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ONTOLOGY REPORT - ANNOTATIONS

Term:skeletal system morphogenesis
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Accession:GO:0048705 term browser browse the term
Definition:The process in which the anatomical structures of the skeleton are generated and organized.
Synonyms:exact_synonym: skeletal morphogenesis


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skeletal system morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACVR2B activin A receptor type 2B acts_upstream_of_or_within ISO (PMID:16845371)
(PMID:16991118)		 MGI PMID:16845371 PMID:16991118 NCBI chr 3:38,350,838...38,389,839
Ensembl chr 3:38,633,093...38,662,063 		JBrowse link
G ALX4 ALX homeobox 4 acts_upstream_of_or_within ISO (PMID:9374397) MGI PMID:9374397 NCBI chr11:44,219,865...44,269,597 JBrowse link
G ANKRD11 ankyrin repeat domain containing 11 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:21782149)
(PMID:17986521)		 MGI
Ensembl		 PMID:17986521 PMID:21782149 GO_REF:0000107 NCBI chr16:69,994,926...70,242,659
Ensembl chr16:89,633,849...89,683,311 		JBrowse link
G ARID5B AT-rich interaction domain 5B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17143286) Ensembl
MGI		 PMID:17143286 GO_REF:0000107 NCBI chr10:58,426,519...58,621,986
Ensembl chr10:60,756,484...60,952,174 		JBrowse link
G COL11A1 collagen type XI alpha 1 chain involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:7859283) Ensembl
MGI		 PMID:7859283 GO_REF:0000107 NCBI chr 1:105,538,215...105,769,973
Ensembl chr 1:104,249,891...104,481,259 		JBrowse link
G COL11A2 collagen type XI alpha 2 chain involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11668593) Ensembl
MGI		 PMID:11668593 GO_REF:0000107 NCBI chr 6:32,734,950...32,765,837
Ensembl chr 6:33,849,885...33,879,635 		JBrowse link
G COL1A1 collagen type I alpha 1 chain involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17440987) Ensembl
MGI		 PMID:17440987 GO_REF:0000107 NCBI chr17:44,274,349...44,291,764
Ensembl chr17:49,150,677...49,166,677 		JBrowse link
G COL2A1 collagen type II alpha 1 chain acts_upstream_of_or_within ISO (PMID:7590256), (PMID:9915573)
(PMID:7276808), (PMID:8192242)		 MGI PMID:7276808 PMID:7590256 PMID:8192242 PMID:9915573 NCBI chr12:40,726,137...40,757,690 JBrowse link
G CSRNP1 cysteine and serine rich nuclear protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17143286) Ensembl
MGI		 PMID:17143286 GO_REF:0000107 NCBI chr 3:39,038,039...39,050,754
Ensembl chr 3:39,318,438...39,331,228 		JBrowse link
G FGR FGR proto-oncogene, Src family tyrosine kinase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16964445) Ensembl
MGI		 PMID:16964445 GO_REF:0000107 NCBI chr 1:26,872,781...26,895,751
Ensembl chr 1:27,918,758...27,941,678 		JBrowse link
G FMN1 formin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17554679) Ensembl
MGI		 PMID:17554679 GO_REF:0000107 NCBI chr15:11,271,794...11,698,539
Ensembl chr15:30,114,113...30,495,909 		JBrowse link
G HHIP hedgehog interacting protein involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:136,989,818...137,085,407
Ensembl chr 4:148,651,597...148,744,619 		JBrowse link
G HOXB2 homeobox B2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9012503) Ensembl
MGI		 PMID:9012503 GO_REF:0000107 NCBI chr17:8,991,652...8,994,092
Ensembl chr17:9,176,313...9,178,713 		JBrowse link
G HOXB4 homeobox B4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9012503) Ensembl
MGI		 PMID:9012503 GO_REF:0000107 NCBI chr17:8,958,253...8,961,261
Ensembl chr17:9,143,173...9,146,161 		JBrowse link
G HOXB8 homeobox B8 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11311170) Ensembl
MGI		 PMID:11311170 GO_REF:0000107 NCBI chr17:8,920,986...8,924,649
Ensembl chr17:9,106,662...9,109,540 		JBrowse link
G HOXC8 homeobox C8 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11311170) Ensembl
MGI		 PMID:11311170 GO_REF:0000107 NCBI chr12:34,742,674...34,746,451
Ensembl chr12:35,531,200...35,534,420 		JBrowse link
G HOXD8 homeobox D8 acts_upstream_of_or_within ISO (PMID:11311170) MGI PMID:11311170 NCBI chr2B:63,409,223...63,412,146 JBrowse link
G HYAL2 hyaluronidase 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18772348) Ensembl
MGI		 PMID:18772348 GO_REF:0000107 NCBI chr 3:50,243,926...50,248,972
Ensembl chr 3:51,479,020...51,482,551 		JBrowse link
G IDUA alpha-L-iduronidase acts_upstream_of_or_within ISO (PMID:9097952) MGI PMID:9097952 NCBI chr 4:1,102,288...1,120,973
Ensembl chr 4:1,020,582...1,037,877 		JBrowse link
G LAMA5 laminin subunit alpha 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:58,673,850...58,677,760
Ensembl chr20:59,992,130...60,055,765 		JBrowse link
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:15469977) MGI PMID:15469977 NCBI chr12:12,121,411...12,288,590
Ensembl chr12:12,508,108...12,657,973 		JBrowse link
G MMP2 matrix metallopeptidase 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17440987) Ensembl
MGI		 PMID:17440987 GO_REF:0000107 NCBI chr16:35,711,866...35,738,881
Ensembl chr16:54,812,694...54,844,279 		JBrowse link
G MYC MYC proto-oncogene, bHLH transcription factor acts_upstream_of_or_within ISO (PMID:17523175) MGI PMID:17523175 NCBI chr 8:124,387,561...124,393,551
Ensembl chr 8:127,131,512...127,136,863 		JBrowse link
G NKX3-2 NK3 homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10572046) Ensembl
MGI		 PMID:10572046 GO_REF:0000107 NCBI chr 4:7,958,218...7,961,844
Ensembl chr 4:13,258,949...13,262,458 		JBrowse link
G NLE1 notchless homolog 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24824078) Ensembl
MGI		 PMID:24824078 GO_REF:0000107 NCBI chr17:21,643,865...21,654,169
Ensembl chr17:21,935,800...21,946,049 		JBrowse link
G P2RX7 purinergic receptor P2X 7 acts_upstream_of_or_within ISO (PMID:18519738) MGI PMID:18519738 NCBI chr12:118,731,761...118,786,039
Ensembl chr12:122,102,888...122,154,068 		JBrowse link
G PDGFRA platelet derived growth factor receptor alpha involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17143286) Ensembl
MGI		 PMID:17143286 GO_REF:0000107 NCBI chr 4:69,639,081...69,709,870
Ensembl chr 4:76,199,382...76,271,097 		JBrowse link
G PDGFRB platelet derived growth factor receptor beta acts_upstream_of_or_within ISO (PMID:17143286) MGI PMID:17143286 NCBI chr 5:145,538,330...145,580,312
Ensembl chr 5:151,543,891...151,585,530 		JBrowse link
G PLEKHA1 pleckstrin homology domain containing A1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17143286) Ensembl
MGI		 PMID:17143286 GO_REF:0000107 NCBI chr10:118,942,896...119,001,185
Ensembl chr10:122,354,765...122,412,588 		JBrowse link
G PRKRA protein activator of interferon induced protein kinase EIF2AK2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16571658) Ensembl
MGI		 PMID:16571658 GO_REF:0000107 NCBI chr2B:65,689,029...65,708,493
Ensembl chr2B:183,393,819...183,413,174 		JBrowse link
G PSEN1 presenilin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9160754) Ensembl
MGI		 PMID:9160754 GO_REF:0000107 NCBI chr14:53,718,299...53,802,684
Ensembl chr14:72,579,024...72,663,876 		JBrowse link
G RAB33B RAB33B, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:131,815,088...131,838,957
Ensembl chr 4:143,123,478...143,147,147 		JBrowse link
G RECQL4 RecQ like helicase 4 acts_upstream_of_or_within ISO (PMID:15703196) MGI PMID:15703196 Ensembl chr 8:144,267,101...144,276,985 JBrowse link
G RFLNA refilin A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24436304) TreeGrafter
MGI		 PMID:24436304 GO_REF:0000118 NCBI chr12:121,737,946...121,903,635
Ensembl chr12:126,164,592...126,191,071 		JBrowse link
G RFLNB refilin B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24436304) Ensembl
MGI
