Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:skeletal muscle fiber development
go back to main search page
Accession:GO:0048741 term browser browse the term
Definition:The process whose specific outcome is the progression of the skeletal muscle fiber over time, from its formation to the mature structure. Muscle fibers are formed by the maturation of myotubes. They can be classed as slow, intermediate/fast or fast.
Synonyms:exact_synonym: skeletal muscle fibre development;   skeletal myofiber development;   skeletal myofibre development

GViewer not supported for the selected species.

show annotations for term's descendants           Sort by:
skeletal muscle fiber development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acta1 actin alpha 1, skeletal muscle involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936484:20,236,320...20,239,385
Ensembl chrNW_004936484:20,236,320...20,239,430 		JBrowse link
G Actn1 actinin alpha 1 involved_in ISS AgBase GO_REF:0000024 NCBI chrNW_004936495:12,124,489...12,217,223
Ensembl chrNW_004936495:12,124,443...12,217,242 		JBrowse link
G Bcl2 BCL2 apoptosis regulator acts_upstream_of IEA Ensembl GO_REF:0000107 NCBI chrNW_004936497:2,209,136...2,373,580
Ensembl chrNW_004936497:2,210,334...2,210,921 		JBrowse link
G Bscl2 BSCL2 lipid droplet biogenesis associated, seipin involved_in ISO (PMID:30735131) MGI PMID:30735131 NCBI chrNW_004936581:567,426...576,859
Ensembl chrNW_004936581:567,662...578,267 		JBrowse link
G Cacna1s calcium voltage-gated channel subunit alpha1 S acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936567:3,269,283...3,331,858
Ensembl chrNW_004936567:3,269,355...3,331,460 		JBrowse link
G Cav2 caveolin 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936589:2,553,932...2,561,186
Ensembl chrNW_004936589:2,552,477...2,561,569 		JBrowse link
G Col6a1 collagen type VI alpha 1 chain acts_upstream_of_or_within ISO (PMID:21037586) MGI PMID:21037586 NCBI chrNW_004936778:515,600...530,828 JBrowse link
G Dner delta/notch like EGF repeat containing acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936525:6,734,924...7,037,947
Ensembl chrNW_004936525:6,735,049...7,037,042 		JBrowse link
G Egr3 early growth response 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936555:6,347,446...6,393,784
Ensembl chrNW_004936555:6,356,691...6,393,825
Ensembl chrNW_004936555:6,356,691...6,393,825 		JBrowse link
G Gpx1 glutathione peroxidase 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936529:997,943...999,123
Ensembl chrNW_004936529:998,150...998,987 		JBrowse link
G Homer1 homer scaffold protein 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936549:7,189,588...7,320,117
Ensembl chrNW_004936549:7,188,850...7,320,312 		JBrowse link
G Kel Kell metallo-endopeptidase (Kell blood group) acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936527:406,061...431,142
Ensembl chrNW_004936527:406,132...427,186 		JBrowse link
G Klhl40 kelch like family member 40 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:24960163) MGI
TreeGrafter		 PMID:24960163 GO_REF:0000118 NCBI chrNW_004936695:2,417,938...2,424,622
Ensembl chrNW_004936695:2,414,573...2,424,702 		JBrowse link
G Large1 LARGE xylosyl- and glucuronyltransferase 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936492:6,160,979...6,657,491
Ensembl chrNW_004936492:6,289,517...6,659,465 		JBrowse link
G Lmod3 leiomodin 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936603:1,510,330...1,520,741
Ensembl chrNW_004936603:1,510,330...1,520,911 		JBrowse link
G LOC101957084 plectin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936470:8,194,124...8,252,139
Ensembl chrNW_004936470:8,216,205...8,250,978 		JBrowse link
G Myod1 myogenic differentiation 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936528:1,407,187...1,409,683
