Send us a Message



 Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap)  (beta) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer) Overgo Probe Designer
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models PhenoMiner (Quantitative Phenotypes) Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Poster Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:embryonic skeletal system development
go back to main search page
Accession:GO:0048706 term browser browse the term
Definition:The process, occurring during the embryonic phase, whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure.
Synonyms:exact_synonym: embryonic skeletal development

GViewer not supported for the selected species.

show annotations for term's descendants           Sort by:
embryonic skeletal system development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr2a activin A receptor type 2A acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:71660|PMID:7885474) MGI
Ensembl		 PMID:7885474 GO_REF:0000107 MGI:71660 NCBI chrNW_004936469:29,195,329...29,273,237
Ensembl chrNW_004936469:29,194,908...29,273,196 		JBrowse link
G Bmi1 BMI1 proto-oncogene, polycomb ring finger acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1932296|PMID:11290297) MGI
Ensembl		 PMID:11290297 GO_REF:0000107 MGI:1932296 NCBI chrNW_004936520:5,707,542...5,716,966
Ensembl chrNW_004936520:5,707,778...5,717,024 		JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3640733|PMID:16712836) MGI
Ensembl		 PMID:16712836 GO_REF:0000107 MGI:3640733 NCBI chrNW_004936697:1,054,237...1,061,468
Ensembl chrNW_004936697:1,056,636...1,061,468 		JBrowse link
G Cdk20 cyclin dependent kinase 20 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:5912686|PMID:28817564) MGI
Ensembl		 PMID:28817564 GO_REF:0000107 MGI:5912686 NCBI chrNW_004936854:810,996...817,136
Ensembl chrNW_004936854:812,575...817,202 		JBrowse link
G Col1a1 collagen type I alpha 1 chain involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:11,448,552...11,465,836
Ensembl chrNW_004936490:11,448,654...11,464,444 		JBrowse link
G Deaf1 DEAF1 transcription factor involved_in ISO (MGI:3029622|PMID:14966286) UniProt PMID:14966286 MGI:3029622 NCBI chrNW_004936888:473,651...497,152
Ensembl chrNW_004936888:473,974...497,158 		JBrowse link
G Dlk1 delta like non-canonical Notch ligand 1 acts_upstream_of_or_within ISO (MGI:3838429|PMID:19247431) MGI PMID:19247431 MGI:3838429 NCBI chrNW_004936604:4,504,519...4,511,897
Ensembl chrNW_004936604:4,504,503...4,511,910 		JBrowse link
G Dlx1 distal-less homeobox 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:87771|PMID:9187081) MGI
Ensembl		 PMID:9187081 GO_REF:0000107 MGI:87771 NCBI chrNW_004936509:2,248,181...2,250,991
Ensembl chrNW_004936509:2,248,181...2,250,991 		JBrowse link
G Dlx2 distal-less homeobox 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:87771|PMID:9187081) MGI
Ensembl		 PMID:9187081 GO_REF:0000107 MGI:87771 NCBI chrNW_004936509:2,262,873...2,265,391
Ensembl chrNW_004936509:2,262,873...2,265,391 		JBrowse link
G Dmrt2 doublesex and mab-3 related transcription factor 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3613100|PMID:16387292) MGI
Ensembl		 PMID:16387292 GO_REF:0000107 MGI:3613100 NCBI chrNW_004936503:3,857,165...3,864,130
Ensembl chrNW_004936503:3,857,165...3,864,147 		JBrowse link
G Ednra endothelin receptor type A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936535:1,950,117...2,005,786
Ensembl chrNW_004936535:1,949,941...2,005,910 		JBrowse link
G Fgf9 fibroblast growth factor 9 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3716021|PMID:17544391) MGI
Ensembl		 PMID:17544391 GO_REF:0000107 MGI:3716021 NCBI chrNW_004936720:282,291...316,629
Ensembl chrNW_004936720:279,521...316,674 		JBrowse link
G Hand2 heart and neural crest derivatives expressed 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936516:4,692,926...4,695,625
Ensembl chrNW_004936516:4,692,926...4,695,632 		JBrowse link
G Hoxa2 homeobox A2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936478:3,729,079...3,731,353
Ensembl chrNW_004936478:3,729,107...3,730,870 		JBrowse link
G Hoxa3 homeobox A3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:67616|PMID:7913519) MGI
Ensembl		 PMID:7913519 GO_REF:0000107 MGI:67616 NCBI chrNW_004936478:3,735,509...3,767,899
Ensembl chrNW_004936478:3,735,505...3,767,899 		JBrowse link
G Hoxa5 homeobox A5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:3720535|PMID:17626057) Ensembl
MGI		 PMID:17626057 GO_REF:0000107 MGI:3720535 NCBI chrNW_004936478:3,768,757...3,771,850
Ensembl chrNW_004936478:3,769,258...3,771,840 		JBrowse link
G Hoxa6 homeobox A6 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3720535|PMID:17626057) MGI
Ensembl		 PMID:17626057 GO_REF:0000107 MGI:3720535 NCBI chrNW_004936478:3,773,131...3,775,461
Ensembl chrNW_004936478:3,772,773...3,775,707 		JBrowse link
G Hoxa9 homeobox A9 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:78984|PMID:8625797)
(MGI:3720535|PMID:17626057)
(MGI:85243|PMID:9013929)		 MGI
Ensembl		 PMID:8625797 PMID:9013929 PMID:17626057 GO_REF:0000107 MGI:3720535 MGI:78984 MGI:85243 NCBI chrNW_004936478:3,789,961...3,793,116
Ensembl chrNW_004936478:3,789,961...3,793,845 		JBrowse link
G Hoxb5 homeobox B5 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3720535|PMID:17626057) MGI
Ensembl		 PMID:17626057 GO_REF:0000107 MGI:3720535 NCBI chrNW_004936490:12,793,485...12,796,219
Ensembl chrNW_004936490:12,793,485...12,796,219 		JBrowse link
G Hoxb6 homeobox B6 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:70296|PMID:7828847)
(MGI:3720535|PMID:17626057)		 MGI
