ONTOLOGY REPORT - ANNOTATIONS
Term: skeletal muscle fiber development
Accession: GO:0048741
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Definition: The process whose specific outcome is the progression of the skeletal muscle fiber over time, from its formation to the mature structure. Muscle fibers are formed by the maturation of myotubes. They can be classed as slow, intermediate/fast or fast.
Synonyms: exact_synonym: skeletal muscle fibre development; skeletal myofiber development; skeletal myofibre development
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Acta1
actin, alpha 1, skeletal muscle
involved_in
ISS ISO
GO_REF:0000024 (PMID:2731651)
UniProt RGD
PMID:2731651
GO_REF:0000024
NCBI chr19:51,883,709...51,886,735
Ensembl chr19:51,883,715...51,886,742
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Actn1
actinin, alpha 1
involved_in
ISS
GO_REF:0000024
AgBase
GO_REF:0000024
NCBI chr 6:98,998,553...99,093,334
Ensembl chr 6:98,998,556...99,093,251
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Bcl2
BCL2, apoptosis regulator
involved_in acts_upstream_of
IEA ISO
GO_REF:0000107 MGI:1857134 (PMID:11146504)
Ensembl RGD
PMID:11146504
GO_REF:0000107
NCBI chr13:23,204,464...23,366,900
Ensembl chr13:22,684,989...22,853,743 Ensembl chr13:22,684,989...22,853,743
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Bin3
bridging integrator 3
acts_upstream_of_or_within
ISO
MGI:3512131 (PMID:23872330)
RGD
PMID:23872330
NCBI chr15:45,173,725...45,212,607
Ensembl chr15:45,173,732...45,212,604
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Bscl2
BSCL2 lipid droplet biogenesis associated, seipin
involved_in
ISO
(PMID:30735131)
RGD
PMID:30735131
NCBI chr 1:205,731,828...205,743,430
Ensembl chr 1:205,733,872...205,743,421
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Cacna1s
calcium voltage-gated channel subunit alpha1 S
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1856326 (PMID:289331), (PMID:8143864), (PMID:8462749)
Ensembl RGD
PMID:289331 PMID:8143864 PMID:8462749
GO_REF:0000107
NCBI chr13:47,493,949...47,564,194
Ensembl chr13:47,493,949...47,564,318
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Cav2
caveolin 2
involved_in acts_upstream_of_or_within
IEA ISO ISS
GO_REF:0000107 MGI:2180372 (PMID:17200204) GO_REF:0000024
Ensembl RGD UniProt
PMID:17200204
GO_REF:0000024 GO_REF:0000107
NCBI chr 4:45,616,766...45,624,144
Ensembl chr 4:45,616,712...45,624,244
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Col6a1
collagen type VI alpha 1 chain
acts_upstream_of_or_within
ISO
MGI:2153356 (PMID:21037586)
RGD
PMID:21037586
NCBI chr20:11,906,105...11,924,599
Ensembl chr20:11,905,957...11,924,597
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Dner
delta/notch-like EGF repeat containing
acts_upstream_of_or_within
ISO
(PMID:15965470)
RGD
PMID:15965470
NCBI chr 9:85,586,985...85,902,461
Ensembl chr 9:85,586,987...85,902,637
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Gpx1
glutathione peroxidase 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2158814 (PMID:16962942)
Ensembl RGD
PMID:16962942
GO_REF:0000107
NCBI chr 8:109,026,905...109,028,031
Ensembl chr 8:109,026,905...109,028,024
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Homer1
homer scaffold protein 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:3526529 (PMID:18268005)
Ensembl RGD
PMID:18268005
GO_REF:0000107
NCBI chr 2:24,542,777...24,645,715
Ensembl chr 2:24,543,093...24,644,785
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Kel
Kell metallo-endopeptidase (Kell blood group)
acts_upstream_of_or_within
ISO
MGI:103569 (PMID:24405768)
RGD
PMID:24405768
NCBI chr 4:70,568,241...70,585,666
Ensembl chr 4:70,568,243...70,585,631
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Klhl40
kelch-like family member 40
involved_in acts_upstream_of_or_within
IBA ISO
GO_REF:0000033 (PMID:25940086) MGI:4843038 (PMID:24960163)
GO_Central RGD
PMID:24960163 PMID:25940086
GO_REF:0000033
NCBI chr 8:121,441,285...121,446,801
Ensembl chr 8:121,441,287...121,446,800
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Large1
LARGE xylosyl- and glucuronyltransferase 1
acts_upstream_of_or_within
ISO
MGI:3510641 (PMID:16111892)
RGD
PMID:16111892
NCBI chr19:11,603,129...12,048,930
Ensembl chr19:11,603,129...12,048,930
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Lmod3
