Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:mesenchymal cell differentiation
go back to main search page
Accession:GO:0048762 term browser browse the term
Definition:The process in which a relatively unspecialized cell acquires specialized features of a mesenchymal cell. A mesenchymal cell is a loosely associated cell that is part of the connective tissue in an organism. Mesenchymal cells give rise to more mature connective tissue cell types.



show annotations for term's descendants           Sort by:
 
mesenchymal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP2 bone morphogenetic protein 2 involved_in IDA (PMID:9693150) UniProt
UniProt
PMID:9693150 NCBI chr20:6,767,686...6,780,246
Ensembl chr20:6,767,686...6,780,246
JBrowse link
G BMP7 bone morphogenetic protein 7 involved_in IDA (PMID:9693150) UniProt
UniProt
PMID:9693150 NCBI chr20:57,168,753...57,266,641
Ensembl chr20:57,168,753...57,266,641
JBrowse link
G FGFR1 fibroblast growth factor receptor 1 acts_upstream_of_or_within ISO (MGI:3620275|PMID:16442091) MGI PMID:16442091 MGI:3620275 NCBI chr 8:38,411,143...38,468,635
Ensembl chr 8:38,400,215...38,468,834
JBrowse link
G FGFR2 fibroblast growth factor receptor 2 involved_in
acts_upstream_of_or_within
ISS
ISO
(MGI:3620275|PMID:16442091) UniProt
UniProt
MGI
PMID:16442091 GO_REF:0000024 MGI:3620275 NCBI chr10:121,478,330...121,598,458
Ensembl chr10:121,478,332...121,598,458
JBrowse link
G FOXC1 forkhead box C1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1261705|PMID:9635428) MGI
Ensembl
PMID:9635428 GO_REF:0000107 MGI:1261705 NCBI chr 6:1,609,915...1,613,897
Ensembl chr 6:1,609,915...1,613,897
JBrowse link
G HMGA2 high mobility group AT-hook 2 involved_in IMP (PMID:17624332), (PMID:7606786) UniProt
UniProt
PMID:7606786 PMID:17624332 NCBI chr12:65,824,460...65,966,291
Ensembl chr12:65,824,460...65,966,291
JBrowse link
G ISL1 ISL LIM homeobox 1 involved_in
acts_upstream_of_or_within
ISS
IEA
ISO
(MGI:85032|PMID:9000074) BHF-UCL
Ensembl
BHF-UCL
MGI
PMID:9000074 GO_REF:0000024 GO_REF:0000107 MGI:85032 NCBI chr 5:51,383,448...51,394,730
Ensembl chr 5:51,383,448...51,394,730
JBrowse link
G NOG noggin involved_in
acts_upstream_of_or_within
ISO
IEA
(MGI:3771245|PMID:18028901) RGD
Ensembl
MGI
PMID:18028901 PMID:21238590 GO_REF:0000107 MGI:3771245 RGD:12801486 NCBI chr17:56,593,699...56,595,611
Ensembl chr17:56,593,699...56,595,611
JBrowse link
G PLAUR plasminogen activator, urokinase receptor ISO RGD PMID:11798065 RGD:729659 NCBI chr19:43,646,095...43,670,197
Ensembl chr19:43,646,095...43,670,547
JBrowse link
G TGFBR1 transforming growth factor beta receptor 1 involved_in TAS
ISS
(PMID:9759503) UniProt
UniProt
AgBase
AgBase
PMID:9759503 GO_REF:0000024 NCBI chr 9:99,104,038...99,154,192
Ensembl chr 9:99,104,038...99,154,192
JBrowse link
G WWTR1 WW domain containing transcription regulator 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3758168|PMID:17636028) Ensembl
Ensembl
MGI
PMID:17636028 GO_REF:0000107 MGI:3758168 NCBI chr 3:149,517,235...149,724,788
Ensembl chr 3:149,517,235...149,736,714
JBrowse link
G ZFP64 ZFP64 zinc finger protein involved_in IMP (PMID:18430783) UniProt
UniProt
PMID:18430783 NCBI chr20:52,084,011...52,191,789
Ensembl chr20:52,051,663...52,204,308
JBrowse link
canonical Wnt signaling pathway involved in cardiac neural crest cell differentiation involved in heart development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (MGI:4413394|PMID:19705442) MGI PMID:19705442 MGI:4413394 NCBI chr12:12,116,025...12,267,044
Ensembl chr12:12,116,025...12,267,044
JBrowse link
canonical Wnt signaling pathway involved in neural crest cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LRP6 LDL receptor related protein 6 involved_in IC (PMID:11029007) BHF-UCL
BHF-UCL
PMID:11029007 NCBI chr12:12,116,025...12,267,044
Ensembl chr12:12,116,025...12,267,044
JBrowse link
G WNT8A Wnt family member 8A involved_in ISS BHF-UCL
BHF-UCL
GO_REF:0000024 NCBI chr 5:138,077,367...138,092,900
Ensembl chr 5:138,083,990...138,092,365
JBrowse link
canonical Wnt signaling pathway involved in positive regulation of epithelial to mesenchymal transition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTNNB1 catenin beta 1 involved_in IMP (PMID:17072303) BHF-UCL
BHF-UCL
PMID:17072303 NCBI chr 3:41,199,422...41,240,445
Ensembl chr 3:41,194,741...41,260,096
JBrowse link
G TCF7L2 transcription factor 7 like 2 involved_in IMP (PMID:17072303) BHF-UCL
BHF-UCL
PMID:17072303 NCBI chr10:112,950,247...113,167,678
Ensembl chr10:112,950,247...113,167,678
JBrowse link
cardiac endothelial to mesenchymal transition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SEMA3C semaphorin 3C involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 7:80,742,538...80,922,389
Ensembl chr 7:80,742,538...80,922,359
JBrowse link
cardiac epithelial to mesenchymal transition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADAM15 ADAM metallopeptidase domain 15 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4458867|PMID:19156209) Ensembl
Ensembl
MGI
PMID:19156209 GO_REF:0000107 MGI:4458867 NCBI chr 1:155,051,316...155,062,775
Ensembl chr 1:155,050,566...155,062,775
JBrowse link
G BMP2 bone morphogenetic protein 2 involved_in IDA (PMID:18184661) BHF-UCL
BHF-UCL
PMID:18184661 NCBI chr20:6,767,686...6,780,246
Ensembl chr20:6,767,686...6,780,246
JBrowse link
G HEY1 hes related family bHLH transcription factor with YRPW motif 1 involved_in ISS BHF-UCL
BHF-UCL
GO_REF:0000024 NCBI chr 8:79,764,010...79,767,767
Ensembl chr 8:79,762,371...79,767,857
JBrowse link
G HEY2 hes related family bHLH transcription factor with YRPW motif 2 involved_in ISS
IEA
BHF-UCL
Ensembl
BHF-UCL
GO_REF:0000024 GO_REF:0000107 NCBI chr 6:125,747,639...125,762,243
Ensembl chr 6:125,747,664...125,761,269
JBrowse link
G HEYL hes related family bHLH transcription factor with YRPW motif like involved_in ISS
IEA
BHF-UCL
BHF-UCL
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr 1:39,623,435...39,639,643
Ensembl chr 1:39,623,435...39,639,643
JBrowse link
G NOTCH1 notch receptor 1 involved_in ISS
IEA
BHF-UCL
Ensembl
BHF-UCL
GO_REF:0000024 GO_REF:0000107 NCBI chr 9:136,494,433...136,546,048
Ensembl chr 9:136,494,433...136,546,048
JBrowse link
G OLFM1 olfactomedin 1 involved_in ISS AgBase
AgBase
GO_REF:0000024 NCBI chr 9:135,075,505...135,121,184
Ensembl chr 9:135,075,422...135,121,180
JBrowse link
G RTN4 reticulon 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4458867|PMID:19156209) Ensembl
Ensembl
MGI
PMID:19156209 GO_REF:0000107 MGI:4458867 NCBI chr 2:54,972,189...55,137,831
Ensembl chr 2:54,972,187...55,112,621
JBrowse link
G TBX3 T-box transcription factor 3 involved_in IMP (PMID:22130515) BHF-UCL
BHF-UCL
PMID:22130515 NCBI chr12:114,670,255...114,684,175
Ensembl chr12:114,670,255...114,684,175
JBrowse link
G TGFB2 transforming growth factor beta 2 involved_in IDA (PMID:10092230) BHF-UCL
BHF-UCL
PMID:10092230 NCBI chr 1:218,345,336...218,444,619
Ensembl chr 1:218,345,336...218,444,619
JBrowse link
G TGFBR1 transforming growth factor beta receptor 1 involved_in ISS AgBase
AgBase
GO_REF:0000024 NCBI chr 9:99,104,038...99,154,192
Ensembl chr 9:99,104,038...99,154,192
JBrowse link
G TGFBR3 transforming growth factor beta receptor 3 involved_in IDA (PMID:18184661) BHF-UCL
BHF-UCL
PMID:18184661 NCBI chr 1:91,680,343...91,906,002
Ensembl chr 1:91,680,343...91,906,335
JBrowse link
G WNT16 Wnt family member 16 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4458867|PMID:19156209) Ensembl
Ensembl
MGI
PMID:19156209 GO_REF:0000107 MGI:4458867 NCBI chr 7:121,325,367...121,341,104
Ensembl chr 7:121,325,367...121,341,104
JBrowse link
G WNT2 Wnt family member 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4439199|PMID:20159597) Ensembl
Ensembl
MGI
PMID:20159597 GO_REF:0000107 MGI:4439199 NCBI chr 7:117,275,451...117,323,058
Ensembl chr 7:117,275,451...117,323,152
JBrowse link
cardiac neural crest cell development involved in heart development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2179743|PMID:11694877) Ensembl
Ensembl
MGI
PMID:11694877 GO_REF:0000107 MGI:2179743 NCBI chr 6:139,371,807...139,374,648
Ensembl chr 6:139,371,807...139,374,648
JBrowse link
G MAPK1 mitogen-activated protein kinase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3832113|PMID:18952847) Ensembl
Ensembl
MGI
PMID:18952847 GO_REF:0000107 MGI:3832113 NCBI chr22:21,759,657...21,867,680
Ensembl chr22:21,759,657...21,867,680
JBrowse link
G MAPK3 mitogen-activated protein kinase 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3832113|PMID:18952847) Ensembl
Ensembl
MGI
PMID:18952847 GO_REF:0000107 MGI:3832113 NCBI chr16:30,114,105...30,123,309
Ensembl chr16:30,114,105...30,123,506
JBrowse link
cardiac neural crest cell development involved in outflow tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DICER1 dicer 1, ribonuclease III acts_upstream_of_or_within ISO (MGI:4849577|PMID:21098571) MGI PMID:21098571 MGI:4849577 NCBI chr14:95,086,228...95,158,010
Ensembl chr14:95,086,228...95,158,010
JBrowse link
G HAND2 heart and neural crest derivatives expressed 2 involved_in ISS
IEA
BHF-UCL
Ensembl
BHF-UCL
GO_REF:0000024 GO_REF:0000107 NCBI chr 4:173,526,091...173,530,229
Ensembl chr 4:173,524,969...173,530,229
JBrowse link
G HES1 hes family bHLH transcription factor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4354447|PMID:19609448) Ensembl
Ensembl
MGI
PMID:19609448 GO_REF:0000107 MGI:4354447 NCBI chr 3:194,136,148...194,138,732
Ensembl chr 3:194,136,148...194,138,732
JBrowse link
G JAG1 jagged canonical Notch ligand 1 involved_in ISS
IEA
BHF-UCL
BHF-UCL
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr20:10,637,684...10,673,999
Ensembl chr20:10,637,684...10,673,999
JBrowse link
G MIR452 microRNA 452 acts_upstream_of_or_within ISO (MGI:4849577|PMID:21098571) MGI PMID:21098571 MGI:4849577 NCBI chr  X:151,959,628...151,959,712
Ensembl chr  X:151,959,628...151,959,712
JBrowse link
G TWIST1 twist family bHLH transcription factor 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3805126|PMID:18539270) MGI
Ensembl
PMID:18539270 GO_REF:0000107 MGI:3805126 NCBI chr 7:19,113,047...19,117,636
Ensembl chr 7:19,020,991...19,117,636
JBrowse link
cardiac neural crest cell migration involved in outflow tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDC42 cell division cycle 42 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 1:22,052,709...22,101,360
Ensembl chr 1:22,025,511...22,101,360
JBrowse link
G EDN1 endothelin 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 6:12,256,463...12,297,194
Ensembl chr 6:12,290,361...12,297,194
JBrowse link
G EDNRA endothelin receptor type A involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 4:147,481,097...147,544,954
