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ONTOLOGY REPORT - ANNOTATIONS


Term:epidermis morphogenesis
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Accession:GO:0048730 term browser browse the term
Definition:The process in which the anatomical structures of the epidermis are generated and organized. The epidermis is the outer epithelial layer of an animal, it may be a single layer that produces an extracellular material (e.g. the cuticle of arthropods) or a complex stratified squamous epithelium, as in the case of many vertebrate species.
Synonyms:related_synonym: hypodermis morphogenesis



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epidermis morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dicer1 dicer 1 ribonuclease III acts_upstream_of_or_within ISO MGI:3641051 (MGI:3639807|PMID:16682203) RGD PMID:16682203 MGI:3639807 NCBI chr 6:123,627,529...123,692,278
Ensembl chr 6:123,631,250...123,693,965
JBrowse link
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within ISO MGI:1927833 (MGI:2676027|PMID:14530295) RGD PMID:14530295 MGI:2676027 NCBI chr 2:50,801,897...50,875,428
Ensembl chr 2:50,800,992...50,876,866
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO MGI:2153818 (MGI:2676027|PMID:14530295) RGD PMID:14530295 MGI:2676027 NCBI chr 1:184,745,418...184,850,655
Ensembl chr 1:184,745,420...184,850,626
JBrowse link
G Flg2 filaggrin 2 involved_in ISO (PMID:29505760), (PMID:29758285) RGD PMID:29505760 PMID:29758285 NCBI chr 2:178,789,792...178,802,232 JBrowse link
G Klf4 Kruppel like factor 4 acts_upstream_of_or_within ISO MGI:2183936 (MGI:1341450|PMID:10431239) RGD PMID:10431239 MGI:1341450 NCBI chr 5:70,278,843...70,283,751
Ensembl chr 5:70,278,972...70,283,602
JBrowse link
G Klk14 kallikrein related-peptidase 14 involved_in IBA
ISO
PMID:21873635
(PMID:17158887)
RGD PMID:17158887 PMID:21873635 RGD:13792537 NCBI chr 1:94,123,131...94,137,239
Ensembl chr 1:94,131,998...94,137,240
JBrowse link
G Plod3 procollagen-lysine, 2-oxoglutarate 5-dioxygenase 3 acts_upstream_of_or_within ISO MGI:3620603 (MGI:3618677|PMID:16467571) RGD PMID:16467571 MGI:3618677 NCBI chr12:19,676,384...19,686,945
Ensembl chr12:19,676,386...19,686,960
JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 acts_upstream_of_or_within ISO MGI:2177413|MGI:3605892 (MGI:3604915|PMID:16192310) RGD PMID:16192310 MGI:3604915 NCBI chr 8:20,167,717...20,258,975
Ensembl chr 8:20,167,717...20,258,975
JBrowse link
G Tfap2a transcription factor AP-2 alpha acts_upstream_of_or_within ISO MGI:3038304 (MGI:3616382|PMID:16449191) RGD PMID:16449191 MGI:3616382 NCBI chr17:24,028,716...24,047,507
Ensembl chr17:24,024,432...24,047,507
JBrowse link
G Wnt10a Wnt family member 10A involved_in ISO (PMID:20163410) RGD PMID:20163410 NCBI chr 9:76,349,931...76,362,400
Ensembl chr 9:76,349,931...76,362,400
JBrowse link
hair follicle morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp7a ATPase copper transporting alpha acts_upstream_of_or_within ISO MGI:1856099|MGI:1856466 (MGI:71790|PMID:2473662) RGD PMID:2473662 MGI:61157 MGI:71790 NCBI chr  X:71,094,144...71,201,550
Ensembl chr  X:71,094,202...71,198,354
JBrowse link
G Bcl2 BCL2, apoptosis regulator involved_in IEA
ISO
GO_REF:0000107
(MGI:63353|PMID:8402909)
Ensembl
RGD
PMID:8402909 GO_REF:0000107 MGI:63353 NCBI chr13:22,689,783...22,853,920 JBrowse link
G Ctnnb1 catenin beta 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2148567|MGI:2148594|MGI:2148596|MGI:5461544 (MGI:1934694|PMID:11371349), (MGI:5545676|PMID:24309208)
Ensembl
RGD
PMID:11371349 PMID:24309208 GO_REF:0000107 MGI:1934694 MGI:5545676 NCBI chr 8:120,640,008...120,667,110
Ensembl chr 8:120,639,995...120,667,111
JBrowse link
G Ctsl cathepsin L acts_upstream_of_or_within ISO MGI:2136432 (MGI:2136433|PMID:11023992) RGD PMID:11023992 MGI:2136433 NCBI chr17:764,370...770,533
Ensembl chr17:764,309...770,548
JBrowse link
