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ONTOLOGY REPORT - ANNOTATIONS

Term:skeletal muscle fiber development
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Accession:GO:0048741 term browser browse the term
Definition:The process whose specific outcome is the progression of the skeletal muscle fiber over time, from its formation to the mature structure. Muscle fibers are formed by the maturation of myotubes. They can be classed as slow, intermediate/fast or fast.
Synonyms:exact_synonym: skeletal muscle fibre development;   skeletal myofiber development;   skeletal myofibre development


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skeletal muscle fiber development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACTA1 actin alpha 1, skeletal muscle involved_in IEA
ISS		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:229,431,245...229,434,094
Ensembl chr 1:229,430,365...229,434,104 		JBrowse link
G ANHX anomalous homeobox involved_in IBA GO_Central GO_REF:0000033 NCBI chr12:133,218,312...133,235,877
Ensembl chr12:133,218,312...133,235,877 		JBrowse link
G BCL2 BCL2 apoptosis regulator involved_in
acts_upstream_of		 IEA
ISO		 (PMID:11146504) Ensembl
MGI		 PMID:11146504 GO_REF:0000107 NCBI chr18:63,123,346...63,320,090
Ensembl chr18:63,123,346...63,320,128 		JBrowse link
G BIN3 bridging integrator 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23872330) Ensembl
MGI		 PMID:23872330 GO_REF:0000107 NCBI chr 8:22,620,418...22,669,121
Ensembl chr 8:22,620,418...22,669,148 		JBrowse link
G CACNA1S calcium voltage-gated channel subunit alpha1 S involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:289331), (PMID:8462749)
(PMID:8143864)		 Ensembl
MGI		 PMID:289331 PMID:8143864 PMID:8462749 GO_REF:0000107 NCBI chr 1:201,039,512...201,112,426
Ensembl chr 1:201,039,512...201,112,451 		JBrowse link
G CAV2 caveolin 2 involved_in
acts_upstream_of_or_within		 IEA
ISO
ISS		 (PMID:17200204) Ensembl
MGI
UniProt		 PMID:17200204 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:116,499,738...116,508,541
Ensembl chr 7:116,287,380...116,508,541 		JBrowse link
G COL6A1 collagen type VI alpha 1 chain involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21037586) Ensembl
MGI		 PMID:21037586 GO_REF:0000107 NCBI chr21:45,981,770...46,005,048
Ensembl chr21:45,981,770...46,005,050 		JBrowse link
G DNER delta/notch like EGF repeat containing involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15965470) Ensembl
MGI		 PMID:15965470 GO_REF:0000107 NCBI chr 2:229,357,629...229,714,555
Ensembl chr 2:229,357,629...229,714,555 		JBrowse link
G GPX1 glutathione peroxidase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16962942) Ensembl
MGI		 PMID:16962942 GO_REF:0000107 NCBI chr 3:49,357,176...49,358,353
Ensembl chr 3:49,357,174...49,358,605 		JBrowse link
G HOMER1 homer scaffold protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18268005) Ensembl
MGI		 PMID:18268005 GO_REF:0000107 NCBI chr 5:79,372,636...79,514,134
Ensembl chr 5:79,372,636...79,514,134 		JBrowse link
G HOTTIP HOXA distal transcript antisense RNA acts_upstream_of_or_within ISO (PMID:25909911) MGI PMID:25909911 NCBI chr 7:27,200,421...27,207,259
Ensembl chr 7:27,198,575...27,207,259 		JBrowse link
G KEL Kell metallo-endopeptidase (Kell blood group) involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24405768) Ensembl
MGI		 PMID:24405768 GO_REF:0000107 NCBI chr 7:142,941,114...142,962,363
Ensembl chr 7:142,941,114...142,962,363 		JBrowse link
