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ONTOLOGY REPORT - ANNOTATIONS

Term:embryonic skeletal system development
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Accession:GO:0048706 term browser browse the term
Definition:The process, occurring during the embryonic phase, whose specific outcome is the progression of the skeleton over time, from its formation to the mature structure.
Synonyms:exact_synonym: embryonic skeletal development


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embryonic skeletal system development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACVR2A activin A receptor type 2A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:71660|PMID:7885474) Ensembl
Ensembl
MGI		 PMID:7885474 GO_REF:0000107 MGI:71660 NCBI chr 2:147,844,517...147,930,822
Ensembl chr 2:147,844,517...147,930,826 		JBrowse link
G BMI1 BMI1 proto-oncogene, polycomb ring finger acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1932296|PMID:11290297) MGI
Ensembl		 PMID:11290297 GO_REF:0000107 MGI:1932296 NCBI chr10:22,321,099...22,331,484
Ensembl chr10:22,321,099...22,331,484 		JBrowse link
G BMP4 bone morphogenetic protein 4 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3640733|PMID:16712836) MGI
Ensembl		 PMID:16712836 GO_REF:0000107 MGI:3640733 NCBI chr14:53,949,736...53,956,891
Ensembl chr14:53,949,736...53,958,761 		JBrowse link
G CDK20 cyclin dependent kinase 20 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:5912686|PMID:28817564) MGI
Ensembl
Ensembl		 PMID:28817564 GO_REF:0000107 MGI:5912686 NCBI chr 9:87,966,441...87,974,533
Ensembl chr 9:87,966,441...87,974,753 		JBrowse link
G COL1A1 collagen type I alpha 1 chain involved_in IMP (PMID:18553566) UniProt
UniProt		 PMID:18553566 NCBI chr17:50,184,101...50,201,631
Ensembl chr17:50,184,101...50,201,632 		JBrowse link
G COMMD3-BMI1 COMMD3-BMI1 readthrough involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:22,316,388...22,331,484
Ensembl chr10:22,316,388...22,329,542 		JBrowse link
G DEAF1 DEAF1 transcription factor involved_in ISS UniProt
UniProt		 GO_REF:0000024 NCBI chr11:644,220...707,083
Ensembl chr11:644,233...707,118 		JBrowse link
G DLK1 delta like non-canonical Notch ligand 1 acts_upstream_of_or_within ISO (MGI:3838429|PMID:19247431) MGI PMID:19247431 MGI:3838429 NCBI chr14:100,726,892...100,738,224
Ensembl chr14:100,725,705...100,738,224 		JBrowse link
G DLX1 distal-less homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:87771|PMID:9187081) Ensembl
Ensembl
MGI		 PMID:9187081 GO_REF:0000107 MGI:87771 NCBI chr 2:172,085,507...172,089,674
Ensembl chr 2:172,084,740...172,089,677 		JBrowse link
G DLX2 distal-less homeobox 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:87771|PMID:9187081) MGI
Ensembl		 PMID:9187081 GO_REF:0000107 MGI:87771 NCBI chr 2:172,099,438...172,102,900
Ensembl chr 2:172,099,438...172,102,900 		JBrowse link
G DMRT2 doublesex and mab-3 related transcription factor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:3613100|PMID:16387292) Ensembl
Ensembl
MGI		 PMID:16387292 GO_REF:0000107 MGI:3613100 NCBI chr 9:1,050,357...1,057,552
Ensembl chr 9:1,049,858...1,057,552 		JBrowse link
G EDNRA endothelin receptor type A involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr 4:147,481,097...147,544,954
Ensembl chr 4:147,480,917...147,544,954 		JBrowse link
G FGF9 fibroblast growth factor 9 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3716021|PMID:17544391) MGI
Ensembl
Ensembl		 PMID:17544391 GO_REF:0000107 MGI:3716021 NCBI chr13:21,671,073...21,704,498
Ensembl chr13:21,671,073...21,704,498 		JBrowse link
G GAS1 growth arrest specific 1 acts_upstream_of_or_within ISO (MGI:3710451|PMID:17504941) MGI PMID:17504941 MGI:3710451 NCBI chr 9:86,944,362...86,947,506
Ensembl chr 9:86,944,362...86,947,506 		JBrowse link
G HAND2 heart and neural crest derivatives expressed 2 involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr 4:173,526,091...173,530,229
Ensembl chr 4:173,524,969...173,530,229 		JBrowse link
G HOXA2 homeobox A2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:27,100,354...27,102,683
Ensembl chr 7:27,100,354...27,102,686 		JBrowse link
G HOXA3 homeobox A3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:67616|PMID:7913519) MGI
Ensembl		 PMID:7913519 GO_REF:0000107 MGI:67616 NCBI chr 7:27,107,010...27,152,583
Ensembl chr 7:27,106,184...27,152,583 		JBrowse link
G HOXA5 homeobox A5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:3720535|PMID:17626057) Ensembl
MGI		 PMID:17626057 GO_REF:0000107 MGI:3720535 NCBI chr 7:27,141,052...27,143,681
Ensembl chr 7:27,141,052...27,143,681 		JBrowse link
G HOXA6 homeobox A6 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3720535|PMID:17626057) MGI
Ensembl		 PMID:17626057 GO_REF:0000107 MGI:3720535 NCBI chr 7:27,145,396...27,147,774
Ensembl chr 7:27,145,396...27,150,603 		JBrowse link
G HOXA9 homeobox A9 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:78984|PMID:8625797)
(MGI:3720535|PMID:17626057)
(MGI:85243|PMID:9013929)		 MGI
Ensembl		 PMID:8625797 PMID:9013929 PMID:17626057 GO_REF:0000107 MGI:3720535 MGI:78984 MGI:85243 NCBI chr 7:27,162,438...27,165,537
Ensembl chr 7:27,162,438...27,175,180 		JBrowse link
G HOXB5 homeobox B5 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3720535|PMID:17626057) MGI
Ensembl		 PMID:17626057 GO_REF:0000107 MGI:3720535 NCBI chr17:48,591,257...48,593,779
Ensembl chr17:48,591,257...48,593,779 		JBrowse link
G HOXB6 homeobox B6 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:70296|PMID:7828847)
(MGI:3720535|PMID:17626057)		 MGI
Ensembl		 PMID:7828847 PMID:17626057 GO_REF:0000107 MGI:3720535 MGI:70296 NCBI chr17:48,595,751...48,604,986
Ensembl chr17:48,595,751...48,604,992 		JBrowse link
G HOXB9 homeobox B9 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:85243|PMID:9013929)
(MGI:1859107|PMID:10885747)
(MGI:3720535|PMID:17626057)		 MGI
Ensembl		 PMID:9013929 PMID:10885747 PMID:17626057 GO_REF:0000107 MGI:1859107 MGI:3720535 MGI:85243 NCBI chr17:48,621,156...48,626,358
Ensembl chr17:48,621,156...48,626,358 		JBrowse link
G HOXC5 homeobox C5 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3720535|PMID:17626057) MGI
Ensembl