TreeGrafter		 PMID:24436304 GO_REF:0000107 GO_REF:0000118 NCBI chr17:359,016...367,464
Ensembl chr17:375,885...381,580 		JBrowse link
G RUNX2 RUNX family transcription factor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15030764) Ensembl
MGI		 PMID:15030764 GO_REF:0000107 NCBI chr 6:45,003,962...45,133,148
Ensembl chr 6:46,189,432...46,524,389 		JBrowse link
G RYK receptor like tyrosine kinase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10932185) Ensembl
MGI		 PMID:10932185 GO_REF:0000107 NCBI chr 3:131,174,507...131,296,815 JBrowse link
G SCHIP1 schwannomin interacting protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17143286) Ensembl
MGI		 PMID:17143286 GO_REF:0000107 NCBI chr 3:156,307,829...156,919,728
Ensembl chr 3:164,837,723...164,968,769 		JBrowse link
G SGPL1 sphingosine-1-phosphate lyase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17143286) Ensembl
MGI		 PMID:17143286 GO_REF:0000107 NCBI chr10:67,286,349...67,351,574
Ensembl chr10:69,812,092...69,876,438 		JBrowse link
G SH3PXD2B SH3 and PX domains 2B involved_in ISO (MGI:5800302|PMID:27711054) UniProt PMID:27711054 MGI:5800302 NCBI chr 5:167,678,633...167,807,960
Ensembl chr 5:174,591,759...174,719,957 		JBrowse link
G SIK3 SIK family kinase 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22318228) Ensembl
MGI		 PMID:22318228 GO_REF:0000107 NCBI chr11:111,680,884...111,932,424
Ensembl chr11:115,613,478...115,730,158 		JBrowse link
G SIX1 SIX homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12874121) Ensembl
MGI		 PMID:12874121 GO_REF:0000107 NCBI chr14:41,250,512...41,256,567
Ensembl chr14:59,515,324...59,527,494 		JBrowse link
G SPEF2 sperm flagellar 2 acts_upstream_of_or_within ISO (PMID:21715716) MGI PMID:21715716 NCBI chr 5:74,554,017...74,751,921
Ensembl chr 5:79,834,733...80,031,599 		JBrowse link
G TBX4 T-box transcription factor 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:55,554,549...55,587,253
Ensembl chr17:60,677,518...60,705,413 		JBrowse link
G TCF15 transcription factor 15 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:8955271) Ensembl
MGI		 PMID:8955271 GO_REF:0000107 NCBI chr20:811,907...817,971 JBrowse link
G TFAP2A transcription factor AP-2 alpha acts_upstream_of_or_within ISO (PMID:8622765) MGI PMID:8622765 NCBI chr 6:10,237,834...10,260,843 JBrowse link
G TGFBR1 transforming growth factor beta receptor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16845371) Ensembl
MGI		 PMID:16845371 GO_REF:0000107 NCBI chr 9:70,195,007...70,243,514
Ensembl chr 9:98,332,739...98,362,748 		JBrowse link
G TIPARP TCDD inducible poly(ADP-ribose) polymerase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17143286) Ensembl
MGI		 PMID:17143286 GO_REF:0000107 NCBI chr 3:153,730,307...153,762,442
Ensembl chr 3:161,783,999...161,816,525 		JBrowse link
G WDR48 WD repeat domain 48 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24001775) Ensembl
MGI		 PMID:24001775 GO_REF:0000107 NCBI chr 3:38,948,440...38,992,872
Ensembl chr 3:39,228,920...39,273,300 		JBrowse link
G WNT7A Wnt family member 7A acts_upstream_of_or_within ISO MGI MGI:48652 NCBI chr 3:13,733,487...13,797,189
Ensembl chr 3:14,077,839...14,138,386 		JBrowse link
G WWOX WW domain containing oxidoreductase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18487609) Ensembl
MGI		 PMID:18487609 GO_REF:0000107 NCBI chr16:58,689,609...59,800,333
Ensembl chr16:78,125,302...79,231,546 		JBrowse link
G ZFAND5 zinc finger AN1-type containing 5 acts_upstream_of_or_within ISO (PMID:17143286) MGI PMID:17143286 NCBI chr 9:52,446,788...52,457,527
Ensembl chr 9:71,144,900...71,154,869 		JBrowse link
bone morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACP5 acid phosphatase 5, tartrate resistant involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:8898228) Ensembl
MGI		 PMID:8898228 GO_REF:0000107 NCBI chr19:11,120,451...11,125,167
Ensembl chr19:11,832,575...11,835,203 		JBrowse link
G ACTN3 actinin alpha 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:61,905,722...61,922,227
Ensembl chr11:65,228,713...65,245,429 		JBrowse link
G ATG9A autophagy related 9A involved_in ISO (MGI:5906103|PMID:27811852) UniProt PMID:27811852 MGI:5906103 NCBI chr2B:106,477,007...106,487,249
Ensembl chr2B:225,067,590...225,078,065 		JBrowse link
G CDX1 caudal type homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11784046) Ensembl
MGI		 PMID:11784046 GO_REF:0000107 NCBI chr 5:145,591,186...145,608,976
Ensembl chr 5:151,592,139...151,614,257 		JBrowse link
G CHSY1 chondroitin sulfate synthase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22280990) Ensembl
MGI		 PMID:22280990 GO_REF:0000107 NCBI chr15:79,901,340...79,976,067
Ensembl chr15:99,186,705...99,260,591 		JBrowse link
G CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 acts_upstream_of_or_within ISO (PMID:20549734) MGI PMID:20549734 NCBI chr 6:137,134,142...137,136,550 JBrowse link
G COL9A1 collagen type IX alpha 1 chain acts_upstream_of_or_within ISO (PMID:18191556) MGI PMID:18191556 NCBI chr 6:68,051,446...68,138,715
Ensembl chr 6:71,349,471...71,436,370 		JBrowse link
G COMP cartilage oligomeric matrix protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18191556) Ensembl
MGI		 PMID:18191556 GO_REF:0000107 NCBI chr19:18,222,270...18,230,936
Ensembl chr19:19,229,562...19,238,008 		JBrowse link
G CST5 cystatin D involved_in ISO (PMID:16680148) MGI PMID:16680148 NCBI chr20:23,824,663...23,828,483
Ensembl chr20:24,178,197...24,182,016 		JBrowse link
G CYP26B1 cytochrome P450 family 26 subfamily B member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:72,172,658...72,191,410
Ensembl chr2A:73,670,830...73,686,433 		JBrowse link
G DHRS3 dehydrogenase/reductase 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:24005908) Ensembl
MGI		 PMID:24005908 GO_REF:0000107 NCBI chr 1:11,319,109...11,370,463
Ensembl chr 1:12,533,696...12,584,381 		JBrowse link
G DLX5 distal-less homeobox 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16330189) Ensembl
MGI		 PMID:16330189 GO_REF:0000107 NCBI chr 7:88,972,066...88,977,588
Ensembl chr 7:102,555,267...102,561,186 		JBrowse link
G EXT1 exostosin glycosyltransferase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20080592), (PMID:20404326) Ensembl
MGI		 PMID:20080592 PMID:20404326 GO_REF:0000107 NCBI chr 8:114,489,325...114,803,763
Ensembl chr 8:117,011,919...117,324,851 		JBrowse link
G FGFR2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO (PMID:10518547) MGI PMID:10518547 NCBI chr10:118,055,854...118,175,440
Ensembl chr10:121,469,735...121,588,815 		JBrowse link
G FGFR3 fibroblast growth factor receptor 3 involved_in
acts_upstream_of_or_within		 ISO (MGI:4457789|PMID:20582225)
(PMID:19407216)		 BHF-UCL
MGI		 PMID:19407216 PMID:20582225 MGI:4457789 NCBI chr 4:1,933,172...1,948,742
Ensembl chr 4:1,843,774...1,861,692 		JBrowse link
G GLG1 golgi glycoprotein 1 acts_upstream_of_or_within ISO (PMID:20530870) MGI PMID:20530870 NCBI chr16:55,014,892...55,172,877
Ensembl chr16:74,372,660...74,526,764 		JBrowse link
G HAS2 hyaluronan synthase 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21246657) Ensembl
MGI		 PMID:21246657 GO_REF:0000107 NCBI chr 8:118,313,186...118,342,160
Ensembl chr 8:121,072,154...121,089,365 		JBrowse link
G IFITM5 interferon induced transmembrane protein 5 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr11:294,184...295,525
Ensembl chr11:338,216...339,557
Ensembl chr11:338,216...339,557 		JBrowse link
G IFT80 intraflagellar transport 80 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21227999) Ensembl
MGI		 PMID:21227999 GO_REF:0000107 NCBI chr 3:157,279,076...157,421,478
Ensembl chr 3:165,329,056...165,454,905 		JBrowse link
G LOC100983183 low-density lipoprotein receptor-related protein 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr22:6,293,669...6,358,052