G KLHL40 kelch like family member 40 involved_in
acts_upstream_of_or_within		 ISS
ISO
IBA		 (PMID:24960163) UniProt
MGI
GO_Central		 PMID:24960163 GO_REF:0000024 GO_REF:0000033 NCBI chr 3:42,685,537...42,692,544
Ensembl chr 3:42,685,537...42,692,544 		JBrowse link
G LARGE1 LARGE xylosyl- and glucuronyltransferase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16111892) Ensembl
MGI		 PMID:16111892 GO_REF:0000107 NCBI chr22:33,066,663...33,922,824
Ensembl chr22:33,162,226...33,922,841 		JBrowse link
G LINC-PINT long intergenic non-protein coding RNA, p53 induced transcript involved_in ISO (PMID:25909911) MGI PMID:25909911 NCBI chr 7:130,877,562...131,109,925
Ensembl chr 7:130,791,264...131,110,176 		JBrowse link
G LMOD3 leiomodin 3 involved_in IEA
ISS		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:69,106,065...69,122,595
Ensembl chr 3:69,106,065...69,123,032 		JBrowse link
G MYHAS myosin heavy chain gene cluster antisense RNA involved_in ISO (PMID:28281528) MGI PMID:28281528 NCBI chr17:10,383,132...10,625,540
Ensembl chr17:10,383,144...10,623,886 		JBrowse link
G MYOD1 myogenic differentiation 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19319192) Ensembl
MGI		 PMID:19319192 GO_REF:0000107 NCBI chr11:17,719,571...17,722,136
Ensembl chr11:17,719,571...17,722,136 		JBrowse link
G MYOG myogenin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:8393145) Ensembl
MGI		 PMID:8393145 GO_REF:0000107 NCBI chr 1:203,083,129...203,086,012
Ensembl chr 1:203,083,129...203,086,012 		JBrowse link
G MYOPARR myogenin promoter associated myogenic regulatory antisense long non coding RNA acts_upstream_of_or_within ISO (PMID:30622218) MGI PMID:30622218 NCBI chr 1:203,083,795...203,088,340 JBrowse link
G MYORG myogenesis regulating glycosidase (putative) involved_in
acts_upstream_of_or_within		 IMP
ISO
IBA
IEA
ISS		 (PMID:19706595) UniProt
MGI
GO_Central
Ensembl		 PMID:19706595 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 9:34,366,666...34,376,898
Ensembl chr 9:34,366,666...34,376,898 		JBrowse link
G NFATC3 nuclear factor of activated T cells 3 acts_upstream_of_or_within ISO (PMID:11254352) MGI PMID:11254352 NCBI chr16:68,085,370...68,229,259
Ensembl chr16:68,084,751...68,229,259 		JBrowse link
G NORAD non-coding RNA activated by DNA damage involved_in ISO (PMID:30735131) MGI PMID:30735131 NCBI chr20:36,045,618...36,050,960
Ensembl chr20:36,045,618...36,051,018 		JBrowse link
G P2RX2 purinergic receptor P2X 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17706883) Ensembl
MGI		 PMID:17706883 GO_REF:0000107 NCBI chr12:132,618,776...132,622,388
Ensembl chr12:132,618,776...132,622,388 		JBrowse link
G PLEC plectin involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:143,915,153...143,976,745
Ensembl chr 8:143,915,153...143,976,734 		JBrowse link
G PPP3CA protein phosphatase 3 catalytic subunit alpha involved_in
acts_upstream_of_or_within		 IEA
ISO
ISS		 (PMID:16024798) Ensembl
MGI
UniProt		 PMID:16024798 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:101,023,418...101,347,526
Ensembl chr 4:101,023,409...101,348,278 		JBrowse link
G PPP3CB protein phosphatase 3 catalytic subunit beta involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr10:73,436,433...73,496,024
Ensembl chr10:73,436,433...73,496,024 		JBrowse link
G RCAN1 regulator of calcineurin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16024798) Ensembl
MGI		 PMID:16024798 GO_REF:0000107 NCBI chr21:34,516,442...34,615,113