G Dicer1 dicer 1 ribonuclease III acts_upstream_of_or_within ISO MGI:3641051 (MGI:3639807|PMID:16682203) RGD PMID:16682203 MGI:3639807 NCBI chr 6:123,627,529...123,692,278
Ensembl chr 6:123,631,250...123,693,965
JBrowse link
G Dlx3 distal-less homeobox 3 involved_in ISO MGI:3813130|MGI:3813133 (MGI:3812269|PMID:18684741) RGD PMID:18684741 MGI:3812269 NCBI chr10:80,064,489...80,069,891
Ensembl chr10:80,064,489...80,069,872
JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO (MGI:5609888|PMID:25053416) RGD PMID:25053416 MGI:5609888 NCBI chr 7:84,375,769...84,654,625
Ensembl chr 7:84,375,784...84,655,357
JBrowse link
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within ISO MGI:1859647 (MGI:3688470|PMID:11062007) RGD PMID:11062007 MGI:3688470 NCBI chr 2:50,801,897...50,875,428
Ensembl chr 2:50,800,992...50,876,866
JBrowse link
G Fgf7 fibroblast growth factor 7 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:1933622|PMID:11098134)
Ensembl
RGD
PMID:11098134 GO_REF:0000107 MGI:1933622 NCBI chr 3:113,280,448...113,333,279
Ensembl chr 3:113,281,283...113,332,929
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO MGI:2153818 (MGI:2676027|PMID:14530295) RGD PMID:14530295 MGI:2676027 NCBI chr 1:184,745,418...184,850,655
Ensembl chr 1:184,745,420...184,850,626
JBrowse link
G Foxe1 forkhead box E1 acts_upstream_of_or_within ISO MGI:2181780 (MGI:3056991|PMID:15367491) RGD PMID:15367491 MGI:3056991 NCBI chr 5:60,630,027...60,632,835
Ensembl chr 5:60,630,027...60,632,835
JBrowse link
G Foxq1 forkhead box Q1 acts_upstream_of_or_within ISO MGI:2176727 (MGI:2176575|PMID:11309849) RGD PMID:11309849 MGI:2176575 NCBI chr17:32,912,744...32,915,377
Ensembl chr17:32,912,744...32,915,377
Ensembl chr17:32,912,744...32,915,377
JBrowse link
G Fst follistatin acts_upstream_of_or_within ISO MGI:1857467 (MGI:3699694|PMID:12514121) RGD PMID:12514121 MGI:3699694 NCBI chr 2:46,123,260...46,130,584
Ensembl chr 2:46,123,439...46,130,571
JBrowse link
G Gli2 GLI family zinc finger 2 involved_in ISO (PMID:15994174) RGD PMID:15994174 NCBI chr13:29,946,809...30,163,901
Ensembl chr13:29,946,809...30,163,574
JBrowse link
G Gorab golgin, RAB6-interacting acts_upstream_of_or_within ISO (MGI:5766823|PMID:26967474) RGD PMID:26967474 MGI:5766823 NCBI chr13:75,745,678...75,762,307
Ensembl chr13:75,745,680...75,762,298
JBrowse link
G Igfbp5 insulin-like growth factor binding protein 5 acts_upstream_of_or_within ISO (MGI:3589307|PMID:16024235) RGD PMID:16024235 MGI:3589307 NCBI chr 9:74,452,371...74,464,953
Ensembl chr 9:74,448,382...74,465,156
JBrowse link
G Intu inturned planar cell polarity protein involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:4441401 (MGI:5545722|PMID:22935613)
Ensembl
RGD
PMID:22935613 GO_REF:0000107 MGI:5545722 NCBI chr 2:123,600,972...123,685,331
Ensembl chr 2:123,609,807...123,682,676
JBrowse link
G Krt17 keratin 17 involved_in ISS
ISO
GO_REF:0000024
(MGI:2450823|PMID:12050118)
UniProt
RGD
PMID:12050118 GO_REF:0000024 MGI:2450823 NCBI chr10:85,178,673...85,183,392
Ensembl chr10:85,178,675...85,183,392
JBrowse link
G Krt25 keratin 25 acts_upstream_of_or_within ISO MGI:3707007 (MGI:3770737|PMID:17920809) RGD PMID:17920809 MGI:3770737 NCBI chr10:84,267,600...84,276,312
Ensembl chr10:84,267,399...84,274,965
JBrowse link
G Krt27 keratin 27 acts_upstream_of_or_within ISO MGI:1856138 (MGI:3770737|PMID:17920809) RGD PMID:17920809 MGI:3770737 NCBI chr10:84,298,684...84,303,967
Ensembl chr10:84,298,508...84,303,967
JBrowse link
G Krt71 keratin 71 involved_in ISO (PMID:22592156)
(MGI:2679780|PMID:14573483)
RGD PMID:14573483 PMID:22592156 MGI:2679780 NCBI chr 7:132,873,532...132,898,975
Ensembl chr 7:132,873,540...132,882,325
JBrowse link
G Lamc1 laminin subunit gamma 1 involved_in ISO MGI:2683482 (MGI:5828725|PMID:27234308) RGD PMID:27234308 MGI:5828725 NCBI chr13:65,374,372...65,501,492
Ensembl chr13:65,374,372...65,501,492
JBrowse link
