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ONTOLOGY REPORT - ANNOTATIONS


Term:skeletal muscle fiber development
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Accession:GO:0048741 term browser browse the term
Definition:The process whose specific outcome is the progression of the skeletal muscle fiber over time, from its formation to the mature structure. Muscle fibers are formed by the maturation of myotubes. They can be classed as slow, intermediate/fast or fast.
Synonyms:exact_synonym: skeletal muscle fibre development;   skeletal myofiber development;   skeletal myofibre development



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skeletal muscle fiber development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acta1 actin, alpha 1, skeletal muscle involved_in ISS
ISO
GO_REF:0000024
(PMID:2731651)
UniProt
RGD
PMID:2731651 GO_REF:0000024 NCBI chr19:51,883,709...51,886,735
Ensembl chr19:51,883,715...51,886,742
JBrowse link
G Actn1 actinin, alpha 1 involved_in ISS GO_REF:0000024 AgBase GO_REF:0000024 NCBI chr 6:98,998,553...99,093,334
Ensembl chr 6:98,998,556...99,093,251
JBrowse link
G Bcl2 BCL2, apoptosis regulator involved_in
acts_upstream_of
IEA
ISO
GO_REF:0000107
MGI:1857134 (PMID:11146504)
Ensembl
RGD
PMID:11146504 GO_REF:0000107 NCBI chr13:23,204,464...23,366,900
Ensembl chr13:22,684,989...22,853,743
Ensembl chr13:22,684,989...22,853,743
JBrowse link
G Bin3 bridging integrator 3 acts_upstream_of_or_within ISO MGI:3512131 (PMID:23872330) RGD PMID:23872330 NCBI chr15:45,173,725...45,212,607
Ensembl chr15:45,173,732...45,212,604
JBrowse link
G Bscl2 BSCL2 lipid droplet biogenesis associated, seipin involved_in ISO (PMID:30735131) RGD PMID:30735131 NCBI chr 1:205,731,828...205,743,430
Ensembl chr 1:205,733,872...205,743,421
JBrowse link
G Cacna1s calcium voltage-gated channel subunit alpha1 S involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1856326 (PMID:289331), (PMID:8143864), (PMID:8462749)
Ensembl
RGD
PMID:289331 PMID:8143864 PMID:8462749 GO_REF:0000107 NCBI chr13:47,493,949...47,564,194
Ensembl chr13:47,493,949...47,564,318
JBrowse link
G Cav2 caveolin 2 involved_in
acts_upstream_of_or_within
IEA
ISO
ISS
GO_REF:0000107
MGI:2180372 (PMID:17200204)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:17200204 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:45,616,766...45,624,144
Ensembl chr 4:45,616,712...45,624,244
JBrowse link
G Col6a1 collagen type VI alpha 1 chain acts_upstream_of_or_within ISO MGI:2153356 (PMID:21037586) RGD PMID:21037586 NCBI chr20:11,906,105...11,924,599
Ensembl chr20:11,905,957...11,924,597
JBrowse link
G Dner delta/notch-like EGF repeat containing acts_upstream_of_or_within ISO (PMID:15965470) RGD PMID:15965470 NCBI chr 9:85,586,985...85,902,461
Ensembl chr 9:85,586,987...85,902,637
JBrowse link
G Gpx1 glutathione peroxidase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2158814 (PMID:16962942)
Ensembl
RGD
PMID:16962942 GO_REF:0000107 NCBI chr 8:109,026,905...109,028,031
Ensembl chr 8:109,026,905...109,028,024
JBrowse link
G Homer1 homer scaffold protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3526529 (PMID:18268005)
Ensembl
RGD
PMID:18268005 GO_REF:0000107 NCBI chr 2:24,542,777...24,645,715
Ensembl chr 2:24,543,093...24,644,785
JBrowse link
G Kel Kell metallo-endopeptidase (Kell blood group) acts_upstream_of_or_within ISO MGI:103569 (PMID:24405768) RGD PMID:24405768 NCBI chr 4:70,568,241...70,585,666
Ensembl chr 4:70,568,243...70,585,631
JBrowse link
G Klhl40 kelch-like family member 40 involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
(PMID:25940086)
MGI:4843038 (PMID:24960163)
GO_Central
RGD
PMID:24960163 PMID:25940086 GO_REF:0000033 NCBI chr 8:121,441,285...121,446,801
Ensembl chr 8:121,441,287...121,446,800
JBrowse link
G Large1 LARGE xylosyl- and glucuronyltransferase 1 acts_upstream_of_or_within ISO MGI:3510641 (PMID:16111892) RGD PMID:16111892 NCBI chr19:11,603,129...12,048,930
Ensembl chr19:11,603,129...12,048,930
JBrowse link
G Lmod3 leiomodin 3 involved_in ISO (PMID:25774500), (PMID:26035871) RGD PMID:25774500 PMID:26035871 NCBI chr 4:129,843,964...129,858,684
Ensembl chr 4:129,843,970...129,858,244
JBrowse link
G Myod1 myogenic differentiation 1 acts_upstream_of_or_within ISO (PMID:19319192) RGD PMID:19319192 NCBI chr 1:96,884,864...96,887,574