leiomodin 3
involved_in
ISO
(PMID:25774500), (PMID:26035871)
RGD
PMID:25774500 PMID:26035871
NCBI chr 4:129,843,964...129,858,684
Ensembl chr 4:129,843,970...129,858,244
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Myod1
myogenic differentiation 1
acts_upstream_of_or_within
ISO
(PMID:19319192)
RGD
PMID:19319192
NCBI chr 1:96,884,864...96,887,574
Ensembl chr 1:96,884,948...96,887,554
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Myog
myogenin
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1857667 (PMID:8393145)
Ensembl RGD
PMID:8393145
GO_REF:0000107
NCBI chr13:45,745,455...45,748,044
Ensembl chr13:45,745,436...45,748,039
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Myorg
myogenesis regulating glycosidase
involved_in acts_upstream_of_or_within
ISO IBA
(PMID:19706595) GO_REF:0000033
RGD GO_Central
PMID:19706595
GO_REF:0000033
NCBI chr 5:56,654,257...56,664,467
Ensembl chr 5:56,648,643...56,664,440
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Nfatc3
nuclear factor of activated T-cells 3
acts_upstream_of_or_within
ISO
MGI:2182778 (PMID:11254352)
RGD
PMID:11254352
NCBI chr19:33,960,643...34,035,150
Ensembl chr19:33,960,852...34,035,150
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P2rx2
purinergic receptor P2X 2
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2687349 (PMID:17706883)
Ensembl RGD
PMID:17706883
GO_REF:0000107
NCBI chr12:46,338,979...46,342,891
Ensembl chr12:46,339,549...46,342,891
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Plec
plectin
involved_in
IEA ISO
GO_REF:0000107 MGI:3799315 (PMID:18490514), (PMID:24487589)
Ensembl RGD
PMID:18490514 PMID:24487589
GO_REF:0000107
NCBI chr 7:107,887,764...107,949,100
Ensembl chr 7:107,887,764...107,945,467
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Ppp3ca
protein phosphatase 3 catalytic subunit alpha
involved_in acts_upstream_of_or_within
ISS ISO
GO_REF:0000024 (PMID:12773574) (PMID:16024798)
UniProt RGD
PMID:12773574 PMID:16024798
GO_REF:0000024
NCBI chr 2:225,165,981...225,440,978
Ensembl chr 2:225,165,766...225,438,974
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Ppp3cb
protein phosphatase 3 catalytic subunit beta
involved_in
ISS ISO IEA
GO_REF:0000024 (PMID:12773574) GO_REF:0000107
UniProt RGD Ensembl
PMID:12773574
GO_REF:0000024 GO_REF:0000107
NCBI chr15:3,759,950...3,804,976
Ensembl chr15:3,760,030...3,804,981
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Rcan1
regulator of calcineurin 1
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 (PMID:16024798)
Ensembl RGD
PMID:16024798
GO_REF:0000107
NCBI chr11:31,622,208...31,702,150
Ensembl chr11:31,622,210...31,702,045
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Ryr1
ryanodine receptor 1
involved_in
ISS ISO
GO_REF:0000024 (PMID:18003898)
UniProt RGD
PMID:18003898
GO_REF:0000024
NCBI chr 1:84,292,578...84,423,824
Ensembl chr 1:84,292,578...84,423,812
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Selenon
selenoprotein N
involved_in acts_upstream_of_or_within
IBA ISO
GO_REF:0000033 (PMID:23325319)
GO_Central RGD
PMID:23325319
GO_REF:0000033
NCBI chr 5:146,748,638...146,764,656
Ensembl chr 5:146,748,652...146,763,059
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Six1
SIX homeobox 1
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 6:91,746,739...91,751,975
Ensembl chr 6:91,746,739...91,751,975
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Ski
Ski proto-oncogene
acts_upstream_of_or_within
ISO
MGI:2177555 (PMID:9284043)
RGD
PMID:9284043
NCBI chr 5:165,713,525...165,782,134
Ensembl chr 5:165,714,093...165,782,733
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Smo
smoothened, frizzled class receptor
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:2176256|MGI:3573783 (PMID:22987639)
Ensembl RGD
PMID:22987639
GO_REF:0000107
NCBI chr 4:58,343,626...58,373,823
Ensembl chr 4:58,343,529...58,373,829
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Spg11
SPG11 vesicle trafficking associated, spatacsin
acts_upstream_of_or_within
ISO
MGI:6451766 (PMID:28237315)
RGD
PMID:28237315
NCBI chr 3:109,007,658...109,072,904
Ensembl chr 3:109,008,135...109,072,911
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Stac3
SH3 and cysteine rich domain 3
acts_upstream_of_or_within
ISO
(PMID:23626854)
RGD
PMID:23626854
