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ONTOLOGY REPORT - ANNOTATIONS

Term:epidermis morphogenesis
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Accession:GO:0048730 term browser browse the term
Definition:The process in which the anatomical structures of the epidermis are generated and organized. The epidermis is the outer epithelial layer of an animal, it may be a single layer that produces an extracellular material (e.g. the cuticle of arthropods) or a complex stratified squamous epithelium, as in the case of many vertebrate species.
Synonyms:related_synonym: hypodermis morphogenesis


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epidermis morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dicer1 dicer 1 ribonuclease III acts_upstream_of_or_within ISO MGI:3641051 (PMID:16682203) RGD PMID:16682203 NCBI chr 6:129,392,298...129,457,252
Ensembl chr 6:123,631,250...123,693,965 		JBrowse link
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within ISO
IEA 		MGI:1927833 (PMID:14530295)
GO_REF:0000107 		RGD
Ensembl		 PMID:14530295 GO_REF:0000107 NCBI chr 2:52,533,939...52,610,980
Ensembl chr 2:50,800,992...50,876,866 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO MGI:2153818 (PMID:14530295) RGD PMID:14530295 NCBI chr 1:194,175,703...194,280,914
Ensembl chr 1:184,745,420...184,850,626 		JBrowse link
G Flg2 filaggrin 2 involved_in ISO (PMID:29505760), (PMID:29758285) RGD PMID:29505760 PMID:29758285 NCBI chr 2:178,789,792...178,802,232 JBrowse link
G Klf4 KLF transcription factor 4 acts_upstream_of_or_within ISO
IEA 		MGI:2183936 (PMID:10431239)
GO_REF:0000107 		RGD
Ensembl		 PMID:10431239 GO_REF:0000107 NCBI chr 5:70,278,843...70,283,751
Ensembl chr 5:70,278,972...70,283,602 		JBrowse link
G Klk14 kallikrein related-peptidase 14 involved_in ISO (PMID:17158887) RGD PMID:17158887 NCBI chr 1:94,123,131...94,137,239
Ensembl chr 1:94,131,998...94,137,240 		JBrowse link
G Plod3 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 acts_upstream_of_or_within ISO
IEA 		MGI:3620603 (PMID:16467571)
GO_REF:0000107 		RGD
Ensembl		 PMID:16467571 GO_REF:0000107 NCBI chr12:19,676,384...19,686,945
Ensembl chr12:19,676,386...19,686,960 		JBrowse link
G Smarca4 SWI/SNF related BAF chromatin remodeling complex subunit ATPase 4 acts_upstream_of_or_within ISO MGI:2177413|MGI:3605892 (PMID:16192310) RGD PMID:16192310 NCBI chr 8:20,167,717...20,258,975
Ensembl chr 8:20,167,717...20,258,975 		JBrowse link
G Tfap2a transcription factor AP-2 alpha acts_upstream_of_or_within ISO MGI:3038304 (PMID:16449191) RGD PMID:16449191 NCBI chr17:24,230,064...24,253,219
Ensembl chr17:24,024,432...24,047,507 		JBrowse link
G Wnt10a Wnt family member 10A involved_in ISO
IEA 		(PMID:20163410)
GO_REF:0000107 		RGD
Ensembl		 PMID:20163410 GO_REF:0000107 NCBI chr 9:83,798,594...83,811,060
Ensembl chr 9:76,349,931...76,362,400 		JBrowse link
hair follicle morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp7a ATPase copper transporting alpha acts_upstream_of_or_within ISO MGI:1856099|MGI:1856466 (PMID:2473662) RGD PMID:2473662 MGI:61157 NCBI chr  X:75,159,635...75,267,094
Ensembl chr  X:71,094,202...71,198,354 		JBrowse link