Ensembl chr22:23,957,773...23,994,087 		JBrowse link
G LOC103785234 hyaluronan synthase 2-like involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:121,341,839...121,344,439 JBrowse link
G LRP5 LDL receptor related protein 5 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr11:63,396,511...63,534,471
Ensembl chr11:66,735,246...66,839,817 		JBrowse link
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI MGI:61254 NCBI chr12:12,121,411...12,288,590
Ensembl chr12:12,508,108...12,657,973 		JBrowse link
G LTBP3 latent transforming growth factor beta binding protein 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11790802), (PMID:20530870) Ensembl
MGI		 PMID:11790802 PMID:20530870 GO_REF:0000107 NCBI chr11:60,897,897...60,917,690
Ensembl chr11:64,233,504...64,252,802 		JBrowse link
G LTF lactotransferrin involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:46,337,738...46,367,476
Ensembl chr 3:47,442,440...47,471,532 		JBrowse link
G MMP13 matrix metallopeptidase 13 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:97,890,811...97,902,778
Ensembl chr11:101,377,001...101,387,679 		JBrowse link
G MSX1 msh homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17693062)
(PMID:12489152), (PMID:16330189)		 Ensembl
MGI		 PMID:12489152 PMID:16330189 PMID:17693062 GO_REF:0000107 Ensembl chr 4:4,935,600...4,939,079 JBrowse link
G MSX2 msh homeobox 2 acts_upstream_of_or_within ISO (PMID:17693062) MGI PMID:17693062 NCBI chr 5:170,063,137...170,070,226
Ensembl chr 5:176,967,902...176,976,609 		JBrowse link
G OSR2 odd-skipped related transciption factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:95,590,753...95,598,491
Ensembl chr 8:97,768,980...97,776,669 		JBrowse link
G PAPPA2 pappalysin 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23457539) Ensembl
MGI		 PMID:23457539 GO_REF:0000107 NCBI chr 1:151,727,598...152,369,670
Ensembl chr 1:155,769,395...156,063,989 		JBrowse link
G PAX1 paired box 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:7607069) Ensembl
MGI		 PMID:7607069 GO_REF:0000107 NCBI chr20:21,663,155...21,676,880
Ensembl chr20:21,623,771...21,632,608 		JBrowse link
G RARG retinoic acid receptor gamma involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11784046)
(PMID:11784046), (PMID:8388780)		 Ensembl
MGI		 PMID:8388780 PMID:11784046 GO_REF:0000107 NCBI chr12:35,521,276...35,542,814
Ensembl chr12:36,303,359...36,325,111 		JBrowse link
G RIPPLY1 ripply transcriptional repressor 1 acts_upstream_of_or_within ISO (PMID:20346937) MGI PMID:20346937 NCBI chr  X:95,998,718...96,003,843
Ensembl chr  X:106,377,932...106,381,193 		JBrowse link
G RIPPLY2 ripply transcriptional repressor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20346937) Ensembl
MGI		 PMID:20346937 GO_REF:0000107 NCBI chr 6:81,748,370...81,754,129
Ensembl chr 6:85,022,737...85,027,930 		JBrowse link
G SFRP4 secreted frizzled related protein 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:38,542,105...38,553,008
Ensembl chr 7:38,764,146...38,774,264 		JBrowse link
G SKI SKI proto-oncogene acts_upstream_of_or_within ISO (PMID:9284043) MGI PMID:9284043 NCBI chr 1:944,428...1,029,695
Ensembl chr 1:2,091,620...2,174,080 		JBrowse link
G SP5 Sp5 transcription factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11071760) Ensembl
MGI		 PMID:11071760 GO_REF:0000107 NCBI chr2B:58,000,430...58,003,659 JBrowse link
G TBXT T-box transcription factor T involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11071760) Ensembl
MGI		 PMID:11071760 GO_REF:0000107 NCBI chr 6:164,112,117...164,122,253
Ensembl chr 6:169,095,723...169,106,595 		JBrowse link
G TFAP2A transcription factor AP-2 alpha involved_in ISO (MGI:80519|PMID:8622766) UniProt PMID:8622766 MGI:80519 NCBI chr 6:10,237,834...10,260,843 JBrowse link
bone trabecula formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COL1A1 collagen type I alpha 1 chain involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17440987) Ensembl
MGI		 PMID:17440987 GO_REF:0000107 NCBI chr17:44,274,349...44,291,764
Ensembl chr17:49,150,677...49,166,677 		JBrowse link
G ENPP1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO (PMID:22359666) MGI PMID:22359666 NCBI chr 6:129,591,858...129,673,000
Ensembl chr 6:133,698,640...133,783,644 		JBrowse link
G FBN2 fibrillin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:123,673,209...123,953,741
Ensembl chr 5:129,435,248...129,715,711 		JBrowse link
G MMP2 matrix metallopeptidase 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17440987) Ensembl
MGI		 PMID:17440987 GO_REF:0000107 NCBI chr16:35,711,866...35,738,881
Ensembl chr16:54,812,694...54,844,279 		JBrowse link
G MSX2 msh homeobox 2 acts_upstream_of_or_within ISO (PMID:10742104) MGI PMID:10742104 NCBI chr 5:170,063,137...170,070,226
Ensembl chr 5:176,967,902...176,976,609 		JBrowse link
G PPARGC1B PPARG coactivator 1 beta involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:145,154,517...145,315,567
Ensembl chr 5:151,203,088...151,278,837 		JBrowse link
G SFRP1 secreted frizzled related protein 1 acts_upstream_of_or_within ISO (PMID:14976225) MGI PMID:14976225 NCBI chr 8:40,507,027...40,555,053 JBrowse link
G THBS3 thrombospondin 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15964815) Ensembl
MGI		 PMID:15964815 GO_REF:0000107 NCBI chr 1:130,540,486...130,553,534
Ensembl chr 1:134,148,468...134,160,245 		JBrowse link
G VEGFA vascular endothelial growth factor A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22886301) Ensembl
MGI		 PMID:22886301 GO_REF:0000107 NCBI chr 6:43,361,053...43,377,366
Ensembl chr 6:44,650,365...44,666,353 		JBrowse link
G WNT10B Wnt family member 10B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15728361) Ensembl
MGI		 PMID:15728361 GO_REF:0000107 NCBI chr12:39,771,163...39,785,411
Ensembl chr12:40,659,106...40,665,734 		JBrowse link
cartilage condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACAN aggrecan involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:3070812) Ensembl
MGI		 PMID:3070812 GO_REF:0000107 NCBI chr15:67,492,494...67,563,265
Ensembl chr15:86,733,853...86,771,420 		JBrowse link
G BARX2 BARX homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15800003) Ensembl
MGI		 PMID:15800003 GO_REF:0000107 NCBI chr11:124,187,026...124,264,154
Ensembl chr11:128,086,409...128,162,833 		JBrowse link
G BMPR1B bone morphogenetic protein receptor type 1B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10631181) Ensembl
MGI		 PMID:10631181 GO_REF:0000107 NCBI chr 4:87,125,911...87,523,084
Ensembl chr 4:98,088,072...98,195,848 		JBrowse link
G CCN2 cellular communication network factor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15305294) Ensembl
MGI		 PMID:15305294 GO_REF:0000107 NCBI chr 6:129,729,572...129,733,113
Ensembl chr 6:133,836,319...133,842,077 		JBrowse link
G CHAD chondroadherin ISO RGD PMID:9461555 RGD:69806 NCBI chr17:44,558,931...44,565,450
Ensembl chr17:49,432,883...49,437,337 		JBrowse link
G COL11A1 collagen type XI alpha 1 chain involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:3070812) Ensembl
MGI		 PMID:3070812 GO_REF:0000107 NCBI chr 1:105,538,215...105,769,973
Ensembl chr 1:104,249,891...104,481,259 		JBrowse link
G COL2A1 collagen type II alpha 1 chain acts_upstream_of_or_within ISO (PMID:3070812) MGI PMID:3070812 NCBI chr12:40,726,137...40,757,690 JBrowse link
G FGF4 fibroblast growth factor 4 acts_upstream_of_or_within ISO (PMID:8565825) MGI PMID:8565825 NCBI chr11:64,866,649...64,871,031 JBrowse link
G FGF6 fibroblast growth factor 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:8565825) Ensembl
MGI		 PMID:8565825 GO_REF:0000107 NCBI chr12:4,543,776...4,555,352