Ensembl chr 4:147,480,917...147,544,954
JBrowse link
G FOLR1 folate receptor alpha involved_in ISS
IEA
BHF-UCL
Ensembl
BHF-UCL
GO_REF:0000024 GO_REF:0000107 NCBI chr11:72,189,709...72,196,323
Ensembl chr11:72,189,558...72,196,323
JBrowse link
G HAND2 heart and neural crest derivatives expressed 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4453274|PMID:20144608) Ensembl
Ensembl
MGI
PMID:20144608 GO_REF:0000107 MGI:4453274 NCBI chr 4:173,526,091...173,530,229
Ensembl chr 4:173,524,969...173,530,229
JBrowse link
G NRP1 neuropilin 1 NOT|involved_in ISO (MGI:5693177|PMID:26053665) BHF-UCL PMID:26053665 MGI:5693177 NCBI chr10:33,177,493...33,334,667
Ensembl chr10:33,177,492...33,336,262
JBrowse link
G PITX2 paired like homeodomain 2 involved_in ISS BHF-UCL
BHF-UCL
GO_REF:0000024 NCBI chr 4:110,617,423...110,642,123
Ensembl chr 4:110,617,423...110,642,123
JBrowse link
G TWIST1 twist family bHLH transcription factor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3805126|PMID:18539270) Ensembl
Ensembl
MGI
PMID:18539270 GO_REF:0000107 MGI:3805126 NCBI chr 7:19,113,047...19,117,636
Ensembl chr 7:19,020,991...19,117,636
JBrowse link
endocardial cushion to mesenchymal transition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACVRL1 activin A receptor like type 1 NOT|involved_in ISS BHF-UCL
BHF-UCL
GO_REF:0000024 NCBI chr12:51,906,913...51,923,361
Ensembl chr12:51,906,908...51,923,361
JBrowse link
G ENG endoglin NOT|involved_in ISS BHF-UCL
BHF-UCL
GO_REF:0000024 NCBI chr 9:127,815,012...127,854,773
Ensembl chr 9:127,815,013...127,854,658
JBrowse link
G HAS2 hyaluronan synthase 2 involved_in ISS
IEA
UniProt
Ensembl
UniProt
GO_REF:0000024 GO_REF:0000107 NCBI chr 8:121,612,116...121,641,440
Ensembl chr 8:121,612,116...121,641,440
JBrowse link
endocardial cushion to mesenchymal transition involved in heart valve formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EFNA1 ephrin A1 involved_in ISS
IEA
BHF-UCL
Ensembl
BHF-UCL
GO_REF:0000024 GO_REF:0000107 NCBI chr 1:155,127,876...155,134,899
Ensembl chr 1:155,127,876...155,134,899
JBrowse link
G ERG ETS transcription factor ERG acts_upstream_of_or_within ISO (MGI:5442628|PMID:22932696) MGI PMID:22932696 MGI:5442628 NCBI chr21:38,367,261...38,661,783
Ensembl chr21:38,380,027...38,661,780
JBrowse link
G HEY1 hes related family bHLH transcription factor with YRPW motif 1 acts_upstream_of_or_within ISO (MGI:3530185|PMID:15680351) MGI PMID:15680351 MGI:3530185 NCBI chr 8:79,764,010...79,767,767
Ensembl chr 8:79,762,371...79,767,857
JBrowse link
G HEY2 hes related family bHLH transcription factor with YRPW motif 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3530185|PMID:15680351) Ensembl
Ensembl
MGI
PMID:15680351 GO_REF:0000107 MGI:3530185 NCBI chr 6:125,747,639...125,762,243
Ensembl chr 6:125,747,664...125,761,269
JBrowse link
epithelial to mesenchymal transition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AKNA AT-hook transcription factor involved_in ISS
IBA
IEA
(PMID:21873635) UniProt
GO_Central
UniProt
Ensembl
GO_Central
PMID:21873635 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:114,334,149...114,398,498
Ensembl chr 9:114,334,156...114,394,405
JBrowse link
G AMELX amelogenin X-linked involved_in ISS (PMID:1734713) BHF-UCL
BHF-UCL
PMID:1734713 NCBI chr  X:11,293,413...11,304,149
Ensembl chr  X:11,293,413...11,300,761
JBrowse link
G BMP2 bone morphogenetic protein 2 involved_in
acts_upstream_of_or_within
ISS
IEA
IDA
(PMID:18184661)
(PMID:15110716)
BHF-UCL
BHF-UCL
Ensembl
MGI
MGI
PMID:15110716 PMID:18184661 GO_REF:0000024 GO_REF:0000107 NCBI chr20:6,767,686...6,780,246
Ensembl chr20:6,767,686...6,780,246
JBrowse link
G BMP7 bone morphogenetic protein 7 involved_in TAS (PMID:14679171) HGNC-UCL
HGNC-UCL
PMID:14679171 NCBI chr20:57,168,753...57,266,641
Ensembl chr20:57,168,753...57,266,641
JBrowse link
G CTNNB1 catenin beta 1 involved_in TAS (PMID:14679171) HGNC-UCL
HGNC-UCL
PMID:14679171 NCBI chr 3:41,199,422...41,240,445
Ensembl chr 3:41,194,741...41,260,096
JBrowse link
G CUL7 cullin 7 involved_in IDA (PMID:20139075) UniProt
UniProt
PMID:20139075 NCBI chr 6:43,037,617...43,053,945
Ensembl chr 6:43,037,617...43,053,943
JBrowse link
G DDX17 DEAD-box helicase 17 involved_in IMP (PMID:24910439) UniProt
UniProt
PMID:24910439 NCBI chr22:38,483,438...38,506,311
Ensembl chr22:38,483,438...38,507,660
JBrowse link
G DDX5 DEAD-box helicase 5 involved_in IMP (PMID:24910439) UniProt
UniProt
PMID:24910439 NCBI chr17:64,498,254...64,506,866
Ensembl chr17:64,498,254...64,508,199
JBrowse link
G DLG5 discs large MAGUK scaffold protein 5 involved_in IMP (PMID:28169360) UniProt
UniProt
PMID:28169360 NCBI chr10:77,790,787...77,926,755
Ensembl chr10:77,790,791...77,926,755
JBrowse link
G ENG endoglin involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 9:127,815,012...127,854,773
Ensembl chr 9:127,815,013...127,854,658
JBrowse link
G EPB41L5 erythrocyte membrane protein band 4.1 like 5 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 2:120,013,032...120,179,119
Ensembl chr 2:120,013,077...120,179,119
JBrowse link
G FAM83D family with sequence similarity 83 member D involved_in IDA (PMID:24344117) UniProt
UniProt
PMID:24344117 NCBI chr20:38,926,417...38,953,106
Ensembl chr20:38,926,312...38,953,106
JBrowse link
G FGFR1 fibroblast growth factor receptor 1 involved_in IMP (PMID:26451614) BHF-UCL
BHF-UCL
PMID:26451614 NCBI chr 8:38,411,143...38,468,635
Ensembl chr 8:38,400,215...38,468,834
JBrowse link
G FGFR2 fibroblast growth factor receptor 2 involved_in IEA
ISO
Ensembl
Ensembl
RGD
PMID:7803853 GO_REF:0000107 RGD:632663 NCBI chr10:121,478,330...121,598,458
Ensembl chr10:121,478,332...121,598,458
JBrowse link
G FLNA filamin A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5085960|PMID:21709252) Ensembl
Ensembl
MGI
PMID:21709252 GO_REF:0000107 MGI:5085960 NCBI chr  X:154,348,531...154,374,634
Ensembl chr  X:154,348,524...154,374,634
JBrowse link
G FOXF2 forkhead box F2 involved_in NAS (PMID:19220249) UniProt
UniProt
PMID:19220249 NCBI chr 6:1,389,576...1,395,603
Ensembl chr 6:1,389,576...1,395,603
JBrowse link
G GSK3B glycogen synthase kinase 3 beta involved_in IMP (PMID:15448698) UniProt
UniProt
PMID:15448698 NCBI chr 3:119,821,321...120,095,823
Ensembl chr 3:119,821,321...120,094,994
JBrowse link
G HGF hepatocyte growth factor involved_in TAS (PMID:14679171) HGNC-UCL
HGNC-UCL
PMID:14679171 NCBI chr 7:81,699,006...81,770,438
Ensembl chr 7:81,699,010...81,770,438
JBrowse link
G HIF1A hypoxia inducible factor 1 subunit alpha involved_in ISS
IEA
(PMID:18037992) BHF-UCL
BHF-UCL
Ensembl
PMID:18037992 GO_REF:0000107 NCBI chr14:61,695,513...61,748,258
Ensembl chr14:61,695,513...61,748,259
JBrowse link
G HMGA2 high mobility group AT-hook 2 involved_in IMP (PMID:18832382) UniProt
UniProt
PMID:18832382 NCBI chr12:65,824,460...65,966,291
Ensembl chr12:65,824,460...65,966,291
JBrowse link
G HNRNPAB heterogeneous nuclear ribonucleoprotein A/B involved_in ISS HGNC-UCL
HGNC-UCL
GO_REF:0000024 NCBI chr 5:178,204,533...178,211,163
Ensembl chr 5:178,204,533...178,211,163
JBrowse link
G LEF1 lymphoid enhancer binding factor 1 involved_in ISS
IEA
BHF-UCL
BHF-UCL
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr 4:108,047,548...108,168,932
Ensembl chr 4:108,047,545...108,168,956
JBrowse link
G LIMS1 LIM zinc finger domain containing 1 NOT|involved_in IMP (PMID:20926685) UniProt
UniProt
PMID:20926685 NCBI chr 2:108,533,671...108,687,246
Ensembl chr 2:108,534,355...108,687,246
JBrowse link
G LOXL2 lysyl oxidase like 2 involved_in IDA (PMID:16096638) UniProt
UniProt
PMID:16096638 NCBI chr 8:23,296,897...23,404,120
Ensembl chr 8:23,296,897...23,425,328
JBrowse link
G LOXL3 lysyl oxidase like 3 involved_in IDA (PMID:16096638) UniProt
UniProt
PMID:16096638 NCBI chr 2:74,532,258...74,555,719
Ensembl chr 2:74,532,258...74,555,690
JBrowse link
G MEG8 maternally expressed 8, small nucleolar RNA host gene acts_upstream_of_or_within ISO (MGI:6272541|PMID:29636669) MGI PMID:29636669 MGI:6272541 NCBI chr14:100,889,649...100,999,113
Ensembl chr14:100,894,770...101,038,859
JBrowse link
G MSX1 msh homeobox 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:4,859,665...4,863,936
Ensembl chr 4:4,859,665...4,863,936
JBrowse link
G NFATC1 nuclear factor of activated T cells 1 acts_upstream_of_or_within ISO (MGI:3053252|PMID:15339668) MGI PMID:15339668 MGI:3053252 NCBI chr18:79,395,930...79,529,323
Ensembl chr18:79,395,856...79,529,325
JBrowse link
G NOG noggin involved_in ISS
IEA
(PMID:10780858) UniProt
UniProt
Ensembl
PMID:10780858 GO_REF:0000024 GO_REF:0000107 NCBI chr17:56,593,699...56,595,611
Ensembl chr17:56,593,699...56,595,611
JBrowse link
G NOTCH1 notch receptor 1 involved_in
acts_upstream_of_or_within
IMP
ISS
IEA
ISO
(PMID:17984306)
(MGI:3027664|PMID:14701881)
BHF-UCL
BHF-UCL
Ensembl
MGI
PMID:14701881 PMID:17984306 GO_REF:0000024 GO_REF:0000107 MGI:3027664 NCBI chr 9:136,494,433...136,546,048
Ensembl chr 9:136,494,433...136,546,048
JBrowse link
G NOTCH4 notch receptor 4 involved_in IMP (PMID:17984306) ARUK-UCL
ARUK-UCL
PMID:17984306 NCBI chr 6:32,194,843...32,224,067
Ensembl chr 6:32,194,843...32,224,067
JBrowse link
G PPP3R1 protein phosphatase 3 regulatory subunit B, alpha acts_upstream_of_or_within ISO (MGI:3053252|PMID:15339668) MGI PMID:15339668 MGI:3053252 NCBI chr 2:68,178,857...68,252,532
Ensembl chr 2:68,178,857...68,256,237
JBrowse link
G RBPJ recombination signal binding protein for immunoglobulin kappa J region involved_in
acts_upstream_of_or_within
ISS
IEA
ISO
(MGI:3027664|PMID:14701881) BHF-UCL
Ensembl
BHF-UCL
MGI
PMID:14701881 GO_REF:0000024 GO_REF:0000107 MGI:3027664 NCBI chr 4:26,163,458...26,435,131
Ensembl chr 4:26,163,455...26,435,131
JBrowse link
G RFLNB refilin B involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5085960|PMID:21709252) Ensembl
Ensembl
MGI
PMID:21709252 GO_REF:0000107 MGI:5085960 NCBI chr17:439,978...445,940
Ensembl chr17:439,978...445,939
JBrowse link
G ROCK1 Rho associated coiled-coil containing protein kinase 1 involved_in ISS
IEA
BHF-UCL
Ensembl
BHF-UCL
GO_REF:0000024 GO_REF:0000107 NCBI chr18:20,946,906...21,111,813
Ensembl chr18:20,946,906...21,111,813
JBrowse link
G ROCK2 Rho associated coiled-coil containing protein kinase 2 involved_in ISS BHF-UCL
BHF-UCL
GO_REF:0000024 NCBI chr 2:11,179,759...11,345,437
Ensembl chr 2:11,179,759...11,348,330
JBrowse link
G S100A4 S100 calcium binding protein A4 involved_in TAS (PMID:14679171) HGNC-UCL
HGNC-UCL
PMID:14679171 NCBI chr 1:153,543,621...153,545,806
Ensembl chr 1:153,543,613...153,550,136
JBrowse link
G SNAI1 snail family transcriptional repressor 1 involved_in IDA
ISS
IEA
(PMID:16096638) UniProt
UniProt
Ensembl
PMID:16096638 GO_REF:0000024 GO_REF:0000107 NCBI chr20:49,982,980...49,988,886
