552,159...133,562,885
JBrowse link
G Bmp4 bone morphogenetic protein 4 involved_in IGI (MGI:5502250|PMID:23863481) BHF-UCL PMID:23863481 MGI:5502250 NCBI chr14:46,383,525...46,390,669
Ensembl chr14:46,383,520...46,390,669
JBrowse link
G Bmp7 bone morphogenetic protein 7 involved_in IGI (MGI:5502250|PMID:23863481) BHF-UCL PMID:23863481 MGI:5502250 NCBI chr 2:172,868,012...172,940,321
Ensembl chr 2:172,868,012...172,940,321
JBrowse link
G Col1a1 collagen, type I, alpha 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr11:94,936,224...94,953,042
Ensembl chr11:94,936,224...94,953,042
JBrowse link
G Crb2 crumbs family member 2 involved_in IMP (MGI:5296388|PMID:22072575), (MGI:5823085|PMID:27870829) UniProt PMID:22072575 PMID:27870829 MGI:5296388 MGI:5823085 NCBI chr 2:37,776,225...37,799,103
Ensembl chr 2:37,776,249...37,799,103
JBrowse link
G Ctnnb1 catenin (cadherin associated protein), beta 1 involved_in
acts_upstream_of_or_within
TAS
ISO
(MGI:4943617|PMID:20299672) DFLAT
MGI
PMID:20299672 GO_REF:0000008 MGI:2154458 MGI:4943617 NCBI chr 9:120,933,400...120,960,507
Ensembl chr 9:120,929,216...120,960,507
JBrowse link
G Dab2 disabled 2, mitogen-responsive phosphoprotein involved_in IMP
ISO
(MGI:5442513|PMID:15734730) UniProt
MGI
PMID:15734730 GO_REF:0000096 MGI:4834177 MGI:5442513 NCBI chr15:6,299,788...6,440,715
Ensembl chr15:6,299,788...6,440,712
JBrowse link
G Ezh2 enhancer of zeste 2 polycomb repressive complex 2 subunit involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 6:47,530,274...47,595,270
Ensembl chr 6:47,530,139...47,595,341
JBrowse link
G Fermt2 fermitin family member 2 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr14:45,458,792...45,530,310
Ensembl chr14:45,458,795...45,530,118
JBrowse link
G Foxc1 forkhead box C1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr13:31,806,646...31,810,635
Ensembl chr13:31,806,633...31,812,476
JBrowse link
G Gcnt2 glucosaminyl (N-acetyl) transferase 2, I-branching enzyme involved_in ISO
IMP
(MGI:5545971|PMID:21750175) MGI
UniProt
PMID:21750175 GO_REF:0000096 MGI:4834177 MGI:5545971 NCBI chr13:40,859,768...40,960,892
Ensembl chr13:40,859,754...40,960,892
JBrowse link
G Glipr2 GLI pathogenesis-related 2 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 4:43,957,702...43,979,118
Ensembl chr 4:43,957,401...43,979,118
JBrowse link
G Hdac2 histone deacetylase 2 involved_in ISO RGD
MGI
PMID:19553350 GO_REF:0000096 MGI:4417868 RGD:9590229 NCBI chr10:36,974,297...37,001,889
Ensembl chr10:36,974,544...37,001,889
JBrowse link
G Il1b interleukin 1 beta involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 2:129,364,569...129,371,164
Ensembl chr 2:129,364,570...129,371,139
JBrowse link
G Il6 interleukin 6 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 5:30,013,114...30,019,975
Ensembl chr 5:30,013,114...30,019,981
JBrowse link
G Isl1 ISL1 transcription factor, LIM/homeodomain involved_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr13:116,298,270...116,309,688
Ensembl chr13:116,298,281...116,309,689
JBrowse link
G Lef1 lymphoid enhancer binding factor 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 3:131,110,297...131,224,357
Ensembl chr 3:131,110,471...131,224,356
JBrowse link
G Loxl2 lysyl oxidase-like 2 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr14:69,608,692...69,695,834
Ensembl chr14:69,609,068...69,695,834
JBrowse link
G Mdk midkine involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 2:91,929,805...91,932,297
Ensembl chr 2:91,929,805...91,932,297
JBrowse link
G Mtor mechanistic target of rapamycin kinase involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 4:148,448,582...148,557,685
Ensembl chr 4:148,448,611...148,557,683
JBrowse link
G Myocd myocardin involved_in ISO MGI GO_REF:0000096 MGI:4417868 NCBI chr11:65,173,608...65,269,989
Ensembl chr11:65,176,561...65,269,989
JBrowse link
G Notch1 notch 1 involved_in IMP (MGI:4837019|PMID:20890042) BHF-UCL PMID:20890042 MGI:4837019 NCBI chr 2:26,457,902...26,503,822