Ensembl chr12:4,466,975...4,478,459 		JBrowse link
G LOC100972297 nuclear pore complex-interacting protein family member B6 acts_upstream_of_or_within ISO (PMID:11593033) MGI PMID:11593033 NCBI chr16:604,927...1,697,831 JBrowse link
G MAPK14 mitogen-activated protein kinase 14 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:35,586,847...35,683,041
Ensembl chr 6:36,788,233...36,871,114 		JBrowse link
G MYCN MYCN proto-oncogene, bHLH transcription factor acts_upstream_of_or_within ISO (PMID:17360777) MGI PMID:17360777 NCBI chr2A:15,925,130...15,931,605 JBrowse link
G MYF5 myogenic factor 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:8565825) Ensembl
MGI		 PMID:8565825 GO_REF:0000107 NCBI chr12:78,236,945...78,239,701
Ensembl chr12:81,347,324...81,350,389 		JBrowse link
G OTOR otoraplin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10998416) Ensembl
MGI
TreeGrafter		 PMID:10998416 GO_REF:0000107 GO_REF:0000118 NCBI chr20:16,708,799...16,712,906
Ensembl chr20:16,689,253...16,692,470 		JBrowse link
G ROR2 receptor tyrosine kinase like orphan receptor 2 acts_upstream_of_or_within ISO (PMID:14745966) MGI PMID:14745966 NCBI chr 9:62,782,183...63,005,626
Ensembl chr 9:90,851,983...90,965,084 		JBrowse link
G SOX5 SRY-box transcription factor 5 involved_in ISO (MGI:2446758|PMID:11702786), (MGI:3037234|PMID:14993235) UniProt PMID:11702786 PMID:14993235 MGI:2446758 MGI:3037234 NCBI chr12:62,361,631...62,780,805
Ensembl chr12:64,971,818...65,388,694 		JBrowse link
G SOX6 SRY-box transcription factor 6 involved_in ISO (MGI:2446758|PMID:11702786), (MGI:3037234|PMID:14993235) UniProt PMID:11702786 PMID:14993235 MGI:2446758 MGI:3037234 NCBI chr11:16,053,730...16,488,566
Ensembl chr11:15,747,495...16,175,246 		JBrowse link
G SOX9 SRY-box transcription factor 9 acts_upstream_of_or_within ISO (PMID:12414734)
(PMID:10319868)		 MGI PMID:10319868 PMID:12414734 NCBI chr17:66,028,737...66,034,122 JBrowse link
G TGFB2 transforming growth factor beta 2 acts_upstream_of_or_within ISO (PMID:8565825) MGI PMID:8565825 NCBI chr 1:193,907,398...194,005,800
Ensembl chr 1:198,758,751...198,859,041 		JBrowse link
G THRA thyroid hormone receptor alpha involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9250685) Ensembl
MGI		 PMID:9250685 GO_REF:0000107 NCBI chr17:17,196,459...17,226,263 JBrowse link
G UNCX UNC homeobox acts_upstream_of_or_within ISO (PMID:10804168)
(PMID:10804169)		 MGI PMID:10804168 PMID:10804169 NCBI chr 7:1,479,804...1,485,041 JBrowse link
G WNT7A Wnt family member 7A involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:13,733,487...13,797,189
Ensembl chr 3:14,077,839...14,138,386 		JBrowse link
cartilage development involved in endochondral bone morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CBS cystathionine beta-synthase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15622513) Ensembl
MGI		 PMID:15622513 GO_REF:0000107 NCBI chr21:29,361,519...29,385,610
Ensembl chr21:42,670,530...42,690,932 		JBrowse link
G COL1A1 collagen type I alpha 1 chain involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18248096) Ensembl
MGI		 PMID:18248096 GO_REF:0000107 NCBI chr17:44,274,349...44,291,764
Ensembl chr17:49,150,677...49,166,677 		JBrowse link
G COL2A1 collagen type II alpha 1 chain acts_upstream_of_or_within ISO mandibular condylar cartilage
(PMID:9022054)
(PMID:8989518)
(PMID:11680679)		 RGD
MGI		 PMID:8989518 PMID:9022054 PMID:11680679 PMID:12924823 RGD:8661659 NCBI chr12:40,726,137...40,757,690 JBrowse link
G EXT1 exostosin glycosyltransferase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21185280), (PMID:23958822) Ensembl
MGI		 PMID:21185280 PMID:23958822 GO_REF:0000107 NCBI chr 8:114,489,325...114,803,763
Ensembl chr 8:117,011,919...117,324,851 		JBrowse link
G GHR growth hormone receptor ISO RGD PMID:15749813 RGD:2307373 NCBI chr 5:67,654,326...67,953,140
Ensembl chr 5:72,700,150...72,871,278 		JBrowse link
G HOXA11 homeobox A11 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:14668414) Ensembl
MGI		 PMID:14668414 GO_REF:0000107 NCBI chr 7:27,826,003...27,829,757
Ensembl chr 7:27,424,759...27,429,103 		JBrowse link
G HOXD11 homeobox D11 acts_upstream_of_or_within ISO (PMID:14668414) MGI PMID:14668414 NCBI chr2B:63,386,806...63,398,777 JBrowse link
G HSPG2 heparan sulfate proteoglycan 2 acts_upstream_of_or_within ISO (PMID:10545953) MGI PMID:10545953 NCBI chr 1:21,014,951...21,129,937
Ensembl chr 1:21,979,504...22,053,400 		JBrowse link
G SHOX2 SHOX homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16537395) Ensembl
MGI		 PMID:16537395 GO_REF:0000107 NCBI chr 3:155,138,969...155,149,619
Ensembl chr 3:163,190,284...163,199,239 		JBrowse link
G SIK3 SIK family kinase 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22318228) Ensembl
MGI		 PMID:22318228 GO_REF:0000107 NCBI chr11:111,680,884...111,932,424
Ensembl chr11:115,613,478...115,730,158 		JBrowse link
G TRPV4 transient receptor potential cation channel subfamily V member 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:107,359,005...107,409,359
Ensembl chr12:110,754,238...110,786,182 		JBrowse link
chondrocyte development involved in endochondral bone morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SERPINH1 serpin family H member 1 acts_upstream_of_or_within ISO (PMID:22492985) MGI PMID:22492985 NCBI chr11:70,621,893...70,632,570 JBrowse link
G SMPD3 sphingomyelin phosphodiesterase 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21788370) Ensembl
MGI		 PMID:21788370 GO_REF:0000107 NCBI chr16:48,734,664...48,825,241
Ensembl chr16:68,131,905...68,142,871 		JBrowse link
chondrocyte differentiation involved in endochondral bone morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AXIN2 axin 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19623616) Ensembl
MGI		 PMID:19623616 GO_REF:0000107 NCBI chr17:59,476,336...59,509,358
Ensembl chr17:64,688,416...64,720,086 		JBrowse link
G IHH Indian hedgehog signaling molecule involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25639508) Ensembl
MGI		 PMID:25639508 GO_REF:0000107 NCBI chr2B:106,312,472...106,319,124
Ensembl chr2B:224,906,271...224,911,506 		JBrowse link
G SCUBE2 signal peptide, CUB domain and EGF like domain containing 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:25639508) Ensembl
MGI		 PMID:25639508 GO_REF:0000107 NCBI chr11:9,146,533...9,219,816
Ensembl chr11:8,888,668...8,959,677 		JBrowse link
G SOX9 SRY-box transcription factor 9 involved_in ISO (PMID:20676705) UniProt PMID:20676705 NCBI chr17:66,028,737...66,034,122 JBrowse link
G TRIP11 thyroid hormone receptor interactor 11 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20089971) Ensembl
MGI		 PMID:20089971 GO_REF:0000107 NCBI chr14:72,601,649...72,675,784
Ensembl chr14:91,945,392...92,019,231 		JBrowse link
coronal suture morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FGFR2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO (PMID:19389359) MGI PMID:19389359 NCBI chr10:118,055,854...118,175,440
Ensembl chr10:121,469,735...121,588,815 		JBrowse link
cranial suture morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9477322) Ensembl
MGI		 PMID:9477322 GO_REF:0000107 NCBI chr14:34,542,132...34,549,286
Ensembl chr14:52,821,872...52,828,752 		JBrowse link
G FGF4 fibroblast growth factor 4 acts_upstream_of_or_within ISO (PMID:9477322) MGI PMID:9477322 NCBI chr11:64,866,649...64,871,031 JBrowse link
G IGF1 insulin like growth factor 1 ISO RGD PMID:10597685 RGD:12910129 NCBI chr12:99,986,887...100,066,773
Ensembl chr12:103,385,911...103,462,177 		JBrowse link
G INSIG1 insulin induced gene 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16955138) Ensembl
MGI		 PMID:16955138 GO_REF:0000107 NCBI chr 7:146,893,730...146,906,329