G Bcl2 BCL2, apoptosis regulator involved_in ISO (PMID:8402909) RGD PMID:8402909 NCBI chr13:23,204,464...23,366,900
Ensembl chr13:22,684,989...22,853,743
Ensembl chr13:22,684,989...22,853,743 		JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within ISO
IEA 		MGI:2148567|MGI:2148594|MGI:2148596|MGI:5461544 (PMID:11371349), (PMID:24309208)
GO_REF:0000107 		RGD
Ensembl		 PMID:11371349 PMID:24309208 GO_REF:0000107 NCBI chr 8:129,517,576...129,544,661
Ensembl chr 8:120,639,995...120,667,111 		JBrowse link
G Ctsl cathepsin L acts_upstream_of_or_within ISO MGI:2136432 (PMID:11023992) RGD PMID:11023992 NCBI chr17:770,104...776,266
Ensembl chr17:764,309...770,548 		JBrowse link
G Dicer1 dicer 1 ribonuclease III acts_upstream_of_or_within ISO MGI:3641051 (PMID:16682203) RGD PMID:16682203 NCBI chr 6:129,392,298...129,457,252
Ensembl chr 6:123,631,250...123,693,965 		JBrowse link
G Dlx3 distal-less homeobox 3 involved_in ISO
IEA 		MGI:3813130|MGI:3813133 (PMID:18684741)
GO_REF:0000107 		RGD
Ensembl		 PMID:18684741 GO_REF:0000107 NCBI chr10:80,561,335...80,566,730
Ensembl chr10:80,064,489...80,069,872 		JBrowse link
G Dsc1 desmocollin 1 involved_in IEA
ISO 		GO_REF:0000107
(PMID:11714727) 		Ensembl
RGD		 PMID:11714727 GO_REF:0000107 NCBI chr18:11,774,711...11,831,868
Ensembl chr18:11,502,003...11,528,494 		JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO
IEA 		(PMID:25053416)
GO_REF:0000107 		RGD
Ensembl		 PMID:25053416 GO_REF:0000107 NCBI chr 7:86,265,651...86,544,488
Ensembl chr 7:84,375,784...84,655,357 		JBrowse link
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within ISO
IEA 		MGI:1859647 (PMID:11062007)
GO_REF:0000107 		RGD
Ensembl		 PMID:11062007 GO_REF:0000107 NCBI chr 2:52,533,939...52,610,980
Ensembl chr 2:50,800,992...50,876,866 		JBrowse link
G Fgf7 fibroblast growth factor 7 acts_upstream_of_or_within ISO
IEA 		(PMID:11098134)
GO_REF:0000107 		RGD
Ensembl		 PMID:11098134 GO_REF:0000107 NCBI chr 3:133,734,557...133,786,678
Ensembl chr 3:113,281,283...113,332,929 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO MGI:2153818 (PMID:14530295) RGD PMID:14530295 NCBI chr 1:194,175,703...194,280,914
Ensembl chr 1:184,745,420...184,850,626 		JBrowse link
G Foxe1 forkhead box E1 acts_upstream_of_or_within ISO
IEA 		MGI:2181780 (PMID:15367491)
GO_REF:0000107 		RGD
Ensembl		 PMID:15367491 GO_REF:0000107 NCBI chr 5:60,630,027...60,632,835
Ensembl chr 5:60,630,027...60,632,835 		JBrowse link
G Foxq1 forkhead box Q1 acts_upstream_of_or_within ISO
IEA 		MGI:2176727 (PMID:11309849)
GO_REF:0000107 		RGD
Ensembl		 PMID:11309849 GO_REF:0000107 NCBI chr17:32,912,744...32,915,377
Ensembl chr17:32,912,744...32,915,377
Ensembl chr17:32,912,744...32,915,377 		JBrowse link
G Fst follistatin acts_upstream_of_or_within ISO
IEA 		MGI:1857467 (PMID:12514121)
GO_REF:0000107 		RGD
Ensembl		 PMID:12514121 GO_REF:0000107 NCBI chr 2:47,856,345...47,863,670
Ensembl chr 2:46,123,439...46,130,571 		JBrowse link
G Gli2 GLI family zinc finger 2 involved_in ISO (PMID:15994174) RGD PMID:15994174 NCBI chr13:32,499,678...32,716,418
Ensembl chr13:29,946,809...30,163,574 		JBrowse link
G Gorab golgin, RAB6-interacting acts_upstream_of_or_within ISO
IEA 		(PMID:26967474)
GO_REF:0000107 		RGD