Ensembl chr 2:26,457,903...26,516,663
JBrowse link
G Pdpn podoplanin involved_in ISO
IBA
(MGI:6201960|PMID:21873635) MGI
GO_Central
PMID:21873635 GO_REF:0000096 MGI:4834177 MGI:6201960 NCBI chr 4:143,267,409...143,299,564
Ensembl chr 4:143,267,431...143,299,564
JBrowse link
G Rgcc regulator of cell cycle involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr14:79,288,750...79,301,635
Ensembl chr14:79,288,756...79,301,645
JBrowse link
G Sdcbp syndecan binding protein involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 4:6,365,680...6,396,122
Ensembl chr 4:6,365,650...6,408,423
JBrowse link
G Serpinb3d serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 3D involved_in ISO (PMID:20527027) UniProt PMID:20527027 NCBI chr 1:107,078,163...107,083,480
Ensembl chr 1:107,078,167...107,083,506
JBrowse link
G Smad2 SMAD family member 2 involved_in IMP (MGI:2683382|PMID:14691138) BHF-UCL PMID:14691138 MGI:2683382 NCBI chr18:76,241,090...76,311,748
Ensembl chr18:76,241,580...76,310,963
JBrowse link
G Smad3 SMAD family member 3 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 9:63,646,766...63,757,994
Ensembl chr 9:63,646,767...63,757,994
JBrowse link
G Smad4 SMAD family member 4 involved_in IMP (MGI:2683382|PMID:14691138) BHF-UCL PMID:14691138 MGI:2683382 NCBI chr18:73,634,790...73,703,791
Ensembl chr18:73,639,009...73,703,780
JBrowse link
G Snai1 snail family zinc finger 1 involved_in IMP
ISO
(MGI:4837019|PMID:20890042), (MGI:5548026|PMID:24239292) UniProt
MGI
PMID:20890042 PMID:24239292 GO_REF:0000096 MGI:4834177 MGI:4837019 MGI:5548026 NCBI chr 2:167,538,195...167,542,814
Ensembl chr 2:167,538,195...167,542,814
JBrowse link
G Tbx20 T-box 20 involved_in IMP (MGI:5299248|PMID:21983003) BHF-UCL PMID:21983003 MGI:5299248 NCBI chr 9:24,720,812...24,774,303
Ensembl chr 9:24,718,138...24,774,303
JBrowse link
G Tgfb1 transforming growth factor, beta 1 involved_in
acts_upstream_of_or_within
ISO
IDA
(MGI:3821807|PMID:18794329) MGI PMID:18794329 GO_REF:0000096 MGI:3821807 MGI:4834177 NCBI chr 7:25,687,002...25,705,077
Ensembl chr 7:25,687,002...25,705,077
JBrowse link
G Tgfb1i1 transforming growth factor beta 1 induced transcript 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 7:128,246,812...128,255,699
Ensembl chr 7:128,246,812...128,255,699
JBrowse link
G Tgfb2 transforming growth factor, beta 2 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 1:186,622,787...186,709,697
Ensembl chr 1:186,622,792...186,705,989
JBrowse link
G Tgfb3 transforming growth factor, beta 3 involved_in IMP
ISO
(MGI:2683382|PMID:14691138) BHF-UCL
MGI
PMID:14691138 GO_REF:0000096 MGI:2683382 MGI:4834177 NCBI chr12:86,056,743...86,079,041
Ensembl chr12:86,056,745...86,079,041
JBrowse link
G Tgfbr1 transforming growth factor, beta receptor I involved_in IGI (MGI:3820811|PMID:18718461) BHF-UCL PMID:18718461 MGI:3820811 NCBI chr 4:47,353,222...47,414,926
Ensembl chr 4:47,353,222...47,414,931
JBrowse link
G Tgfbr2 transforming growth factor, beta receptor II involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 9:116,087,695...116,175,363
Ensembl chr 9:116,084,293...116,175,360
JBrowse link
G Twist1 twist basic helix-loop-helix transcription factor 1 involved_in ISO
IMP
(MGI:4838344|PMID:20804746), (MGI:5284765|PMID:18297062), (MGI:5284780|PMID:17332324) MGI
BHF-UCL
PMID:17332324 PMID:18297062 PMID:20804746 GO_REF:0000096 MGI:4834177 MGI:4838344 MGI:5284765 MGI:5284780 NCBI chr12:33,957,671...33,959,831
Ensembl chr12:33,957,671...33,959,829
JBrowse link
G Wwtr1 WW domain containing transcription regulator 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 3:57,455,644...57,575,910
Ensembl chr 3:57,455,649...57,575,910
JBrowse link
G Zfp703 zinc finger protein 703 involved_in IDA (MGI:4940410|PMID:21317240) UniProt PMID:21317240 MGI:4940410 NCBI chr 8:26,977,336...26,981,462
Ensembl chr 8:26,977,325...26,981,461
JBrowse link