Ensembl chr21:34,513,142...34,615,113 		JBrowse link
G RYR1 ryanodine receptor 1 involved_in ISS UniProt GO_REF:0000024 NCBI chr19:38,433,691...38,587,564
Ensembl chr19:38,433,691...38,595,273 		JBrowse link
G SELENON selenoprotein N involved_in
acts_upstream_of_or_within		 IEA
ISO
IBA		 (PMID:23325319) Ensembl
MGI
GO_Central		 PMID:23325319 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:25,800,193...25,818,221
Ensembl chr 1:25,800,193...25,818,221 		JBrowse link
G SIX1 SIX homeobox 1 involved_in IBA GO_Central GO_REF:0000033 NCBI chr14:60,643,421...60,649,477
Ensembl chr14:60,643,421...60,658,259 		JBrowse link
G SKI SKI proto-oncogene involved_in
acts_upstream_of_or_within		 ISS
ISO		 (PMID:9284043) BHF-UCL
MGI		 PMID:9284043 GO_REF:0000024 NCBI chr 1:2,228,319...2,310,213
Ensembl chr 1:2,227,388...2,310,213 		JBrowse link
G SMO smoothened, frizzled class receptor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22987639) Ensembl
MGI		 PMID:22987639 GO_REF:0000107 NCBI chr 7:129,188,633...129,213,545
Ensembl chr 7:129,188,633...129,213,545 		JBrowse link
G SPG11 SPG11 vesicle trafficking associated, spatacsin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:28237315) Ensembl
MGI		 PMID:28237315 GO_REF:0000107 NCBI chr15:44,562,696...44,663,662
Ensembl chr15:44,554,818...44,663,688 		JBrowse link
G STAC3 SH3 and cysteine rich domain 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23626854) Ensembl
MGI		 PMID:23626854 GO_REF:0000107 NCBI chr12:57,243,458...57,251,187
Ensembl chr12:57,243,453...57,251,188 		JBrowse link
G WNT10B Wnt family member 10B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15673614) Ensembl
MGI		 PMID:15673614 GO_REF:0000107 NCBI chr12:48,965,340...48,971,735
Ensembl chr12:48,965,340...48,971,735 		JBrowse link
G XK X-linked Kx blood group antigen, Kell and VPS13A binding protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24405768) Ensembl
MGI		 PMID:24405768 GO_REF:0000107 NCBI chr  X:37,685,791...37,732,130
Ensembl chr  X:37,685,791...37,732,130 		JBrowse link
neuromuscular junction development, skeletal muscle fiber term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CNTNAP1 contactin associated protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:42,682,531...42,699,993
Ensembl chr17:42,682,531...42,699,993 		JBrowse link
G CNTNAP2 contactin associated protein 2 involved_in ISO (PMID:28370195) MGI PMID:28370195 NCBI chr 7:146,116,801...148,420,998
Ensembl chr 7:146,116,002...148,420,998 		JBrowse link
G PMP22 peripheral myelin protein 22 acts_upstream_of_or_within ISO (PMID:25014022) MGI PMID:25014022 NCBI chr17:15,229,779...15,265,326
Ensembl chr17:15,229,773...15,272,292 		JBrowse link
positive regulation of skeletal muscle fiber development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACTN3 actinin alpha 3 involved_in IEA
ISS		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr11:66,546,395...66,563,334
Ensembl chr11:66,546,395...66,563,334 		JBrowse link
G BCL2 BCL2 apoptosis regulator involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11146504) Ensembl
MGI		 PMID:11146504 GO_REF:0000107 NCBI chr18:63,123,346...63,320,090
Ensembl chr18:63,123,346...63,320,128 		JBrowse link
G LMOD3 leiomodin 3 involved_in IMP (PMID:25250574) UniProt PMID:25250574 NCBI chr 3:69,106,065...69,122,595
Ensembl chr 3:69,106,065...69,123,032 		JBrowse link
G MYF5 myogenic factor 5 involved_in IEA
IBA		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr12:80,716,912...80,719,671