Ensembl		 PMID:17626057 GO_REF:0000107 MGI:3720535 NCBI chr12:54,016,888...54,035,361
Ensembl chr12:54,033,050...54,035,361 		JBrowse link
G HOXC6 homeobox C6 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3720535|PMID:17626057) MGI
Ensembl
Ensembl		 PMID:17626057 GO_REF:0000107 MGI:3720535 NCBI chr12:54,016,888...54,030,823
Ensembl chr12:53,990,624...54,030,823 		JBrowse link
G HOXC9 homeobox C9 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3720535|PMID:17626057) MGI
Ensembl		 PMID:17626057 GO_REF:0000107 MGI:3720535 NCBI chr12:54,000,161...54,003,337
Ensembl chr12:53,994,895...54,003,337 		JBrowse link
G HOXD1 homeobox D1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:2137767|PMID:11511348) Ensembl
Ensembl
MGI		 PMID:11511348 GO_REF:0000107 MGI:2137767 NCBI chr 2:176,188,668...176,190,907
Ensembl chr 2:176,188,668...176,190,907 		JBrowse link
G HOXD9 homeobox D9 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:78984|PMID:8625797)
(MGI:3720535|PMID:17626057)		 MGI
Ensembl		 PMID:8625797 PMID:17626057 GO_REF:0000107 MGI:3720535 MGI:78984 NCBI chr 2:176,122,719...176,124,937
Ensembl chr 2:176,122,719...176,124,937 		JBrowse link
G HSD17B7 hydroxysteroid 17-beta dehydrogenase 7 acts_upstream_of_or_within ISO (MGI:5050793|PMID:21515572) MGI PMID:21515572 MGI:5050793 NCBI chr 1:162,790,702...162,812,823
Ensembl chr 1:162,790,702...162,812,823 		JBrowse link
G KIAA1217 KIAA1217 involved_in IEA
ISS		 InterPro
UniProt
UniProt		 GO_REF:0000002 GO_REF:0000024 NCBI chr10:23,694,727...24,547,843
Ensembl chr10:23,694,746...24,547,848 		JBrowse link
G MBTD1 mbt domain containing 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:4939865|PMID:21252303) Ensembl
Ensembl
MGI		 PMID:21252303 GO_REF:0000107 MGI:4939865 NCBI chr17:51,177,425...51,260,958
Ensembl chr17:51,177,425...51,260,163 		JBrowse link
G MKS1 MKS transition zone complex subunit 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:4868517|PMID:21045211) MGI
Ensembl
Ensembl		 PMID:21045211 GO_REF:0000107 MGI:4868517 NCBI chr17:58,205,441...58,219,255
Ensembl chr17:58,205,441...58,219,605 		JBrowse link
G NKX3-2 NK3 homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:1347483|PMID:10572046)
(MGI:1343724|PMID:10449756)		 Ensembl
Ensembl
MGI		 PMID:10449756 PMID:10572046 GO_REF:0000107 MGI:1343724 MGI:1347483 NCBI chr 4:13,540,830...13,547,744
Ensembl chr 4:13,540,830...13,544,508 		JBrowse link
G NOG noggin involved_in IMP (PMID:10080184) BHF-UCL
BHF-UCL		 PMID:10080184 NCBI chr17:56,593,699...56,595,611
Ensembl chr17:56,593,699...56,595,611 		JBrowse link
G PAX7 paired box 7 acts_upstream_of_or_within ISO (MGI:79520|PMID:8631261) MGI PMID:8631261 MGI:79520 NCBI chr 1:18,630,846...18,748,866
Ensembl chr 1:18,630,846...18,748,866 		JBrowse link
G PBX1 PBX homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:2151355|PMID:11566859) Ensembl
Ensembl
MGI		 PMID:11566859 GO_REF:0000107 MGI:2151355 NCBI chr 1:164,559,184...164,886,047
Ensembl chr 1:164,555,584...164,899,296 		JBrowse link
G PCGF2 polycomb group ring finger 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1932296|PMID:11290297) MGI
Ensembl		 PMID:11290297 GO_REF:0000107 MGI:1932296 NCBI chr17:38,733,898...38,749,792
Ensembl chr17:38,733,898...38,749,817 		JBrowse link
G PCSK5 proprotein convertase subtilisin/kexin type 5 involved_in IEA
ISS
IMP		 (PMID:8940009)
(PMID:18519639)		 Ensembl
Ensembl
BHF-UCL
BHF-UCL		 PMID:8940009 PMID:18519639 GO_REF:0000107 NCBI chr 9:75,889,809...76,362,975
Ensembl chr 9:75,890,644...76,362,975 		JBrowse link
G RBP4 retinol binding protein 4 involved_in ISS BHF-UCL
BHF-UCL		 GO_REF:0000024 NCBI chr10:93,591,694...93,601,744
Ensembl chr10:93,591,687...93,601,744 		JBrowse link
G SCX scleraxis bHLH transcription factor involved_in IEA Ensembl
Ensembl		 GO_REF:0000107 NCBI chr 8:144,266,453...144,268,481
Ensembl chr 8:144,266,453...144,268,481 		JBrowse link
G SHH sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:3710451|PMID:17504941) Ensembl
Ensembl
MGI		 PMID:17504941 GO_REF:0000107 MGI:3710451 NCBI chr 7:155,799,980...155,812,463
Ensembl chr 7:155,799,980...155,812,463 		JBrowse link
G SLC35D1 solute carrier family 35 member D1 acts_upstream_of_or_within ISO (MGI:3771453|PMID:17952091) MGI PMID:17952091 MGI:3771453 NCBI chr 1:66,972,976...67,054,148
Ensembl chr 1:66,999,350...67,054,148 		JBrowse link
G SP1 Sp1 transcription factor acts_upstream_of_or_within ISO (MGI:3717030|PMID:17584888) MGI PMID:17584888 MGI:3717030 NCBI chr12:53,380,176...53,416,446
Ensembl chr12:53,380,176...53,416,446 		JBrowse link
G SP3 Sp3 transcription factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:3717030|PMID:17584888) Ensembl
Ensembl
MGI		 PMID:17584888 GO_REF:0000107 MGI:3717030 NCBI chr 2:173,900,775...173,965,702
Ensembl chr 2:173,880,850...173,965,373 		JBrowse link
G SULF1 sulfatase 1 involved_in ISS
IEA		 UniProt
UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000104 GO_REF:0000107 NCBI chr 8:69,466,781...69,660,912
Ensembl chr 8:69,466,624...69,660,915 		JBrowse link
G SULF2 sulfatase 2 involved_in ISS
IEA		 UniProt
Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr20:47,657,406...47,786,627
Ensembl chr20:47,656,197...47,786,616 		JBrowse link
G TAPT1 transmembrane anterior posterior transformation 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:3758514|PMID:17151244) Ensembl
Ensembl
MGI		 PMID:17151244 GO_REF:0000107 MGI:3758514 NCBI chr 4:16,160,505...16,227,390
Ensembl chr 4:16,160,505...16,227,410 		JBrowse link
G TBXT T-box transcription factor T involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:64493|PMID:8293872) Ensembl
Ensembl
MGI		 PMID:8293872 GO_REF:0000107 MGI:64493 NCBI chr 6:166,157,656...166,168,655
Ensembl chr 6:166,157,656...166,168,700 		JBrowse link
G UCMA upper zone of growth plate and cartilage matrix associated involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr10:13,221,766...13,234,374
Ensembl chr10:13,221,766...13,234,374 		JBrowse link
G WNT11 Wnt family member 11 involved_in IEP (PMID:9757009) UniProt
UniProt		 PMID:9757009 NCBI chr11:76,186,325...76,210,761
Ensembl chr11:76,186,325...76,210,736 		JBrowse link
G WNT5A Wnt family member 5A involved_in IMP (PMID:19918918) BHF-UCL