G Ngfr nerve growth factor receptor involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857226 (MGI:1350519|PMID:10588868)
Ensembl
RGD
PMID:10588868 GO_REF:0000107 MGI:1350519 NCBI chr10:80,515,287...80,533,518
Ensembl chr10:80,515,299...80,533,518
JBrowse link
G Notch1 notch receptor 1 acts_upstream_of_or_within ISO MGI:1933835|MGI:2159109|MGI:2177413|MGI:3044585 (MGI:3513219|PMID:15525534), (MGI:3588883|PMID:15978571) RGD PMID:15525534 PMID:15978571 MGI:3513219 MGI:3588883 NCBI chr 3:9,277,955...9,323,531
Ensembl chr 3:9,278,086...9,323,531
JBrowse link
G Pla2g10 phospholipase A2, group X involved_in IEA
ISO
GO_REF:0000107
(MGI:4947921|PMID:21266583)
Ensembl
RGD
PMID:21266583 GO_REF:0000107 MGI:4947921 NCBI chr10:1,597,761...1,610,822
Ensembl chr10:1,597,761...1,609,000
JBrowse link
G Runx1 RUNX family transcription factor 1 acts_upstream_of_or_within ISO MGI:3043614 (MGI:3692798|PMID:17011173) RGD PMID:17011173 MGI:3692798 NCBI chr11:31,839,880...32,074,427
Ensembl chr11:31,843,764...32,074,542
JBrowse link
G Runx3 RUNX family transcription factor 3 acts_upstream_of_or_within ISO MGI:2183399 (MGI:3583033|PMID:15937937) RGD PMID:15937937 MGI:3583033 NCBI chr 5:147,393,926...147,419,161
Ensembl chr 5:147,360,994...147,419,156
JBrowse link
G Shh sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857796|MGI:1934261 (MGI:1289785|PMID:9768360), (MGI:2149936|PMID:11520664), (MGI:2681050|PMID:14623238)
Ensembl
RGD
PMID:9768360 PMID:11520664 PMID:14623238 GO_REF:0000107 MGI:1289785 MGI:2149936 MGI:2681050 NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170
JBrowse link
G Smo smoothened, frizzled class receptor involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1934268|MGI:2445832 (MGI:3696007|PMID:17199044)
Ensembl
RGD
PMID:17199044 GO_REF:0000107 MGI:3696007 NCBI chr 4:58,344,101...58,372,828
Ensembl chr 4:58,343,529...58,373,829
JBrowse link
G Snai1 snail family transcriptional repressor 1 acts_upstream_of_or_within ISO (MGI:3576202|PMID:15630473) RGD PMID:15630473 MGI:3576202 NCBI chr 3:156,248,479...156,252,969
Ensembl chr 3:156,248,485...156,252,969
JBrowse link
G Sostdc1 sclerostin domain containing 1 acts_upstream_of_or_within ISO MGI:3604658 (MGI:5319554|PMID:22509524) RGD PMID:22509524 MGI:5319554 NCBI chr 6:53,051,336...53,055,510
Ensembl chr 6:53,051,354...53,055,579
JBrowse link
G Tgfb2 transforming growth factor, beta 2 involved_in ISS
ISO
GO_REF:0000024
(MGI:1342915|PMID:10433821)
UniProt
RGD
PMID:10433821 GO_REF:0000024 MGI:1342915 NCBI chr13:98,160,075...98,261,771
Ensembl chr13:98,160,087...98,261,405
JBrowse link
G Tmem79 transmembrane protein 79 acts_upstream_of_or_within ISO MGI:1856947 (MGI:5519142|PMID:24084074) RGD PMID:24084074 MGI:5519142 NCBI chr 2:173,798,267...173,803,151
Ensembl chr 2:173,798,267...173,803,046
JBrowse link
G Tp63 tumor protein p63 acts_upstream_of_or_within ISO MGI:1934580 (MGI:3621088|PMID:16524929) RGD PMID:16524929 MGI:3621088 NCBI chr11:74,838,858...75,049,764
Ensembl chr11:74,838,859...75,049,398
JBrowse link
G Wnt10a Wnt family member 10A involved_in ISO (PMID:20163410) RGD PMID:20163410 NCBI chr 9:76,349,931...76,362,400
Ensembl chr 9:76,349,931...76,362,400
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19834
    developmental process 6965
      anatomical structure morphogenesis 2925
        tissue morphogenesis 719
          morphogenesis of an epithelium 604
            epidermis morphogenesis 41
              epidermis morphogenesis involved in nipple formation 0
              hair follicle morphogenesis 35
Path 2
Term Annotations click to browse term
  biological_process 19834
    developmental process 6965
      anatomical structure development 6376
        tissue development 2148
          tissue morphogenesis 719
            morphogenesis of an epithelium 604
              epidermis morphogenesis 41
                epidermis morphogenesis involved in nipple formation 0
                hair follicle morphogenesis 35
paths to the root