Ensembl		 PMID:7828847 PMID:17626057 GO_REF:0000107 MGI:3720535 MGI:70296 NCBI chrNW_004936490:12,782,864...12,791,743
Ensembl chrNW_004936490:12,789,173...12,791,759 		JBrowse link
G Hoxb9 homeobox B9 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3720535|PMID:17626057)
(MGI:1859107|PMID:10885747)
(MGI:85243|PMID:9013929)		 MGI
Ensembl		 PMID:9013929 PMID:10885747 PMID:17626057 GO_REF:0000107 MGI:1859107 MGI:3720535 MGI:85243 NCBI chrNW_004936490:12,761,668...12,765,658
Ensembl chrNW_004936490:12,761,522...12,766,657 		JBrowse link
G Hoxc5 homeobox C5 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3720535|PMID:17626057) MGI
Ensembl		 PMID:17626057 GO_REF:0000107 MGI:3720535 NCBI chrNW_004936512:11,254,959...11,258,702
Ensembl chrNW_004936512:11,254,942...11,258,702 		JBrowse link
G Hoxc6 homeobox C6 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3720535|PMID:17626057) MGI
Ensembl		 PMID:17626057 GO_REF:0000107 MGI:3720535 NCBI chrNW_004936512:11,238,905...11,252,750
Ensembl chrNW_004936512:11,250,326...11,252,750 		JBrowse link
G Hoxc9 homeobox C9 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3720535|PMID:17626057) MGI
Ensembl		 PMID:17626057 GO_REF:0000107 MGI:3720535 NCBI chrNW_004936512:11,222,120...11,225,455
Ensembl chrNW_004936512:11,217,547...11,225,455 		JBrowse link
G Hoxd1 homeobox D1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:2137767|PMID:11511348) MGI
Ensembl		 PMID:11511348 GO_REF:0000107 MGI:2137767 NCBI chrNW_004936509:5,673,184...5,674,636
Ensembl chrNW_004936509:5,673,184...5,674,521 		JBrowse link
G Hoxd9 homeobox D9 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3720535|PMID:17626057)
(MGI:78984|PMID:8625797)		 MGI
Ensembl		 PMID:8625797 PMID:17626057 GO_REF:0000107 MGI:3720535 MGI:78984 NCBI chrNW_004936509:5,609,744...5,611,943
Ensembl chrNW_004936509:5,609,744...5,611,943 		JBrowse link
G Hsd17b7 hydroxysteroid 17-beta dehydrogenase 7 acts_upstream_of_or_within ISO (MGI:5050793|PMID:21515572) MGI PMID:21515572 MGI:5050793 NCBI chrNW_004936831:951,603...976,159
Ensembl chrNW_004936831:951,562...977,208 		JBrowse link
G Kiaa1217 KIAA1217 ortholog involved_in ISO (MGI:3614233|PMID:16204209) UniProt PMID:16204209 MGI:3614233 NCBI chrNW_004936484:33,125...319,136
Ensembl chrNW_004936484:33,086...319,307 		JBrowse link
G Mbtd1 mbt domain containing 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:4939865|PMID:21252303) MGI
Ensembl		 PMID:21252303 GO_REF:0000107 MGI:4939865 NCBI chrNW_004936490:10,567,146...10,633,130
Ensembl chrNW_004936490:10,587,010...10,630,049 		JBrowse link
G Mks1 MKS transition zone complex subunit 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:4868517|PMID:21045211) MGI
Ensembl		 PMID:21045211 GO_REF:0000107 MGI:4868517 NCBI chrNW_004936490:4,865,243...4,876,601
Ensembl chrNW_004936490:4,865,243...4,878,912 		JBrowse link
G Nkx3-2 NK3 homeobox 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1347483|PMID:10572046)
(MGI:1343724|PMID:10449756)		 MGI
Ensembl		 PMID:10449756 PMID:10572046 GO_REF:0000107 MGI:1343724 MGI:1347483 NCBI chrNW_004936477:13,999,045...14,001,659
Ensembl chrNW_004936477:13,999,045...14,001,659 		JBrowse link
G Nog noggin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:6,262,651...6,264,069
Ensembl chrNW_004936490:6,262,785...6,263,483 		JBrowse link
G Pax7 paired box 7 acts_upstream_of_or_within ISO (MGI:79520|PMID:8631261) MGI PMID:8631261 MGI:79520 NCBI chrNW_004936474:5,045,284...5,131,859
Ensembl chrNW_004936474:5,045,284...5,131,859 		JBrowse link
G Pbx1 PBX homeobox 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:2151355|PMID:11566859) MGI
Ensembl		 PMID:11566859 GO_REF:0000107 MGI:2151355 NCBI chrNW_004936481:20,200,236...20,440,623
Ensembl chrNW_004936481:20,203,405...20,440,629 		JBrowse link
G Pcgf2 polycomb group ring finger 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1932296|PMID:11290297) MGI
Ensembl		 PMID:11290297 GO_REF:0000107 MGI:1932296 NCBI chrNW_004936490:14,139,125...14,150,377
Ensembl chrNW_004936490:14,138,980...14,150,756 		JBrowse link
G Pcsk5 proprotein convertase subtilisin/kexin type 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936503:11,466,955...11,896,887
Ensembl chrNW_004936503:11,466,950...11,896,887 		JBrowse link
G Rbp4 retinol binding protein 4 involved_in ISO (MGI:3604178|PMID:15994349) BHF-UCL PMID:15994349 MGI:3604178 NCBI chrNW_004936601:1,401,215...1,410,195
Ensembl chrNW_004936601:1,402,691...1,410,208 		JBrowse link
G Scx scleraxis bHLH transcription factor involved_in ISO (MGI:72077|PMID:7743923) UniProt PMID:7743923 MGI:72077 NCBI chrNW_004936470:7,966,096...7,972,379 JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3710451|PMID:17504941) MGI
Ensembl		 PMID:17504941 GO_REF:0000107 MGI:3710451 NCBI chrNW_004936527:10,033,095...10,042,713
Ensembl chrNW_004936527:10,033,299...10,042,599 		JBrowse link
G Slc35d1 solute carrier family 35 member D1 acts_upstream_of_or_within ISO (MGI:3771453|PMID:17952091) MGI PMID:17952091 MGI:3771453 NCBI chrNW_004936591:4,519,136...4,574,925
Ensembl chrNW_004936591:4,531,403...4,570,631 		JBrowse link
G Sp1 Sp1 transcription factor acts_upstream_of_or_within ISO (MGI:3717030|PMID:17584888) MGI PMID:17584888 MGI:3717030 NCBI chrNW_004936512:10,655,116...10,693,025
Ensembl chrNW_004936512:10,655,349...10,693,042 		JBrowse link
G Sp3 Sp3 transcription factor acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3717030|PMID:17584888) MGI
Ensembl		 PMID:17584888 GO_REF:0000107 MGI:3717030 NCBI chrNW_004936509:3,740,393...3,782,873
Ensembl chrNW_004936509:3,741,836...3,793,136 		JBrowse link
G Sulf1 sulfatase 1 involved_in IEA Ensembl
UniProt		 GO_REF:0000104 GO_REF:0000107 NCBI chrNW_004936496:4,755,806...4,931,964