BHF-UCL		 PMID:19918918 NCBI chr 3:55,465,715...55,505,263
Ensembl chr 3:55,465,715...55,490,539 		JBrowse link
G XYLT1 xylosyltransferase 1 involved_in ISS UniProt
UniProt		 GO_REF:0000024 NCBI chr16:17,101,769...17,470,960
Ensembl chr16:17,101,769...17,470,960 		JBrowse link
embryonic cranial skeleton morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALX3 ALX homeobox 3 involved_in IEA InterPro GO_REF:0000002 NCBI chr 1:110,059,870...110,070,672
Ensembl chr 1:110,059,870...110,070,672 		JBrowse link
G BMP4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:1095762|PMID:9268572) Ensembl
Ensembl
MGI		 PMID:9268572 GO_REF:0000107 MGI:1095762 NCBI chr14:53,949,736...53,956,891
Ensembl chr14:53,949,736...53,958,761 		JBrowse link
G DLX2 distal-less homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:76977|PMID:7590232) Ensembl
Ensembl
MGI		 PMID:7590232 GO_REF:0000107 MGI:76977 NCBI chr 2:172,099,438...172,102,900
Ensembl chr 2:172,099,438...172,102,900 		JBrowse link
G EIF4A3 eukaryotic translation initiation factor 4A3 involved_in IMP (PMID:24360810) UniProt
UniProt		 PMID:24360810 NCBI chr17:80,134,369...80,147,128
Ensembl chr17:80,134,369...80,147,151 		JBrowse link
G FGFR2 fibroblast growth factor receptor 2 involved_in IMP (PMID:7874170), (PMID:7987400) BHF-UCL
BHF-UCL		 PMID:7874170 PMID:7987400 NCBI chr10:121,478,330...121,598,458
Ensembl chr10:121,478,332...121,598,458 		JBrowse link
G FOXC2 forkhead box C2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:86990|PMID:9106663) MGI
Ensembl		 PMID:9106663 GO_REF:0000107 MGI:86990 NCBI chr16:86,566,829...86,569,728
Ensembl chr16:86,566,829...86,569,728 		JBrowse link
G GAS1 growth arrest specific 1 acts_upstream_of_or_within ISO (MGI:3713422|PMID:17525797) MGI PMID:17525797 MGI:3713422 NCBI chr 9:86,944,362...86,947,506
Ensembl chr 9:86,944,362...86,947,506 		JBrowse link
G GNAS GNAS complex locus acts_upstream_of_or_within ISO (MGI:3619837|PMID:15797856) MGI PMID:15797856 MGI:3619837 NCBI chr20:58,839,748...58,911,192
Ensembl chr20:58,839,718...58,911,192 		JBrowse link
G GRHL2 grainyhead like transcription factor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:4943100|PMID:21377456) Ensembl
Ensembl
MGI		 PMID:21377456 GO_REF:0000107 MGI:4943100 NCBI chr 8:101,492,439...101,681,200
Ensembl chr 8:101,492,439...101,669,726 		JBrowse link
G IFT140 intraflagellar transport 140 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:5505384|PMID:23469164) Ensembl
Ensembl
MGI		 PMID:23469164 GO_REF:0000107 MGI:5505384 NCBI chr16:1,510,427...1,612,072
Ensembl chr16:1,510,427...1,612,072 		JBrowse link
G IRX5 iroquois homeobox 5 involved_in IMP (PMID:22581230) UniProt
UniProt		 PMID:22581230 NCBI chr16:54,930,865...54,934,485
Ensembl chr16:54,930,865...54,934,485 		JBrowse link
G MMP14 matrix metallopeptidase 14 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:3771253|PMID:18022611) Ensembl
Ensembl
MGI		 PMID:18022611 GO_REF:0000107 MGI:3771253 NCBI chr14:22,836,585...22,847,758
Ensembl chr14:22,836,560...22,849,041 		JBrowse link
G MMP16 matrix metallopeptidase 16 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:3771253|PMID:18022611) Ensembl
Ensembl
MGI		 PMID:18022611 GO_REF:0000107 MGI:3771253 NCBI chr 8:88,032,011...88,327,483
Ensembl chr 8:88,032,011...88,328,025 		JBrowse link
G NIPBL NIPBL cohesin loading factor acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:4367301|PMID:19763162) MGI
Ensembl		 PMID:19763162 GO_REF:0000107 MGI:4367301 NCBI chr 5:36,876,769...37,066,413
Ensembl chr 5:36,876,769...37,066,413 		JBrowse link
G NODAL nodal growth differentiation factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:2155575|PMID:11311163) Ensembl
Ensembl
MGI		 PMID:11311163 GO_REF:0000107 MGI:2155575 NCBI chr10:70,431,936...70,447,951
Ensembl chr10:70,431,936...70,447,951 		JBrowse link
G PAX5 paired box 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:5476374|PMID:23349049) Ensembl
Ensembl
MGI		 PMID:23349049 GO_REF:0000107 MGI:5476374 NCBI chr 9:36,833,269...37,034,268
Ensembl chr 9:36,833,269...37,034,268 		JBrowse link
G PDGFRA platelet derived growth factor receptor alpha involved_in ISS
IBA
IEA		 (PMID:21873635) UniProt
GO_Central
Ensembl
UniProt
GO_Central		 PMID:21873635 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:54,229,293...54,298,245
Ensembl chr 4:54,229,280...54,298,245 		JBrowse link
G PRRX1 paired related homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:1306737|PMID:9729491)
(MGI:73363|PMID:7758948)		 Ensembl
Ensembl
MGI		 PMID:7758948 PMID:9729491 GO_REF:0000107 MGI:1306737 MGI:73363 NCBI chr 1:170,662,768...170,739,421
Ensembl chr 1:170,662,728...170,739,421 		JBrowse link
G PRRX2 paired related homeobox 2 acts_upstream_of_or_within ISO (MGI:1306737|PMID:9729491) MGI PMID:9729491 MGI:1306737 NCBI chr 9:129,665,647...129,722,674
Ensembl chr 9:129,665,647...129,722,674 		JBrowse link
G RUNX2 RUNX family transcription factor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:3042355|PMID:15030764) Ensembl
Ensembl
MGI		 PMID:15030764 GO_REF:0000107 MGI:3042355 NCBI chr 6:45,328,330...45,551,082
Ensembl chr 6:45,328,157...45,664,349 		JBrowse link
G SETD2 SET domain containing 2, histone lysine methyltransferase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:4431136|PMID:20133625) Ensembl
Ensembl
MGI		 PMID:20133625 GO_REF:0000107 MGI:4431136 NCBI chr 3:47,016,436...47,164,840
Ensembl chr 3:47,016,428...47,164,113 		JBrowse link
G SIX1 SIX homeobox 1 involved_in
acts_upstream_of_or_within		 ISS
IEA
ISO		 (MGI:4822095|PMID:20515681) UniProt
UniProt
Ensembl
MGI		 PMID:20515681 GO_REF:0000024 GO_REF:0000107 MGI:4822095 NCBI chr14:60,643,421...60,649,477
Ensembl chr14:60,643,421...60,658,259 		JBrowse link
G SIX2 SIX homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:4822095|PMID:20515681) Ensembl
Ensembl
MGI		 PMID:20515681 GO_REF:0000107 MGI:4822095 NCBI chr 2:45,005,182...45,009,452
Ensembl chr 2:45,005,182...45,009,452 		JBrowse link
G SIX4 SIX homeobox 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:4822095|PMID:20515681) Ensembl
Ensembl
MGI		 PMID:20515681 GO_REF:0000107 MGI:4822095 NCBI chr14:60,709,539...60,724,351