Ensembl chr 7:158,619,531...158,632,012 		JBrowse link
G INSIG2 insulin induced gene 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16955138) Ensembl
MGI		 PMID:16955138 GO_REF:0000107 NCBI chr2B:5,046,971...5,068,757
Ensembl chr2B:118,632,402...118,652,647 		JBrowse link
G TWIST1 twist family bHLH transcription factor 1 involved_in
acts_upstream_of_or_within		 ISO (MGI:3623529|PMID:16502419)
(PMID:15030764)
(PMID:12221714)		 UniProt
MGI		 PMID:12221714 PMID:15030764 PMID:16502419 MGI:3623529 NCBI chr 7:19,761,041...19,765,665 JBrowse link
craniofacial suture morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DCANP1 dendritic cell associated nuclear protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:130,838,844...130,839,588
Ensembl chr 5:136,979,950...136,980,694 		JBrowse link
G FOXN3 forkhead box N3 acts_upstream_of_or_within ISO (PMID:20691664) MGI PMID:20691664 NCBI chr14:69,778,191...70,238,813
Ensembl chr14:89,140,892...89,387,807 		JBrowse link
G FREM1 FRAS1 related extracellular matrix 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:14,567,781...14,748,474
Ensembl chr 9:15,081,208...15,253,399 		JBrowse link
G MEGF8 multiple EGF like domains 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:39,213,339...39,265,391
Ensembl chr19:47,805,307...47,858,636 		JBrowse link
G MMP14 matrix metallopeptidase 14 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18022611) Ensembl
MGI		 PMID:18022611 GO_REF:0000107 NCBI chr14:3,654,125...3,665,158
Ensembl chr14:21,753,305...21,764,058 		JBrowse link
G MMP16 matrix metallopeptidase 16 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18022611) Ensembl
MGI		 PMID:18022611 GO_REF:0000107 NCBI chr 8:84,736,752...85,026,711
Ensembl chr 8:86,701,882...86,982,518 		JBrowse link
G NEUROG1 neurogenin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:130,922,727...130,924,403
Ensembl chr 5:137,064,339...137,065,052 		JBrowse link
G RAB23 RAB23, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:56,744,948...56,780,187
Ensembl chr 6:58,375,559...58,411,107 		JBrowse link
G TIFAB TIFA inhibitor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:130,836,697...130,846,050
Ensembl chr 5:136,983,040...136,983,525 		JBrowse link
G TMEM107 transmembrane protein 107 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:28954202) Ensembl
MGI		 PMID:28954202 GO_REF:0000107 NCBI chr17:43,481,043...43,485,189
Ensembl chr17:48,214,392...48,217,773 		JBrowse link
embryonic cranial skeleton morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9268572) Ensembl
MGI		 PMID:9268572 GO_REF:0000107 NCBI chr14:34,542,132...34,549,286
Ensembl chr14:52,821,872...52,828,752 		JBrowse link
G DLX2 distal-less homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:7590232) Ensembl
MGI		 PMID:7590232 GO_REF:0000107 NCBI chr2B:59,396,841...59,400,297
Ensembl chr2B:176,853,913...176,857,079 		JBrowse link
G FGFR2 fibroblast growth factor receptor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:118,055,854...118,175,440
Ensembl chr10:121,469,735...121,588,815 		JBrowse link
G FOXC2 forkhead box C2 acts_upstream_of_or_within ISO (PMID:9106663) MGI PMID:9106663 NCBI chr16:67,237,476...67,239,545 JBrowse link
G GAS1 growth arrest specific 1 acts_upstream_of_or_within ISO (PMID:17525797) MGI PMID:17525797 NCBI chr 9:58,079,700...58,082,849
Ensembl chr 9:86,139,009...86,140,045 		JBrowse link
G GNAS GNAS complex locus acts_upstream_of_or_within ISO (PMID:15797856) MGI PMID:15797856 NCBI chr20:55,190,607...55,262,245 JBrowse link
G GRHL2 grainyhead like transcription factor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21377456) Ensembl
MGI		 PMID:21377456 GO_REF:0000107 NCBI chr 8:98,129,147...98,308,120
Ensembl chr 8:100,308,575...100,471,830 		JBrowse link
G IFT140 intraflagellar transport 140 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23469164) Ensembl
MGI		 PMID:23469164 GO_REF:0000107 NCBI chr16:130,150...232,369
Ensembl chr16:1,566,824...1,658,884 		JBrowse link
G IRX5 iroquois homeobox 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:35,164,884...35,168,189
Ensembl chr16:54,272,412...54,275,124 		JBrowse link
G LOC100978090 protein ALEX involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:55,204,188...55,206,608
Ensembl chr20:56,474,459...56,621,747 		JBrowse link
G LOC100981746 homeobox protein SIX4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20515681) Ensembl
MGI		 PMID:20515681 GO_REF:0000107 NCBI chr14:41,316,169...41,332,160
Ensembl chr14:59,580,587...59,594,014 		JBrowse link
G LOC100988043 eukaryotic initiation factor 4A-III involved_in ISO (PMID:24360810) UniProt PMID:24360810 NCBI chr17:74,221,793...74,233,738 JBrowse link
G MMP14 matrix metallopeptidase 14 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18022611) Ensembl
MGI		 PMID:18022611 GO_REF:0000107 NCBI chr14:3,654,125...3,665,158
Ensembl chr14:21,753,305...21,764,058 		JBrowse link
G MMP16 matrix metallopeptidase 16 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18022611) Ensembl
MGI		 PMID:18022611 GO_REF:0000107 NCBI chr 8:84,736,752...85,026,711
Ensembl chr 8:86,701,882...86,982,518 		JBrowse link
G NIPBL NIPBL cohesin loading factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19763162) Ensembl
MGI		 PMID:19763162 GO_REF:0000107 NCBI chr 5:73,306,527...73,491,367
Ensembl chr 5:78,585,649...78,698,184 		JBrowse link
G NODAL nodal growth differentiation factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11311163) Ensembl
MGI		 PMID:11311163 GO_REF:0000107 NCBI chr10:66,906,866...66,916,938
Ensembl chr10:69,433,959...69,443,972 		JBrowse link
G PAX5 paired box 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23349049) Ensembl
MGI		 PMID:23349049 GO_REF:0000107 NCBI chr 9:36,677,369...36,876,678
Ensembl chr 9:37,474,267...37,673,684 		JBrowse link
G PDGFRA platelet derived growth factor receptor alpha involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 4:69,639,081...69,709,870
Ensembl chr 4:76,199,382...76,271,097 		JBrowse link
G PRRX1 paired related homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9729491)
(PMID:7758948)		 Ensembl
MGI		 PMID:7758948 PMID:9729491 GO_REF:0000107 NCBI chr 1:146,151,633...146,227,926
Ensembl chr 1:149,867,634...149,943,810 		JBrowse link
G PRRX2 paired related homeobox 2 acts_upstream_of_or_within ISO (PMID:9729491) MGI PMID:9729491 NCBI chr 9:100,792,324...100,849,923 JBrowse link
G RUNX2 RUNX family transcription factor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15030764) Ensembl
MGI		 PMID:15030764 GO_REF:0000107 NCBI chr 6:45,003,962...45,133,148
Ensembl chr 6:46,189,432...46,524,389 		JBrowse link
G SETD2 SET domain containing 2, histone lysine methyltransferase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20133625) Ensembl
MGI		 PMID:20133625 GO_REF:0000107 NCBI chr 3:46,916,615...47,064,046
Ensembl chr 3:48,018,517...48,163,999 		JBrowse link
G SIX1 SIX homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20515681) Ensembl
MGI		 PMID:20515681 GO_REF:0000107 NCBI chr14:41,250,512...41,256,567
Ensembl chr14:59,515,324...59,527,494 		JBrowse link
G SIX2 SIX homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20515681) Ensembl
MGI		 PMID:20515681 GO_REF:0000107 NCBI chr2A:45,109,414...45,113,887
Ensembl chr2A:46,039,582...46,044,035 		JBrowse link
G SLC39A1 solute carrier family 39 member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:129,304,237...129,315,484
Ensembl chr 1:132,944,346...132,952,951
Ensembl chr 1:132,944,346...132,952,951 		JBrowse link
G SLC39A3 solute carrier family 39 member 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16652366) Ensembl
MGI		 PMID:16652366 GO_REF:0000107 NCBI chr19:1,756,535...1,764,099