Ensembl chr 1:96,884,948...96,887,554
JBrowse link
G Myog myogenin involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857667 (PMID:8393145)
Ensembl
RGD
PMID:8393145 GO_REF:0000107 NCBI chr13:45,745,455...45,748,044
Ensembl chr13:45,745,436...45,748,039
JBrowse link
G Myorg myogenesis regulating glycosidase involved_in
acts_upstream_of_or_within
ISO
IBA
(PMID:19706595)
GO_REF:0000033
RGD
GO_Central
PMID:19706595 GO_REF:0000033 NCBI chr 5:56,654,257...56,664,467
Ensembl chr 5:56,648,643...56,664,440
JBrowse link
G Nfatc3 nuclear factor of activated T-cells 3 acts_upstream_of_or_within ISO MGI:2182778 (PMID:11254352) RGD PMID:11254352 NCBI chr19:33,960,643...34,035,150
Ensembl chr19:33,960,852...34,035,150
JBrowse link
G P2rx2 purinergic receptor P2X 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2687349 (PMID:17706883)
Ensembl
RGD
PMID:17706883 GO_REF:0000107 NCBI chr12:46,338,979...46,342,891
Ensembl chr12:46,339,549...46,342,891
JBrowse link
G Plec plectin involved_in IEA
ISO
GO_REF:0000107
MGI:3799315 (PMID:18490514), (PMID:24487589)
Ensembl
RGD
PMID:18490514 PMID:24487589 GO_REF:0000107 NCBI chr 7:107,887,764...107,949,100
Ensembl chr 7:107,887,764...107,945,467
JBrowse link
G Ppp3ca protein phosphatase 3 catalytic subunit alpha involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
(PMID:12773574)
(PMID:16024798)
UniProt
RGD
PMID:12773574 PMID:16024798 GO_REF:0000024 NCBI chr 2:225,165,981...225,440,978
Ensembl chr 2:225,165,766...225,438,974
JBrowse link
G Ppp3cb protein phosphatase 3 catalytic subunit beta involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:12773574)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:12773574 GO_REF:0000024 GO_REF:0000107 NCBI chr15:3,759,950...3,804,976
Ensembl chr15:3,760,030...3,804,981
JBrowse link
G Rcan1 regulator of calcineurin 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:16024798)
Ensembl
RGD
PMID:16024798 GO_REF:0000107 NCBI chr11:31,622,208...31,702,150
Ensembl chr11:31,622,210...31,702,045
JBrowse link
G Ryr1 ryanodine receptor 1 involved_in ISS
ISO
GO_REF:0000024
(PMID:18003898)
UniProt
RGD
PMID:18003898 GO_REF:0000024 NCBI chr 1:84,292,578...84,423,824
Ensembl chr 1:84,292,578...84,423,812
JBrowse link
G Selenon selenoprotein N involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
(PMID:23325319)
GO_Central
RGD
PMID:23325319 GO_REF:0000033 NCBI chr 5:146,748,638...146,764,656
Ensembl chr 5:146,748,652...146,763,059
JBrowse link
G Six1 SIX homeobox 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 6:91,746,739...91,751,975
Ensembl chr 6:91,746,739...91,751,975
JBrowse link
G Ski Ski proto-oncogene acts_upstream_of_or_within ISO MGI:2177555 (PMID:9284043) RGD PMID:9284043 NCBI chr 5:165,713,525...165,782,134
Ensembl chr 5:165,714,093...165,782,733
JBrowse link
G Smo smoothened, frizzled class receptor involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2176256|MGI:3573783 (PMID:22987639)
Ensembl
RGD
PMID:22987639 GO_REF:0000107 NCBI chr 4:58,343,626...58,373,823
Ensembl chr 4:58,343,529...58,373,829
JBrowse link
G Spg11 SPG11 vesicle trafficking associated, spatacsin acts_upstream_of_or_within ISO MGI:6451766 (PMID:28237315) RGD PMID:28237315 NCBI chr 3:109,007,658...109,072,904
Ensembl chr 3:109,008,135...109,072,911
JBrowse link
G Stac3 SH3 and cysteine rich domain 3 acts_upstream_of_or_within ISO (PMID:23626854) RGD PMID:23626854 NCBI chr 7:63,343,078...63,350,590
Ensembl chr 7:63,343,186...63,350,589
JBrowse link
G Wnt10b Wnt family member 10B acts_upstream_of_or_within ISO MGI:3582610 (PMID:15673614) RGD PMID:15673614 NCBI chr 7:129,922,088...129,927,892
Ensembl chr 7:129,922,088...129,927,892
JBrowse link
G Xk X-linked Kx blood group antigen, Kell and VPS13A binding protein involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1346053 (PMID:24405768)
Ensembl
RGD
PMID:24405768 GO_REF:0000107 NCBI chr  X:13,436,412...13,472,830
Ensembl chr  X:13,436,418...13,472,830
JBrowse link
neuromuscular junction development, skeletal muscle fiber term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cntnap1 contactin associated protein 1 involved_in ISO MGI:2384080|MGI:2677631 (PMID:28370195) RGD PMID:28370195 NCBI chr10:86,109,850...86,125,612
Ensembl chr10:86,111,643...86,125,611
JBrowse link
G Cntnap2 contactin associated protein 2 involved_in ISO MGI:2384080|MGI:2677631 (PMID:28370195) RGD PMID:28370195 NCBI chr 4:74,109,455...76,366,434