Ensembl chr14:60,709,539...60,724,351 		JBrowse link
G SLC39A1 solute carrier family 39 member 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:3624433|PMID:16652366) Ensembl
Ensembl
MGI		 PMID:16652366 GO_REF:0000107 MGI:3624433 NCBI chr 1:153,959,110...153,968,184
Ensembl chr 1:153,959,099...153,968,184 		JBrowse link
G SLC39A3 solute carrier family 39 member 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:3624433|PMID:16652366) Ensembl
Ensembl
MGI		 PMID:16652366 GO_REF:0000107 MGI:3624433 NCBI chr19:2,732,524...2,740,076
Ensembl chr19:2,732,204...2,740,028 		JBrowse link
G SMAD2 SMAD family member 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:3618021|PMID:15183723) Ensembl
Ensembl
MGI		 PMID:15183723 GO_REF:0000107 MGI:3618021 NCBI chr18:47,808,957...47,930,872
Ensembl chr18:47,808,957...47,931,146 		JBrowse link
G SMAD3 SMAD family member 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:3618021|PMID:15183723) Ensembl
Ensembl
MGI		 PMID:15183723 GO_REF:0000107 MGI:3618021 NCBI chr15:67,065,602...67,195,169
Ensembl chr15:67,063,763...67,195,173 		JBrowse link
G TBX1 T-box transcription factor 1 involved_in
acts_upstream_of_or_within		 ISS
ISO		 (MGI:3050165|PMID:15190012) UniProt
UniProt
MGI		 PMID:15190012 GO_REF:0000024 MGI:3050165 NCBI chr22:19,756,703...19,783,593
Ensembl chr22:19,756,703...19,783,593 		JBrowse link
G TBX15 T-box transcription factor 15 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:3604843|PMID:15728667) Ensembl
Ensembl
MGI		 PMID:15728667 GO_REF:0000107 MGI:3604843 NCBI chr 1:118,883,047...118,989,510
Ensembl chr 1:118,883,046...118,989,556 		JBrowse link
G TFAP2A transcription factor AP-2 alpha involved_in
acts_upstream_of_or_within		 ISS
ISO		 (MGI:80520|PMID:8622765) UniProt
UniProt
MGI		 PMID:8622765 GO_REF:0000024 MGI:80520 NCBI chr 6:10,396,677...10,419,659
Ensembl chr 6:10,393,186...10,419,659 		JBrowse link
G TGFBR1 transforming growth factor beta receptor 1 involved_in
acts_upstream_of_or_within		 ISS
IEA
ISO		 (MGI:3701721|PMID:16806156) BHF-UCL
Ensembl
BHF-UCL
MGI		 PMID:16806156 GO_REF:0000024 GO_REF:0000107 MGI:3701721 NCBI chr 9:99,103,647...99,154,192
Ensembl chr 9:99,104,038...99,154,192 		JBrowse link
G TGFBR2 transforming growth factor beta receptor 2 involved_in ISS
IEA		 BHF-UCL
Ensembl
BHF-UCL		 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:30,606,356...30,694,142
Ensembl chr 3:30,606,601...30,694,142 		JBrowse link
G TWIST1 twist family bHLH transcription factor 1 involved_in
acts_upstream_of_or_within		 IMP
IEA
ISO		 (PMID:8988166), (PMID:8988167)
(MGI:3042355|PMID:15030764)		 BHF-UCL
BHF-UCL
Ensembl
MGI		 PMID:8988166 PMID:8988167 PMID:15030764 GO_REF:0000107 MGI:3042355 NCBI chr 7:19,113,047...19,117,636
Ensembl chr 7:19,020,991...19,117,636 		JBrowse link
G TWIST2 twist family bHLH transcription factor 2 acts_upstream_of_or_within ISO (MGI:3042355|PMID:15030764) MGI PMID:15030764 MGI:3042355 NCBI chr 2:238,848,085...238,910,534
Ensembl chr 2:238,848,032...238,910,534 		JBrowse link
G WDR19 WD repeat domain 19 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:5314316|PMID:22228095) Ensembl
Ensembl
MGI		 PMID:22228095 GO_REF:0000107 MGI:5314316 NCBI chr 4:39,182,529...39,285,810
Ensembl chr 4:39,182,504...39,285,810 		JBrowse link
G WNT9B Wnt family member 9B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:3696935|PMID:16998816)
(MGI:3588895|PMID:16054034)		 Ensembl
MGI
Ensembl		 PMID:16054034 PMID:16998816 GO_REF:0000107 MGI:3588895 MGI:3696935 NCBI chr17:46,833,189...46,886,738
Ensembl chr17:46,833,201...46,886,730 		JBrowse link
embryonic neurocranium morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FGF8 fibroblast growth factor 8 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:5796907|PMID:27395007) Ensembl
Ensembl
MGI		 PMID:27395007 GO_REF:0000107 MGI:5796907 NCBI chr10:101,770,109...101,780,369
Ensembl chr10:101,770,109...101,780,371 		JBrowse link
G FUZ fuzzy planar cell polarity protein acts_upstream_of_or_within ISO (MGI:5796907|PMID:27395007) MGI PMID:27395007 MGI:5796907 NCBI chr19:49,806,866...49,813,553
Ensembl chr19:49,806,866...49,817,376 		JBrowse link
G GLI3 GLI family zinc finger 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:5796907|PMID:27395007) Ensembl
Ensembl
MGI		 PMID:27395007 GO_REF:0000107 MGI:5796907 NCBI chr 7:41,960,949...42,264,268
Ensembl chr 7:41,960,949...42,264,100 		JBrowse link
G HOXA1 homeobox A1 involved_in IMP (PMID:16155570) DFLAT
DFLAT		 PMID:16155570 NCBI chr 7:27,092,993...27,096,000
Ensembl chr 7:27,092,993...27,096,000 		JBrowse link
G MED12 mediator complex subunit 12 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:4839544|PMID:20589884) Ensembl
Ensembl
MGI		 PMID:20589884 GO_REF:0000107 MGI:4839544 NCBI chr  X:71,118,596...71,142,450
Ensembl chr  X:71,118,543...71,144,103 		JBrowse link
G MTHFD1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 involved_in ISS BHF-UCL
BHF-UCL		 GO_REF:0000024 NCBI chr14:64,388,353...64,460,025
Ensembl chr14:64,388,031...64,463,457 		JBrowse link
G MTHFD1L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like involved_in ISS
IEA		 BHF-UCL
Ensembl
BHF-UCL		 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:150,865,702...151,101,887
Ensembl chr 6:150,865,679...151,101,887 		JBrowse link
G NDST1 N-deacetylase and N-sulfotransferase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:3588476|PMID:16020517) Ensembl
Ensembl
MGI		 PMID:16020517 GO_REF:0000107 MGI:3588476 NCBI chr 5:150,497,779...150,558,211
Ensembl chr 5:150,485,818...150,558,211 		JBrowse link
G TGFB2 transforming growth factor beta 2 ISO RGD PMID:11002343 RGD:1579866 NCBI chr 1:218,345,336...218,444,619
Ensembl chr 1:218,345,336...218,444,619 		JBrowse link
G TGFB3 transforming growth factor beta 3 involved_in IEA
ISO		 Ensembl
Ensembl
RGD		 PMID:11002343 GO_REF:0000107 RGD:1579866 NCBI chr14:75,958,097...75,983,011
Ensembl chr14:75,958,097...75,983,011 		JBrowse link
G TULP3 TUB like protein 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:3841503|PMID:19286674) Ensembl
Ensembl
MGI		 PMID:19286674 GO_REF:0000107 MGI:3841503 NCBI chr12:2,890,891...2,941,138
Ensembl chr12:2,877,223...2,941,138 		JBrowse link
