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ONTOLOGY REPORT - ANNOTATIONS


Term:skeletal muscle fiber development
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Accession:GO:0048741 term browser browse the term
Definition:The process whose specific outcome is the progression of the skeletal muscle fiber over time, from its formation to the mature structure. Muscle fibers are formed by the maturation of myotubes. They can be classed as slow, intermediate/fast or fast.
Synonyms:exact_synonym: skeletal muscle fibre development;   skeletal myofiber development;   skeletal myofibre development


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skeletal muscle fiber development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acta1 actin alpha 1, skeletal muscle involved_in IDA (MGI:78319|PMID:2731651) UniProt PMID:2731651 MGI:78319 NCBI chr 8:123,891,758...123,894,775
Ensembl chr 8:123,891,769...123,894,751
JBrowse link
G Bin3 bridging integrator 3 acts_upstream_of_or_within IMP (MGI:5517720|PMID:23872330) MGI PMID:23872330 MGI:5517720 NCBI chr14:70,100,089...70,137,964
Ensembl chr14:70,100,105...70,138,206
JBrowse link
G Cacna1s calcium channel, voltage-dependent, L type, alpha 1S subunit acts_upstream_of_or_within IMP
IDA
(MGI:3630139|PMID:289331), (MGI:53207|PMID:8462749)
(MGI:66718|PMID:8143864)
MGI PMID:289331 PMID:8143864 PMID:8462749 MGI:3630139 MGI:53207 MGI:66718 NCBI chr 1:136,052,806...136,119,822
Ensembl chr 1:136,052,750...136,119,822
JBrowse link
G Cav2 caveolin 2 acts_upstream_of_or_within IMP (MGI:3695802|PMID:17200204) MGI PMID:17200204 MGI:3695802 NCBI chr 6:17,281,185...17,289,130
Ensembl chr 6:17,281,185...17,289,115
JBrowse link
G Dner delta/notch-like EGF repeat containing acts_upstream_of_or_within IDA (MGI:3583881|PMID:15965470) MGI PMID:15965470 MGI:3583881 NCBI chr 1:84,369,839...84,696,221
Ensembl chr 1:84,369,839...84,696,221
JBrowse link
G Gpx1 glutathione peroxidase 1 acts_upstream_of_or_within IMP (MGI:3662804|PMID:16962942) MGI PMID:16962942 MGI:3662804 NCBI chr 9:108,339,080...108,340,342
Ensembl chr 9:108,338,903...108,340,343
JBrowse link
G Homer1 homer scaffolding protein 1 acts_upstream_of_or_within IMP (MGI:3784629|PMID:18268005) MGI PMID:18268005 MGI:3784629 NCBI chr13:93,303,757...93,405,129
Ensembl chr13:93,299,635...93,405,129
JBrowse link
G Hottip Hoxa distal transcript antisense RNA acts_upstream_of_or_within IMP (MGI:5788088|PMID:25909911) MGI PMID:25909911 MGI:5788088 NCBI chr 6:52,262,775...52,267,603
Ensembl chr 6:52,262,775...52,267,603
JBrowse link
G Kel Kell blood group acts_upstream_of_or_within IGI (MGI:5550316|PMID:24405768) MGI PMID:24405768 MGI:5550316 NCBI chr 6:41,686,329...41,704,334
Ensembl chr 6:41,686,330...41,704,339
JBrowse link
G Klhl40 kelch-like 40 involved_in
acts_upstream_of_or_within
IBA
IMP
(MGI:6201960|PMID:21873635)
(MGI:5586592|PMID:24960163)
(MGI:5700633|PMID:25940086)
GO_Central
MGI
UniProt
PMID:21873635 PMID:24960163 PMID:25940086 MGI:5586592 MGI:5700633 MGI:6201960 NCBI chr 9:121,777,499...121,791,200
Ensembl chr 9:121,777,607...121,783,818
JBrowse link
G Klhl41 kelch-like 41 involved_in IEA UniProt GO_REF:0000002 MGI:2152098 NCBI chr 2:69,670,120...69,684,239