Ensembl chr 4:74,109,472...76,362,027
JBrowse link
G Pmp22 peripheral myelin protein 22 acts_upstream_of_or_within ISO MGI:1856217 (PMID:25014022) RGD PMID:25014022 NCBI chr10:47,795,709...47,825,715
Ensembl chr10:47,795,709...47,825,714
JBrowse link
positive regulation of skeletal muscle fiber development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Actn3 actinin alpha 3 involved_in ISO (PMID:18178581) RGD PMID:18178581 NCBI chr 1:202,159,081...202,175,012
Ensembl chr 1:202,159,082...202,175,012
JBrowse link
G Bcl2 BCL2, apoptosis regulator involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857134 (PMID:11146504)
Ensembl
RGD
PMID:11146504 GO_REF:0000107 NCBI chr13:23,204,464...23,366,900
Ensembl chr13:22,684,989...22,853,743
Ensembl chr13:22,684,989...22,853,743
JBrowse link
G Lmod3 leiomodin 3 involved_in ISO (PMID:25250574) RGD PMID:25250574 NCBI chr 4:129,843,964...129,858,684
Ensembl chr 4:129,843,970...129,858,244
JBrowse link
G Myf5 myogenic factor 5 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:42,802,946...42,806,177
Ensembl chr 7:42,802,946...42,806,177
JBrowse link
G Myf6 myogenic factor 6 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 7:42,813,008...42,814,852
Ensembl chr 7:42,812,792...42,814,852
JBrowse link
G Myod1 myogenic differentiation 1 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:96,884,864...96,887,574
Ensembl chr 1:96,884,948...96,887,554
JBrowse link
G Myog myogenin involved_in ISS
ISO
IBA
IEA
GO_REF:0000024
(PMID:8393145)
GO_REF:0000033
GO_REF:0000107
UniProt
RGD
GO_Central
Ensembl
PMID:8393145 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr13:45,745,455...45,748,044
Ensembl chr13:45,745,436...45,748,039
JBrowse link
G Shox2 SHOX homeobox 2 involved_in IEA
ISO
GO_REF:0000107
(PMID:21156168)
Ensembl
RGD
PMID:21156168 GO_REF:0000107 NCBI chr 2:151,217,049...151,227,180
Ensembl chr 2:151,217,552...151,227,143
JBrowse link
regulation of skeletal muscle fiber development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fbxo22 F-box protein 22 involved_in
acts_upstream_of_or_within
IBA
ISO
GO_REF:0000033
(PMID:19319192)
GO_Central
RGD
PMID:19319192 GO_REF:0000033 NCBI chr 8:55,579,906...55,595,981
Ensembl chr 8:55,579,891...55,596,148
JBrowse link
G Hdac4 histone deacetylase 4 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1333784|MGI:1931221 (PMID:17786239)
Ensembl
RGD
PMID:17786239 GO_REF:0000107 NCBI chr 9:92,503,467...92,750,164
Ensembl chr 9:92,507,611...92,750,164
JBrowse link
G Hdac5 histone deacetylase 5 acts_upstream_of_or_within ISO MGI:1931221|MGI:3036234 (PMID:17786239) RGD PMID:17786239 NCBI chr10:87,152,978...87,187,921
Ensembl chr10:87,152,978...87,188,235
JBrowse link
G Hdac9 histone deacetylase 9 acts_upstream_of_or_within ISO MGI:1333784|MGI:3036284 (PMID:17786239) RGD PMID:17786239 NCBI chr 6:50,762,074...51,624,311
Ensembl chr 6:50,763,590...51,625,333
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20536
    developmental process 7109
      anatomical structure development 6611
        tissue development 2314
          muscle tissue development 534
            striated muscle tissue development 506
              skeletal muscle tissue development 229
                skeletal muscle fiber development 44
                  negative regulation of skeletal muscle fiber development 0
                  neuromuscular junction development, skeletal muscle fiber 3
                  positive regulation of skeletal muscle fiber development 8
                  regulation of skeletal muscle fiber development + 12
Path 2
Term Annotations click to browse term
  biological_process 20536
    developmental process 7109
      cellular developmental process 4812
        cell differentiation 4811
          muscle cell differentiation 483
            striated muscle cell differentiation 362
              myotube differentiation 147
                myotube cell development 51
                  skeletal muscle fiber development 44
                    negative regulation of skeletal muscle fiber development 0
                    neuromuscular junction development, skeletal muscle fiber 3
                    positive regulation of skeletal muscle fiber development 8
                    regulation of skeletal muscle fiber development + 12
paths to the root