positive regulation of epithelial to mesenchymal transition involved in endocardial cushion formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1 activin A receptor, type 1 involved_in IMP (MGI:3610266|PMID:16140292) BHF-UCL PMID:16140292 MGI:3610266 NCBI chr 2:58,446,438...58,566,828
Ensembl chr 2:58,388,644...58,567,157
JBrowse link
G Eng endoglin involved_in IMP (MGI:4368063|PMID:19703439) BHF-UCL PMID:19703439 MGI:4368063 NCBI chr 2:32,646,595...32,682,669
Ensembl chr 2:32,646,595...32,682,669
JBrowse link
G Tgfb2 transforming growth factor, beta 2 involved_in IMP (MGI:3830400|PMID:19161227) BHF-UCL PMID:19161227 MGI:3830400 NCBI chr 1:186,622,787...186,709,697
Ensembl chr 1:186,622,792...186,705,989
JBrowse link
G Tgfbr1 transforming growth factor, beta receptor I involved_in IMP (MGI:3820811|PMID:18718461) BHF-UCL PMID:18718461 MGI:3820811 NCBI chr 4:47,353,222...47,414,926
Ensembl chr 4:47,353,222...47,414,931
JBrowse link
G Tgfbr2 transforming growth factor, beta receptor II involved_in IMP (MGI:3801267|PMID:17050629) BHF-UCL PMID:17050629 MGI:3801267 NCBI chr 9:116,087,695...116,175,363
Ensembl chr 9:116,084,293...116,175,360
JBrowse link
regulation of cardiac neural crest cell migration involved in outflow tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eng endoglin NOT|involved_in IMP (MGI:3721185|PMID:17628518) BHF-UCL PMID:17628518 MGI:3721185 NCBI chr 2:32,646,595...32,682,669
Ensembl chr 2:32,646,595...32,682,669
JBrowse link
regulation of epithelial to mesenchymal transition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clasp1 CLIP associating protein 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 1:118,389,058...118,609,462
Ensembl chr 1:118,389,058...118,612,678
JBrowse link
G Clasp2 CLIP associating protein 2 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 9:113,740,077...113,919,697
Ensembl chr 9:113,741,473...113,919,682
JBrowse link
G Dag1 dystroglycan 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 9:108,204,861...108,263,977
Ensembl chr 9:108,204,634...108,263,958
JBrowse link
G Ell3 elongation factor RNA polymerase II-like 3 involved_in IMP (MGI:5438719|PMID:22768269) UniProt PMID:22768269 MGI:5438719 NCBI chr 2:121,439,027...121,442,601
Ensembl chr 2:121,439,010...121,444,278
JBrowse link
G Epha3 Eph receptor A3 involved_in IMP (MGI:3703403|PMID:17046737) UniProt PMID:17046737 MGI:3703403 NCBI chr16:63,543,532...63,864,175
Ensembl chr16:63,543,534...63,864,175
JBrowse link
G Grem1 gremlin 1, DAN family BMP antagonist involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 2:113,748,675...113,758,648
Ensembl chr 2:113,746,164...113,758,646
JBrowse link
G Mcrip1 MAPK regulated corepressor interacting protein 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr11:120,542,888...120,549,727
Ensembl chr11:120,542,888...120,549,727
JBrowse link
G Phldb1 pleckstrin homology like domain, family B, member 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 9:44,686,308...44,735,248
Ensembl chr 9:44,686,304...44,735,198
JBrowse link
G Phldb2 pleckstrin homology like domain, family B, member 2 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr16:45,746,230...45,953,598
Ensembl chr16:45,746,243...45,953,598
JBrowse link
G Pofut2 protein O-fucosyltransferase 2 acts_upstream_of_or_within IMP (MGI:4838381|PMID:20637190) MGI PMID:20637190 MGI:4838381 NCBI chr10:77,259,081...77,269,586
Ensembl chr10:77,259,218...77,269,575
JBrowse link
G Smad7 SMAD family member 7 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr18:75,367,365...75,395,935
Ensembl chr18:75,367,529...75,395,935
JBrowse link
G Tbx20 T-box 20 involved_in NAS (MGI:3604925|PMID:15843409) BHF-UCL PMID:15843409 MGI:3604925 NCBI chr 9:24,720,812...24,774,303
Ensembl chr 9:24,718,138...24,774,303
JBrowse link
G Tiam1 T cell lymphoma invasion and metastasis 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr16:89,787,111...90,145,600
Ensembl chr16:89,787,111...90,143,769
JBrowse link