NCBI chr 7:63,343,078...63,350,590
Ensembl chr 7:63,343,186...63,350,589
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Wnt10b
Wnt family member 10B
acts_upstream_of_or_within
ISO
MGI:3582610 (PMID:15673614)
RGD
PMID:15673614
NCBI chr 7:129,922,088...129,927,892
Ensembl chr 7:129,922,088...129,927,892
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Xk
X-linked Kx blood group antigen, Kell and VPS13A binding protein
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1346053 (PMID:24405768)
Ensembl RGD
PMID:24405768
GO_REF:0000107
NCBI chr X:13,436,412...13,472,830
Ensembl chr X:13,436,418...13,472,830
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Cntnap1
contactin associated protein 1
involved_in
ISO
MGI:2384080|MGI:2677631 (PMID:28370195)
RGD
PMID:28370195
NCBI chr10:86,109,850...86,125,612
Ensembl chr10:86,111,643...86,125,611
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Cntnap2
contactin associated protein 2
involved_in
ISO
MGI:2384080|MGI:2677631 (PMID:28370195)
RGD
PMID:28370195
NCBI chr 4:74,109,455...76,366,434
Ensembl chr 4:74,109,472...76,362,027
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Pmp22
peripheral myelin protein 22
acts_upstream_of_or_within
ISO
MGI:1856217 (PMID:25014022)
RGD
PMID:25014022
NCBI chr10:47,795,709...47,825,715
Ensembl chr10:47,795,709...47,825,714
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Actn3
actinin alpha 3
involved_in
ISO
(PMID:18178581)
RGD
PMID:18178581
NCBI chr 1:202,159,081...202,175,012
Ensembl chr 1:202,159,082...202,175,012
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Bcl2
BCL2, apoptosis regulator
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1857134 (PMID:11146504)
Ensembl RGD
PMID:11146504
GO_REF:0000107
NCBI chr13:23,204,464...23,366,900
Ensembl chr13:22,684,989...22,853,743 Ensembl chr13:22,684,989...22,853,743
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Lmod3
leiomodin 3
involved_in
ISO
(PMID:25250574)
RGD
PMID:25250574
NCBI chr 4:129,843,964...129,858,684
Ensembl chr 4:129,843,970...129,858,244
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Myf5
myogenic factor 5
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 7:42,802,946...42,806,177
Ensembl chr 7:42,802,946...42,806,177
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Myf6
myogenic factor 6
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 7:42,813,008...42,814,852
Ensembl chr 7:42,812,792...42,814,852
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Myod1
myogenic differentiation 1
involved_in
IBA
GO_REF:0000033
GO_Central
GO_REF:0000033
NCBI chr 1:96,884,864...96,887,574
Ensembl chr 1:96,884,948...96,887,554
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Myog
myogenin
involved_in
ISS ISO IBA IEA
GO_REF:0000024 (PMID:8393145) GO_REF:0000033 GO_REF:0000107
UniProt RGD GO_Central Ensembl
PMID:8393145
GO_REF:0000024 GO_REF:0000033 GO_REF:0000107
NCBI chr13:45,745,455...45,748,044
Ensembl chr13:45,745,436...45,748,039
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Shox2
SHOX homeobox 2
involved_in
IEA ISO
GO_REF:0000107 (PMID:21156168)
Ensembl RGD
PMID:21156168
GO_REF:0000107
NCBI chr 2:151,217,049...151,227,180
Ensembl chr 2:151,217,552...151,227,143
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Fbxo22
F-box protein 22
involved_in acts_upstream_of_or_within
IBA ISO
GO_REF:0000033 (PMID:19319192)
GO_Central RGD
PMID:19319192
GO_REF:0000033
NCBI chr 8:55,579,906...55,595,981
Ensembl chr 8:55,579,891...55,596,148
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Hdac4
histone deacetylase 4
involved_in acts_upstream_of_or_within
IEA ISO
GO_REF:0000107 MGI:1333784|MGI:1931221 (PMID:17786239)
Ensembl RGD
PMID:17786239
GO_REF:0000107
NCBI chr 9:92,503,467...92,750,164
Ensembl chr 9:92,507,611...92,750,164
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Hdac5
histone deacetylase 5
acts_upstream_of_or_within
ISO
MGI:1931221|MGI:3036234 (PMID:17786239)
RGD
PMID:17786239
NCBI chr10:87,152,978...87,187,921
Ensembl chr10:87,152,978...87,188,235
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Hdac9
histone deacetylase 9
acts_upstream_of_or_within
ISO
MGI:1333784|MGI:3036284 (PMID:17786239)
RGD
PMID:17786239
NCBI chr 6:50,762,074...51,624,311
Ensembl chr 6:50,763,590...51,625,333
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