Ensembl		 PMID:26967474 GO_REF:0000107 NCBI chr13:75,745,678...75,762,307
Ensembl chr13:75,745,680...75,762,298 		JBrowse link
G Igfbp5 insulin-like growth factor binding protein 5 acts_upstream_of_or_within ISO
IEA 		(PMID:16024235)
GO_REF:0000107 		RGD
Ensembl		 PMID:16024235 GO_REF:0000107 NCBI chr 9:74,452,371...74,464,953
Ensembl chr 9:74,448,382...74,465,156 		JBrowse link
G Intu inturned planar cell polarity protein acts_upstream_of_or_within ISO
IEA 		MGI:4441401 (PMID:22935613)
GO_REF:0000107 		RGD
Ensembl		 PMID:22935613 GO_REF:0000107 NCBI chr 2:123,600,972...123,685,331
Ensembl chr 2:123,609,807...123,682,676 		JBrowse link
G Krt17 keratin 17 involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:12050118) 		UniProt
Ensembl
RGD		 PMID:12050118 GO_REF:0000024 GO_REF:0000107 NCBI chr10:85,178,673...85,183,392
Ensembl chr10:85,178,675...85,183,392 		JBrowse link
G Krt25 keratin 25 involved_in
acts_upstream_of_or_within 		IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000107
MGI:3707007 (PMID:17920809) 		GO_Central
Ensembl
RGD		 PMID:17920809 GO_REF:0000033 GO_REF:0000107 NCBI chr10:84,267,399...84,275,025
Ensembl chr10:84,267,399...84,274,965 		JBrowse link
G Krt27 keratin 27 involved_in
acts_upstream_of_or_within 		IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000107
MGI:1856138 (PMID:17920809) 		GO_Central
Ensembl
RGD		 PMID:17920809 GO_REF:0000033 GO_REF:0000107 NCBI chr10:84,298,684...84,303,967
Ensembl chr10:84,298,508...84,303,967 		JBrowse link
G Krt28 keratin 28 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:84,318,352...84,328,693
Ensembl chr10:84,318,543...84,328,643 		JBrowse link
G Krt71 keratin 71 involved_in ISO (PMID:22592156)
(PMID:14573483) 		RGD PMID:14573483 PMID:22592156 NCBI chr 7:132,873,532...132,898,975
Ensembl chr 7:132,873,540...132,882,325 		JBrowse link
G Krt76 keratin 76 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 7:133,016,990...133,025,475
Ensembl chr 7:133,016,992...133,025,496 		JBrowse link
G Lamc1 laminin subunit gamma 1 involved_in ISO MGI:2683482 (PMID:27234308) RGD PMID:27234308 NCBI chr13:65,374,372...65,501,492
Ensembl chr13:65,374,372...65,501,492 		JBrowse link
G Naglu N-acetyl-alpha-glucosaminidase acts_upstream_of_or_within ISO
IEA 		MGI:1934018 (PMID:19632871)
GO_REF:0000107 		RGD
Ensembl		 PMID:19632871 GO_REF:0000107 NCBI chr10:86,501,864...86,509,333
Ensembl chr10:86,001,566...86,008,972 		JBrowse link
G Ngfr nerve growth factor receptor acts_upstream_of_or_within ISO
IEA 		MGI:1857226 (PMID:10588868)
GO_REF:0000107 		RGD
Ensembl		 PMID:10588868 GO_REF:0000107 NCBI chr10:81,012,077...81,030,305
Ensembl chr10:80,515,299...80,533,518 		JBrowse link
G Notch1 notch receptor 1 acts_upstream_of_or_within ISO
IEA 		MGI:1933835|MGI:2159109|MGI:2177413|MGI:3044585 (PMID:15525534), (PMID:15978571)
GO_REF:0000107 		RGD
Ensembl		 PMID:15525534 PMID:15978571 GO_REF:0000107 NCBI chr 3:29,676,040...29,721,613
Ensembl chr 3:9,278,086...9,323,531 		JBrowse link
G Pla2g10 phospholipase A2, group X involved_in IEA
ISO 		GO_REF:0000107
(PMID:21266583) 		Ensembl
RGD		 PMID:21266583 GO_REF:0000107 NCBI chr10:2,104,927...2,117,998
Ensembl chr10:1,597,761...1,609,000 		JBrowse link