embryonic skeletal joint development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EXT1 exostosin glycosyltransferase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:4946896|PMID:21185280) Ensembl
MGI
Ensembl		 PMID:21185280 GO_REF:0000107 MGI:4946896 NCBI chr 8:117,794,490...118,111,826
Ensembl chr 8:117,794,490...118,111,826 		JBrowse link
G IHH Indian hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:3695832|PMID:17191253) Ensembl
MGI
Ensembl		 PMID:17191253 GO_REF:0000107 MGI:3695832 NCBI chr 2:219,054,424...219,060,921
Ensembl chr 2:219,054,424...219,060,921 		JBrowse link
G OSR1 odd-skipped related transcription factor 1 involved_in ISS
IEA		 BHF-UCL
Ensembl
BHF-UCL		 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:19,344,874...19,358,623
Ensembl chr 2:19,351,485...19,358,623 		JBrowse link
G OSR2 odd-skipped related transciption factor 2 involved_in ISS
IEA		 BHF-UCL
BHF-UCL
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:98,944,442...98,952,100
Ensembl chr 8:98,944,403...98,952,104 		JBrowse link
G SLC2A10 solute carrier family 2 member 10 acts_upstream_of_or_within IMP (PMID:18565096) ARUK-UCL
ARUK-UCL		 PMID:18565096 NCBI chr20:46,708,320...46,736,347
Ensembl chr20:46,709,649...46,736,347 		JBrowse link
G WNT9A Wnt family member 9A involved_in ISS BHF-UCL
BHF-UCL		 GO_REF:0000024 NCBI chr 1:227,918,656...227,947,932
Ensembl chr 1:227,918,656...227,947,932 		JBrowse link
embryonic skeletal joint morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AXIN1 axin 1 acts_upstream_of_or_within ISO MGI MGI:48782 NCBI chr16:287,440...352,723
Ensembl chr16:287,440...352,723 		JBrowse link
G BMP4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:1270933|PMID:9664686) Ensembl
MGI
Ensembl		 PMID:9664686 GO_REF:0000107 MGI:1270933 NCBI chr14:53,949,736...53,956,891
Ensembl chr14:53,949,736...53,958,761 		JBrowse link
G BMP7 bone morphogenetic protein 7 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:1270933|PMID:9664686) Ensembl
Ensembl
MGI		 PMID:9664686 GO_REF:0000107 MGI:1270933 NCBI chr20:57,168,753...57,266,641
Ensembl chr20:57,168,753...57,266,641 		JBrowse link
G COL2A1 collagen type II alpha 1 chain involved_in IMP (PMID:16752401) BHF-UCL
BHF-UCL		 PMID:16752401 NCBI chr12:47,972,967...48,006,212
Ensembl chr12:47,972,967...48,004,554 		JBrowse link
G HOXA11 homeobox A11 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:4867119|PMID:20978074) Ensembl
MGI
Ensembl		 PMID:20978074 GO_REF:0000107 MGI:4867119 NCBI chr 7:27,181,157...27,185,232
Ensembl chr 7:27,181,157...27,185,232 		JBrowse link
G HOXC11 homeobox C11 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:4867119|PMID:20978074) MGI
Ensembl
Ensembl		 PMID:20978074 GO_REF:0000107 MGI:4867119 NCBI chr12:53,973,126...53,977,643
Ensembl chr12:53,973,126...53,977,643 		JBrowse link
G HOXD11 homeobox D11 acts_upstream_of_or_within ISO (MGI:4867119|PMID:20978074) MGI PMID:20978074 MGI:4867119 NCBI chr 2:176,107,280...176,115,679
Ensembl chr 2:176,104,216...176,109,754 		JBrowse link
G HYAL1 hyaluronidase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:3836537|PMID:18772348) Ensembl
Ensembl
MGI		 PMID:18772348 GO_REF:0000107 MGI:3836537 NCBI chr 3:50,299,893...50,312,381
Ensembl chr 3:50,299,890...50,312,381 		JBrowse link
G NOG noggin involved_in IMP (PMID:16151340) BHF-UCL
BHF-UCL		 PMID:16151340 NCBI chr17:56,593,699...56,595,611
Ensembl chr17:56,593,699...56,595,611 		JBrowse link
G OSR1 odd-skipped related transcription factor 1 involved_in ISS
IEA		 BHF-UCL
Ensembl
BHF-UCL		 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:19,344,874...19,358,623
Ensembl chr 2:19,351,485...19,358,623 		JBrowse link
G OSR2 odd-skipped related transciption factor 2 involved_in ISS
IEA		 BHF-UCL
BHF-UCL
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:98,944,442...98,952,100
Ensembl chr 8:98,944,403...98,952,104 		JBrowse link
G SHOX2 short stature homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:3805084|PMID:18514492) Ensembl
MGI
Ensembl		 PMID:18514492 GO_REF:0000107 MGI:3805084 NCBI chr 3:158,095,905...158,106,420
Ensembl chr 3:158,095,905...158,106,420 		JBrowse link
embryonic skeletal limb joint morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTNNB1 catenin beta 1 involved_in ISS
IEA		 BHF-UCL
Ensembl
BHF-UCL		 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:41,199,505...41,240,443
Ensembl chr 3:41,194,741...41,260,096 		JBrowse link
G OSR1 odd-skipped related transcription factor 1 involved_in ISS
IEA		 BHF-UCL
Ensembl
BHF-UCL		 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:19,344,874...19,358,623
Ensembl chr 2:19,351,485...19,358,623 		JBrowse link
G OSR2 odd-skipped related transciption factor 2 involved_in ISS
IEA		 BHF-UCL
BHF-UCL
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:98,944,442...98,952,100
Ensembl chr 8:98,944,403...98,952,104 		JBrowse link
embryonic skeletal system morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AC012531.3 novel protein, readthrough between HOXC10 and HOXC5 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 Ensembl chr12:53,985,845...54,034,888 JBrowse link
G ALX1 ALX homeobox 1 involved_in
acts_upstream_of_or_within		 IBA
ISO		 (PMID:21873635)
(MGI:1314705|PMID:9847249), (MGI:3604843|PMID:15728667)		 GO_Central
GO_Central
MGI		 PMID:9847249 PMID:15728667 PMID:21873635 MGI:1314705 MGI:3604843 NCBI chr12:85,280,220...85,301,784
Ensembl chr12:85,280,220...85,301,784 		JBrowse link
G ALX3 ALX homeobox 3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:2151109|PMID:11641221), (MGI:3604843|PMID:15728667) MGI
Ensembl		 PMID:11641221 PMID:15728667 GO_REF:0000107 MGI:2151109 MGI:3604843 NCBI chr 1:110,059,870...110,070,672
Ensembl chr 1:110,059,870...110,070,672 		JBrowse link
G ALX4 ALX homeobox 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:1314705|PMID:9847249)
(MGI:2151109|PMID:11641221)
(MGI:3604843|PMID:15728667)		 Ensembl
Ensembl
MGI		 PMID:9847249 PMID:11641221 PMID:15728667 GO_REF:0000107 MGI:1314705 MGI:2151109 MGI:3604843 NCBI chr11:44,260,440...44,310,139
Ensembl chr11:44,260,440...44,310,139 		JBrowse link
G ASXL2 ASXL transcriptional regulator 2 acts_upstream_of_or_within ISO (MGI:3840399|PMID:19270745) MGI PMID:19270745 MGI:3840399 NCBI chr 2:25,733,753...25,878,487