Ensembl chrNW_004936496:4,755,754...4,893,027 		JBrowse link
G Sulf2 sulfatase 2 involved_in IEA Ensembl
UniProt		 GO_REF:0000104 GO_REF:0000107 NCBI chrNW_004936514:5,819,375...5,899,324
Ensembl chrNW_004936514:5,819,400...5,899,316 		JBrowse link
G Tapt1 transmembrane anterior posterior transformation 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3758514|PMID:17151244) MGI
Ensembl		 PMID:17151244 GO_REF:0000107 MGI:3758514 NCBI chrNW_004936477:11,777,657...11,823,296
Ensembl chrNW_004936477:11,777,415...11,823,421 		JBrowse link
G Tbxt T-box transcription factor T acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:64493|PMID:8293872) MGI
Ensembl		 PMID:8293872 GO_REF:0000107 MGI:64493 NCBI chrNW_004936489:16,027,359...16,035,041
Ensembl chrNW_004936489:16,027,359...16,035,041 		JBrowse link
G Wnt11 Wnt family member 11 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936498:4,909,041...4,927,482
Ensembl chrNW_004936498:4,908,978...4,927,165 		JBrowse link
G Wnt5a Wnt family member 5A involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936473:6,031,627...6,052,211
Ensembl chrNW_004936473:6,029,976...6,052,159 		JBrowse link
G Xylt1 xylosyltransferase 1 involved_in ISO (MGI:5544658|PMID:24161523) UniProt PMID:24161523 MGI:5544658 NCBI chrNW_004936501:4,164,714...4,337,604
Ensembl chrNW_004936501:4,187,213...4,331,783 		JBrowse link
embryonic cranial skeleton morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1095762|PMID:9268572) MGI
Ensembl		 PMID:9268572 GO_REF:0000107 MGI:1095762 NCBI chrNW_004936697:1,054,237...1,061,468
Ensembl chrNW_004936697:1,056,636...1,061,468 		JBrowse link
G Dlx2 distal-less homeobox 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:76977|PMID:7590232) MGI
Ensembl		 PMID:7590232 GO_REF:0000107 MGI:76977 NCBI chrNW_004936509:2,262,873...2,265,391
Ensembl chrNW_004936509:2,262,873...2,265,391 		JBrowse link
G Eif4a3 eukaryotic translation initiation factor 4A3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936594:4,148,401...4,160,290
Ensembl chrNW_004936594:4,147,685...4,160,293 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936486:10,506,680...10,606,272
Ensembl chrNW_004936486:10,507,097...10,602,019 		JBrowse link
G Foxc2 forkhead box C2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:86990|PMID:9106663) MGI
Ensembl		 PMID:9106663 GO_REF:0000107 MGI:86990 NCBI chrNW_004936641:2,236,224...2,238,501
Ensembl chrNW_004936641:2,236,873...2,238,375 		JBrowse link
G Grhl2 grainyhead like transcription factor 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:4943100|PMID:21377456) MGI
Ensembl		 PMID:21377456 GO_REF:0000107 MGI:4943100 NCBI chrNW_004936470:41,856,683...41,961,666
Ensembl chrNW_004936470:41,859,035...42,002,844 		JBrowse link
G Ift140 intraflagellar transport 140 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:5505384|PMID:23469164) MGI
Ensembl		 PMID:23469164 GO_REF:0000107 MGI:5505384 NCBI chrNW_004936694:2,344,448...2,419,396
Ensembl chrNW_004936694:2,344,283...2,423,520 		JBrowse link
G Irx5 iroquois homeobox 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:7,354,273...7,358,328
Ensembl chrNW_004936475:7,354,642...7,358,553 		JBrowse link
G LOC101971027 neuroendocrine secretory protein 55 acts_upstream_of_or_within ISO (MGI:3619837|PMID:15797856) MGI PMID:15797856 MGI:3619837 NCBI chrNW_004936530:1,353,432...1,407,437 JBrowse link
G Mmp14 matrix metallopeptidase 14 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3771253|PMID:18022611) MGI
Ensembl		 PMID:18022611 GO_REF:0000107 MGI:3771253 NCBI chrNW_004936722:1,447,189...1,457,632
Ensembl chrNW_004936722:1,447,335...1,457,611 		JBrowse link
G Mmp16 matrix metallopeptidase 16 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3771253|PMID:18022611) MGI
Ensembl		 PMID:18022611 GO_REF:0000107 MGI:3771253 NCBI chrNW_004936544:2,297,698...2,546,683
Ensembl chrNW_004936544:2,298,028...2,546,689 		JBrowse link
G Nipbl NIPBL cohesin loading factor acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:4367301|PMID:19763162) MGI
Ensembl		 PMID:19763162 GO_REF:0000107 MGI:4367301 NCBI chrNW_004936518:4,870,686...5,041,099
Ensembl chrNW_004936518:4,869,546...4,969,450 		JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:2155575|PMID:11311163) MGI
Ensembl		 PMID:11311163 GO_REF:0000107 MGI:2155575 NCBI chrNW_004936521:8,171,146...8,178,802
Ensembl chrNW_004936521:8,171,146...8,178,705 		JBrowse link
G Pax5 paired box 5 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:5476374|PMID:23349049) MGI
Ensembl		 PMID:23349049 GO_REF:0000107 MGI:5476374 NCBI chrNW_004936524:4,700,815...4,887,035
Ensembl chrNW_004936524:4,700,841...4,887,106 		JBrowse link
G Pdgfra platelet derived growth factor receptor alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936482:16,804,129...16,853,539
Ensembl chrNW_004936482:16,807,569...16,853,587 		JBrowse link
G Prrx1 paired related homeobox 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1306737|PMID:9729491)
(MGI:73363|PMID:7758948)		 MGI
Ensembl		 PMID:7758948 PMID:9729491 GO_REF:0000107 MGI:1306737 MGI:73363 NCBI chrNW_004936481:16,208,243...16,272,836
Ensembl chrNW_004936481:16,205,240...16,272,850 		JBrowse link
G Runx2 RUNX family transcription factor 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3042355|PMID:15030764) MGI
Ensembl		 PMID:15030764 GO_REF:0000107 MGI:3042355 NCBI chrNW_004936476:14,695,965...14,818,246
Ensembl chrNW_004936476:14,695,965...14,905,157 		JBrowse link
G Setd2 SET domain containing 2, histone lysine methyltransferase acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:4431136|PMID:20133625) MGI
Ensembl		 PMID:20133625 GO_REF:0000107 MGI:4431136 NCBI chrNW_004936596:795,940...898,823