Ensembl chr20:49,982,980...49,988,886
JBrowse link
G SNAI2 snail family transcriptional repressor 2 involved_in
acts_upstream_of_or_within
IMP
IEA
ISO
(PMID:17984306), (PMID:9182671)
(MGI:3762325|PMID:17916597)
BHF-UCL
BHF-UCL
Ensembl
MGI
PMID:9182671 PMID:17916597 PMID:17984306 GO_REF:0000107 MGI:3762325 NCBI chr 8:48,917,598...48,921,429
Ensembl chr 8:48,917,598...48,921,740
JBrowse link
G SOX9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within
ISS
IEA
ISO
(MGI:3041362|PMID:15096597) UniProt
UniProt
Ensembl
MGI
PMID:15096597 GO_REF:0000024 GO_REF:0000107 MGI:3041362 NCBI chr17:72,121,020...72,126,416
Ensembl chr17:72,121,020...72,126,416
JBrowse link
G TGFB1 transforming growth factor beta 1 involved_in
acts_upstream_of_or_within
TAS
IDA
IEA
ISO
(PMID:26451614)
(PMID:29529050)
(PMID:25893292)
BHF-UCL
MGI
Ensembl
UniProt
BHF-UCL
MGI
UniProt
RGD
Ensembl
PMID:10504497 PMID:25893292 PMID:26451614 PMID:29529050 GO_REF:0000107 RGD:1578678 NCBI chr19:41,330,323...41,353,922
Ensembl chr19:41,301,587...41,353,922
JBrowse link
G TGFB2 transforming growth factor beta 2 involved_in TAS
IDA
(PMID:14679171)
(PMID:10092230), (PMID:18223299)
HGNC-UCL
HGNC-UCL
BHF-UCL
BHF-UCL
PMID:10092230 PMID:14679171 PMID:18223299 NCBI chr 1:218,345,336...218,444,619
Ensembl chr 1:218,345,336...218,444,619
JBrowse link
G TGFBR1 transforming growth factor beta receptor 1 involved_in IDA (PMID:15761148) UniProt
UniProt
PMID:15761148 NCBI chr 9:99,104,038...99,154,192
Ensembl chr 9:99,104,038...99,154,192
JBrowse link
G TGFBR3 transforming growth factor beta receptor 3 involved_in IBA
IDA
(PMID:21873635)
(PMID:18184661)
GO_Central
BHF-UCL
GO_Central
BHF-UCL
PMID:18184661 PMID:21873635 NCBI chr 1:91,680,343...91,906,002
Ensembl chr 1:91,680,343...91,906,335
JBrowse link
G TGFBR3L transforming growth factor beta receptor 3 like involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr19:7,914,830...7,919,097
Ensembl chr19:7,914,830...7,919,097
JBrowse link
G TRIM28 tripartite motif containing 28 involved_in ISS
IEA
HGNC-UCL
HGNC-UCL
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr19:58,544,064...58,550,722
Ensembl chr19:58,544,064...58,550,722
JBrowse link
G TRIP10 thyroid hormone receptor interactor 10 ISO RGD PMID:23819628 RGD:11535143 NCBI chr19:6,739,680...6,751,530
Ensembl chr19:6,737,925...6,751,530
JBrowse link
G WNT11 Wnt family member 11 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5634837|PMID:25813538) Ensembl
Ensembl
MGI
PMID:25813538 GO_REF:0000107 MGI:5634837 NCBI chr11:76,186,325...76,210,842
Ensembl chr11:76,186,325...76,210,736
JBrowse link
G WNT4 Wnt family member 4 involved_in IEP (PMID:12841867) UniProt
UniProt
PMID:12841867 NCBI chr 1:22,117,308...22,143,981
Ensembl chr 1:22,117,313...22,143,969
JBrowse link
G WNT5A Wnt family member 5A involved_in IEP (PMID:12841867) UniProt
UniProt
PMID:12841867 NCBI chr 3:55,465,715...55,505,261
Ensembl chr 3:55,465,715...55,490,539
JBrowse link
epithelial to mesenchymal transition involved in cardiac fibroblast development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PDCD4 programmed cell death 4 involved_in ISS
IEA
BHF-UCL
Ensembl
BHF-UCL
GO_REF:0000024 GO_REF:0000107 NCBI chr10:110,871,928...110,900,006
Ensembl chr10:110,871,795...110,900,006
JBrowse link
G SPRY1 sprouty RTK signaling antagonist 1 involved_in ISS
IEA
BHF-UCL
Ensembl
BHF-UCL
GO_REF:0000024 GO_REF:0000107 NCBI chr 4:123,396,795...123,403,760
Ensembl chr 4:123,396,795...123,403,760
JBrowse link
epithelial to mesenchymal transition involved in endocardial cushion formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP4 bone morphogenetic protein 4 NOT|involved_in ISS BHF-UCL
BHF-UCL
GO_REF:0000024 NCBI chr14:53,949,736...53,956,891
Ensembl chr14:53,949,736...53,958,761
JBrowse link
G ENG endoglin involved_in ISS
IEA
BHF-UCL
BHF-UCL
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr 9:127,815,012...127,854,773
Ensembl chr 9:127,815,013...127,854,658
JBrowse link
G FGF8 fibroblast growth factor 8 involved_in
acts_upstream_of_or_within
ISS
IEA
ISO
(MGI:5002778|PMID:21364285) BHF-UCL
Ensembl
BHF-UCL
MGI
PMID:21364285 GO_REF:0000024 GO_REF:0000107 MGI:5002778 NCBI chr10:101,770,109...101,780,369
Ensembl chr10:101,770,109...101,780,371
JBrowse link
G HEY1 hes related family bHLH transcription factor with YRPW motif 1 acts_upstream_of_or_within ISO (MGI:3783952|PMID:17303760) MGI PMID:17303760 MGI:3783952 NCBI chr 8:79,764,010...79,767,767
Ensembl chr 8:79,762,371...79,767,857
JBrowse link
G HEY2 hes related family bHLH transcription factor with YRPW motif 2 involved_in TAS (PMID:20951801) BHF-UCL
BHF-UCL
PMID:20951801 NCBI chr 6:125,747,639...125,762,243
Ensembl chr 6:125,747,664...125,761,269
JBrowse link
G HEYL hes related family bHLH transcription factor with YRPW motif like involved_in
acts_upstream_of_or_within
ISS
TAS
IEA
ISO
(PMID:20951801)
(MGI:3783952|PMID:17303760)
UniProt
UniProt
BHF-UCL
Ensembl
MGI
BHF-UCL
PMID:17303760 PMID:20951801 GO_REF:0000024 GO_REF:0000107 MGI:3783952 NCBI chr 1:39,623,435...39,639,643
Ensembl chr 1:39,623,435...39,639,643
JBrowse link
G MSX1 msh homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3810851|PMID:18667074) Ensembl
Ensembl
MGI
PMID:18667074 GO_REF:0000107 MGI:3810851 NCBI chr 4:4,859,665...4,863,936
Ensembl chr 4:4,859,665...4,863,936
JBrowse link
G MSX2 msh homeobox 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3810851|PMID:18667074) MGI
Ensembl
Ensembl
PMID:18667074 GO_REF:0000107 MGI:3810851 NCBI chr 5:174,724,582...174,730,896
Ensembl chr 5:174,724,582...174,730,896
JBrowse link
G NOTCH1 notch receptor 1 involved_in ISS
IEA
BHF-UCL
BHF-UCL
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr 9:136,494,433...136,546,048
Ensembl chr 9:136,494,433...136,546,048
JBrowse link
G RBPJ recombination signal binding protein for immunoglobulin kappa J region involved_in ISS
IEA
BHF-UCL
BHF-UCL
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr 4:26,163,458...26,435,131
Ensembl chr 4:26,163,455...26,435,131
JBrowse link
G SMAD4 SMAD family member 4 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr18:51,030,213...51,085,042
Ensembl chr18:51,028,394...51,085,045
JBrowse link
G SNAI1 snail family transcriptional repressor 1 involved_in ISS
TAS
IEA
(PMID:20951801) BHF-UCL
BHF-UCL
Ensembl
PMID:20951801 GO_REF:0000024 GO_REF:0000107 NCBI chr20:49,982,980...49,988,886
Ensembl chr20:49,982,980...49,988,886
JBrowse link
G SNAI2 snail family transcriptional repressor 2 involved_in
acts_upstream_of_or_within
TAS
ISS
IEA
ISO
(PMID:20951801)
(MGI:3808643|PMID:18663143)
BHF-UCL
BHF-UCL
Ensembl
MGI
PMID:18663143 PMID:20951801 GO_REF:0000024 GO_REF:0000107 MGI:3808643 NCBI chr 8:48,917,598...48,921,429
Ensembl chr 8:48,917,598...48,921,740
JBrowse link
G TMEM100 transmembrane protein 100 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5613881|PMID:25318679) Ensembl
Ensembl
MGI
PMID:25318679 GO_REF:0000107 MGI:5613881 NCBI chr17:55,719,627...55,732,081
Ensembl chr17:55,719,627...55,732,121
JBrowse link
mesenchymal cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALX1 ALX homeobox 1 acts_upstream_of_or_within ISO (MGI:81193|PMID:8673125) MGI PMID:8673125 MGI:81193 NCBI chr12:85,280,220...85,301,784
Ensembl chr12:85,280,220...85,301,784
JBrowse link
G BCL2 BCL2 apoptosis regulator involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:81253|PMID:8623928) Ensembl
Ensembl
MGI
PMID:8623928 GO_REF:0000107 MGI:81253 NCBI chr18:63,123,346...63,320,280
Ensembl chr18:63,123,346...63,320,128
JBrowse link
G FOXC1 forkhead box C1 involved_in ISS
IEA
UniProt
UniProt
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr 6:1,609,915...1,613,897
Ensembl chr 6:1,609,915...1,613,897
JBrowse link
G HEY1 hes related family bHLH transcription factor with YRPW motif 1 involved_in ISO (MGI:3783952|PMID:17303760) BHF-UCL PMID:17303760 MGI:3783952 NCBI chr 8:79,764,010...79,767,767
Ensembl chr 8:79,762,371...79,767,857
JBrowse link
G HEY2 hes related family bHLH transcription factor with YRPW motif 2 involved_in ISS
IEA
BHF-UCL
Ensembl
BHF-UCL
GO_REF:0000024 GO_REF:0000107 NCBI chr 6:125,747,639...125,762,243
Ensembl chr 6:125,747,664...125,761,269
JBrowse link
G HEYL hes related family bHLH transcription factor with YRPW motif like involved_in ISS
IEA
BHF-UCL
BHF-UCL
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr 1:39,623,435...39,639,643
Ensembl chr 1:39,623,435...39,639,643
JBrowse link
G NOTCH1 notch receptor 1 involved_in ISS
IEA
BHF-UCL
BHF-UCL
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr 9:136,494,433...136,546,048
Ensembl chr 9:136,494,433...136,546,048
JBrowse link
G TBX20 T-box transcription factor 20 involved_in ISS
IEA
BHF-UCL
Ensembl
BHF-UCL
GO_REF:0000024 GO_REF:0000107 NCBI chr 7:35,199,936...35,254,100
Ensembl chr 7:35,202,430...35,254,100
JBrowse link
mesenchymal cell differentiation involved in bone development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EXT1 exostosin glycosyltransferase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4834113|PMID:20404326) Ensembl
Ensembl
MGI
PMID:20404326 GO_REF:0000107 MGI:4834113 NCBI chr 8:117,794,490...118,111,826
Ensembl chr 8:117,794,490...118,111,826
JBrowse link
G RANBP3L RAN binding protein 3 like involved_in ISS
IEA
UniProt
Ensembl
UniProt
GO_REF:0000024 GO_REF:0000107 NCBI chr 5:36,246,913...36,301,902
Ensembl chr 5:36,246,913...36,302,114
JBrowse link
mesenchymal cell differentiation involved in kidney development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AMER1 APC membrane recruitment protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5013668|PMID:21571217) Ensembl
Ensembl
MGI
PMID:21571217 GO_REF:0000107 MGI:5013668 NCBI chr  X:64,185,117...64,205,708
Ensembl chr  X:64,185,117...64,205,708
JBrowse link
G BMP4 bone morphogenetic protein 4 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr14:53,949,736...53,956,891
Ensembl chr14:53,949,736...53,958,761
JBrowse link
G SIX2 SIX homeobox 2 involved_in ISS
IEA
UniProt
Ensembl
UniProt
GO_REF:0000024 GO_REF:0000107 NCBI chr 2:45,005,182...45,009,645
Ensembl chr 2:45,005,182...45,009,452
JBrowse link
mesenchymal cell differentiation involved in lung development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FGF10 fibroblast growth factor 10 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3688953|PMID:16989802) Ensembl
Ensembl
MGI
PMID:16989802 GO_REF:0000107 MGI:3688953 NCBI chr 5:44,300,247...44,389,706
Ensembl chr 5:44,300,247...44,389,706
JBrowse link
G FGFR2 fibroblast growth factor receptor 2 involved_in
acts_upstream_of_or_within
ISS
ISO
(MGI:3688953|PMID:16989802) UniProt
UniProt
MGI
PMID:16989802 GO_REF:0000024 MGI:3688953 NCBI chr10:121,478,330...121,598,458
Ensembl chr10:121,478,332...121,598,458