Ensembl chrNW_004936528:1,407,661...1,409,573 		JBrowse link
G Myog myogenin acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936567:1,507,042...1,509,814
Ensembl chrNW_004936567:1,507,042...1,509,815 		JBrowse link
G Myorg myogenesis regulating glycosidase (putative) involved_in
acts_upstream_of_or_within		 IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936524:2,472,611...2,494,478
Ensembl chrNW_004936524:2,472,624...2,492,768
Ensembl chrNW_004936524:2,472,624...2,492,768 		JBrowse link
G Nfatc3 nuclear factor of activated T cells 3 acts_upstream_of_or_within ISO (PMID:11254352) MGI PMID:11254352 NCBI chrNW_004936475:18,462,424...18,557,832
Ensembl chrNW_004936475:18,462,298...18,555,220 		JBrowse link
G P2rx2 purinergic receptor P2X 2 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936660:2,570,627...2,574,081
Ensembl chrNW_004936660:2,570,625...2,573,296 		JBrowse link
G Ppp3ca protein phosphatase 3 catalytic subunit alpha involved_in
acts_upstream_of_or_within		 ISO
IEA		 (PMID:12773574) UniProt
Ensembl		 PMID:12773574 GO_REF:0000107 NCBI chrNW_004936520:1,987,989...2,146,473
Ensembl chrNW_004936520:1,987,045...2,146,540 		JBrowse link
G Ppp3cb protein phosphatase 3 catalytic subunit beta involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936521:5,576,705...5,614,738
Ensembl chrNW_004936521:5,575,996...5,615,370 		JBrowse link
G Rcan1 regulator of calcineurin 1 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936500:7,942,099...7,950,256
Ensembl chrNW_004936500:7,942,133...7,950,271 		JBrowse link
G Ryr1 ryanodine receptor 1 involved_in ISO (PMID:18003898) UniProt PMID:18003898 NCBI chrNW_004936801:1,185,615...1,298,416
Ensembl chrNW_004936801:1,185,733...1,298,289 		JBrowse link
G Selenon selenoprotein N involved_in
acts_upstream_of_or_within		 IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936474:10,381,646...10,396,638
Ensembl chrNW_004936474:10,381,743...10,394,502 		JBrowse link
G Six1 SIX homeobox 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936495:4,839,496...4,842,906
Ensembl chrNW_004936495:4,838,051...4,842,994 		JBrowse link
G Ski SKI proto-oncogene acts_upstream_of_or_within ISO (PMID:9284043) MGI PMID:9284043 NCBI chrNW_004936737:1,223,653...1,274,664
Ensembl chrNW_004936737:1,222,341...1,276,631 		JBrowse link
G Smo smoothened, frizzled class receptor acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936579:5,893,064...5,917,021
Ensembl chrNW_004936579:5,892,542...5,917,281 		JBrowse link
G Spg11 SPG11 vesicle trafficking associated, spatacsin acts_upstream_of_or_within ISO (PMID:28237315) MGI PMID:28237315 NCBI chrNW_004936471:7,540,647...7,618,783 JBrowse link
G Stac3 SH3 and cysteine rich domain 3 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936646:1,436,505...1,444,712
Ensembl chrNW_004936646:1,436,425...1,443,595 		JBrowse link
G Wnt10b Wnt family member 10B acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936512:6,768,240...6,774,172
Ensembl chrNW_004936512:6,768,240...6,774,172 		JBrowse link
G Xk X-linked Kx blood group antigen, Kell and VPS13A binding protein acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936502:4,532,100...4,584,931
Ensembl chrNW_004936502:4,532,100...4,587,439 		JBrowse link
neuromuscular junction development, skeletal muscle fiber term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cntnap1 contactin associated protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:17,412,837...17,430,123
Ensembl chrNW_004936490:17,412,878...17,429,041 		JBrowse link
G Cntnap2 contactin associated protein 2 involved_in ISO (PMID:28370195) MGI PMID:28370195 NCBI chrNW_004936527:2,859,442...4,748,885
Ensembl chrNW_004936527:2,859,930...4,746,995 		JBrowse link
G Pmp22 peripheral myelin protein 22 acts_upstream_of_or_within ISO (PMID:25014022) MGI PMID:25014022 NCBI chrNW_004936724:1,747,015...1,780,298