Ensembl chrNW_004936596:796,601...883,373 		JBrowse link
G Six1 SIX homeobox 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:4822095|PMID:20515681) MGI
Ensembl		 PMID:20515681 GO_REF:0000107 MGI:4822095 NCBI chrNW_004936495:4,839,496...4,842,906
Ensembl chrNW_004936495:4,838,051...4,842,994 		JBrowse link
G Six2 SIX homeobox 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:4822095|PMID:20515681) MGI
Ensembl		 PMID:20515681 GO_REF:0000107 MGI:4822095 NCBI chrNW_004936508:7,047,563...7,051,129
Ensembl chrNW_004936508:7,047,304...7,051,732 		JBrowse link
G Six4 SIX homeobox 4 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:4822095|PMID:20515681) MGI
Ensembl		 PMID:20515681 GO_REF:0000107 MGI:4822095 NCBI chrNW_004936495:4,887,718...4,900,198
Ensembl chrNW_004936495:4,887,718...4,900,198 		JBrowse link
G Slc39a1 solute carrier family 39 member 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3624433|PMID:16652366) MGI
Ensembl		 PMID:16652366 GO_REF:0000107 MGI:3624433 NCBI chrNW_004936580:3,704,738...3,708,671
Ensembl chrNW_004936580:3,704,723...3,708,677 		JBrowse link
G Slc39a3 solute carrier family 39 member 3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3624433|PMID:16652366) MGI
Ensembl		 PMID:16652366 GO_REF:0000107 MGI:3624433 NCBI chrNW_004936588:1,583,884...1,590,656
Ensembl chrNW_004936588:1,584,061...1,588,983 		JBrowse link
G Smad2 SMAD family member 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3618021|PMID:15183723) MGI
Ensembl		 PMID:15183723 GO_REF:0000107 MGI:3618021 NCBI chrNW_004936497:14,723,199...14,812,160
Ensembl chrNW_004936497:14,723,199...14,801,697 		JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3618021|PMID:15183723) MGI
Ensembl		 PMID:15183723 GO_REF:0000107 MGI:3618021 NCBI chrNW_004936471:27,080,662...27,185,861
Ensembl chrNW_004936471:27,080,575...27,189,793 		JBrowse link
G Tbx1 T-box transcription factor 1 acts_upstream_of_or_within ISO (MGI:3050165|PMID:15190012) MGI PMID:15190012 MGI:3050165 NCBI chrNW_004936619:3,662,567...3,670,470
Ensembl chrNW_004936619:3,664,468...3,670,525 		JBrowse link
G Tbx15 T-box transcription factor 15 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3604843|PMID:15728667) MGI
Ensembl		 PMID:15728667 GO_REF:0000107 MGI:3604843 NCBI chrNW_004936627:3,745,399...3,852,861
Ensembl chrNW_004936627:3,745,287...3,853,309 		JBrowse link
G Tfap2a transcription factor AP-2 alpha acts_upstream_of_or_within
involved_in		 ISO (MGI:80520|PMID:8622765)
(MGI:80519|PMID:8622766)		 MGI
UniProt		 PMID:8622765 PMID:8622766 MGI:80519 MGI:80520 NCBI chrNW_004936534:2,481,804...2,518,573
Ensembl chrNW_004936534:2,481,806...2,499,317 		JBrowse link
G Tgfbr1 transforming growth factor beta receptor 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3701721|PMID:16806156) MGI
Ensembl		 PMID:16806156 GO_REF:0000107 MGI:3701721 NCBI chrNW_004936524:7,656,523...7,680,043
Ensembl chrNW_004936524:7,655,847...7,681,097 		JBrowse link
G Tgfbr2 transforming growth factor beta receptor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936473:21,324,669...21,409,430
Ensembl chrNW_004936473:21,324,658...21,409,430 		JBrowse link
G Twist1 twist family bHLH transcription factor 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3042355|PMID:15030764) MGI
Ensembl		 PMID:15030764 GO_REF:0000107 MGI:3042355 NCBI chrNW_004936546:5,331,220...5,332,669
Ensembl chrNW_004936546:5,331,863...5,332,555 		JBrowse link
G Twist2 twist family bHLH transcription factor 2 acts_upstream_of_or_within ISO (MGI:3042355|PMID:15030764) MGI PMID:15030764 MGI:3042355 NCBI chrNW_004936745:2,067,272...2,067,948
Ensembl chrNW_004936745:2,028,286...2,067,948 		JBrowse link
G Wdr19 WD repeat domain 19 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:5314316|PMID:22228095) MGI
Ensembl		 PMID:22228095 GO_REF:0000107 MGI:5314316 NCBI chrNW_004936482:6,863,592...6,937,810
Ensembl chrNW_004936482:6,863,571...6,937,979 		JBrowse link
G Wnt9b Wnt family member 9B acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3588895|PMID:16054034)
(MGI:3696935|PMID:16998816)		 MGI
Ensembl		 PMID:16054034 PMID:16998816 GO_REF:0000107 MGI:3588895 MGI:3696935 NCBI chrNW_004936541:1,899,039...1,939,561
Ensembl chrNW_004936541:1,899,039...1,939,561 		JBrowse link
embryonic neurocranium morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:5796907|PMID:27395007) MGI
Ensembl		 PMID:27395007 GO_REF:0000107 MGI:5796907 NCBI chrNW_004936600:4,004,847...4,010,626
Ensembl chrNW_004936600:4,004,824...4,010,689 		JBrowse link
G Fuz fuzzy planar cell polarity protein acts_upstream_of_or_within ISO (MGI:5796907|PMID:27395007) MGI PMID:27395007 MGI:5796907 NCBI chrNW_004936664:3,596,764...3,601,676
Ensembl chrNW_004936664:3,596,952...3,601,342 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:5796907|PMID:27395007) MGI
Ensembl		 PMID:27395007 GO_REF:0000107 MGI:5796907 NCBI chrNW_004936478:17,129,922...17,403,630
Ensembl chrNW_004936478:17,126,911...17,403,011 		JBrowse link
G Hoxa1 homeobox A1 involved_in ISO (PMID:16155570) DFLAT PMID:16155570 NCBI chrNW_004936478:3,721,662...3,724,471
Ensembl chrNW_004936478:3,721,662...3,724,433 		JBrowse link
G Med12 mediator complex subunit 12 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:4839544|PMID:20589884) MGI
Ensembl		 PMID:20589884 GO_REF:0000107 MGI:4839544 NCBI chrNW_004936762:460,342...483,264
Ensembl chrNW_004936762:460,342...483,195 		JBrowse link
G Mthfd1l methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936489:3,877,423...4,060,129
Ensembl chrNW_004936489:3,876,680...4,051,933 		JBrowse link
G Ndst1 N-deacetylase and N-sulfotransferase 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3588476|PMID:16020517) MGI