Ensembl chr 2:25,733,753...25,878,487 		JBrowse link
G BMI1 BMI1 proto-oncogene, polycomb ring finger acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1932296|PMID:11290297) MGI
Ensembl		 PMID:11290297 GO_REF:0000107 MGI:1932296 NCBI chr10:22,321,099...22,331,484
Ensembl chr10:22,321,099...22,331,484 		JBrowse link
G BMP4 bone morphogenetic protein 4 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3640733|PMID:16712836) MGI
Ensembl		 PMID:16712836 GO_REF:0000107 MGI:3640733 NCBI chr14:53,949,736...53,956,891
Ensembl chr14:53,949,736...53,958,761 		JBrowse link
G CHST11 carbohydrate sulfotransferase 11 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3767479|PMID:16079159) MGI
Ensembl		 PMID:16079159 GO_REF:0000107 MGI:3767479 NCBI chr12:104,456,948...104,762,014
Ensembl chr12:104,455,295...104,762,014 		JBrowse link
G COL11A1 collagen type XI alpha 1 chain involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:53676|PMID:4100752) Ensembl
Ensembl
MGI		 PMID:4100752 GO_REF:0000107 MGI:53676 NCBI chr 1:102,876,473...103,108,522
Ensembl chr 1:102,876,467...103,108,872 		JBrowse link
G COMMD3-BMI1 COMMD3-BMI1 readthrough involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:22,316,388...22,331,484
Ensembl chr10:22,316,388...22,329,542 		JBrowse link
G DLG1 discs large MAGUK scaffold protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:1930428|PMID:11238884) Ensembl
Ensembl
MGI		 PMID:11238884 GO_REF:0000107 MGI:1930428 NCBI chr 3:197,042,560...197,299,321
Ensembl chr 3:197,042,560...197,299,330 		JBrowse link
G DSCAML1 DS cell adhesion molecule like 1 involved_in IDA (PMID:12051741) UniProt
UniProt		 PMID:12051741 NCBI chr11:117,427,772...117,817,514
Ensembl chr11:117,427,772...117,817,525 		JBrowse link
G DYNC2I1 dynein 2 intermediate chain 1 involved_in IMP (PMID:23910462) GO_Central
GO_Central		 PMID:23910462 NCBI chr 7:158,839,245...158,958,698
Ensembl chr 7:158,856,558...158,956,747 		JBrowse link
G EYA1 EYA transcriptional coactivator and phosphatase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:1344210|PMID:10471511) Ensembl
Ensembl
MGI		 PMID:10471511 GO_REF:0000107 MGI:1344210 NCBI chr 8:71,197,433...71,548,094
Ensembl chr 8:71,197,433...71,592,025 		JBrowse link
G FLVCR1 FLVCR heme transporter 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:5471193|PMID:23187127) Ensembl
Ensembl
MGI		 PMID:23187127 GO_REF:0000107 MGI:5471193 NCBI chr 1:212,858,275...212,899,363
Ensembl chr 1:212,858,275...212,899,363 		JBrowse link
G FOXC2 forkhead box C2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1339313|PMID:9409679) MGI
Ensembl		 PMID:9409679 GO_REF:0000107 MGI:1339313 NCBI chr16:86,566,829...86,569,728
Ensembl chr16:86,566,829...86,569,728 		JBrowse link
G FUZ fuzzy planar cell polarity protein involved_in ISS UniProt
UniProt		 GO_REF:0000024 NCBI chr19:49,806,866...49,813,553
Ensembl chr19:49,806,866...49,817,376 		JBrowse link
G GLI3 GLI family zinc finger 3 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3604843|PMID:15728667) MGI
Ensembl		 PMID:15728667 GO_REF:0000107 MGI:3604843 NCBI chr 7:41,960,949...42,264,268
Ensembl chr 7:41,960,949...42,264,100 		JBrowse link
G GSC goosecoid homeobox involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:76246|PMID:7555726)
(MGI:76955|PMID:7555718)		 Ensembl
Ensembl
MGI		 PMID:7555718 PMID:7555726 GO_REF:0000107 MGI:76246 MGI:76955 NCBI chr14:94,768,223...94,770,113
Ensembl chr14:94,768,223...94,770,113 		JBrowse link
G HOXA2 homeobox A2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3525808|PMID:15634706) MGI
Ensembl		 PMID:15634706 GO_REF:0000107 MGI:3525808 NCBI chr 7:27,100,354...27,102,683
Ensembl chr 7:27,100,354...27,102,686 		JBrowse link
G HOXA3 homeobox A3 involved_in
acts_upstream_of_or_within		 IBA
IEA
ISO		 (PMID:21873635)
(MGI:1195045|PMID:9441667)		 GO_Central
GO_Central
Ensembl
MGI		 PMID:9441667 PMID:21873635 GO_REF:0000107 MGI:1195045 NCBI chr 7:27,107,010...27,152,583
Ensembl chr 7:27,106,184...27,152,583 		JBrowse link
G HOXA4 homeobox A4 involved_in
acts_upstream_of_or_within		 IBA
ISO		 (PMID:21873635)
(MGI:74948|PMID:7628700)
(MGI:67413|PMID:7918106)		 GO_Central
MGI
GO_Central		 PMID:7628700 PMID:7918106 PMID:21873635 MGI:67413 MGI:74948 NCBI chr 7:27,128,525...27,130,757
Ensembl chr 7:27,128,507...27,130,780 		JBrowse link
G HOXA5 homeobox A5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:3723390|PMID:17417799)
(MGI:1203259|PMID:9603431), (MGI:63693|PMID:7901120)		 Ensembl
Ensembl
MGI		 PMID:7901120 PMID:9603431 PMID:17417799 GO_REF:0000107 MGI:1203259 MGI:3723390 MGI:63693 NCBI chr 7:27,141,052...27,143,681
Ensembl chr 7:27,141,052...27,143,681 		JBrowse link
G HOXA6 homeobox A6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:27,145,396...27,147,774
Ensembl chr 7:27,145,396...27,150,603 		JBrowse link
G HOXA7 homeobox A7 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:1313067|PMID:9784603) Ensembl
Ensembl
MGI		 PMID:9784603 GO_REF:0000107 MGI:1313067 NCBI chr 7:27,153,716...27,156,675
Ensembl chr 7:27,153,716...27,157,936 		JBrowse link
G HOXA9 homeobox A9 involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr 7:27,162,438...27,165,537
Ensembl chr 7:27,162,438...27,175,180 		JBrowse link
G HOXB1 homeobox B1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:1859107|PMID:10885747) Ensembl
Ensembl
MGI		 PMID:10885747 GO_REF:0000107 MGI:1859107 NCBI chr17:48,528,526...48,531,011
Ensembl chr17:48,528,526...48,531,011 		JBrowse link
G HOXB2 homeobox B2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:1859107|PMID:10885747) Ensembl
Ensembl
MGI		 PMID:10885747 GO_REF:0000107 MGI:1859107 NCBI chr17:48,542,655...48,545,109
Ensembl chr17:48,540,894...48,545,109 		JBrowse link
G HOXB3 homeobox B3 involved_in
acts_upstream_of_or_within		 IBA
ISO
IEA		 (PMID:21873635)
(MGI:1859107|PMID:10885747)
(MGI:1195045|PMID:9441667)		 GO_Central
GO_Central
MGI
Ensembl		 PMID:9441667 PMID:10885747 PMID:21873635 GO_REF:0000107 MGI:1195045 MGI:1859107 NCBI chr17:48,548,870...48,590,241
Ensembl chr17:48,548,870...48,604,912 		JBrowse link
G HOXB4 homeobox B4 involved_in
acts_upstream_of_or_within		 IBA
ISO