Ensembl chr19:2,714,852...2,722,654 		JBrowse link
G SMAD2 SMAD family member 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15183723) Ensembl
MGI		 PMID:15183723 GO_REF:0000107 NCBI chr18:41,213,001...41,309,902
Ensembl chr18:44,580,905...44,668,530 		JBrowse link
G SMAD3 SMAD family member 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15183723) Ensembl
MGI		 PMID:15183723 GO_REF:0000107 NCBI chr15:46,013,764...46,143,126
Ensembl chr15:64,284,949...64,414,185 		JBrowse link
G TBX1 T-box transcription factor 1 acts_upstream_of_or_within ISO (PMID:15190012) MGI PMID:15190012 NCBI chr22:2,521,080...2,541,267 JBrowse link
G TBX15 T-box transcription factor 15 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15728667) Ensembl
MGI		 PMID:15728667 GO_REF:0000107 NCBI chr 1:83,556,763...83,663,453
Ensembl chr 1:118,553,638...118,659,379 		JBrowse link
G TFAP2A transcription factor AP-2 alpha involved_in
acts_upstream_of_or_within		 ISO (MGI:80519|PMID:8622766)
(PMID:8622765)		 UniProt
MGI		 PMID:8622765 PMID:8622766 MGI:80519 NCBI chr 6:10,237,834...10,260,843 JBrowse link
G TGFBR1 transforming growth factor beta receptor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16806156) Ensembl
MGI		 PMID:16806156 GO_REF:0000107 NCBI chr 9:70,195,007...70,243,514
Ensembl chr 9:98,332,739...98,362,748 		JBrowse link
G TGFBR2 transforming growth factor beta receptor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:30,536,187...30,623,653
Ensembl chr 3:30,854,460...30,938,856 		JBrowse link
G TWIST1 twist family bHLH transcription factor 1 involved_in
acts_upstream_of_or_within		 ISO (PMID:8988166), (PMID:8988167)
(PMID:15030764)
(MGI:1100098|PMID:8988167)		 BHF-UCL
MGI		 PMID:8988166 PMID:8988167 PMID:15030764 MGI:1100098 NCBI chr 7:19,761,041...19,765,665 JBrowse link
G TWIST2 twist family bHLH transcription factor 2 acts_upstream_of_or_within ISO (PMID:15030764) MGI PMID:15030764 NCBI chr2B:126,080,684...126,143,677 JBrowse link
G WDR19 WD repeat domain 19 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22228095) Ensembl
MGI		 PMID:22228095 GO_REF:0000107 NCBI chr 4:33,511,283...33,616,946
Ensembl chr 4:39,365,276...39,462,903 		JBrowse link
G WNT9B Wnt family member 9B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16998816)
(PMID:16054034)		 Ensembl
MGI		 PMID:16054034 PMID:16998816 GO_REF:0000107 NCBI chr17:10,616,957...10,651,954 JBrowse link
embryonic neurocranium morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FGF8 fibroblast growth factor 8 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27395007) Ensembl
MGI		 PMID:27395007 GO_REF:0000107 NCBI chr10:98,372,251...98,378,811
Ensembl chr10:101,844,792...101,853,916 		JBrowse link
G FUZ fuzzy planar cell polarity protein acts_upstream_of_or_within ISO (PMID:27395007) MGI PMID:27395007 NCBI chr19:46,819,833...46,826,235
Ensembl chr19:55,736,325...55,742,589 		JBrowse link
G GLI3 GLI family zinc finger 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27395007) Ensembl
MGI		 PMID:27395007 GO_REF:0000107 NCBI chr 7:42,004,965...42,280,772
Ensembl chr 7:42,056,565...42,322,865 		JBrowse link
G HOXA1 homeobox A1 involved_in ISO (PMID:16155570) DFLAT PMID:16155570 NCBI chr 7:27,737,432...27,740,442
Ensembl chr 7:27,335,710...27,339,747 		JBrowse link
G MED12 mediator complex subunit 12 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20589884) Ensembl
MGI		 PMID:20589884 GO_REF:0000107 NCBI chr  X:60,386,820...60,410,730
Ensembl chr  X:70,443,667...70,466,942 		JBrowse link
G MTHFD1L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:148,679,587...148,919,002
Ensembl chr 6:153,390,498...153,619,884 		JBrowse link
G NDST1 N-deacetylase and N-sulfotransferase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16020517) Ensembl
MGI		 PMID:16020517 GO_REF:0000107 NCBI chr 5:145,910,993...145,982,933
Ensembl chr 5:151,936,357...151,986,668 		JBrowse link
G TGFB2 transforming growth factor beta 2 ISO RGD PMID:11002343 RGD:1579866 NCBI chr 1:193,907,398...194,005,800
Ensembl chr 1:198,758,751...198,859,041 		JBrowse link
G TGFB3 transforming growth factor beta 3 ISO RGD PMID:11002343 RGD:1579866 NCBI chr14:56,516,697...56,542,097
Ensembl chr14:75,359,505...75,382,412 		JBrowse link
G TULP3 TUB like protein 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19286674) Ensembl
MGI		 PMID:19286674 GO_REF:0000107 NCBI chr12:3,012,890...3,061,831
Ensembl chr12:2,944,769...2,993,278 		JBrowse link
embryonic skeletal joint morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AXIN1 axin 1 acts_upstream_of_or_within ISO MGI MGI:48782 Ensembl chr16:278,239...337,891 JBrowse link
G BMP4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9664686) Ensembl
MGI		 PMID:9664686 GO_REF:0000107 NCBI chr14:34,542,132...34,549,286
Ensembl chr14:52,821,872...52,828,752 		JBrowse link
G BMP7 bone morphogenetic protein 7 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9664686) Ensembl
MGI		 PMID:9664686 GO_REF:0000107 NCBI chr20:53,509,484...53,606,889
Ensembl chr20:54,788,974...54,885,021 		JBrowse link
G COL2A1 collagen type II alpha 1 chain involved_in ISO (PMID:16752401) BHF-UCL PMID:16752401 NCBI chr12:40,726,137...40,757,690 JBrowse link
G HOXA11 homeobox A11 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20978074) Ensembl
MGI		 PMID:20978074 GO_REF:0000107 NCBI chr 7:27,826,003...27,829,757
Ensembl chr 7:27,424,759...27,429,103 		JBrowse link
G HOXC11 homeobox C11 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20978074) Ensembl
MGI		 PMID:20978074 GO_REF:0000107 NCBI chr12:34,777,790...34,782,104
Ensembl chr12:35,567,093...35,570,396 		JBrowse link
G HOXD11 homeobox D11 acts_upstream_of_or_within ISO (PMID:20978074) MGI PMID:20978074 NCBI chr2B:63,386,806...63,398,777 JBrowse link
G HYAL1 hyaluronidase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18772348) Ensembl
MGI		 PMID:18772348 GO_REF:0000107 NCBI chr 3:50,228,491...50,238,798
Ensembl chr 3:51,463,239...51,467,286 		JBrowse link
G NOG noggin involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:50,669,186...50,671,081
Ensembl chr17:55,532,394...55,533,092 		JBrowse link
G OSR1 odd-skipped related transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:19,333,101...19,340,267
Ensembl chr2A:19,451,067...19,458,229 		JBrowse link
G OSR2 odd-skipped related transciption factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:95,590,753...95,598,491
Ensembl chr 8:97,768,980...97,776,669 		JBrowse link
G SHOX2 SHOX homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18514492) Ensembl
MGI		 PMID:18514492 GO_REF:0000107 NCBI chr 3:155,138,969...155,149,619
Ensembl chr 3:163,190,284...163,199,239 		JBrowse link
embryonic skeletal limb joint morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTNNB1 catenin beta 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:41,104,940...41,145,934
Ensembl chr 3:41,373,726...41,414,030 		JBrowse link
G OSR1 odd-skipped related transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2A:19,333,101...19,340,267
Ensembl chr2A:19,451,067...19,458,229 		JBrowse link
G OSR2 odd-skipped related transciption factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:95,590,753...95,598,491
Ensembl chr 8:97,768,980...97,776,669 		JBrowse link
embryonic skeletal system morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALX1 ALX homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15728667), (PMID:9847249) TreeGrafter
MGI		 PMID:9847249 PMID:15728667 GO_REF:0000118 NCBI chr12:82,800,273...82,822,031
Ensembl chr12:85,902,113...85,923,774 		JBrowse link
G ALX3 ALX homeobox 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11641221), (PMID:15728667) Ensembl
MGI		 PMID:11641221 PMID:15728667 GO_REF:0000107 NCBI chr 1:112,706,782...112,717,635