Ensembl		 PMID:16020517 GO_REF:0000107 MGI:3588476 NCBI chrNW_004936504:4,413,549...4,495,933
Ensembl chrNW_004936504:4,413,549...4,454,109 		JBrowse link
G Tgfb2 transforming growth factor beta 2 ISO RGD PMID:11002343 RGD:1579866 NCBI chrNW_004936628:310,720...394,002
Ensembl chrNW_004936628:308,691...394,007 		JBrowse link
G Tgfb3 transforming growth factor beta 3 ISO RGD PMID:11002343 RGD:1579866 NCBI chrNW_004936488:4,986,712...5,008,728
Ensembl chrNW_004936488:4,986,748...5,008,496 		JBrowse link
G Tulp3 TUB like protein 3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3841503|PMID:19286674) MGI
Ensembl		 PMID:19286674 GO_REF:0000107 MGI:3841503 NCBI chrNW_004936606:3,209,170...3,278,809
Ensembl chrNW_004936606:3,209,141...3,278,563 		JBrowse link
embryonic skeletal joint development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:4946896|PMID:21185280) MGI
Ensembl		 PMID:21185280 GO_REF:0000107 MGI:4946896 NCBI chrNW_004936470:28,303,213...28,566,470
Ensembl chrNW_004936470:28,303,828...28,566,118 		JBrowse link
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3695832|PMID:17191253) MGI
Ensembl		 PMID:17191253 GO_REF:0000107 MGI:3695832 NCBI chrNW_004936569:1,474,693...1,480,562
Ensembl chrNW_004936569:1,474,665...1,480,568 		JBrowse link
G Osr1 odd-skipped related transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936493:11,888,024...11,895,058
Ensembl chrNW_004936493:11,888,024...11,895,058 		JBrowse link
G Osr2 odd-skipped related transciption factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936470:44,024,497...44,032,429
Ensembl chrNW_004936470:44,024,439...44,032,429 		JBrowse link
G Slc2a10 solute carrier family 2 member 10 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:18565096) ARUK-UCL
Ensembl		 PMID:18565096 GO_REF:0000107 NCBI chrNW_004936514:6,490,728...6,504,152
Ensembl chrNW_004936514:6,493,512...6,497,063 		JBrowse link
embryonic skeletal joint morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Axin1 axin 1 acts_upstream_of_or_within ISO MGI MGI:48782 NCBI chrNW_004936501:599,963...633,837
Ensembl chrNW_004936501:599,919...633,873 		JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1270933|PMID:9664686) MGI
Ensembl		 PMID:9664686 GO_REF:0000107 MGI:1270933 NCBI chrNW_004936697:1,054,237...1,061,468
Ensembl chrNW_004936697:1,056,636...1,061,468 		JBrowse link
G Bmp7 bone morphogenetic protein 7 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1270933|PMID:9664686) MGI
Ensembl		 PMID:9664686 GO_REF:0000107 MGI:1270933 NCBI chrNW_004936530:71,965...143,940
Ensembl chrNW_004936530:71,920...143,940 		JBrowse link
G Col2a1 collagen type II alpha 1 chain involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936512:5,861,933...5,894,898
Ensembl chrNW_004936512:5,861,933...5,892,853 		JBrowse link
G Hoxa11 homeobox A11 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:4867119|PMID:20978074) MGI
Ensembl		 PMID:20978074 GO_REF:0000107 MGI:4867119 NCBI chrNW_004936478:3,809,288...3,813,014
Ensembl chrNW_004936478:3,809,288...3,813,014 		JBrowse link
G Hoxc11 homeobox C11 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:4867119|PMID:20978074) MGI
Ensembl		 PMID:20978074 GO_REF:0000107 MGI:4867119 NCBI chrNW_004936512:11,194,876...11,197,316
Ensembl chrNW_004936512:11,194,876...11,197,316 		JBrowse link
G Hyal1 hyaluronidase 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3836537|PMID:18772348) MGI
Ensembl		 PMID:18772348 GO_REF:0000107 MGI:3836537 NCBI chrNW_004936529:1,838,212...1,842,399
Ensembl chrNW_004936529:1,838,676...1,841,188 		JBrowse link
G Nog noggin involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:6,262,651...6,264,069
Ensembl chrNW_004936490:6,262,785...6,263,483 		JBrowse link
G Osr1 odd-skipped related transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936493:11,888,024...11,895,058
Ensembl chrNW_004936493:11,888,024...11,895,058 		JBrowse link
G Osr2 odd-skipped related transciption factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936470:44,024,497...44,032,429
Ensembl chrNW_004936470:44,024,439...44,032,429 		JBrowse link
G Shox2 short stature homeobox 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3805084|PMID:18514492) MGI
Ensembl		 PMID:18514492 GO_REF:0000107 MGI:3805084 NCBI chrNW_004936519:4,810,777...4,818,733
Ensembl chrNW_004936519:4,809,687...4,818,792 		JBrowse link
embryonic skeletal limb joint morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnb1 catenin beta 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936473:29,999,542...30,034,610
Ensembl chrNW_004936473:29,999,562...30,038,293 		JBrowse link
G Osr1 odd-skipped related transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936493:11,888,024...11,895,058
Ensembl chrNW_004936493:11,888,024...11,895,058 		JBrowse link
G Osr2 odd-skipped related transciption factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936470:44,024,497...44,032,429
Ensembl chrNW_004936470:44,024,439...44,032,429 		JBrowse link
embryonic skeletal system morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alx1 ALX homeobox 1 acts_upstream_of_or_within ISO (MGI:1314705|PMID:9847249), (MGI:3604843|PMID:15728667) MGI PMID:9847249 PMID:15728667 MGI:1314705 MGI:3604843 NCBI chrNW_004936507:2,775,752...2,797,065
Ensembl chrNW_004936507:2,775,752...2,797,062 		JBrowse link
G Alx3 ALX homeobox 3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:2151109|PMID:11641221), (MGI:3604843|PMID:15728667) MGI
Ensembl		 PMID:11641221 PMID:15728667 GO_REF:0000107 MGI:2151109 MGI:3604843 NCBI chrNW_004936704:1,519,932...1,530,470
Ensembl chrNW_004936704:1,520,639...1,530,470 		JBrowse link