JBrowse link
mesenchymal cell differentiation involved in renal system development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP4 bone morphogenetic protein 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:53,949,736...53,956,891
Ensembl chr14:53,949,736...53,958,761
JBrowse link
mesenchymal cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHRD chordin involved_in ISO (MGI:2178923|PMID:11969257) MGI PMID:11969257 MGI:2178923 NCBI chr 3:184,380,054...184,390,739
Ensembl chr 3:184,380,073...184,390,736
JBrowse link
mesodermal to mesenchymal transition involved in gastrulation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EOMES eomesodermin involved_in ISS
IEA
UniProt
UniProt
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr 3:27,715,953...27,722,713
Ensembl chr 3:27,715,949...27,722,711
JBrowse link
G TASOR transcription activation suppressor involved_in ISS UniProt
UniProt
GO_REF:0000024 NCBI chr 3:56,620,132...56,683,265
Ensembl chr 3:56,620,132...56,683,265
JBrowse link
G WNT5A Wnt family member 5A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5634837|PMID:25813538) Ensembl
Ensembl
MGI
PMID:25813538 GO_REF:0000107 MGI:5634837 NCBI chr 3:55,465,715...55,505,261
Ensembl chr 3:55,465,715...55,490,539
JBrowse link
metanephric mesenchymal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G OSR1 odd-skipped related transcription factor 1 involved_in ISS
IEA
UniProt
Ensembl
UniProt
GO_REF:0000024 GO_REF:0000107 NCBI chr 2:19,351,485...19,358,623
Ensembl chr 2:19,351,485...19,358,623
JBrowse link
G PAX2 paired box 2 involved_in ISS UniProt
UniProt
GO_REF:0000024 NCBI chr10:100,735,396...100,829,944
Ensembl chr10:100,735,396...100,829,944
JBrowse link
G STAT1 signal transducer and activator of transcription 1 involved_in ISS UniProt
UniProt
GO_REF:0000024 NCBI chr 2:190,968,989...191,014,197
Ensembl chr 2:190,908,460...191,020,960
JBrowse link
G TCF21 transcription factor 21 involved_in ISS
IEA
UniProt
Ensembl
UniProt
GO_REF:0000024 GO_REF:0000107 NCBI chr 6:133,889,113...133,895,537
Ensembl chr 6:133,889,113...133,895,553
JBrowse link
G WNT4 Wnt family member 4 involved_in NAS (PMID:16368682) UniProt
UniProt
PMID:16368682 NCBI chr 1:22,117,308...22,143,981
Ensembl chr 1:22,117,313...22,143,969
JBrowse link
negative regulation of epithelial to mesenchymal transition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADIPOR1 adiponectin receptor 1 involved_in IMP (PMID:23776679) BHF-UCL
BHF-UCL
PMID:23776679 NCBI chr 1:202,940,825...202,958,572
Ensembl chr 1:202,940,826...202,958,572
JBrowse link
G BMP5 bone morphogenetic protein 5 involved_in NAS (PMID:21319131) BHF-UCL
BHF-UCL
PMID:21319131 NCBI chr 6:55,753,653...55,875,590
Ensembl chr 6:55,753,653...55,875,590
JBrowse link
G DAB2IP DAB2 interacting protein involved_in IMP
IDA
(PMID:20080667)
(PMID:20154697)
BHF-UCL
BHF-UCL
UniProt
UniProt
PMID:20080667 PMID:20154697 NCBI chr 9:121,566,883...121,785,530
Ensembl chr 9:121,567,057...121,785,530
JBrowse link
G DACT3 dishevelled binding antagonist of beta catenin 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5503293|PMID:23580654) Ensembl
Ensembl
MGI
PMID:23580654 GO_REF:0000107 MGI:5503293 NCBI chr19:46,647,551...46,661,182
Ensembl chr19:46,647,551...46,661,182
JBrowse link
G EFNA1 ephrin A1 involved_in ISS
IEA
BHF-UCL
Ensembl
BHF-UCL
GO_REF:0000024 GO_REF:0000107 NCBI chr 1:155,127,876...155,134,899
Ensembl chr 1:155,127,876...155,134,899
JBrowse link
G EPHA4 EPH receptor A4 involved_in IMP (PMID:29093007) ARUK-UCL
ARUK-UCL
PMID:29093007 NCBI chr 2:221,418,027...221,574,202
Ensembl chr 2:221,418,027...221,574,202
JBrowse link
G FOXA1 forkhead box A1 involved_in IMP (PMID:20160041) BHF-UCL
BHF-UCL
PMID:20160041 NCBI chr14:37,589,552...37,595,249
Ensembl chr14:37,589,552...37,596,059
JBrowse link
G FOXA2 forkhead box A2 involved_in IMP (PMID:20160041) BHF-UCL
BHF-UCL
PMID:20160041 NCBI chr20:22,580,998...22,585,490
Ensembl chr20:22,580,998...22,585,455
JBrowse link
G GATA3 GATA binding protein 3 acts_upstream_of IMP (PMID:26451614) BHF-UCL
BHF-UCL
PMID:26451614 NCBI chr10:8,045,420...8,075,198
Ensembl chr10:8,045,378...8,075,198
JBrowse link
G HPN hepsin involved_in IDA
IBA
(PMID:19843851)
(PMID:21873635)
UniProt
GO_Central
UniProt
GO_Central
PMID:19843851 PMID:21873635 NCBI chr19:35,040,506...35,066,573
Ensembl chr19:35,040,506...35,066,573
JBrowse link
G IL17RD interleukin 17 receptor D involved_in ISS
IEA
UniProt
UniProt
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr 3:57,089,982...57,170,317
Ensembl chr 3:57,089,982...57,170,306
JBrowse link
G LDLRAD4 low density lipoprotein receptor class A domain containing 4 involved_in IMP (PMID:24627487) UniProt
UniProt
PMID:24627487 NCBI chr18:13,217,606...13,652,754
Ensembl chr18:13,217,498...13,652,755
JBrowse link
G MAD2L2 mitotic arrest deficient 2 like 2 involved_in IMP (PMID:19443654) BHF-UCL
BHF-UCL
PMID:19443654 NCBI chr 1:11,674,480...11,691,559
Ensembl chr 1:11,674,480...11,691,650
JBrowse link
G MARK1 microtubule affinity regulating kinase 1 involved_in IDA (PMID:31281935) ARUK-UCL
ARUK-UCL
PMID:31281935 NCBI chr 1:220,528,136...220,664,461
Ensembl chr 1:220,528,136...220,664,461
JBrowse link
G NKX2-1 NK2 homeobox 1 involved_in IDA (PMID:19293183) UniProt
UniProt
PMID:19293183 NCBI chr14:36,516,397...36,520,232
Ensembl chr14:36,516,392...36,521,149
JBrowse link
G OVOL2 ovo like zinc finger 2 involved_in TAS
ISS
IEA
(PMID:28455959) ARUK-UCL
ARUK-UCL
UniProt
Ensembl
UniProt
PMID:28455959 GO_REF:0000024 GO_REF:0000107 NCBI chr20:18,024,152...18,059,188
Ensembl chr20:17,956,979...18,059,188
JBrowse link
G PPP2CA protein phosphatase 2 catalytic subunit alpha involved_in IMP (PMID:20080667) BHF-UCL
BHF-UCL
PMID:20080667 NCBI chr 5:134,194,332...134,226,073
Ensembl chr 5:134,194,332...134,226,073
JBrowse link
G PTEN phosphatase and tensin homolog involved_in IMP (PMID:27919618) BHF-UCL
BHF-UCL
PMID:27919618 NCBI chr10:87,863,625...87,971,930
Ensembl chr10:87,862,638...87,971,930
JBrowse link
G SDHAF2 succinate dehydrogenase complex assembly factor 2 acts_upstream_of_or_within IMP (PMID:23983127) MGI
MGI
PMID:23983127 NCBI chr11:61,430,124...61,446,733
Ensembl chr11:61,430,042...61,446,733
JBrowse link
G SFRP1 secreted frizzled related protein 1 involved_in IDA (PMID:19095296) UniProt
UniProt
PMID:19095296 NCBI chr 8:41,261,962...41,309,473
Ensembl chr 8:41,261,962...41,309,473
JBrowse link
G SFRP2 secreted frizzled related protein 2 involved_in IDA (PMID:19095296) UniProt
UniProt
PMID:19095296 NCBI chr 4:153,780,591...153,789,083
Ensembl chr 4:153,780,591...153,789,083
JBrowse link
G SMAD7 SMAD family member 7 involved_in TAS
IC
(PMID:19018011)
(PMID:18762808)
BHF-UCL
BHF-UCL
PMID:18762808 PMID:19018011 NCBI chr18:48,919,853...48,950,965
Ensembl chr18:48,919,853...48,950,965
JBrowse link
G SPRED1 sprouty related EVH1 domain containing 1 involved_in ISS
IEA
UniProt
UniProt
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr15:38,252,087...38,357,249
Ensembl chr15:38,252,836...38,357,249
JBrowse link
G SPRED2 sprouty related EVH1 domain containing 2 involved_in ISS UniProt
UniProt
GO_REF:0000024 NCBI chr 2:65,307,425...65,432,599
Ensembl chr 2:65,310,851...65,432,637
JBrowse link
G SPRED3 sprouty related EVH1 domain containing 3 involved_in ISS UniProt
UniProt
GO_REF:0000024 NCBI chr19:38,388,697...38,399,587
Ensembl chr19:38,388,421...38,399,587
JBrowse link
G SPRY1 sprouty RTK signaling antagonist 1 involved_in ISS
IEA
UniProt
Ensembl
UniProt
GO_REF:0000024 GO_REF:0000107 NCBI chr 4:123,396,795...123,403,760
Ensembl chr 4:123,396,795...123,403,760
JBrowse link
G SPRY2 sprouty RTK signaling antagonist 2 involved_in ISS
IEA
UniProt
UniProt
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr13:80,335,976...80,341,126
Ensembl chr13:80,335,976...80,341,126
JBrowse link
G TBX5 T-box transcription factor 5 involved_in TAS (PMID:20299672) DFLAT
DFLAT
PMID:20299672 NCBI chr12:114,353,911...114,408,708
Ensembl chr12:114,353,911...114,408,442
JBrowse link
G TGFBR3 transforming growth factor beta receptor 3 acts_upstream_of_or_within ISO (MGI:3762085|PMID:17823118) MGI PMID:17823118 MGI:3762085 NCBI chr 1:91,680,343...91,906,002
Ensembl chr 1:91,680,343...91,906,335
JBrowse link
G TRIM62 tripartite motif containing 62 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5585203|PMID:24890125) Ensembl
Ensembl
MGI
PMID:24890125 GO_REF:0000107 MGI:5585203 NCBI chr 1:33,145,399...33,184,774
Ensembl chr 1:33,145,399...33,182,059
JBrowse link
G TSC2 TSC complex subunit 2 ISO RGD PMID:20813961 RGD:11568680 NCBI chr16:2,047,804...2,089,491
Ensembl chr16:2,047,967...2,089,491
JBrowse link
G USF3 upstream transcription factor family member 3 involved_in IMP (PMID:28011713) UniProt
UniProt
PMID:28011713 NCBI chr 3:113,648,385...113,696,657
Ensembl chr 3:113,648,385...113,696,646
JBrowse link
G VASN vasorin involved_in IMP (PMID:21170088) UniProt
UniProt
PMID:21170088 NCBI chr16:4,371,848...4,383,538
Ensembl chr16:4,371,848...4,383,538
JBrowse link
G VEGFA vascular endothelial growth factor A involved_in ISO (MGI:5502250|PMID:23863481) BHF-UCL PMID:23863481 MGI:5502250 NCBI chr 6:43,770,209...43,786,487
Ensembl chr 6:43,770,184...43,786,487
JBrowse link
G ZNF750 zinc finger protein 750 involved_in IMP (PMID:32042337) ARUK-UCL
ARUK-UCL
PMID:32042337 NCBI chr17:82,829,434...82,840,022
Ensembl chr17:82,829,434...82,840,022
JBrowse link
negative regulation of epithelial to mesenchymal transition involved in endocardial cushion formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NOG noggin involved_in ISS
IEA
BHF-UCL
Ensembl
BHF-UCL
GO_REF:0000024 GO_REF:0000107 NCBI chr17:56,593,699...56,595,611
Ensembl chr17:56,593,699...56,595,611
JBrowse link
G TGFB2 transforming growth factor beta 2 involved_in ISS BHF-UCL
BHF-UCL
GO_REF:0000024 NCBI chr 1:218,345,336...218,444,619
Ensembl chr 1:218,345,336...218,444,619
JBrowse link
negative regulation of neural crest formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FUZ fuzzy planar cell polarity protein involved_in ISS UniProt
UniProt
GO_REF:0000024 NCBI chr19:49,806,866...49,817,376
Ensembl chr19:49,806,866...49,817,376
JBrowse link
neural crest cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3703483|PMID:17067568)
(MGI:3612223|PMID:16368932)
Ensembl
Ensembl
MGI
PMID:16368932 PMID:17067568 GO_REF:0000107 MGI:3612223 MGI:3703483 NCBI chr15:57,953,429...58,065,711
Ensembl chr15:57,953,424...58,497,866
JBrowse link
G BMPR1A bone morphogenetic protein receptor type 1A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4366654|PMID:19793887) Ensembl
Ensembl
MGI
PMID:19793887 GO_REF:0000107 MGI:4366654 NCBI chr10:86,755,786...86,927,969
Ensembl chr10:86,756,601...86,932,825
JBrowse link