IEA		 (PMID:21873635)
(MGI:1859107|PMID:10885747)
(MGI:74948|PMID:7628700)		 GO_Central
MGI
Ensembl
GO_Central		 PMID:7628700 PMID:10885747 PMID:21873635 GO_REF:0000107 MGI:1859107 MGI:74948 NCBI chr17:48,575,507...48,578,350
Ensembl chr17:48,575,507...48,578,350 		JBrowse link
G HOXB5 homeobox B5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:1859107|PMID:10885747)
(MGI:70296|PMID:7828847)		 Ensembl
MGI
Ensembl		 PMID:7828847 PMID:10885747 GO_REF:0000107 MGI:1859107 MGI:70296 NCBI chr17:48,591,257...48,593,779
Ensembl chr17:48,591,257...48,593,779 		JBrowse link
G HOXB6 homeobox B6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:1859107|PMID:10885747) Ensembl
MGI
Ensembl		 PMID:10885747 GO_REF:0000107 MGI:1859107 NCBI chr17:48,595,751...48,604,986
Ensembl chr17:48,595,751...48,604,992 		JBrowse link
G HOXB7 homeobox B7 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:1859107|PMID:10885747)
(MGI:1313067|PMID:9784603)		 Ensembl
MGI
Ensembl		 PMID:9784603 PMID:10885747 GO_REF:0000107 MGI:1313067 MGI:1859107 NCBI chr17:48,607,232...48,611,017
Ensembl chr17:48,607,232...48,633,572 		JBrowse link
G HOXB8 homeobox B8 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:1859107|PMID:10885747)
(MGI:1349283|PMID:10559485)		 Ensembl
MGI
Ensembl		 PMID:10559485 PMID:10885747 GO_REF:0000107 MGI:1349283 MGI:1859107 NCBI chr17:48,612,346...48,615,292
Ensembl chr17:48,611,377...48,615,292 		JBrowse link
G HOXB9 homeobox B9 involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr17:48,621,156...48,626,358
Ensembl chr17:48,621,156...48,626,358 		JBrowse link
G HOXC4 homeobox C4 involved_in IBA (PMID:21873635) GO_Central
GO_Central		 PMID:21873635 NCBI chr12:54,016,888...54,056,030
Ensembl chr12:54,016,931...54,056,030 		JBrowse link
G HOXC9 homeobox C9 involved_in
acts_upstream_of_or_within		 IBA
IEA
ISO		 (PMID:21873635)
(MGI:73980|PMID:7547473)		 GO_Central
GO_Central
Ensembl
MGI		 PMID:7547473 PMID:21873635 GO_REF:0000107 MGI:73980 NCBI chr12:54,000,161...54,003,337
Ensembl chr12:53,994,895...54,003,337 		JBrowse link
G HOXD10 homeobox D10 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:1350864|PMID:10642795) Ensembl
Ensembl
MGI		 PMID:10642795 GO_REF:0000107 MGI:1350864 NCBI chr 2:176,116,778...176,119,937
Ensembl chr 2:176,108,790...176,119,937 		JBrowse link
G HOXD3 homeobox D3 involved_in
acts_upstream_of_or_within		 IBA
IEA
ISS
ISO		 (PMID:21873635)
(MGI:63793|PMID:7910549), (MGI:67616|PMID:7913519)
(MGI:67616|PMID:7913519)		 GO_Central
GO_Central
Ensembl
UniProt
MGI
UniProt		 PMID:7910549 PMID:7913519 PMID:21873635 GO_REF:0000024 GO_REF:0000107 MGI:63793 MGI:67616 NCBI chr 2:176,152,529...176,173,098
Ensembl chr 2:176,136,612...176,173,102 		JBrowse link
G HOXD4 homeobox D4 involved_in
acts_upstream_of_or_within		 IBA
IEA
ISO		 (PMID:21873635)
(MGI:74948|PMID:7628700)
(MGI:72992|PMID:7750651)		 GO_Central
Ensembl
GO_Central
MGI		 PMID:7628700 PMID:7750651 PMID:21873635 GO_REF:0000107 MGI:72992 MGI:74948 NCBI chr 2:176,151,550...176,153,226
Ensembl chr 2:176,151,550...176,153,226 		JBrowse link
G HOXD9 homeobox D9 involved_in
acts_upstream_of_or_within		 IBA
IEA
ISO		 (PMID:21873635)
(MGI:1350864|PMID:10642795)		 GO_Central
Ensembl
GO_Central
MGI		 PMID:10642795 PMID:21873635 GO_REF:0000107 MGI:1350864 NCBI chr 2:176,122,719...176,124,937
Ensembl chr 2:176,122,719...176,124,937 		JBrowse link
G HSPG2 heparan sulfate proteoglycan 2 acts_upstream_of_or_within ISO (MGI:1349497|PMID:10579729) MGI PMID:10579729 MGI:1349497 NCBI chr 1:21,822,244...21,937,310
Ensembl chr 1:21,822,244...21,937,310 		JBrowse link
G MDFI MyoD family inhibitor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:1312999|PMID:9799236) Ensembl
Ensembl
MGI		 PMID:9799236 GO_REF:0000107 MGI:1312999 NCBI chr 6:41,637,018...41,654,244
Ensembl chr 6:41,636,882...41,654,244 		JBrowse link
G MEF2C myocyte enhancer factor 2C acts_upstream_of_or_within ISO (MGI:3714538|PMID:17420000) MGI PMID:17420000 MGI:3714538 NCBI chr 5:88,717,117...88,904,105
Ensembl chr 5:88,717,117...88,904,257 		JBrowse link
G MEGF8 multiple EGF like domains 8 involved_in ISS
IEA		 UniProt
CAFA
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr19:42,325,635...42,378,765
Ensembl chr19:42,325,609...42,378,769 		JBrowse link
G MEN1 menin 1 acts_upstream_of_or_within ISO (MGI:3763871|PMID:17927973) MGI PMID:17927973 MGI:3763871 NCBI chr11:64,803,516...64,811,294
Ensembl chr11:64,803,510...64,811,294 		JBrowse link
G MYCN MYCN proto-oncogene, bHLH transcription factor acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3790402|PMID:17360777) MGI
Ensembl		 PMID:17360777 GO_REF:0000107 MGI:3790402 NCBI chr 2:15,940,550...15,947,004
Ensembl chr 2:15,940,550...15,947,007 		JBrowse link
G MYF5 myogenic factor 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:1861090|PMID:10929709) Ensembl
Ensembl
MGI		 PMID:10929709 GO_REF:0000107 MGI:1861090 NCBI chr12:80,716,912...80,719,671
Ensembl chr12:80,716,912...80,719,671 		JBrowse link
G OSR2 odd-skipped related transciption factor 2 involved_in
acts_upstream_of_or_within		 ISS
IEA
ISO		 (MGI:3513962|PMID:15175245) UniProt
Ensembl
UniProt
MGI		 PMID:15175245 GO_REF:0000024 GO_REF:0000107 MGI:3513962 NCBI chr 8:98,944,442...98,952,100
Ensembl chr 8:98,944,403...98,952,104 		JBrowse link
G PCGF2 polycomb group ring finger 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:1932296|PMID:11290297) Ensembl
Ensembl
MGI		 PMID:11290297 GO_REF:0000107 MGI:1932296 NCBI chr17:38,733,898...38,749,792
Ensembl chr17:38,733,898...38,749,817 		JBrowse link
G PDGFRA platelet derived growth factor receptor alpha involved_in ISS UniProt
UniProt		 GO_REF:0000024 NCBI chr 4:54,229,293...54,298,245
Ensembl chr 4:54,229,280...54,298,245 		JBrowse link
G PRRX1 paired related homeobox 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1306737|PMID:9729491), (MGI:1321048|PMID:9876178), (MGI:2149056|PMID:11532916)
(MGI:73363|PMID:7758948)		 MGI
Ensembl		 PMID:7758948 PMID:9729491 PMID:9876178 PMID:11532916 GO_REF:0000107 MGI:1306737 MGI:1321048 MGI:2149056 MGI:73363 NCBI chr 1:170,662,768...170,739,421
Ensembl chr 1:170,662,728...170,739,421 		JBrowse link