G Alx4 ALX homeobox 4 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3604843|PMID:15728667)
(MGI:1314705|PMID:9847249)
(MGI:2151109|PMID:11641221)		 MGI
Ensembl		 PMID:9847249 PMID:11641221 PMID:15728667 GO_REF:0000107 MGI:1314705 MGI:2151109 MGI:3604843 NCBI chrNW_004936562:4,316,550...4,326,022
Ensembl chrNW_004936562:4,314,870...4,326,000 		JBrowse link
G Asxl2 ASXL transcriptional regulator 2 acts_upstream_of_or_within ISO (MGI:3840399|PMID:19270745) MGI PMID:19270745 MGI:3840399 NCBI chrNW_004936493:6,463,771...6,602,244
Ensembl chrNW_004936493:6,463,744...6,594,252 		JBrowse link
G Bmi1 BMI1 proto-oncogene, polycomb ring finger acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1932296|PMID:11290297) MGI
Ensembl		 PMID:11290297 GO_REF:0000107 MGI:1932296 NCBI chrNW_004936520:5,707,542...5,716,966
Ensembl chrNW_004936520:5,707,778...5,717,024 		JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3640733|PMID:16712836) MGI
Ensembl		 PMID:16712836 GO_REF:0000107 MGI:3640733 NCBI chrNW_004936697:1,054,237...1,061,468
Ensembl chrNW_004936697:1,056,636...1,061,468 		JBrowse link
G Chst11 carbohydrate sulfotransferase 11 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3767479|PMID:16079159) MGI
Ensembl		 PMID:16079159 GO_REF:0000107 MGI:3767479 NCBI chrNW_004936492:9,886,269...10,092,725
Ensembl chrNW_004936492:9,886,254...10,092,221 		JBrowse link
G Col11a1 collagen type XI alpha 1 chain acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:53676|PMID:4100752) MGI
Ensembl		 PMID:4100752 GO_REF:0000107 MGI:53676 NCBI chrNW_004936730:466,912...680,823
Ensembl chrNW_004936730:468,039...680,753 		JBrowse link
G Dlg1 discs large MAGUK scaffold protein 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1930428|PMID:11238884) MGI
Ensembl		 PMID:11238884 GO_REF:0000107 MGI:1930428 NCBI chrNW_004936833:551,989...843,064
Ensembl chrNW_004936833:551,799...844,121 		JBrowse link
G Dscaml1 DS cell adhesion molecule like 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936542:2,619,910...2,939,578
Ensembl chrNW_004936542:2,620,469...2,939,578 		JBrowse link
G Dync2i1 dynein 2 intermediate chain 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936856:724,863...792,490
Ensembl chrNW_004936856:725,076...792,725 		JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1344210|PMID:10471511) MGI
Ensembl		 PMID:10471511 GO_REF:0000107 MGI:1344210 NCBI chrNW_004936648:395,526...546,705
Ensembl chrNW_004936648:395,524...546,729 		JBrowse link
G Flvcr1 FLVCR heme transporter 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:5471193|PMID:23187127) MGI
Ensembl		 PMID:23187127 GO_REF:0000107 MGI:5471193 NCBI chrNW_004936557:693,445...727,166
Ensembl chrNW_004936557:692,489...726,965 		JBrowse link
G Foxc2 forkhead box C2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1339313|PMID:9409679) MGI
Ensembl		 PMID:9409679 GO_REF:0000107 MGI:1339313 NCBI chrNW_004936641:2,236,224...2,238,501
Ensembl chrNW_004936641:2,236,873...2,238,375 		JBrowse link
G Fuz fuzzy planar cell polarity protein involved_in ISO (MGI:4438317|PMID:19767740), (MGI:5296432|PMID:21935430), (MGI:5498583|PMID:23806618) UniProt PMID:19767740 PMID:21935430 PMID:23806618 MGI:4438317 MGI:5296432 MGI:5498583 NCBI chrNW_004936664:3,596,764...3,601,676
Ensembl chrNW_004936664:3,596,952...3,601,342 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3604843|PMID:15728667) MGI
Ensembl		 PMID:15728667 GO_REF:0000107 MGI:3604843 NCBI chrNW_004936478:17,129,922...17,403,630
Ensembl chrNW_004936478:17,126,911...17,403,011 		JBrowse link
G Gsc goosecoid homeobox acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:76955|PMID:7555718)
(MGI:76246|PMID:7555726)		 MGI
Ensembl		 PMID:7555718 PMID:7555726 GO_REF:0000107 MGI:76246 MGI:76955 NCBI chrNW_004936846:286,429...288,405
Ensembl chrNW_004936846:286,420...288,405 		JBrowse link
G Hoxa2 homeobox A2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3525808|PMID:15634706) MGI
Ensembl		 PMID:15634706 GO_REF:0000107 MGI:3525808 NCBI chrNW_004936478:3,729,079...3,731,353
Ensembl chrNW_004936478:3,729,107...3,730,870 		JBrowse link
G Hoxa3 homeobox A3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1195045|PMID:9441667) MGI
Ensembl		 PMID:9441667 GO_REF:0000107 MGI:1195045 NCBI chrNW_004936478:3,735,509...3,767,899
Ensembl chrNW_004936478:3,735,505...3,767,899 		JBrowse link
G Hoxa4 homeobox A4 acts_upstream_of_or_within ISO (MGI:67413|PMID:7918106)
(MGI:74948|PMID:7628700)		 MGI PMID:7628700 PMID:7918106 MGI:67413 MGI:74948 NCBI chrNW_004936478:3,756,289...3,758,020 JBrowse link
G Hoxa5 homeobox A5 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1203259|PMID:9603431), (MGI:63693|PMID:7901120)
(MGI:3723390|PMID:17417799)		 MGI
Ensembl		 PMID:7901120 PMID:9603431 PMID:17417799 GO_REF:0000107 MGI:1203259 MGI:3723390 MGI:63693 NCBI chrNW_004936478:3,768,757...3,771,850
Ensembl chrNW_004936478:3,769,258...3,771,840 		JBrowse link
G Hoxa7 homeobox A7 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1313067|PMID:9784603) MGI
Ensembl		 PMID:9784603 GO_REF:0000107 MGI:1313067 NCBI chrNW_004936478:3,782,476...3,784,361
Ensembl chrNW_004936478:3,782,482...3,784,361 		JBrowse link
G Hoxb1 homeobox B1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1859107|PMID:10885747) MGI
Ensembl		 PMID:10885747 GO_REF:0000107 MGI:1859107 NCBI chrNW_004936490:12,853,983...12,855,428
Ensembl chrNW_004936490:12,853,983...12,855,428 		JBrowse link
G Hoxb2 homeobox B2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1859107|PMID:10885747) MGI
Ensembl		 PMID:10885747 GO_REF:0000107 MGI:1859107 NCBI chrNW_004936490:12,841,286...12,843,782
Ensembl chrNW_004936490:12,841,695...12,843,494 		JBrowse link