G CDH2 cadherin 2 involved_in ISS
IEA
UniProt
Ensembl
UniProt
GO_REF:0000024 GO_REF:0000107 NCBI chr18:27,932,878...28,177,130
Ensembl chr18:27,932,879...28,177,946
JBrowse link
G CYP26A1 cytochrome P450 family 26 subfamily A member 1 acts_upstream_of_or_within ISO (MGI:3703483|PMID:17067568) MGI PMID:17067568 MGI:3703483 NCBI chr10:93,073,475...93,077,885
Ensembl chr10:93,073,475...93,077,885
JBrowse link
G CYP26C1 cytochrome P450 family 26 subfamily C member 1 involved_in
acts_upstream_of_or_within
ISS
IEA
ISO
(MGI:3703483|PMID:17067568) BHF-UCL
Ensembl
BHF-UCL
MGI
PMID:17067568 GO_REF:0000024 GO_REF:0000107 MGI:3703483 NCBI chr10:93,060,798...93,069,540
Ensembl chr10:93,060,798...93,069,540
JBrowse link
G EDN1 endothelin 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1277800|PMID:9671575), (MGI:3510064|PMID:15327783) MGI
Ensembl
PMID:9671575 PMID:15327783 GO_REF:0000107 MGI:1277800 MGI:3510064 NCBI chr 6:12,256,463...12,297,194
Ensembl chr 6:12,290,361...12,297,194
JBrowse link
G EDNRA endothelin receptor type A acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1201717|PMID:9449664), (MGI:3056210|PMID:15306564)
(MGI:3510064|PMID:15327783)
MGI
Ensembl
PMID:9449664 PMID:15306564 PMID:15327783 GO_REF:0000107 MGI:1201717 MGI:3056210 MGI:3510064 NCBI chr 4:147,481,097...147,544,954
Ensembl chr 4:147,480,917...147,544,954
JBrowse link
G FAM172A family with sequence similarity 172 member A involved_in ISS
IEA
UniProt
Ensembl
UniProt
GO_REF:0000024 GO_REF:0000107 NCBI chr 5:93,615,130...94,111,699
Ensembl chr 5:93,617,725...94,111,699
JBrowse link
G FOXC1 forkhead box C1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3701735|PMID:16839542) Ensembl
Ensembl
MGI
PMID:16839542 GO_REF:0000107 MGI:3701735 NCBI chr 6:1,609,915...1,613,897
Ensembl chr 6:1,609,915...1,613,897
JBrowse link
G FOXC2 forkhead box C2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3701735|PMID:16839542) Ensembl
Ensembl
MGI
PMID:16839542 GO_REF:0000107 MGI:3701735 NCBI chr16:86,566,829...86,569,728
Ensembl chr16:86,566,829...86,569,728
JBrowse link
G HAND2 heart and neural crest derivatives expressed 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:1277800|PMID:9671575) MGI
Ensembl
PMID:9671575 GO_REF:0000107 MGI:1277800 NCBI chr 4:173,526,091...173,530,229
Ensembl chr 4:173,524,969...173,530,229
JBrowse link
G KBTBD8 kelch repeat and BTB domain containing 8 involved_in IMP (PMID:26399832) UniProt
UniProt
PMID:26399832 NCBI chr 3:66,998,307...67,011,210
Ensembl chr 3:66,998,307...67,011,210
JBrowse link
G KLHL12 kelch like family member 12 involved_in IMP (PMID:27716508) UniProt
UniProt
PMID:27716508 NCBI chr 1:202,891,116...202,928,628
Ensembl chr 1:202,891,116...202,928,636
JBrowse link
G MAPK1 mitogen-activated protein kinase 1 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3832113|PMID:18952847) MGI
Ensembl
PMID:18952847 GO_REF:0000107 MGI:3832113 NCBI chr22:21,759,657...21,867,680
Ensembl chr22:21,759,657...21,867,680
JBrowse link
G MAPK3 mitogen-activated protein kinase 3 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3832113|PMID:18952847) MGI
Ensembl
PMID:18952847 GO_REF:0000107 MGI:3832113 NCBI chr16:30,114,105...30,123,309
Ensembl chr16:30,114,105...30,123,506
JBrowse link
G NOLC1 nucleolar and coiled-body phosphoprotein 1 involved_in IMP (PMID:26399832) UniProt
UniProt
PMID:26399832 NCBI chr10:102,152,370...102,163,870
Ensembl chr10:102,152,176...102,163,871
JBrowse link
G NRG1 neuregulin 1 involved_in TAS (PMID:17432114) BHF-UCL
BHF-UCL
PMID:17432114 NCBI chr 8:31,639,245...32,774,046
Ensembl chr 8:31,639,222...32,855,666
JBrowse link
G PDCD6 programmed cell death 6 involved_in IMP (PMID:27716508) UniProt
UniProt
PMID:27716508 NCBI chr 5:271,646...314,974
Ensembl chr 5:271,621...314,974
JBrowse link
G PEF1 penta-EF-hand domain containing 1 involved_in IMP (PMID:27716508) UniProt
UniProt
PMID:27716508 NCBI chr 1:31,629,866...31,644,876
Ensembl chr 1:31,629,866...31,644,896
JBrowse link
G RDH10 retinol dehydrogenase 10 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3709664|PMID:17473173) Ensembl
Ensembl
MGI
PMID:17473173 GO_REF:0000107 MGI:3709664 NCBI chr 8:73,294,602...73,325,281
Ensembl chr 8:73,294,602...73,325,281
JBrowse link
G SNAI2 snail family transcriptional repressor 2 involved_in IMP (PMID:12444107) BHF-UCL
BHF-UCL
PMID:12444107 NCBI chr 8:48,917,598...48,921,429
Ensembl chr 8:48,917,598...48,921,740
JBrowse link
G SOX11 SRY-box transcription factor 11 involved_in ISS
IEA
UniProt
Ensembl
UniProt
GO_REF:0000024 GO_REF:0000107 NCBI chr 2:5,692,384...5,701,385
Ensembl chr 2:5,692,384...5,701,385
JBrowse link
G SOX8 SRY-box transcription factor 8 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr16:981,770...986,979
Ensembl chr16:981,770...986,979
JBrowse link
G SOX9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3613316|PMID:15691760) Ensembl
Ensembl
MGI
PMID:15691760 GO_REF:0000107 MGI:3613316 NCBI chr17:72,121,020...72,126,416
Ensembl chr17:72,121,020...72,126,416
JBrowse link
G TAPT1 transmembrane anterior posterior transformation 1 involved_in ISS UniProt
UniProt
GO_REF:0000024 NCBI chr 4:16,160,505...16,226,477
Ensembl chr 4:16,160,505...16,227,410
JBrowse link
G TCOF1 treacle ribosome biogenesis factor 1 involved_in IMP (PMID:26399832) UniProt
UniProt
PMID:26399832 NCBI chr 5:150,357,697...150,400,306
Ensembl chr 5:150,357,629...150,400,308
JBrowse link
G TFAP2A transcription factor AP-2 alpha acts_upstream_of_or_within ISO (MGI:80519|PMID:8622766) MGI PMID:8622766 MGI:80519 NCBI chr 6:10,396,677...10,419,659
Ensembl chr 6:10,393,186...10,419,659
JBrowse link
neural crest cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EDN1 endothelin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:12,256,463...12,297,194
Ensembl chr 6:12,290,361...12,297,194
JBrowse link
G EDNRA endothelin receptor type A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:147,481,097...147,544,954
Ensembl chr 4:147,480,917...147,544,954
JBrowse link
G EXT1 exostosin glycosyltransferase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5907444|PMID:26295701) Ensembl
Ensembl
MGI
PMID:26295701 GO_REF:0000107 MGI:5907444 NCBI chr 8:117,794,490...118,111,826
Ensembl chr 8:117,794,490...118,111,826
JBrowse link
G FBXL17 F-box and leucine rich repeat protein 17 involved_in ISS UniProt
UniProt
GO_REF:0000024 NCBI chr 5:107,859,035...108,382,098
Ensembl chr 5:107,859,035...108,382,098
JBrowse link
G FRZB frizzled related protein involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:10654605) Ensembl
Ensembl
BHF-UCL
PMID:10654605 GO_REF:0000107 NCBI chr 2:182,833,275...182,866,637
Ensembl chr 2:182,833,275...182,866,637
JBrowse link
G HTR2B 5-hydroxytryptamine receptor 2B involved_in ISS
IEA
UniProt
Ensembl
UniProt
GO_REF:0000024 GO_REF:0000107 NCBI chr 2:231,108,230...231,126,172
Ensembl chr 2:231,108,230...231,125,042
JBrowse link
G LRP6 LDL receptor related protein 6 involved_in IDA (PMID:11029007) BHF-UCL
BHF-UCL
PMID:11029007 NCBI chr12:12,116,025...12,267,044
Ensembl chr12:12,116,025...12,267,044
JBrowse link
G MEF2C myocyte enhancer factor 2C involved_in ISS (PMID:21610032) UniProt
UniProt
PMID:21610032 NCBI chr 5:88,717,117...88,904,105
Ensembl chr 5:88,717,117...88,904,257
JBrowse link
G OTUD5 OTU deubiquitinase 5 involved_in IMP (PMID:33523931) UniProt
UniProt
PMID:33523931 NCBI chr  X:48,922,024...48,960,783
Ensembl chr  X:48,922,024...48,958,386
JBrowse link
G SIX1 SIX homeobox 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr14:60,643,421...60,649,489
Ensembl chr14:60,643,421...60,658,259
JBrowse link
G SMAD4 SMAD family member 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4366654|PMID:19793887) Ensembl
Ensembl
MGI
PMID:19793887 GO_REF:0000107 MGI:4366654 NCBI chr18:51,030,213...51,085,042
Ensembl chr18:51,028,394...51,085,045
JBrowse link
G WNT10A Wnt family member 10A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3712614|PMID:17286598) Ensembl
Ensembl
MGI
PMID:17286598 GO_REF:0000107 MGI:3712614 NCBI chr 2:218,874,116...218,893,931
Ensembl chr 2:218,880,852...218,899,581
JBrowse link
neural crest cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EDN1 endothelin 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 6:12,256,463...12,297,194
Ensembl chr 6:12,290,361...12,297,194
JBrowse link
G EDNRA endothelin receptor type A involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 4:147,481,097...147,544,954
Ensembl chr 4:147,480,917...147,544,954
JBrowse link
G SFRP1 secreted frizzled related protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4437369|PMID:20130188) Ensembl
Ensembl
MGI
PMID:20130188 GO_REF:0000107 MGI:4437369 NCBI chr 8:41,261,962...41,309,473
Ensembl chr 8:41,261,962...41,309,473
JBrowse link
G WNT8A Wnt family member 8A involved_in ISS BHF-UCL
BHF-UCL
GO_REF:0000024 NCBI chr 5:138,077,367...138,092,900
Ensembl chr 5:138,083,990...138,092,365
JBrowse link
neural crest cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GSC goosecoid homeobox involved_in IMP (PMID:24290375) UniProt
UniProt
PMID:24290375 NCBI chr14:94,768,223...94,770,113
Ensembl chr14:94,768,223...94,770,113
JBrowse link
G SOX9 SRY-box transcription factor 9 involved_in ISS UniProt
UniProt
GO_REF:0000024 NCBI chr17:72,121,020...72,126,416
Ensembl chr17:72,121,020...72,126,416
JBrowse link
neural crest cell migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACVR1 activin A receptor type 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3045641|PMID:15226263) Ensembl
Ensembl
MGI
PMID:15226263 GO_REF:0000107 MGI:3045641 NCBI chr 2:157,736,446...157,876,330
Ensembl chr 2:157,736,251...157,876,330
JBrowse link
G ALX1 ALX homeobox 1 involved_in IEA InterPro
InterPro
GO_REF:0000002 NCBI chr12:85,280,220...85,301,784
Ensembl chr12:85,280,220...85,301,784
JBrowse link
G ANXA6 annexin A6 involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 5:151,100,706...151,157,779
Ensembl chr 5:151,100,706...151,157,785
JBrowse link
G CFL1 cofilin 1 acts_upstream_of_or_within ISO (MGI:3530675|PMID:15649475) MGI PMID:15649475 MGI:3530675 NCBI chr11:65,854,673...65,858,180
Ensembl chr11:65,823,022...65,862,026
JBrowse link
G CORO1C coronin 1C involved_in IBA
IMP
(PMID:21873635)
(PMID:25074804)
GO_Central
UniProt
GO_Central
UniProt
PMID:21873635 PMID:25074804 NCBI chr12:108,645,109...108,731,518
Ensembl chr12:108,645,109...108,731,526
JBrowse link
G EDN3 endothelin 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1267304|PMID:9624616) Ensembl
Ensembl
MGI
PMID:9624616 GO_REF:0000107 MGI:1267304 NCBI chr20:59,300,415...59,325,992
Ensembl chr20:59,300,443...59,325,992
JBrowse link
G EDNRB endothelin receptor type B involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1349495|PMID:10591209) Ensembl