Ensembl chr 2:69,670,120...69,684,230
JBrowse link
G Lmod3 leiomodin 3 (fetal) involved_in IMP (MGI:5644091|PMID:25774500), (MGI:5648755|PMID:26035871) UniProt PMID:25774500 PMID:26035871 MGI:5644091 MGI:5648755 NCBI chr 6:97,238,530...97,253,217
Ensembl chr 6:97,238,534...97,252,759
JBrowse link
G Myhas myosin heavy chain gene antisense RNA involved_in IMP
IDA
(MGI:5882697|PMID:28281528) MGI PMID:28281528 MGI:5882697 NCBI chr11:67,224,196...67,237,281
Ensembl chr11:67,211,256...67,237,573
JBrowse link
G Myod1 myogenic differentiation 1 acts_upstream_of_or_within IMP (MGI:3840749|PMID:19319192) MGI PMID:19319192 MGI:3840749 NCBI chr 7:46,376,474...46,379,092
Ensembl chr 7:46,376,474...46,379,099
JBrowse link
G Myog myogenin acts_upstream_of_or_within IMP (MGI:62381|PMID:8393145) MGI PMID:8393145 MGI:62381 NCBI chr 1:134,290,004...134,292,548
Ensembl chr 1:134,289,989...134,292,548
JBrowse link
G Myoparr myogenin promoter-associated myogenic regulatory antisense lncRNA acts_upstream_of_or_within IMP (MGI:6278090|PMID:30622218) MGI PMID:30622218 MGI:6278090 NCBI chr 1:134,288,595...134,289,761 JBrowse link
G Myorg myogenesis regulating glycosidase (putative) acts_upstream_of_or_within
involved_in
IMP
ISO
IBA
(MGI:4422154|PMID:19706595)
(MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:19706595 PMID:21873635 GO_REF:0000096 MGI:4422154 MGI:4834177 MGI:6201960 NCBI chr 4:41,491,847...41,503,135
Ensembl chr 4:41,495,604...41,503,076
JBrowse link
G Nfatc3 nuclear factor of activated T cells, cytoplasmic, calcineurin dependent 3 acts_upstream_of_or_within IMP (MGI:1933051|PMID:11254352) MGI PMID:11254352 MGI:1933051 NCBI chr 8:106,058,818...106,130,537
Ensembl chr 8:106,058,840...106,130,537
JBrowse link
G P2rx2 purinergic receptor P2X, ligand-gated ion channel, 2 acts_upstream_of_or_within IMP (MGI:3766888|PMID:17706883) MGI PMID:17706883 MGI:3766888 NCBI chr 5:110,339,812...110,343,320
Ensembl chr 5:110,339,812...110,343,212
JBrowse link
G Plec plectin involved_in IMP (MGI:3797705|PMID:18490514)
(MGI:5567855|PMID:24487589)
MGI PMID:18490514 PMID:24487589 MGI:3797705 MGI:5567855 NCBI chr15:76,170,974...76,231,378
Ensembl chr15:76,170,974...76,232,574
JBrowse link
G Ppp3ca protein phosphatase 3, catalytic subunit, alpha isoform acts_upstream_of_or_within IMP (MGI:3586394|PMID:16024798) MGI PMID:16024798 MGI:3586394 NCBI chr 3:136,669,714...136,937,727
Ensembl chr 3:136,670,124...136,937,727
JBrowse link
G Rcan1 regulator of calcineurin 1 acts_upstream_of_or_within IDA (MGI:3586394|PMID:16024798) MGI PMID:16024798 MGI:3586394 NCBI chr16:92,391,951...92,466,169
Ensembl chr16:92,391,953...92,470,867
JBrowse link
G Ripor2 RHO family interacting cell polarization regulator 2 involved_in IEA UniProt GO_REF:0000002 MGI:2152098 NCBI chr13:24,501,524...24,733,806
Ensembl chr13:24,501,525...24,733,816
JBrowse link
G Ryr1 ryanodine receptor 1, skeletal muscle involved_in IMP (MGI:3764002|PMID:18003898) UniProt PMID:18003898 MGI:3764002 NCBI chr 7:29,003,340...29,125,179
Ensembl chr 7:29,003,344...29,125,179
JBrowse link
G Selenon selenoprotein N acts_upstream_of_or_within
involved_in
IMP
IBA
(MGI:5494499|PMID:23325319)
(MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:21873635 PMID:23325319 MGI:5494499 MGI:6201960 NCBI chr 4:134,537,892...134,552,166
Ensembl chr 4:134,537,892...134,552,166
JBrowse link
G Six1 sine oculis-related homeobox 1 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr12:73,041,827...73,046,712
Ensembl chr12:73,040,015...73,053,887
JBrowse link
G Ski ski sarcoma viral oncogene homolog (avian) acts_upstream_of_or_within IMP (MGI:1095997|PMID:9284043) MGI PMID:9284043 MGI:1095997 NCBI chr 4:155,154,075...155,222,535
Ensembl chr 4:155,154,075...155,222,592
JBrowse link
G Smo smoothened, frizzled class receptor acts_upstream_of_or_within IMP (MGI:5438143|PMID:22987639) MGI PMID:22987639 MGI:5438143 NCBI chr 6:29,735,497...29,761,366
Ensembl chr 6:29,735,503...29,761,365
JBrowse link
G Stac3 SH3 and cysteine rich domain 3 acts_upstream_of_or_within IMP (MGI:5508972|PMID:23626854) MGI PMID:23626854 MGI:5508972 NCBI chr10:127,501,617...127,508,823
Ensembl chr10:127,501,686...127,508,823
JBrowse link
G Wnt10b wingless-type MMTV integration site family, member 10B acts_upstream_of_or_within IMP (MGI:3581945|PMID:15673614) MGI PMID:15673614 MGI:3581945 NCBI chr15:98,770,712...98,778,206
Ensembl chr15:98,770,712...98,778,150
JBrowse link
G Xk X-linked Kx blood group acts_upstream_of_or_within IGI (MGI:5550316|PMID:24405768) MGI PMID:24405768 MGI:5550316 NCBI chr  X:9,272,784...9,313,245
Ensembl chr  X:9,272,756...9,313,250
JBrowse link
neuromuscular junction development, skeletal muscle fiber term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cntnap1 contactin associated protein-like 1 involved_in IMP (MGI:6269164|PMID:28370195) MGI PMID:28370195 MGI:6269164 NCBI chr11:101,174,617...101,190,724
Ensembl chr11:101,170,523...101,190,724
JBrowse link
G Cntnap2 contactin associated protein-like 2 involved_in IMP (MGI:6269164|PMID:28370195) MGI PMID:28370195 MGI:6269164 NCBI chr 6:45,060,061...47,301,393
Ensembl chr 6:45,059,357...47,304,213
JBrowse link
G Pmp22 peripheral myelin protein 22 acts_upstream_of_or_within IMP (MGI:5605930|PMID:25014022) MGI PMID:25014022 MGI:5605930 NCBI chr11:63,128,982...63,159,547
Ensembl chr11:63,128,982...63,159,547
JBrowse link
positive regulation of skeletal muscle fiber development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actn3 actinin alpha 3 involved_in IMP (MGI:3778600|PMID:18178581) UniProt PMID:18178581 MGI:3778600 NCBI chr19:4,861,216...4,877,909
Ensembl chr19:4,861,216...4,877,909
JBrowse link
G Bcl2 B cell leukemia/lymphoma 2 acts_upstream_of_or_within IMP (MGI:1928555|PMID:11146504) MGI PMID:11146504 MGI:1928555 NCBI chr 1:106,538,176...106,714,290
Ensembl chr 1:106,538,178...106,714,274
JBrowse link
G Lmod3 leiomodin 3 (fetal) involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 6:97,238,530...97,253,217
Ensembl chr 6:97,238,534...97,252,759
JBrowse link
G Myf5 myogenic factor 5 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr10:107,482,908...107,486,927
Ensembl chr10:107,482,908...107,486,134
JBrowse link
G Myf6 myogenic factor 6 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr10:107,492,848...107,494,723
Ensembl chr10:107,492,853...107,494,737
JBrowse link