G Hoxb3 homeobox B3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1195045|PMID:9441667)
(MGI:1859107|PMID:10885747)		 MGI
Ensembl		 PMID:9441667 PMID:10885747 GO_REF:0000107 MGI:1195045 MGI:1859107 NCBI chrNW_004936490:12,834,240...12,836,812
Ensembl chrNW_004936490:12,834,240...12,836,398 		JBrowse link
G Hoxb4 homeobox B4 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:74948|PMID:7628700)
(MGI:1859107|PMID:10885747)		 MGI
Ensembl		 PMID:7628700 PMID:10885747 GO_REF:0000107 MGI:1859107 MGI:74948 NCBI chrNW_004936490:12,808,679...12,811,688
Ensembl chrNW_004936490:12,808,679...12,811,688 		JBrowse link
G Hoxb5 homeobox B5 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:70296|PMID:7828847)
(MGI:1859107|PMID:10885747)		 MGI
Ensembl		 PMID:7828847 PMID:10885747 GO_REF:0000107 MGI:1859107 MGI:70296 NCBI chrNW_004936490:12,793,485...12,796,219
Ensembl chrNW_004936490:12,793,485...12,796,219 		JBrowse link
G Hoxb6 homeobox B6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:1859107|PMID:10885747) Ensembl
MGI		 PMID:10885747 GO_REF:0000107 MGI:1859107 NCBI chrNW_004936490:12,782,864...12,791,743
Ensembl chrNW_004936490:12,789,173...12,791,759 		JBrowse link
G Hoxb7 homeobox B7 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1313067|PMID:9784603)
(MGI:1859107|PMID:10885747)		 MGI
Ensembl		 PMID:9784603 PMID:10885747 GO_REF:0000107 MGI:1313067 MGI:1859107 NCBI chrNW_004936490:12,777,005...12,780,515
Ensembl chrNW_004936490:12,777,020...12,780,522 		JBrowse link
G Hoxb8 homeobox B8 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1349283|PMID:10559485)
(MGI:1859107|PMID:10885747)		 MGI
Ensembl		 PMID:10559485 PMID:10885747 GO_REF:0000107 MGI:1349283 MGI:1859107 NCBI chrNW_004936490:12,773,295...12,774,832
Ensembl chrNW_004936490:12,773,295...12,774,852 		JBrowse link
G Hoxc9 homeobox C9 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:73980|PMID:7547473) MGI
Ensembl		 PMID:7547473 GO_REF:0000107 MGI:73980 NCBI chrNW_004936512:11,222,120...11,225,455
Ensembl chrNW_004936512:11,217,547...11,225,455 		JBrowse link
G Hoxd10 homeobox D10 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1350864|PMID:10642795) MGI
Ensembl		 PMID:10642795 GO_REF:0000107 MGI:1350864 NCBI chrNW_004936509:5,603,661...5,606,850
Ensembl chrNW_004936509:5,603,642...5,606,850 		JBrowse link
G Hoxd3 homeobox D3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:63793|PMID:7910549), (MGI:67616|PMID:7913519)
(MGI:67616|PMID:7913519)		 MGI
Ensembl		 PMID:7910549 PMID:7913519 GO_REF:0000107 MGI:63793 MGI:67616 NCBI chrNW_004936509:5,654,737...5,659,937
Ensembl chrNW_004936509:5,651,190...5,659,937 		JBrowse link
G Hoxd4 homeobox D4 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:72992|PMID:7750651)
(MGI:74948|PMID:7628700)		 MGI
Ensembl		 PMID:7628700 PMID:7750651 GO_REF:0000107 MGI:72992 MGI:74948 NCBI chrNW_004936509:5,637,600...5,640,335
Ensembl chrNW_004936509:5,637,600...5,640,917 		JBrowse link
G Hoxd9 homeobox D9 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1350864|PMID:10642795) MGI
Ensembl		 PMID:10642795 GO_REF:0000107 MGI:1350864 NCBI chrNW_004936509:5,609,744...5,611,943
Ensembl chrNW_004936509:5,609,744...5,611,943 		JBrowse link
G Hspg2 heparan sulfate proteoglycan 2 acts_upstream_of_or_within ISO (MGI:1349497|PMID:10579729) MGI PMID:10579729 MGI:1349497 NCBI chrNW_004936474:7,407,622...7,478,950
Ensembl chrNW_004936474:7,408,518...7,467,851 		JBrowse link
G Mdfi MyoD family inhibitor acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1312999|PMID:9799236) MGI
Ensembl		 PMID:9799236 GO_REF:0000107 MGI:1312999 NCBI chrNW_004936476:18,262,662...18,276,159
Ensembl chrNW_004936476:18,263,194...18,275,935 		JBrowse link
G Mef2c myocyte enhancer factor 2C acts_upstream_of_or_within ISO (MGI:3714538|PMID:17420000) MGI PMID:17420000 MGI:3714538 NCBI chrNW_004936469:7,060,480...7,225,497
Ensembl chrNW_004936469:7,060,480...7,204,661 		JBrowse link
G Megf8 multiple EGF like domains 8 involved_in IEA
ISS		 Ensembl
CAFA		 GO_REF:0000024 GO_REF:0000107 NCBI chrNW_004936706:157,167...198,071
Ensembl chrNW_004936706:157,019...197,500 		JBrowse link
G Men1 menin 1 acts_upstream_of_or_within ISO (MGI:3763871|PMID:17927973) MGI PMID:17927973 MGI:3763871 NCBI chrNW_004936599:4,504,489...4,510,085
Ensembl chrNW_004936599:4,504,397...4,510,555 		JBrowse link
G Mycn MYCN proto-oncogene, bHLH transcription factor acts_upstream_of_or_within ISO (MGI:3790402|PMID:17360777) MGI PMID:17360777 MGI:3790402 NCBI chrNW_004936493:14,618,176...14,624,201 JBrowse link
G Myf5 myogenic factor 5 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1861090|PMID:10929709) MGI
Ensembl		 PMID:10929709 GO_REF:0000107 MGI:1861090 NCBI chrNW_004936698:1,609,227...1,611,283
Ensembl chrNW_004936698:1,609,227...1,611,283 		JBrowse link
G Osr2 odd-skipped related transciption factor 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3513962|PMID:15175245) MGI
Ensembl		 PMID:15175245 GO_REF:0000107 MGI:3513962 NCBI chrNW_004936470:44,024,497...44,032,429
Ensembl chrNW_004936470:44,024,439...44,032,429 		JBrowse link
G Pcgf2 polycomb group ring finger 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1932296|PMID:11290297) MGI
Ensembl		 PMID:11290297 GO_REF:0000107 MGI:1932296 NCBI chrNW_004936490:14,139,125...14,150,377
Ensembl chrNW_004936490:14,138,980...14,150,756 		JBrowse link
G Prrx1 paired related homeobox 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1306737|PMID:9729491), (MGI:1321048|PMID:9876178), (MGI:2149056|PMID:11532916)
(MGI:73363|PMID:7758948)		 MGI
Ensembl		 PMID:7758948 PMID:9729491 PMID:9876178 PMID:11532916 GO_REF:0000107 MGI:1306737 MGI:1321048 MGI:2149056 MGI:73363 NCBI chrNW_004936481:16,208,243...16,272,836