G PRRX2 paired related homeobox 2 acts_upstream_of_or_within ISO (MGI:1306737|PMID:9729491), (MGI:1321048|PMID:9876178), (MGI:2149056|PMID:11532916) MGI PMID:9729491 PMID:9876178 PMID:11532916 MGI:1306737 MGI:1321048 MGI:2149056 NCBI chr 9:129,665,647...129,722,674
Ensembl chr 9:129,665,647...129,722,674 		JBrowse link
G SATB2 SATB homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:3692344|PMID:16751105)
(MGI:3695004|PMID:16960803)		 Ensembl
Ensembl
MGI		 PMID:16751105 PMID:16960803 GO_REF:0000107 MGI:3692344 MGI:3695004 NCBI chr 2:199,269,500...199,471,266
Ensembl chr 2:199,269,505...199,471,266 		JBrowse link
G SIX1 SIX homeobox 1 involved_in
acts_upstream_of_or_within		 ISS
IEA
ISO		 (MGI:3578604|PMID:15788460) UniProt
UniProt
Ensembl
MGI		 PMID:15788460 GO_REF:0000024 GO_REF:0000107 MGI:3578604 NCBI chr14:60,643,421...60,649,477
Ensembl chr14:60,643,421...60,658,259 		JBrowse link
G SIX2 SIX homeobox 2 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3525808|PMID:15634706) MGI
Ensembl		 PMID:15634706 GO_REF:0000107 MGI:3525808 NCBI chr 2:45,005,182...45,009,452
Ensembl chr 2:45,005,182...45,009,452 		JBrowse link
G SIX4 SIX homeobox 4 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3578604|PMID:15788460) MGI
Ensembl		 PMID:15788460 GO_REF:0000107 MGI:3578604 NCBI chr14:60,709,539...60,724,351
Ensembl chr14:60,709,539...60,724,351 		JBrowse link
G SOX11 SRY-box transcription factor 11 involved_in ISS
IEA		 UniProt
UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:5,692,384...5,701,385
Ensembl chr 2:5,692,384...5,701,385 		JBrowse link
G TBX15 T-box transcription factor 15 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3604843|PMID:15728667) MGI
Ensembl		 PMID:15728667 GO_REF:0000107 MGI:3604843 NCBI chr 1:118,883,047...118,989,510
Ensembl chr 1:118,883,046...118,989,556 		JBrowse link
G TWIST1 twist family bHLH transcription factor 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3042355|PMID:15030764) MGI
Ensembl		 PMID:15030764 GO_REF:0000107 MGI:3042355 NCBI chr 7:19,113,047...19,117,636
Ensembl chr 7:19,020,991...19,117,636 		JBrowse link
G WNT9A Wnt family member 9A acts_upstream_of_or_within ISO (MGI:3701031|PMID:16818445) MGI PMID:16818445 MGI:3701031 NCBI chr 1:227,918,656...227,947,932
Ensembl chr 1:227,918,656...227,947,932 		JBrowse link
G ZEB1 zinc finger E-box binding homeobox 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:1195626|PMID:9389660) MGI
Ensembl
Ensembl		 PMID:9389660 GO_REF:0000107 MGI:1195626 NCBI chr10:31,318,417...31,529,804
Ensembl chr10:31,318,495...31,529,814 		JBrowse link
embryonic viscerocranium morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHST11 carbohydrate sulfotransferase 11 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:3767479|PMID:16079159) Ensembl
Ensembl
MGI		 PMID:16079159 GO_REF:0000107 MGI:3767479 NCBI chr12:104,456,948...104,762,014
Ensembl chr12:104,455,295...104,762,014 		JBrowse link
G FOXC2 forkhead box C2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:1339313|PMID:9409679) Ensembl
Ensembl
MGI		 PMID:9409679 GO_REF:0000107 MGI:1339313 NCBI chr16:86,566,829...86,569,728
Ensembl chr16:86,566,829...86,569,728 		JBrowse link
G HOXA2 homeobox A2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:3608156|PMID:16221728) Ensembl
Ensembl
MGI		 PMID:16221728 GO_REF:0000107 MGI:3608156 NCBI chr 7:27,100,354...27,102,683
Ensembl chr 7:27,100,354...27,102,686 		JBrowse link
G LHX1 LIM homeobox 1 involved_in ISS
IEA		 UniProt
Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr17:36,936,785...36,944,612
Ensembl chr17:36,936,785...36,944,612 		JBrowse link
G MEF2C myocyte enhancer factor 2C acts_upstream_of_or_within ISO (MGI:3714538|PMID:17420000) MGI PMID:17420000 MGI:3714538 NCBI chr 5:88,717,117...88,904,105
Ensembl chr 5:88,717,117...88,904,257 		JBrowse link
G MTHFD1 methylenetetrahydrofolate dehydrogenase, cyclohydrolase and formyltetrahydrofolate synthetase 1 involved_in ISS BHF-UCL
BHF-UCL		 GO_REF:0000024 NCBI chr14:64,388,353...64,460,025
Ensembl chr14:64,388,031...64,463,457 		JBrowse link
G MTHFD1L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like involved_in ISS
IEA		 BHF-UCL
BHF-UCL
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:150,865,702...151,101,887
Ensembl chr 6:150,865,679...151,101,887 		JBrowse link
G NDST1 N-deacetylase and N-sulfotransferase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:3588476|PMID:16020517) Ensembl
Ensembl
MGI		 PMID:16020517 GO_REF:0000107 MGI:3588476 NCBI chr 5:150,497,779...150,558,211
Ensembl chr 5:150,485,818...150,558,211 		JBrowse link
G NIPBL NIPBL cohesin loading factor involved_in
acts_upstream_of_or_within		 IBA
IEA
ISO		 (PMID:21873635)
(MGI:4367301|PMID:19763162)		 GO_Central
GO_Central
Ensembl
MGI		 PMID:19763162 PMID:21873635 GO_REF:0000107 MGI:4367301 NCBI chr 5:36,876,769...37,066,413
Ensembl chr 5:36,876,769...37,066,413 		JBrowse link
G RDH10 retinol dehydrogenase 10 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (MGI:3709664|PMID:17473173) Ensembl
Ensembl
MGI		 PMID:17473173 GO_REF:0000107 MGI:3709664 NCBI chr 8:73,294,602...73,325,281
Ensembl chr 8:73,294,602...73,325,281 		JBrowse link
G TBX1 T-box transcription factor 1 involved_in IMP (PMID:14585638) UniProt
UniProt		 PMID:14585638 NCBI chr22:19,756,703...19,783,593
Ensembl chr22:19,756,703...19,783,593 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19824
    multicellular organismal process 8969
      multicellular organism development 5584
        system development 4856
          skeletal system development 645
            embryonic skeletal system development 148
              embryonic skeletal joint development + 17
              embryonic skeletal system morphogenesis + 110
Path 2
Term Annotations click to browse term
  biological_process 19824
    developmental process 7636
      anatomical structure development 6978
        multicellular organism development 5584
          embryo development 1403
            embryo development ending in birth or egg hatching 898
              chordate embryonic development 875
                embryonic skeletal system development 148
                  embryonic skeletal joint development + 17
                  embryonic skeletal system morphogenesis + 110
paths to the root