G Myod1 myogenic differentiation 1 involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 7:46,376,474...46,379,092
Ensembl chr 7:46,376,474...46,379,099
JBrowse link
G Myog myogenin involved_in IBA
IMP
(MGI:6201960|PMID:21873635)
(MGI:62381|PMID:8393145)
GO_Central
UniProt
PMID:8393145 PMID:21873635 MGI:6201960 MGI:62381 NCBI chr 1:134,290,004...134,292,548
Ensembl chr 1:134,289,989...134,292,548
JBrowse link
G Shox2 short stature homeobox 2 involved_in IMP (MGI:4946446|PMID:21156168) BHF-UCL PMID:21156168 MGI:4946446 NCBI chr 3:66,971,723...66,981,771
Ensembl chr 3:66,971,727...66,981,771
JBrowse link
regulation of skeletal muscle fiber development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fbxo22 F-box protein 22 involved_in
acts_upstream_of_or_within
IBA
IMP
(MGI:6201960|PMID:21873635)
(MGI:3840749|PMID:19319192)
GO_Central
MGI
PMID:19319192 PMID:21873635 MGI:3840749 MGI:6201960 NCBI chr 9:55,208,935...55,224,433
Ensembl chr 9:55,208,925...55,224,433
JBrowse link
G Hdac4 histone deacetylase 4 acts_upstream_of_or_within IGI (MGI:3763703|PMID:17786239) MGI PMID:17786239 MGI:3763703 NCBI chr 1:91,928,779...92,195,702
Ensembl chr 1:91,928,779...92,195,699
JBrowse link
G Hdac5 histone deacetylase 5 acts_upstream_of_or_within IGI (MGI:3763703|PMID:17786239) MGI PMID:17786239 MGI:3763703 NCBI chr11:102,195,747...102,230,172
Ensembl chr11:102,194,432...102,230,166
JBrowse link
G Hdac9 histone deacetylase 9 acts_upstream_of_or_within IGI (MGI:3763703|PMID:17786239) MGI PMID:17786239 MGI:3763703 NCBI chr12:34,047,580...34,917,095
Ensembl chr12:34,047,580...34,917,095
JBrowse link
G Naca nascent polypeptide-associated complex alpha polypeptide involved_in IMP (MGI:4867362|PMID:21071677) BHF-UCL PMID:21071677 MGI:4867362 NCBI chr10:128,035,346...128,048,637
Ensembl chr10:128,035,575...128,048,637
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28616
    developmental process 7037
      cellular developmental process 4757
        cell development 2527
          muscle cell development 230
            myotube cell development 48
              skeletal muscle fiber development 44
                negative regulation of skeletal muscle fiber development 0
                neuromuscular junction development, skeletal muscle fiber 3
                positive regulation of skeletal muscle fiber development 8
                regulation of skeletal muscle fiber development + 13
Path 2
Term Annotations click to browse term
  biological_process 28616
    developmental process 7037
      anatomical structure development 6424
        multicellular organism development 5800
          system development 5455
            animal organ development 4195
              muscle organ development 387
                skeletal muscle organ development 240
                  skeletal muscle tissue development 227
                    skeletal muscle fiber development 44
                      negative regulation of skeletal muscle fiber development 0
                      neuromuscular junction development, skeletal muscle fiber 3
                      positive regulation of skeletal muscle fiber development 8
                      regulation of skeletal muscle fiber development + 13
paths to the root