Ensembl chr 1:127,624,197...127,634,004 		JBrowse link
G ALX4 ALX homeobox 4 acts_upstream_of_or_within ISO (PMID:15728667)
(PMID:11641221)
(PMID:9847249)		 MGI PMID:9847249 PMID:11641221 PMID:15728667 NCBI chr11:44,219,865...44,269,597 JBrowse link
G ASXL2 ASXL transcriptional regulator 2 acts_upstream_of_or_within ISO (PMID:19270745) MGI PMID:19270745 NCBI chr2A:25,730,155...25,880,089
Ensembl chr2A:25,832,527...25,973,659 		JBrowse link
G BMI1 BMI1 proto-oncogene, polycomb ring finger involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11290297) Ensembl
MGI		 PMID:11290297 GO_REF:0000107 NCBI chr10:22,477,755...22,487,894
Ensembl chr10:22,857,776...22,863,479 		JBrowse link
G BMP4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16712836) Ensembl
MGI		 PMID:16712836 GO_REF:0000107 NCBI chr14:34,542,132...34,549,286
Ensembl chr14:52,821,872...52,828,752 		JBrowse link
G CHST11 carbohydrate sulfotransferase 11 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16079159) Ensembl
MGI		 PMID:16079159 GO_REF:0000107 NCBI chr12:102,035,480...102,340,084
Ensembl chr12:105,431,075...105,731,172 		JBrowse link
G COL11A1 collagen type XI alpha 1 chain involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:4100752) Ensembl
MGI		 PMID:4100752 GO_REF:0000107 NCBI chr 1:105,538,215...105,769,973
Ensembl chr 1:104,249,891...104,481,259 		JBrowse link
G DLG1 discs large MAGUK scaffold protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11238884) Ensembl
MGI		 PMID:11238884 GO_REF:0000107 NCBI chr 3:194,386,263...194,648,015
Ensembl chr 3:204,323,724...204,584,987 		JBrowse link
G DSCAML1 DS cell adhesion molecule like 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:112,263,509...112,632,332
Ensembl chr11:116,196,677...116,302,262 		JBrowse link
G DYNC2I1 dynein 2 intermediate chain 1 involved_in IEA Ensembl GO_REF:0000107 Ensembl chr 7:162,140,534...162,218,224 JBrowse link
G EYA1 EYA transcriptional coactivator and phosphatase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10471511) Ensembl
MGI		 PMID:10471511 GO_REF:0000107 NCBI chr 8:67,728,057...68,060,069
Ensembl chr 8:69,387,769...69,551,829 		JBrowse link
G FLVCR1 FLVCR choline and heme transporter 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23187127) Ensembl
MGI		 PMID:23187127 GO_REF:0000107 NCBI chr 1:188,425,697...188,466,721
Ensembl chr 1:193,284,158...193,320,554 		JBrowse link
G FOXC2 forkhead box C2 acts_upstream_of_or_within ISO (PMID:9409679) MGI PMID:9409679 NCBI chr16:67,237,476...67,239,545 JBrowse link
G FUZ fuzzy planar cell polarity protein involved_in ISO (MGI:4438317|PMID:19767740), (MGI:5296432|PMID:21935430), (MGI:5498583|PMID:23806618) UniProt PMID:19767740 PMID:21935430 PMID:23806618 MGI:4438317 MGI:5296432 MGI:5498583 NCBI chr19:46,819,833...46,826,235
Ensembl chr19:55,736,325...55,742,589 		JBrowse link
G GLI3 GLI family zinc finger 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15728667) Ensembl
MGI		 PMID:15728667 GO_REF:0000107 NCBI chr 7:42,004,965...42,280,772
Ensembl chr 7:42,056,565...42,322,865 		JBrowse link
G GSC goosecoid homeobox acts_upstream_of_or_within ISO (PMID:7555718)
(PMID:7555726)		 MGI PMID:7555718 PMID:7555726 NCBI chr14:75,390,119...75,392,050
Ensembl chr14:94,718,269...94,720,404 		JBrowse link
G HOXA2 homeobox A2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15634706) Ensembl
MGI		 PMID:15634706 GO_REF:0000107 NCBI chr 7:27,745,138...27,747,129
Ensembl chr 7:27,344,469...27,346,789 		JBrowse link
G HOXA3 homeobox A3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9441667) Ensembl
MGI
TreeGrafter		 PMID:9441667 GO_REF:0000107 GO_REF:0000118 NCBI chr 7:27,750,642...27,767,125
Ensembl chr 7:27,350,491...27,371,169 		JBrowse link
G HOXA4 homeobox A4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:7628700)
(PMID:7918106)		 TreeGrafter
MGI		 PMID:7628700 PMID:7918106 GO_REF:0000118 NCBI chr 7:27,773,001...27,775,284 JBrowse link
G HOXA5 homeobox A5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:7901120), (PMID:9603431)
(PMID:17417799)		 Ensembl
MGI		 PMID:7901120 PMID:9603431 PMID:17417799 GO_REF:0000107 NCBI chr 7:27,786,040...27,789,339
Ensembl chr 7:27,385,175...27,388,990 		JBrowse link
G HOXA7 homeobox A7 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9784603) Ensembl
MGI		 PMID:9784603 GO_REF:0000107 NCBI chr 7:27,799,317...27,802,492
Ensembl chr 7:27,396,898...27,402,142 		JBrowse link
G HOXA9 homeobox A9 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 7:27,806,942...27,810,304
Ensembl chr 7:27,405,931...27,409,984 		JBrowse link
G HOXB1 homeobox B1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10885747) Ensembl
MGI		 PMID:10885747 GO_REF:0000107 NCBI chr17:9,005,745...9,008,230
Ensembl chr17:9,190,137...9,191,696 		JBrowse link
G HOXB2 homeobox B2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10885747) Ensembl
MGI		 PMID:10885747 GO_REF:0000107 NCBI chr17:8,991,652...8,994,092
Ensembl chr17:9,176,313...9,178,713 		JBrowse link
G HOXB3 homeobox B3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10885747)
(PMID:9441667)		 Ensembl
MGI
TreeGrafter		 PMID:9441667 PMID:10885747 GO_REF:0000107 GO_REF:0000118 NCBI chr17:8,946,441...8,987,876
Ensembl chr17:9,147,784...9,171,021 		JBrowse link
G HOXB4 homeobox B4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:7628700)
(PMID:10885747)		 Ensembl
MGI
TreeGrafter		 PMID:7628700 PMID:10885747 GO_REF:0000107 GO_REF:0000118 NCBI chr17:8,958,253...8,961,261
Ensembl chr17:9,143,173...9,146,161 		JBrowse link
G HOXB5 homeobox B5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:7828847)
(PMID:10885747)		 Ensembl
MGI		 PMID:7828847 PMID:10885747 GO_REF:0000107 NCBI chr17:8,941,990...8,945,512
Ensembl chr17:9,127,630...9,130,616 		JBrowse link
G HOXB6 homeobox B6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10885747) Ensembl
MGI		 PMID:10885747 GO_REF:0000107 NCBI chr17:8,931,773...8,941,024
Ensembl chr17:9,116,886...9,126,150 		JBrowse link
G HOXB7 homeobox B7 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9784603)
(PMID:10885747)		 Ensembl
MGI		 PMID:9784603 PMID:10885747 GO_REF:0000107 NCBI chr17:8,925,717...8,929,523
Ensembl chr17:9,110,864...9,114,639 		JBrowse link
G HOXB8 homeobox B8 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10885747)
(PMID:10559485)		 Ensembl
MGI		 PMID:10559485 PMID:10885747 GO_REF:0000107 NCBI chr17:8,920,986...8,924,649
Ensembl chr17:9,106,662...9,109,540 		JBrowse link
G HOXB9 homeobox B9 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr17:8,910,421...8,916,128
Ensembl chr17:9,095,438...9,100,747 		JBrowse link
G HOXC4 homeobox C4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr12:34,699,357...34,702,368
Ensembl chr12:35,487,619...35,526,627 		JBrowse link
G HOXC9 homeobox C9 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:7547473) Ensembl
MGI
TreeGrafter		 PMID:7547473 GO_REF:0000107 GO_REF:0000118 NCBI chr12:34,751,922...34,755,157
Ensembl chr12:35,540,234...35,543,486 		JBrowse link
G HOXD10 homeobox D10 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10642795) Ensembl
MGI		 PMID:10642795 GO_REF:0000107 NCBI chr2B:63,395,636...63,399,704
Ensembl chr2B:181,104,876...181,110,963 		JBrowse link
G HOXD3 homeobox D3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:7913519)
(PMID:7910549), (PMID:7913519)		 Ensembl
MGI
TreeGrafter		 PMID:7910549 PMID:7913519 GO_REF:0000107 GO_REF:0000118 NCBI chr2B:63,432,720...63,452,816
Ensembl chr2B:181,141,538...181,161,604 		JBrowse link
G HOXD4 homeobox D4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:7628700)
(PMID:7750651)		 TreeGrafter
MGI		 PMID:7628700 PMID:7750651 GO_REF:0000118 NCBI chr2B:63,429,084...63,432,972
Ensembl chr2B:181,140,175...181,141,484 		JBrowse link