Ensembl chrNW_004936481:16,205,240...16,272,850 		JBrowse link
G Satb2 SATB homeobox 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3695004|PMID:16960803)
(MGI:3692344|PMID:16751105)		 MGI
Ensembl		 PMID:16751105 PMID:16960803 GO_REF:0000107 MGI:3692344 MGI:3695004 NCBI chrNW_004936506:34,968...206,432
Ensembl chrNW_004936506:34,962...206,490 		JBrowse link
G Six1 SIX homeobox 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3578604|PMID:15788460) MGI
Ensembl		 PMID:15788460 GO_REF:0000107 MGI:3578604 NCBI chrNW_004936495:4,839,496...4,842,906
Ensembl chrNW_004936495:4,838,051...4,842,994 		JBrowse link
G Six2 SIX homeobox 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3525808|PMID:15634706) MGI
Ensembl		 PMID:15634706 GO_REF:0000107 MGI:3525808 NCBI chrNW_004936508:7,047,563...7,051,129
Ensembl chrNW_004936508:7,047,304...7,051,732 		JBrowse link
G Six4 SIX homeobox 4 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3578604|PMID:15788460) MGI
Ensembl		 PMID:15788460 GO_REF:0000107 MGI:3578604 NCBI chrNW_004936495:4,887,718...4,900,198
Ensembl chrNW_004936495:4,887,718...4,900,198 		JBrowse link
G Sox11 SRY-box transcription factor 11 involved_in ISO (MGI:3052265|PMID:15254231) UniProt PMID:15254231 MGI:3052265 NCBI chrNW_004937107:203,120...207,185 JBrowse link
G Tbx15 T-box transcription factor 15 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3604843|PMID:15728667) MGI
Ensembl		 PMID:15728667 GO_REF:0000107 MGI:3604843 NCBI chrNW_004936627:3,745,399...3,852,861
Ensembl chrNW_004936627:3,745,287...3,853,309 		JBrowse link
G Twist1 twist family bHLH transcription factor 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3042355|PMID:15030764) MGI
Ensembl		 PMID:15030764 GO_REF:0000107 MGI:3042355 NCBI chrNW_004936546:5,331,220...5,332,669
Ensembl chrNW_004936546:5,331,863...5,332,555 		JBrowse link
G Wnt9a Wnt family member 9A acts_upstream_of_or_within ISO (MGI:3701031|PMID:16818445) MGI PMID:16818445 MGI:3701031 NCBI chrNW_004936864:216,381...245,885
Ensembl chrNW_004936864:239,651...244,312 		JBrowse link
G Zeb1 zinc finger E-box binding homeobox 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1195626|PMID:9389660) MGI
Ensembl		 PMID:9389660 GO_REF:0000107 MGI:1195626 NCBI chrNW_004936574:17,643...175,762
Ensembl chrNW_004936574:17,684...178,293 		JBrowse link
embryonic viscerocranium morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chst11 carbohydrate sulfotransferase 11 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3767479|PMID:16079159) MGI
Ensembl		 PMID:16079159 GO_REF:0000107 MGI:3767479 NCBI chrNW_004936492:9,886,269...10,092,725
Ensembl chrNW_004936492:9,886,254...10,092,221 		JBrowse link
G Foxc2 forkhead box C2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1339313|PMID:9409679) MGI
Ensembl		 PMID:9409679 GO_REF:0000107 MGI:1339313 NCBI chrNW_004936641:2,236,224...2,238,501
Ensembl chrNW_004936641:2,236,873...2,238,375 		JBrowse link
G Hoxa2 homeobox A2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3608156|PMID:16221728) MGI
Ensembl		 PMID:16221728 GO_REF:0000107 MGI:3608156 NCBI chrNW_004936478:3,729,079...3,731,353
Ensembl chrNW_004936478:3,729,107...3,730,870 		JBrowse link
G Lhx1 LIM homeobox 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936490:1,324,378...1,332,177
Ensembl chrNW_004936490:1,324,370...1,331,505 		JBrowse link
G Mef2c myocyte enhancer factor 2C acts_upstream_of_or_within ISO (MGI:3714538|PMID:17420000) MGI PMID:17420000 MGI:3714538 NCBI chrNW_004936469:7,060,480...7,225,497
Ensembl chrNW_004936469:7,060,480...7,204,661 		JBrowse link
G Mthfd1l methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936489:3,877,423...4,060,129
Ensembl chrNW_004936489:3,876,680...4,051,933 		JBrowse link
G Ndst1 N-deacetylase and N-sulfotransferase 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3588476|PMID:16020517) MGI
Ensembl		 PMID:16020517 GO_REF:0000107 MGI:3588476 NCBI chrNW_004936504:4,413,549...4,495,933
Ensembl chrNW_004936504:4,413,549...4,454,109 		JBrowse link
G Nipbl NIPBL cohesin loading factor acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:4367301|PMID:19763162) MGI
Ensembl		 PMID:19763162 GO_REF:0000107 MGI:4367301 NCBI chrNW_004936518:4,870,686...5,041,099
Ensembl chrNW_004936518:4,869,546...4,969,450 		JBrowse link
G Rdh10 retinol dehydrogenase 10 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3709664|PMID:17473173) MGI
Ensembl		 PMID:17473173 GO_REF:0000107 MGI:3709664 NCBI chrNW_004936648:2,060,131...2,088,021
Ensembl chrNW_004936648:2,060,125...2,088,833 		JBrowse link
G Tbx1 T-box transcription factor 1 involved_in ISO (PMID:14585638) UniProt PMID:14585638 NCBI chrNW_004936619:3,662,567...3,670,470
Ensembl chrNW_004936619:3,664,468...3,670,525 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15036
    multicellular organismal process 7329
      multicellular organism development 4618
        system development 3985
          skeletal system development 552
            embryonic skeletal system development 140
              embryonic skeletal joint development + 15
              embryonic skeletal system morphogenesis + 100
Path 2
Term Annotations click to browse term
  biological_process 15036
    developmental process 6015
      anatomical structure development 5628
        multicellular organism development 4618
          embryo development 1254
            embryo development ending in birth or egg hatching 833
              chordate embryonic development 818
                embryonic skeletal system development 140
                  embryonic skeletal joint development + 15
                  embryonic skeletal system morphogenesis + 100
paths to the root