regulation of epithelial to mesenchymal transition involved in endocardial cushion formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tgfb1 transforming growth factor, beta 1 NOT|involved_in IMP (MGI:3830400|PMID:19161227) BHF-UCL PMID:19161227 MGI:3830400 NCBI chr 7:25,687,002...25,705,077
Ensembl chr 7:25,687,002...25,705,077
JBrowse link
G Tgfb3 transforming growth factor, beta 3 NOT|involved_in IMP (MGI:3830400|PMID:19161227) BHF-UCL PMID:19161227 MGI:3830400 NCBI chr12:86,056,743...86,079,041
Ensembl chr12:86,056,745...86,079,041
JBrowse link
regulation of neural crest cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmpr1a bone morphogenetic protein receptor, type 1A NOT|involved_in IMP (MGI:3040576|PMID:15073157) BHF-UCL PMID:15073157 MGI:3040576 NCBI chr14:34,411,061...34,503,336
Ensembl chr14:34,410,734...34,503,341
JBrowse link
regulation of neural crest cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmpr1a bone morphogenetic protein receptor, type 1A NOT|involved_in IMP (MGI:3040576|PMID:15073157) BHF-UCL PMID:15073157 MGI:3040576 NCBI chr14:34,411,061...34,503,336
Ensembl chr14:34,410,734...34,503,341
JBrowse link
ventral trunk neural crest cell migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nrp1 neuropilin 1 involved_in IMP (MGI:3848580|PMID:19386662) ParkinsonsUK-UCL PMID:19386662 MGI:3848580 NCBI chr 8:128,358,591...128,505,476
Ensembl chr 8:128,358,604...128,503,363
JBrowse link
G Nrp2 neuropilin 2 involved_in IMP (MGI:3848580|PMID:19386662) ParkinsonsUK-UCL PMID:19386662 MGI:3848580 NCBI chr 1:62,703,317...62,818,692
Ensembl chr 1:62,703,285...62,818,695
JBrowse link
G Sema3a sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A involved_in IMP (MGI:3848580|PMID:19386662) ParkinsonsUK-UCL PMID:19386662 MGI:3848580 NCBI chr 5:13,124,822...13,603,485
Ensembl chr 5:13,125,414...13,602,565
JBrowse link
G Sema3f sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F involved_in IMP (MGI:3848580|PMID:19386662) ParkinsonsUK-UCL PMID:19386662 MGI:3848580 NCBI chr 9:107,681,499...107,710,475
Ensembl chr 9:107,681,500...107,710,475
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28615
    cellular process 17655
      cellular developmental process 4820
        cell differentiation 4710
          mesenchymal cell differentiation 245
            cardiac endothelial to mesenchymal transition + 2
            epithelial to mesenchymal transition + 160
            mesenchymal cell development + 96
            mesenchymal cell differentiation involved in bone development 2
            mesenchymal cell differentiation involved in lung development 2
            mesenchymal cell differentiation involved in mammary gland development 0
            mesenchymal cell differentiation involved in renal system development + 7
            mesenchymal cell differentiation involved in salivary gland development 0
            mesenchymal cell fate commitment 1
            neural crest cell differentiation + 100
Path 2
Term Annotations click to browse term
  biological_process 28615
    developmental process 7145
      anatomical structure development 6528
        multicellular organism development 5880
          system development 5508
            animal organ development 4243
              mesenchyme development 303
                mesenchymal cell differentiation 245
                  cardiac endothelial to mesenchymal transition + 2
                  epithelial to mesenchymal transition + 160
                  mesenchymal cell development + 96
                  mesenchymal cell differentiation involved in bone development 2
                  mesenchymal cell differentiation involved in lung development 2
                  mesenchymal cell differentiation involved in mammary gland development 0
                  mesenchymal cell differentiation involved in renal system development + 7
                  mesenchymal cell differentiation involved in salivary gland development 0
                  mesenchymal cell fate commitment 1
                  neural crest cell differentiation + 100
paths to the root