G Runx1 RUNX family transcription factor 1 acts_upstream_of_or_within ISO MGI:3043614 (PMID:17011173) RGD PMID:17011173 NCBI chr11:45,325,778...45,560,300
Ensembl chr11:31,843,764...32,074,542 		JBrowse link
G Runx3 RUNX family transcription factor 3 acts_upstream_of_or_within ISO MGI:2183399 (PMID:15937937) RGD PMID:15937937 NCBI chr 5:152,644,270...152,702,835
Ensembl chr 5:147,360,994...147,419,156 		JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO
IEA 		MGI:1857796|MGI:1934261 (PMID:11520664), (PMID:14623238), (PMID:9768360)
GO_REF:0000107 		RGD
Ensembl		 PMID:9768360 PMID:11520664 PMID:14623238 GO_REF:0000107 NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
G Smo smoothened, frizzled class receptor acts_upstream_of_or_within ISO
IEA 		MGI:1934268|MGI:2445832 (PMID:17199044)
GO_REF:0000107 		RGD
Ensembl		 PMID:17199044 GO_REF:0000107 NCBI chr 4:59,311,084...59,341,280
Ensembl chr 4:58,343,529...58,373,829 		JBrowse link
G Snai1 snail family transcriptional repressor 1 acts_upstream_of_or_within ISO
IEA 		(PMID:15630473)
GO_REF:0000107 		RGD
Ensembl		 PMID:15630473 GO_REF:0000107 NCBI chr 3:176,667,476...176,671,965
Ensembl chr 3:156,248,485...156,252,969 		JBrowse link
G Sostdc1 sclerostin domain containing 1 acts_upstream_of_or_within ISO
IEA 		MGI:3604658 (PMID:22509524)
GO_REF:0000107 		RGD
Ensembl		 PMID:22509524 GO_REF:0000107 NCBI chr 6:58,778,623...58,782,797
Ensembl chr 6:53,051,354...53,055,579 		JBrowse link
G Tgfb2 transforming growth factor, beta 2 involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:10433821) 		UniProt
Ensembl
RGD		 PMID:10433821 GO_REF:0000024 GO_REF:0000107 NCBI chr13:100,691,540...100,793,227
Ensembl chr13:98,160,087...98,261,405 		JBrowse link
G Tmem79 transmembrane protein 79 acts_upstream_of_or_within ISO
IEA 		MGI:1856947 (PMID:24084074)
GO_REF:0000107 		RGD
Ensembl		 PMID:24084074 GO_REF:0000107 NCBI chr 2:173,798,267...173,803,151
Ensembl chr 2:173,798,267...173,803,046 		JBrowse link
G Tp63 tumor protein p63 acts_upstream_of_or_within ISO
IEA 		MGI:1934580 (PMID:16524929)
GO_REF:0000107 		RGD
Ensembl		 PMID:16524929 GO_REF:0000107 NCBI chr11:88,343,647...88,554,543
Ensembl chr11:74,838,859...75,049,398 		JBrowse link
G Wnt10a Wnt family member 10A involved_in ISO
IEA 		(PMID:20163410)
GO_REF:0000107 		RGD
Ensembl		 PMID:20163410 GO_REF:0000107 NCBI chr 9:83,798,594...83,811,060
Ensembl chr 9:76,349,931...76,362,400 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20543
    developmental process 7160
      anatomical structure morphogenesis 3019
        tissue morphogenesis 717
          morphogenesis of an epithelium 591
            epidermis morphogenesis 45
              epidermis morphogenesis involved in nipple formation 0
              hair follicle morphogenesis 39
Path 2
Term Annotations click to browse term
  biological_process 20543
    developmental process 7160
      anatomical structure development 6656
        tissue development 2325
          tissue morphogenesis 717
            morphogenesis of an epithelium 591
              epidermis morphogenesis 45
                epidermis morphogenesis involved in nipple formation 0
                hair follicle morphogenesis 39
paths to the root