Ensembl
MGI
PMID:10591209 GO_REF:0000107 MGI:1349495 NCBI chr13:77,895,481...77,975,527
Ensembl chr13:77,895,481...77,975,529
JBrowse link
G EFNB1 ephrin B1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3037600|PMID:15037550) Ensembl
Ensembl
MGI
PMID:15037550 GO_REF:0000107 MGI:3037600 NCBI chr  X:68,829,021...68,842,160
Ensembl chr  X:68,829,021...68,842,160
JBrowse link
G ERBB4 erb-b2 receptor tyrosine kinase 4 involved_in ISS
IEA
UniProt
Ensembl
UniProt
GO_REF:0000024 GO_REF:0000107 NCBI chr 2:211,375,717...212,538,802
Ensembl chr 2:211,375,717...212,538,841
JBrowse link
G FGF19 fibroblast growth factor 19 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3575218|PMID:15789410) MGI
Ensembl
Ensembl
PMID:15789410 GO_REF:0000107 MGI:3575218 NCBI chr11:69,698,238...69,704,022
Ensembl chr11:69,698,238...69,704,022
JBrowse link
G GBX2 gastrulation brain homeobox 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5478665|PMID:23144817)
(MGI:3588904|PMID:15996652), (MGI:4358009|PMID:19700621)
Ensembl
Ensembl
MGI
PMID:15996652 PMID:19700621 PMID:23144817 GO_REF:0000107 MGI:3588904 MGI:4358009 MGI:5478665 NCBI chr 2:236,165,236...236,168,386
Ensembl chr 2:236,165,236...236,168,386
JBrowse link
G GDNF glial cell derived neurotrophic factor acts_upstream_of_or_within IDA (PMID:15242795) MGI
MGI
PMID:15242795 NCBI chr 5:37,812,677...37,840,044
Ensembl chr 5:37,812,677...37,840,041
JBrowse link
G HIF1A hypoxia inducible factor 1 subunit alpha involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3607736|PMID:14659802) Ensembl
Ensembl
MGI
PMID:14659802 GO_REF:0000107 MGI:3607736 NCBI chr14:61,695,513...61,748,258
Ensembl chr14:61,695,513...61,748,259
JBrowse link
G HTR2B 5-hydroxytryptamine receptor 2B involved_in ISS
IEA
UniProt
Ensembl
UniProt
GO_REF:0000024 GO_REF:0000107 NCBI chr 2:231,108,230...231,126,172
Ensembl chr 2:231,108,230...231,125,042
JBrowse link
G ISL1 ISL LIM homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3640718|PMID:16687132) Ensembl
Ensembl
MGI
PMID:16687132 GO_REF:0000107 MGI:3640718 NCBI chr 5:51,383,448...51,394,730
Ensembl chr 5:51,383,448...51,394,730
JBrowse link
G KITLG KIT ligand involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1934508|PMID:11401406) Ensembl
Ensembl
MGI
PMID:11401406 GO_REF:0000107 MGI:1934508 NCBI chr12:88,492,793...88,580,471
Ensembl chr12:88,492,793...88,580,851
JBrowse link
G LAMA5 laminin subunit alpha 5 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3611396|PMID:16316641) Ensembl
Ensembl
MGI
PMID:16316641 GO_REF:0000107 MGI:3611396 NCBI chr20:62,309,060...62,367,318
Ensembl chr20:62,307,955...62,367,312
JBrowse link
G NRP2 neuropilin 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(MGI:3613099|PMID:16319111) MGI
Ensembl
PMID:16319111 GO_REF:0000107 MGI:3613099 NCBI chr 2:205,682,501...205,798,131
Ensembl chr 2:205,681,990...205,798,133
JBrowse link
G NRTN neurturin acts_upstream_of_or_within IDA (PMID:15242795) MGI
MGI
PMID:15242795 NCBI chr19:5,805,067...5,828,324
Ensembl chr19:5,805,067...5,828,324
JBrowse link
G OVOL2 ovo like zinc finger 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3618450|PMID:16423343) Ensembl
Ensembl
MGI
PMID:16423343 GO_REF:0000107 MGI:3618450 NCBI chr20:18,024,152...18,059,188
Ensembl chr20:17,956,979...18,059,188
JBrowse link
G PAX3 paired box 3 acts_upstream_of_or_within ISO (MGI:3056222|PMID:15384171) MGI PMID:15384171 MGI:3056222 NCBI chr 2:222,199,887...222,298,998
Ensembl chr 2:222,199,887...222,298,998
JBrowse link
G PAX6 paired box 6 ISO RGD PMID:9079035 RGD:8552342 NCBI chr11:31,789,026...31,817,961
Ensembl chr11:31,784,779...31,817,961
JBrowse link
G PHACTR4 phosphatase and actin regulator 4 involved_in IBA
IEA
ISS
(PMID:21873635) GO_Central
Ensembl
UniProt
GO_Central
UniProt
PMID:21873635 GO_REF:0000024 GO_REF:0000104 GO_REF:0000107 NCBI chr 1:28,369,740...28,500,364
Ensembl chr 1:28,369,582...28,500,364
JBrowse link
G RADIL Rap associating with DIL domain involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 7:4,797,055...4,883,716
Ensembl chr 7:4,797,055...4,883,716
JBrowse link
G RET ret proto-oncogene involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3617928|PMID:15242795) Ensembl
Ensembl
MGI
PMID:15242795 GO_REF:0000107 MGI:3617928 NCBI chr10:43,077,069...43,130,351
Ensembl chr10:43,077,064...43,130,351
JBrowse link
G SEMA3A semaphorin 3A involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 7:83,955,777...84,515,189
Ensembl chr 7:83,955,777...84,492,724
JBrowse link
G SEMA3B semaphorin 3B involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 3:50,267,652...50,277,546
Ensembl chr 3:50,267,558...50,277,546
JBrowse link
G SEMA3C semaphorin 3C involved_in
acts_upstream_of_or_within
IBA
IEA
ISO
(PMID:21873635)
(MGI:2149435|PMID:11688556)
GO_Central
GO_Central
Ensembl
MGI
PMID:11688556 PMID:21873635 GO_REF:0000107 MGI:2149435 NCBI chr 7:80,742,538...80,922,389
Ensembl chr 7:80,742,538...80,922,359
JBrowse link
G SEMA3D semaphorin 3D involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 7:84,995,192...85,250,243
Ensembl chr 7:84,995,553...85,187,056
JBrowse link
G SEMA3E semaphorin 3E involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 7:83,363,238...83,649,139
Ensembl chr 7:83,363,238...83,649,139
JBrowse link
G SEMA3F semaphorin 3F involved_in
acts_upstream_of_or_within
IBA
IEA
ISO
(PMID:21873635)
(MGI:3613099|PMID:16319111)
GO_Central
Ensembl
GO_Central
MGI
PMID:16319111 PMID:21873635 GO_REF:0000107 MGI:3613099 NCBI chr 3:50,155,058...50,189,075
Ensembl chr 3:50,155,045...50,189,075
JBrowse link
G SEMA3G semaphorin 3G involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 3:52,433,035...52,445,113
Ensembl chr 3:52,433,035...52,445,103
JBrowse link
G SEMA4A semaphorin 4A involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 1:156,149,672...156,177,746
Ensembl chr 1:156,147,366...156,177,752
JBrowse link
G SEMA4B semaphorin 4B involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr15:90,184,920...90,229,661
Ensembl chr15:90,160,604...90,229,679
JBrowse link
G SEMA4C semaphorin 4C involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 2:96,859,718...96,870,943
Ensembl chr 2:96,859,718...96,870,757
JBrowse link
G SEMA4D semaphorin 4D involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 9:89,360,787...89,498,113
Ensembl chr 9:89,360,787...89,498,130
JBrowse link
G SEMA4F ssemaphorin 4F involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 2:74,654,229...74,699,013
Ensembl chr 2:74,654,228...74,683,853
JBrowse link
G SEMA4G semaphorin 4G involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr10:100,969,503...100,985,618
Ensembl chr10:100,969,518...100,985,871
JBrowse link
G SEMA5A semaphorin 5A involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 5:9,035,030...9,546,121
Ensembl chr 5:9,035,033...9,546,075
JBrowse link
G SEMA5B semaphorin 5B involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 3:122,909,082...123,028,605
Ensembl chr 3:122,909,082...123,028,605
JBrowse link
G SEMA6A semaphorin 6A involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 5:116,443,555...116,574,823
Ensembl chr 5:116,443,555...116,574,823
JBrowse link
G SEMA6B semaphorin 6B involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr19:4,542,593...4,559,684
Ensembl chr19:4,542,593...4,581,776
JBrowse link
G SEMA6C semaphorin 6C involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr 1:151,131,707...151,148,408
Ensembl chr 1:151,131,685...151,146,631
JBrowse link
G SEMA6D semaphorin 6D involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr15:47,184,089...47,774,228
Ensembl chr15:47,184,101...47,774,228
JBrowse link
G SEMA7A semaphorin 7A (John Milton Hagen blood group) involved_in IBA (PMID:21873635) GO_Central
GO_Central
PMID:21873635 NCBI chr15:74,409,289...74,433,958
Ensembl chr15:74,409,289...74,433,958
JBrowse link
G SHH sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within
ISS
IEA
ISO
(MGI:3583396|PMID:15936751) UniProt
Ensembl
UniProt
MGI
PMID:15936751 GO_REF:0000024 GO_REF:0000107 MGI:3583396 NCBI chr 7:155,799,980...155,812,463
Ensembl chr 7:155,799,980...155,812,463
JBrowse link
G SMO smoothened, frizzled class receptor involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3640718|PMID:16687132) Ensembl
Ensembl
MGI
PMID:16687132 GO_REF:0000107 MGI:3640718 NCBI chr 7:129,188,633...129,213,548
Ensembl chr 7:129,188,633...129,213,545
JBrowse link
G SOX10 SRY-box transcription factor 10 involved_in IBA
IEA
(PMID:21873635) GO_Central
Ensembl
GO_Central
PMID:21873635 GO_REF:0000107 NCBI chr22:37,972,312...37,984,555
Ensembl chr22:37,970,686...37,987,422
JBrowse link
G SOX8 SRY-box transcription factor 8 involved_in ISS
IEA
UniProt
Ensembl
UniProt
GO_REF:0000024 GO_REF:0000107 NCBI chr16:981,770...986,979
Ensembl chr16:981,770...986,979
JBrowse link
G TBX1 T-box transcription factor 1 involved_in
acts_upstream_of_or_within
ISS
ISO
(MGI:4822099|PMID:20501333)
(MGI:3530686|PMID:15652707)
UniProt
UniProt
MGI
PMID:15652707 PMID:20501333 GO_REF:0000024 MGI:3530686 MGI:4822099 NCBI chr22:19,756,703...19,783,593
Ensembl chr22:19,756,703...19,783,593
JBrowse link
G ZEB2 zinc finger E-box binding homeobox 2 acts_upstream_of_or_within ISO (MGI:2450818|PMID:12522767) MGI PMID:12522767 MGI:2450818 NCBI chr 2:144,384,081...144,520,119
Ensembl chr 2:144,364,364...144,521,057
JBrowse link
neural crest cell migration involved in autonomic nervous system development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FN1 fibronectin 1 involved_in IDA (PMID:26571399) MGI
MGI
PMID:26571399 NCBI chr 2:215,360,865...215,436,068
Ensembl chr 2:215,360,440...215,436,073
JBrowse link
G NRP1 neuropilin 1 involved_in ISS
IEA
BHF-UCL
Ensembl
BHF-UCL
GO_REF:0000024 GO_REF:0000107 NCBI chr10:33,177,493...33,334,667
Ensembl chr10:33,177,492...33,336,262
JBrowse link
G NRP2 neuropilin 2 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 2:205,682,501...205,798,131
Ensembl chr 2:205,681,990...205,798,133
JBrowse link
G PHOX2B paired like homeobox 2B involved_in ISS
IEA
BHF-UCL
BHF-UCL
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr 4:41,744,082...41,748,725
Ensembl chr 4:41,744,082...41,748,725
JBrowse link
G SEMA3A semaphorin 3A involved_in ISS
IEA
BHF-UCL
BHF-UCL
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr 7:83,955,777...84,515,189
Ensembl chr 7:83,955,777...84,492,724
JBrowse link
G SEMA3F semaphorin 3F involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 3:50,155,058...50,189,075
Ensembl chr 3:50,155,045...50,189,075
JBrowse link
neural crest cell migration involved in heart formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FOLR1 folate receptor alpha involved_in ISS
IEA
BHF-UCL
BHF-UCL