Ensembl chrNW_004936724:1,747,005...1,778,141 		JBrowse link
positive regulation of skeletal muscle fiber development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actn3 actinin alpha 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936599:3,033,854...3,046,364
Ensembl chrNW_004936599:3,029,202...3,046,385 		JBrowse link
G Bcl2 BCL2 apoptosis regulator acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936497:2,209,136...2,373,580
Ensembl chrNW_004936497:2,210,334...2,210,921 		JBrowse link
G Lmod3 leiomodin 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936603:1,510,330...1,520,741
Ensembl chrNW_004936603:1,510,330...1,520,911 		JBrowse link
G Myf5 myogenic factor 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936698:1,609,227...1,611,283
Ensembl chrNW_004936698:1,609,227...1,611,283 		JBrowse link
G Myf6 myogenic factor 6 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936698:1,599,149...1,600,989
Ensembl chrNW_004936698:1,599,101...1,601,078 		JBrowse link
G Myod1 myogenic differentiation 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936528:1,407,187...1,409,683
Ensembl chrNW_004936528:1,407,661...1,409,573 		JBrowse link
G Myog myogenin involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936567:1,507,042...1,509,814
Ensembl chrNW_004936567:1,507,042...1,509,815 		JBrowse link
G Shox2 SHOX homeobox 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936519:4,810,777...4,818,733
Ensembl chrNW_004936519:4,809,687...4,818,792 		JBrowse link
regulation of skeletal muscle fiber development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fbxo22 F-box protein 22 involved_in
acts_upstream_of_or_within		 IEA TreeGrafter
Ensembl		 GO_REF:0000107 GO_REF:0000118 NCBI chrNW_004936471:36,232,749...36,255,772
Ensembl chrNW_004936471:36,232,583...36,255,672 		JBrowse link
G Hdac4 histone deacetylase 4 acts_upstream_of_or_within IEA Ensembl GO_REF:0000107 NCBI chrNW_004936745:1,730,743...1,942,071
Ensembl chrNW_004936745:1,730,694...1,942,074 		JBrowse link
G Hdac5 histone deacetylase 5 acts_upstream_of_or_within ISO (PMID:17786239) MGI PMID:17786239 NCBI chrNW_004936541:561,721...598,915
Ensembl chrNW_004936541:558,414...599,195 		JBrowse link
G Hdac9 histone deacetylase 9 acts_upstream_of_or_within ISO (PMID:17786239) MGI PMID:17786239 NCBI chrNW_004936546:4,398,003...5,247,649
Ensembl chrNW_004936546:4,781,304...5,246,939 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17417
    developmental process 6454
      anatomical structure development 6067
        tissue development 2135
          muscle tissue development 497
            striated muscle tissue development 474
              skeletal muscle tissue development 218
                skeletal muscle fiber development 44
                  negative regulation of skeletal muscle fiber development 0
                  neuromuscular junction development, skeletal muscle fiber 3
                  positive regulation of skeletal muscle fiber development 8
                  regulation of skeletal muscle fiber development + 12
Path 2
Term Annotations click to browse term
  biological_process 17417
    developmental process 6454
      cellular developmental process 4354
        cell differentiation 4353
          muscle cell differentiation 454
            striated muscle cell differentiation 348
              myotube differentiation 146
                myotube cell development 51
                  skeletal muscle fiber development 44
                    negative regulation of skeletal muscle fiber development 0
                    neuromuscular junction development, skeletal muscle fiber 3
                    positive regulation of skeletal muscle fiber development 8
                    regulation of skeletal muscle fiber development + 12
paths to the root