Ensembl chr12:80,716,912...80,719,671 		JBrowse link
G MYF6 myogenic factor 6 involved_in IBA GO_Central GO_REF:0000033 NCBI chr12:80,707,634...80,709,474
Ensembl chr12:80,707,634...80,709,474 		JBrowse link
G MYOD1 myogenic differentiation 1 involved_in IEA
IBA		 TreeGrafter
GO_Central		 GO_REF:0000033 GO_REF:0000118 NCBI chr11:17,719,571...17,722,136
Ensembl chr11:17,719,571...17,722,136 		JBrowse link
G MYOG myogenin involved_in IEA
IBA
ISS		 Ensembl
GO_Central
TreeGrafter
UniProt		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr 1:203,083,129...203,086,012
Ensembl chr 1:203,083,129...203,086,012 		JBrowse link
G NIBAN2 niban apoptosis regulator 2 involved_in ISS UniProt GO_REF:0000024 NCBI chr 9:127,505,343...127,579,031
Ensembl chr 9:127,505,339...127,578,989 		JBrowse link
G SHOX2 SHOX homeobox 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:158,095,905...158,106,420
Ensembl chr 3:158,095,905...158,106,420 		JBrowse link
regulation of skeletal muscle fiber development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FBXO22 F-box protein 22 involved_in
acts_upstream_of_or_within		 IEA
ISO
IBA		 (PMID:19319192) Ensembl
MGI
TreeGrafter
GO_Central		 PMID:19319192 GO_REF:0000033 GO_REF:0000107 GO_REF:0000118 NCBI chr15:75,903,878...75,942,511
Ensembl chr15:75,903,876...75,942,511 		JBrowse link
G HDAC4 histone deacetylase 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17786239) Ensembl
MGI		 PMID:17786239 GO_REF:0000107 NCBI chr 2:239,048,168...239,401,649
Ensembl chr 2:239,048,168...239,401,654 		JBrowse link
G HDAC5 histone deacetylase 5 acts_upstream_of_or_within ISO (PMID:17786239) MGI PMID:17786239 NCBI chr17:44,076,753...44,123,641
Ensembl chr17:44,076,746...44,123,702 		JBrowse link
G HDAC9 histone deacetylase 9 involved_in
acts_upstream_of_or_within		 ISS
ISO		 (PMID:17786239) UniProt
MGI		 PMID:17786239 GO_REF:0000024 NCBI chr 7:18,086,825...19,002,416
Ensembl chr 7:18,086,949...19,002,416 		JBrowse link
G NACA nascent polypeptide associated complex subunit alpha involved_in ISS BHF-UCL GO_REF:0000024 NCBI chr12:56,712,427...56,725,299
Ensembl chr12:56,712,305...56,731,628 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19669
    developmental process 7610
      cellular developmental process 5182
        cell development 3451
          muscle cell development 264
            myotube cell development 55
              skeletal muscle fiber development 50
                negative regulation of skeletal muscle fiber development 0
                neuromuscular junction development, skeletal muscle fiber 3
                positive regulation of skeletal muscle fiber development 9
                regulation of skeletal muscle fiber development + 14
Path 2
Term Annotations click to browse term
  biological_process 19669
    developmental process 7610
      cellular developmental process 5182
        cell differentiation 5181
          muscle cell differentiation 535
            striated muscle cell differentiation 398
              myotube differentiation 171
                myotube cell development 55
                  skeletal muscle fiber development 50
                    negative regulation of skeletal muscle fiber development 0
                    neuromuscular junction development, skeletal muscle fiber 3
                    positive regulation of skeletal muscle fiber development 9
                    regulation of skeletal muscle fiber development + 14
paths to the root