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr11:72,189,709...72,196,323
Ensembl chr11:72,189,558...72,196,323
JBrowse link
neural crest cell migration involved in sympathetic nervous system development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SEMA3A semaphorin 3A involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 7:83,955,777...84,515,189
Ensembl chr 7:83,955,777...84,492,724
JBrowse link
neural crest formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHRD chordin involved_in ISO (MGI:3721005|PMID:17685487) MGI PMID:17685487 MGI:3721005 NCBI chr 3:184,380,054...184,390,739
Ensembl chr 3:184,380,073...184,390,736
JBrowse link
G KBTBD8 kelch repeat and BTB domain containing 8 involved_in IMP (PMID:26399832) UniProt
UniProt
PMID:26399832 NCBI chr 3:66,998,307...67,011,210
Ensembl chr 3:66,998,307...67,011,210
JBrowse link
G KLHL12 kelch like family member 12 involved_in IMP (PMID:27716508) UniProt
UniProt
PMID:27716508 NCBI chr 1:202,891,116...202,928,628
Ensembl chr 1:202,891,116...202,928,636
JBrowse link
G LRP6 LDL receptor related protein 6 involved_in IDA (PMID:11029007) BHF-UCL
BHF-UCL
PMID:11029007 NCBI chr12:12,116,025...12,267,044
Ensembl chr12:12,116,025...12,267,044
JBrowse link
G NOLC1 nucleolar and coiled-body phosphoprotein 1 involved_in IMP (PMID:26399832) UniProt
UniProt
PMID:26399832 NCBI chr10:102,152,370...102,163,870
Ensembl chr10:102,152,176...102,163,871
JBrowse link
G PDCD6 programmed cell death 6 involved_in IMP (PMID:27716508) UniProt
UniProt
PMID:27716508 NCBI chr 5:271,646...314,974
Ensembl chr 5:271,621...314,974
JBrowse link
G PEF1 penta-EF-hand domain containing 1 involved_in IMP (PMID:27716508) UniProt
UniProt
PMID:27716508 NCBI chr 1:31,629,866...31,644,876
Ensembl chr 1:31,629,866...31,644,896
JBrowse link
G POLR1B RNA polymerase I subunit B involved_in ISS UniProt
UniProt
GO_REF:0000024 NCBI chr 2:112,542,036...112,579,818
Ensembl chr 2:112,541,915...112,579,818
JBrowse link
G TCOF1 treacle ribosome biogenesis factor 1 involved_in IMP (PMID:26399832) UniProt
UniProt
PMID:26399832 NCBI chr 5:150,357,697...150,400,306
Ensembl chr 5:150,357,629...150,400,308
JBrowse link
positive regulation of cardiac endothelial to mesenchymal transition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GATA5 GATA binding protein 5 involved_in ISS
IEA
BHF-UCL
BHF-UCL
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr20:62,463,497...62,475,995
Ensembl chr20:62,463,497...62,475,995
JBrowse link
positive regulation of cardiac epithelial to mesenchymal transition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G JAG1 jagged canonical Notch ligand 1 involved_in ISS BHF-UCL
BHF-UCL
GO_REF:0000024 NCBI chr20:10,637,684...10,673,999
Ensembl chr20:10,637,684...10,673,999
JBrowse link
G NOTCH1 notch receptor 1 involved_in ISS
IEA
BHF-UCL
Ensembl
BHF-UCL
GO_REF:0000024 GO_REF:0000107 NCBI chr 9:136,494,433...136,546,048
Ensembl chr 9:136,494,433...136,546,048
JBrowse link
G TGFB2 transforming growth factor beta 2 involved_in ISO (MGI:5300829|PMID:22186728) UniProt PMID:22186728 MGI:5300829 NCBI chr 1:218,345,336...218,444,619
Ensembl chr 1:218,345,336...218,444,619
JBrowse link
positive regulation of cardiac neural crest cell migration involved in outflow tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP4 bone morphogenetic protein 4 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr14:53,949,736...53,956,891
Ensembl chr14:53,949,736...53,958,761
JBrowse link
G BMP7 bone morphogenetic protein 7 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr20:57,168,753...57,266,641
Ensembl chr20:57,168,753...57,266,641
JBrowse link
G SEMA3C semaphorin 3C involved_in ISS
IEA
BHF-UCL
Ensembl
BHF-UCL
GO_REF:0000024 GO_REF:0000107 NCBI chr 7:80,742,538...80,922,389
Ensembl chr 7:80,742,538...80,922,359
JBrowse link
positive regulation of endocardial cushion to mesenchymal transition involved in heart valve formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TWIST1 twist family bHLH transcription factor 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 7:19,113,047...19,117,636
Ensembl chr 7:19,020,991...19,117,636
JBrowse link
positive regulation of epithelial to mesenchymal transition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGER advanced glycosylation end-product specific receptor ISO RGD PMID:21743278 RGD:7243870 NCBI chr 6:32,180,969...32,184,380
Ensembl chr 6:32,180,968...32,184,322
JBrowse link
G ALX1 ALX homeobox 1 involved_in IMP (PMID:23288509) UniProt
UniProt
PMID:23288509 NCBI chr12:85,280,220...85,301,784
Ensembl chr12:85,280,220...85,301,784
JBrowse link
G AXIN2 axin 2 involved_in IMP (PMID:17072303) BHF-UCL
BHF-UCL
PMID:17072303 NCBI chr17:65,528,563...65,561,648
Ensembl chr17:65,528,563...65,561,648
JBrowse link
G BAMBI BMP and activin membrane bound inhibitor involved_in IMP (PMID:19328798) BHF-UCL
BHF-UCL
PMID:19328798 NCBI chr10:28,677,521...28,682,932
Ensembl chr10:28,677,510...28,682,932
JBrowse link
G BCL9L BCL9 like involved_in IMP (PMID:19328798) BHF-UCL
BHF-UCL
PMID:19328798 NCBI chr11:118,896,136...118,926,071
Ensembl chr11:118,893,875...118,925,926
JBrowse link
G BMP2 bone morphogenetic protein 2 involved_in
acts_upstream_of_or_within
IDA
IEA
ISO
(PMID:20890042)
(MGI:3611958|PMID:16314491)
BHF-UCL
BHF-UCL
Ensembl
MGI
PMID:16314491 PMID:20890042 GO_REF:0000107 MGI:3611958 NCBI chr20:6,767,686...6,780,246
Ensembl chr20:6,767,686...6,780,246
JBrowse link
G BMP4 bone morphogenetic protein 4 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr14:53,949,736...53,956,891
Ensembl chr14:53,949,736...53,958,761
JBrowse link
G BMP7 bone morphogenetic protein 7 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr20:57,168,753...57,266,641
Ensembl chr20:57,168,753...57,266,641
JBrowse link
G COL1A1 collagen type I alpha 1 chain involved_in IDA (PMID:20018240) UniProt
UniProt
PMID:20018240 NCBI chr17:50,184,096...50,201,649
Ensembl chr17:50,184,101...50,201,632
JBrowse link
G CRB2 crumbs cell polarity complex component 2 involved_in ISS
IEA
UniProt
CAFA
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr 9:123,354,065...123,380,326
Ensembl chr 9:123,356,170...123,380,324
JBrowse link
G CTNNB1 catenin beta 1 acts_upstream_of_or_within IGI (PMID:23983127) MGI
MGI
PMID:23983127 NCBI chr 3:41,199,422...41,240,445
Ensembl chr 3:41,194,741...41,260,096
JBrowse link
G DAB2 DAB adaptor protein 2 involved_in IDA (PMID:15734730) UniProt
UniProt
PMID:15734730 NCBI chr 5:39,371,677...39,424,980
Ensembl chr 5:39,371,675...39,462,300
JBrowse link
G EZH2 enhancer of zeste 2 polycomb repressive complex 2 subunit involved_in IDA (PMID:20154697) UniProt
UniProt
PMID:20154697 NCBI chr 7:148,807,374...148,884,344
Ensembl chr 7:148,807,257...148,884,321
JBrowse link
G FERMT2 FERM domain containing kindlin 2 involved_in IDA (PMID:24226523) ARUK-UCL
ARUK-UCL
PMID:24226523 NCBI chr14:52,857,271...52,951,050
Ensembl chr14:52,857,268...52,952,435
JBrowse link
G FOXC1 forkhead box C1 involved_in IMP (PMID:22991501) UniProt
UniProt
PMID:22991501 NCBI chr 6:1,609,915...1,613,897
Ensembl chr 6:1,609,915...1,613,897
JBrowse link
G GCNT2 glucosaminyl (N-acetyl) transferase 2 (I blood group) involved_in IMP (PMID:21750175) UniProt
UniProt
PMID:21750175 NCBI chr 6:10,521,283...10,629,368
Ensembl chr 6:10,492,223...10,629,368
JBrowse link
G GLIPR2 GLI pathogenesis related 2 involved_in IDA (PMID:23516513) UniProt
UniProt
PMID:23516513 NCBI chr 9:36,136,536...36,163,913
Ensembl chr 9:36,136,536...36,163,913
JBrowse link
G HDAC2 histone deacetylase 2 involved_in IEA
ISO
Ensembl
Ensembl
RGD
PMID:19553350 GO_REF:0000107 RGD:9590229 NCBI chr 6:113,933,028...113,971,148
Ensembl chr 6:113,933,028...114,011,308
JBrowse link
G IL1B interleukin 1 beta involved_in IDA (PMID:25204733) BHF-UCL
BHF-UCL
PMID:25204733 NCBI chr 2:112,829,751...112,836,843
Ensembl chr 2:112,829,751...112,836,816
JBrowse link
G IL6 interleukin 6 involved_in IDA (PMID:25916550) ARUK-UCL
ARUK-UCL
PMID:25916550 NCBI chr 7:22,725,889...22,732,002
Ensembl chr 7:22,725,884...22,732,002
JBrowse link
G ISL1 ISL LIM homeobox 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 5:51,383,448...51,394,730
Ensembl chr 5:51,383,448...51,394,730
JBrowse link
G LEF1 lymphoid enhancer binding factor 1 involved_in IMP (PMID:20018240) UniProt
UniProt
PMID:20018240 NCBI chr 4:108,047,548...108,168,932
Ensembl chr 4:108,047,545...108,168,956
JBrowse link
G LOXL2 lysyl oxidase like 2 involved_in IMP (PMID:24239292) UniProt
UniProt
PMID:24239292 NCBI chr 8:23,296,897...23,404,120
Ensembl chr 8:23,296,897...23,425,328
JBrowse link
G MDK midkine involved_in IMP (PMID:18469519) UniProt
UniProt
PMID:18469519 NCBI chr11:46,380,784...46,383,837
Ensembl chr11:46,380,756...46,383,837
JBrowse link
G MTOR mechanistic target of rapamycin kinase involved_in IMP (PMID:27919618) BHF-UCL
BHF-UCL
PMID:27919618 NCBI chr 1:11,106,535...11,273,497
Ensembl chr 1:11,106,535...11,262,551
JBrowse link
G MYOCD myocardin involved_in ISO PMID:23270756 BHF-UCL PMID:23270756 RGD:13210526 NCBI chr17:12,665,890...12,768,949
Ensembl chr17:12,665,890...12,768,949
JBrowse link
G NOTCH1 notch receptor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:136,494,433...136,546,048
Ensembl chr 9:136,494,433...136,546,048
JBrowse link
G OLFM1 olfactomedin 1 involved_in ISS AgBase
AgBase
GO_REF:0000024 NCBI chr 9:135,075,505...135,121,184
Ensembl chr 9:135,075,422...135,121,180
JBrowse link
G PDPN podoplanin involved_in IMP
IBA
(PMID:17046996), (PMID:21376833)
(PMID:21873635)
UniProt
UniProt
GO_Central
GO_Central
PMID:17046996 PMID:21376833 PMID:21873635 NCBI chr 1:13,583,757...13,617,957
Ensembl chr 1:13,583,465...13,617,957
JBrowse link
G RGCC regulator of cell cycle involved_in IMP
IDA
(PMID:19158077)
(PMID:21307346)
BHF-UCL
BHF-UCL
PMID:19158077 PMID:21307346 NCBI chr13:41,457,411...41,470,876
Ensembl chr13:41,457,550...41,470,871
JBrowse link
G SDCBP syndecan binding protein involved_in IMP (PMID:25893292) UniProt
UniProt
PMID:25893292 NCBI chr 8:58,553,261...58,582,860
Ensembl chr 8:58,552,924...58,582,859
JBrowse link
G SERPINB3 serpin family B member 3 involved_in IMP (PMID:20527027) UniProt
UniProt
PMID:20527027 NCBI chr18:63,655,197...63,661,893
Ensembl chr18:63,655,197...63,661,893
JBrowse link
G SMAD2 SMAD family member 2 involved_in ISS
IEA
BHF-UCL
BHF-UCL
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr18:47,808,957...47,931,188
Ensembl chr18:47,808,957...47,931,146
JBrowse link
G SMAD3 SMAD family member 3 involved_in IMP
IDA
(PMID:18505915)
(PMID:21307346)
BHF-UCL
BHF-UCL
PMID:18505915 PMID:21307346 NCBI chr15:67,065,602...67,195,195
Ensembl chr15:67,063,763...67,195,173
JBrowse link
G SMAD4 SMAD family member 4 involved_in ISS
IEA
BHF-UCL
Ensembl
BHF-UCL
GO_REF:0000024 GO_REF:0000107 NCBI chr18:51,030,213...51,085,042
Ensembl chr18:51,028,394...51,085,045
JBrowse link
G SNAI1 snail family transcriptional repressor 1 involved_in IMP
IEA
ISS
TAS
(PMID:20018240), (PMID:23288509)
(PMID:17072303)
UniProt
Ensembl
UniProt
BHF-UCL
BHF-UCL
PMID:17072303 PMID:20018240 PMID:23288509 GO_REF:0000024 GO_REF:0000107 NCBI chr20:49,982,980...49,988,886
Ensembl chr20:49,982,980...49,988,886
JBrowse link
G TBX20 T-box transcription factor 20 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 7:35,199,936...35,254,100
Ensembl chr 7:35,202,430...35,254,100
JBrowse link
G TGFB1 transforming growth factor beta 1 involved_in
acts_upstream_of_or_within
NAS
IEA
IDA
ISO
(PMID:21319131)
(PMID:17999987), (PMID:18505915)
(MGI:3821807|PMID:18794329)
BHF-UCL
Ensembl
BHF-UCL
MGI
Ensembl
PMID:17999987 PMID:18505915 PMID:18794329 PMID:21319131 GO_REF:0000107 MGI:3821807 NCBI chr19:41,330,323...41,353,922
Ensembl chr19:41,301,587...41,353,922
JBrowse link
G TGFB1I1 transforming growth factor beta 1 induced transcript 1 involved_in IDA (PMID:18762808) BHF-UCL
BHF-UCL
PMID:18762808 NCBI chr16:31,472,152...31,477,960
Ensembl chr16:31,471,585...31,477,960
JBrowse link
G TGFB2 transforming growth factor beta 2 involved_in IDA (PMID:17999987), (PMID:18505915) BHF-UCL
BHF-UCL
PMID:17999987 PMID:18505915 NCBI chr 1:218,345,336...218,444,619
Ensembl chr 1:218,345,336...218,444,619
JBrowse link
G TGFB3 transforming growth factor beta 3 involved_in ISS
IDA
(PMID:18505915), (PMID:18718461) BHF-UCL
BHF-UCL
PMID:18505915 PMID:18718461 GO_REF:0000024 NCBI chr14:75,958,097...75,983,011
Ensembl chr14:75,958,097...75,983,011
JBrowse link
G TGFBR1 transforming growth factor beta receptor 1 involved_in ISS
IEA
BHF-UCL
Ensembl
BHF-UCL
GO_REF:0000024 GO_REF:0000107 NCBI chr 9:99,104,038...99,154,192
Ensembl chr 9:99,104,038...99,154,192
JBrowse link
G TGFBR2 transforming growth factor beta receptor 2 involved_in IDA (PMID:26459119) BHF-UCL
BHF-UCL
PMID:26459119 NCBI chr 3:30,606,472...30,694,142
Ensembl chr 3:30,606,601...30,694,142
JBrowse link
G TIAM1 TIAM Rac1 associated GEF 1 involved_in NAS (PMID:17086355) BHF-UCL
BHF-UCL
PMID:17086355 NCBI chr21:31,118,418...31,559,977
Ensembl chr21:31,118,416...31,559,977
JBrowse link
G TWIST1 twist family bHLH transcription factor 1 involved_in IMP
IEA
(PMID:18297062) BHF-UCL
Ensembl
BHF-UCL
PMID:18297062 GO_REF:0000107 NCBI chr 7:19,113,047...19,117,636
Ensembl chr 7:19,020,991...19,117,636
JBrowse link
G WWTR1 WW domain containing transcription regulator 1 involved_in IDA (PMID:18227151) UniProt
UniProt
PMID:18227151 NCBI chr 3:149,517,235...149,724,788
Ensembl chr 3:149,517,235...149,736,714
JBrowse link
G ZNF703 zinc finger protein 703 involved_in ISS
IEA
UniProt
UniProt
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr 8:37,695,782...37,700,019
Ensembl chr 8:37,695,782...37,700,019
JBrowse link
positive regulation of epithelial to mesenchymal transition involved in endocardial cushion formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACVR1 activin A receptor type 1 involved_in ISS
IEA
BHF-UCL
Ensembl
BHF-UCL
GO_REF:0000024 GO_REF:0000107 NCBI chr 2:157,736,446...157,876,330
Ensembl chr 2:157,736,251...157,876,330
JBrowse link
G ENG endoglin involved_in ISS
IEA
BHF-UCL
BHF-UCL
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr 9:127,815,012...127,854,773
Ensembl chr 9:127,815,013...127,854,658
JBrowse link
G TGFB2 transforming growth factor beta 2 involved_in ISS BHF-UCL
BHF-UCL
GO_REF:0000024 NCBI chr 1:218,345,336...218,444,619
Ensembl chr 1:218,345,336...218,444,619
JBrowse link
G TGFBR1 transforming growth factor beta receptor 1 involved_in ISS
IEA
BHF-UCL
BHF-UCL
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr 9:99,104,038...99,154,192
Ensembl chr 9:99,104,038...99,154,192
JBrowse link
G TGFBR2 transforming growth factor beta receptor 2 involved_in ISS
IEA
BHF-UCL
BHF-UCL
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chr 3:30,606,472...30,694,142
Ensembl chr 3:30,606,601...30,694,142
JBrowse link
regulation of cardiac neural crest cell migration involved in outflow tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ENG endoglin NOT|involved_in ISS BHF-UCL
BHF-UCL
GO_REF:0000024 NCBI chr 9:127,815,012...127,854,773
Ensembl chr 9:127,815,013...127,854,658
JBrowse link
regulation of epithelial to mesenchymal transition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CLASP1 cytoplasmic linker associated protein 1 involved_in IMP (PMID:23940118) UniProt
UniProt
PMID:23940118 NCBI chr 2:121,337,776...121,649,462
Ensembl chr 2:121,337,776...121,649,476
JBrowse link
G CLASP2 cytoplasmic linker associated protein 2 involved_in IMP (PMID:23940118) UniProt
UniProt
PMID:23940118 NCBI chr 3:33,496,245...33,718,356
Ensembl chr 3:33,496,245...33,718,356
JBrowse link
G DAG1 dystroglycan 1 involved_in IMP (PMID:23940118) UniProt
UniProt
PMID:23940118 NCBI chr 3:49,468,703...49,535,618
Ensembl chr 3:49,468,703...49,535,618
JBrowse link
G ELL3 elongation factor for RNA polymerase II 3 involved_in ISS
IEA
UniProt
Ensembl
UniProt
GO_REF:0000024 GO_REF:0000107 NCBI chr15:43,772,620...43,776,966
Ensembl chr15:43,772,605...43,777,315
JBrowse link
G EPHA3 EPH receptor A3 involved_in ISS UniProt
UniProt
GO_REF:0000024 NCBI chr 3:89,107,621...89,482,134
Ensembl chr 3:89,107,621...89,482,134
JBrowse link
G GREM1 gremlin 1, DAN family BMP antagonist involved_in IMP (PMID:16816361) UniProt
UniProt
PMID:16816361 NCBI chr15:32,718,004...32,745,106
Ensembl chr15:32,718,004...32,745,106
JBrowse link
G MCRIP1 MAPK regulated corepressor interacting protein 1 involved_in IDA (PMID:25728771) UniProt
UniProt
PMID:25728771 NCBI chr17:81,822,361...81,833,291
Ensembl chr17:81,822,361...81,833,302
JBrowse link
G PHLDB1 pleckstrin homology like domain family B member 1 involved_in IMP (PMID:23940118) UniProt
UniProt
PMID:23940118 NCBI chr11:118,606,296...118,658,028
Ensembl chr11:118,606,440...118,658,031
JBrowse link
G PHLDB2 pleckstrin homology like domain family B member 2 involved_in IMP (PMID:23940118) UniProt
UniProt
PMID:23940118 NCBI chr 3:111,732,496...111,976,517
Ensembl chr 3:111,732,497...111,976,517
JBrowse link
G POFUT2 protein O-fucosyltransferase 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4838381|PMID:20637190) Ensembl
Ensembl
MGI
PMID:20637190 GO_REF:0000107 MGI:4838381 NCBI chr21:45,263,928...45,287,914
Ensembl chr21:45,263,928...45,287,898
JBrowse link
G SMAD7 SMAD family member 7 involved_in IMP (PMID:24887517) BHF-UCL
BHF-UCL
PMID:24887517 NCBI chr18:48,919,853...48,950,965
Ensembl chr18:48,919,853...48,950,965
JBrowse link
G TGFBR1 transforming growth factor beta receptor 1 involved_in ISS AgBase
AgBase
GO_REF:0000024 NCBI chr 9:99,104,038...99,154,192
Ensembl chr 9:99,104,038...99,154,192
JBrowse link
G TIAM1 TIAM Rac1 associated GEF 1 involved_in IDA (PMID:20826792) BHF-UCL
BHF-UCL
PMID:20826792 NCBI chr21:31,118,418...31,559,977
Ensembl chr21:31,118,416...31,559,977
JBrowse link
regulation of epithelial to mesenchymal transition involved in endocardial cushion formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TGFB1 transforming growth factor beta 1 NOT|involved_in ISS BHF-UCL
BHF-UCL
GO_REF:0000024 NCBI chr19:41,330,323...41,353,922
Ensembl chr19:41,301,587...41,353,922
JBrowse link
G TGFB3 transforming growth factor beta 3 NOT|involved_in ISS BHF-UCL
BHF-UCL
GO_REF:0000024 NCBI chr14:75,958,097...75,983,011
Ensembl chr14:75,958,097...75,983,011
JBrowse link
regulation of neural crest cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMPR1A bone morphogenetic protein receptor type 1A NOT|involved_in ISS BHF-UCL
BHF-UCL
GO_REF:0000024 NCBI chr10:86,755,786...86,927,969
Ensembl chr10:86,756,601...86,932,825
JBrowse link
regulation of neural crest cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMPR1A bone morphogenetic protein receptor type 1A NOT|involved_in ISO (MGI:3040576|PMID:15073157) BHF-UCL PMID:15073157 MGI:3040576 NCBI chr10:86,755,786...86,927,969
Ensembl chr10:86,756,601...86,932,825
JBrowse link
ventral trunk neural crest cell migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NRP1 neuropilin 1 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr10:33,177,493...33,334,667
Ensembl chr10:33,177,492...33,336,262
JBrowse link
G NRP2 neuropilin 2 involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 2:205,682,501...205,798,131
Ensembl chr 2:205,681,990...205,798,133
JBrowse link
G SEMA3A semaphorin 3A involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 7:83,955,777...84,515,189
Ensembl chr 7:83,955,777...84,492,724
JBrowse link
G SEMA3F semaphorin 3F involved_in IEA Ensembl
Ensembl
GO_REF:0000107 NCBI chr 3:50,155,058...50,189,075
Ensembl chr 3:50,155,045...50,189,075
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18661
    cellular process 17546
      cellular developmental process 4905
        cell differentiation 4798
          mesenchymal cell differentiation 255
            cardiac endothelial to mesenchymal transition + 2
            epithelial to mesenchymal transition + 166
            mesenchymal cell development + 98
            mesenchymal cell differentiation involved in bone development 2
            mesenchymal cell differentiation involved in lung development 2
            mesenchymal cell differentiation involved in mammary gland development 0
            mesenchymal cell differentiation involved in renal system development + 8
            mesenchymal cell differentiation involved in salivary gland development 0
            mesenchymal cell fate commitment 1
            neural crest cell differentiation + 104
Path 2
Term Annotations click to browse term
  biological_process 18661
    developmental process 7352
      anatomical structure development 6678
        multicellular organism development 6047
          system development 5693
            animal organ development 4337
              mesenchyme development 323
                mesenchymal cell differentiation 255
                  cardiac endothelial to mesenchymal transition + 2
                  epithelial to mesenchymal transition + 166
                  mesenchymal cell development + 98
                  mesenchymal cell differentiation involved in bone development 2
                  mesenchymal cell differentiation involved in lung development 2
                  mesenchymal cell differentiation involved in mammary gland development 0
                  mesenchymal cell differentiation involved in renal system development + 8
                  mesenchymal cell differentiation involved in salivary gland development 0
                  mesenchymal cell fate commitment 1
                  neural crest cell differentiation + 104
paths to the root