G HOXD9 homeobox D9 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10642795) Ensembl
MGI
TreeGrafter		 PMID:10642795 GO_REF:0000107 GO_REF:0000118 NCBI chr2B:63,401,813...63,404,731
Ensembl chr2B:181,112,002...181,113,415 		JBrowse link
G HSPG2 heparan sulfate proteoglycan 2 acts_upstream_of_or_within ISO (PMID:10579729) MGI PMID:10579729 NCBI chr 1:21,014,951...21,129,937
Ensembl chr 1:21,979,504...22,053,400 		JBrowse link
G LOC100981746 homeobox protein SIX4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15788460) Ensembl
MGI		 PMID:15788460 GO_REF:0000107 NCBI chr14:41,316,169...41,332,160
Ensembl chr14:59,580,587...59,594,014 		JBrowse link
G MDFI MyoD family inhibitor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9799236) Ensembl
MGI		 PMID:9799236 GO_REF:0000107 NCBI chr 6:41,222,123...41,239,474
Ensembl chr 6:42,527,805...42,545,030 		JBrowse link
G MEF2C myocyte enhancer factor 2C acts_upstream_of_or_within ISO (PMID:17420000) MGI PMID:17420000 NCBI chr 5:26,480,489...26,650,813
Ensembl chr 5:26,681,700...26,786,426 		JBrowse link
G MEGF8 multiple EGF like domains 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:39,213,339...39,265,391
Ensembl chr19:47,805,307...47,858,636 		JBrowse link
G MEN1 menin 1 acts_upstream_of_or_within ISO (PMID:17927973) MGI PMID:17927973 NCBI chr11:60,159,009...60,166,222
Ensembl chr11:63,499,962...63,507,164 		JBrowse link
G MYCN MYCN proto-oncogene, bHLH transcription factor acts_upstream_of_or_within ISO (PMID:17360777) MGI PMID:17360777 NCBI chr2A:15,925,130...15,931,605 JBrowse link
G MYF5 myogenic factor 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10929709) Ensembl
MGI		 PMID:10929709 GO_REF:0000107 NCBI chr12:78,236,945...78,239,701
Ensembl chr12:81,347,324...81,350,389 		JBrowse link
G OSR2 odd-skipped related transciption factor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15175245) Ensembl
MGI		 PMID:15175245 GO_REF:0000107 NCBI chr 8:95,590,753...95,598,491
Ensembl chr 8:97,768,980...97,776,669 		JBrowse link
G PCGF2 polycomb group ring finger 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11290297) Ensembl
MGI		 PMID:11290297 GO_REF:0000107 NCBI chr17:18,523,859...18,539,794
Ensembl chr17:18,798,917...18,814,838 		JBrowse link
G PRRX1 paired related homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11532916), (PMID:9729491), (PMID:9876178)
(PMID:7758948)		 Ensembl
MGI		 PMID:7758948 PMID:9729491 PMID:9876178 PMID:11532916 GO_REF:0000107 NCBI chr 1:146,151,633...146,227,926
Ensembl chr 1:149,867,634...149,943,810 		JBrowse link
G PRRX2 paired related homeobox 2 acts_upstream_of_or_within ISO (PMID:11532916), (PMID:9729491), (PMID:9876178) MGI PMID:9729491 PMID:9876178 PMID:11532916 NCBI chr 9:100,792,324...100,849,923 JBrowse link
G SATB2 SATB homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16751105)
(PMID:16960803)		 Ensembl
MGI		 PMID:16751105 PMID:16960803 GO_REF:0000107 NCBI chr2B:86,518,043...86,720,212
Ensembl chr2B:204,406,887...204,599,539 		JBrowse link
G SIX1 SIX homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15788460) Ensembl
MGI		 PMID:15788460 GO_REF:0000107 NCBI chr14:41,250,512...41,256,567
Ensembl chr14:59,515,324...59,527,494 		JBrowse link
G SIX2 SIX homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15634706) Ensembl
MGI		 PMID:15634706 GO_REF:0000107 NCBI chr2A:45,109,414...45,113,887
Ensembl chr2A:46,039,582...46,044,035 		JBrowse link
G SOX11 SRY-box transcription factor 11 involved_in ISO (MGI:3052265|PMID:15254231) UniProt PMID:15254231 MGI:3052265 NCBI chr2A:5,699,738...5,711,210 JBrowse link
G TBX15 T-box transcription factor 15 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15728667) Ensembl
MGI		 PMID:15728667 GO_REF:0000107 NCBI chr 1:83,556,763...83,663,453
Ensembl chr 1:118,553,638...118,659,379 		JBrowse link
G TWIST1 twist family bHLH transcription factor 1 acts_upstream_of_or_within ISO (PMID:15030764) MGI PMID:15030764 NCBI chr 7:19,761,041...19,765,665 JBrowse link
G WNT9A Wnt family member 9A acts_upstream_of_or_within ISO (PMID:16818445) MGI PMID:16818445 NCBI chr 1:203,320,990...203,350,599
Ensembl chr 1:208,300,609...208,327,191 		JBrowse link
G ZEB1 zinc finger E-box binding homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9389660) Ensembl
MGI		 PMID:9389660 GO_REF:0000107 NCBI chr10:31,449,202...31,659,534
Ensembl chr10:32,046,491...32,253,550 		JBrowse link
embryonic viscerocranium morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHST11 carbohydrate sulfotransferase 11 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16079159) Ensembl
MGI		 PMID:16079159 GO_REF:0000107 NCBI chr12:102,035,480...102,340,084
Ensembl chr12:105,431,075...105,731,172 		JBrowse link
G FOXC2 forkhead box C2 acts_upstream_of_or_within ISO (PMID:9409679) MGI PMID:9409679 NCBI chr16:67,237,476...67,239,545 JBrowse link
G HOXA2 homeobox A2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16221728) Ensembl
MGI		 PMID:16221728 GO_REF:0000107 NCBI chr 7:27,745,138...27,747,129
Ensembl chr 7:27,344,469...27,346,789 		JBrowse link
G LHX1 LIM homeobox 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:20,134,308...20,140,652
Ensembl chr17:20,430,618...20,437,751 		JBrowse link
G MEF2C myocyte enhancer factor 2C acts_upstream_of_or_within ISO (PMID:17420000) MGI PMID:17420000 NCBI chr 5:26,480,489...26,650,813
Ensembl chr 5:26,681,700...26,786,426 		JBrowse link
G MTHFD1L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:148,679,587...148,919,002
Ensembl chr 6:153,390,498...153,619,884 		JBrowse link
G NDST1 N-deacetylase and N-sulfotransferase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16020517) Ensembl
MGI		 PMID:16020517 GO_REF:0000107 NCBI chr 5:145,910,993...145,982,933
Ensembl chr 5:151,936,357...151,986,668 		JBrowse link
G NIPBL NIPBL cohesin loading factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19763162) Ensembl
MGI
TreeGrafter		 PMID:19763162 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:73,306,527...73,491,367
Ensembl chr 5:78,585,649...78,698,184 		JBrowse link
G RDH10 retinol dehydrogenase 10 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17473173) Ensembl
MGI		 PMID:17473173 GO_REF:0000107 NCBI chr 8:69,833,320...69,863,536
Ensembl chr 8:71,481,089...71,510,689 		JBrowse link
G TBX1 T-box transcription factor 1 involved_in ISO (PMID:14585638) UniProt PMID:14585638 NCBI chr22:2,521,080...2,541,267 JBrowse link
endochondral bone morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACCS 1-aminocyclopropane-1-carboxylate synthase homolog (inactive) involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:44,026,501...44,044,928
Ensembl chr11:44,522,797...44,699,447 		JBrowse link
G CARM1 coactivator associated arginine methyltransferase 1 acts_upstream_of_or_within ISO (PMID:19725955) MGI PMID:19725955 NCBI chr19:10,424,993...10,476,702
Ensembl chr19:11,144,733...11,195,948 		JBrowse link
G COL3A1 collagen type III alpha 1 chain involved_in ISO (PMID:17960558) MGI PMID:17960558 NCBI chr2B:76,285,115...76,322,703
Ensembl chr2B:194,204,613...194,242,956 		JBrowse link
G DSPP dentin sialophosphoprotein acts_upstream_of_or_within ISO (PMID:26972716) MGI PMID:26972716 NCBI chr 4:79,903,923...79,909,836 JBrowse link
G ENPP1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO (PMID:22359666) MGI PMID:22359666 NCBI chr 6:129,591,858...129,673,000
Ensembl chr 6:133,698,640...133,783,644 		JBrowse link
G EXT1 exostosin glycosyltransferase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21310272)
(PMID:21310272), (PMID:29545125)		 Ensembl
MGI		 PMID:21310272 PMID:29545125 GO_REF:0000107 NCBI chr 8:114,489,325...114,803,763
Ensembl chr 8:117,011,919...117,324,851 		JBrowse link
G EXT2 exostosin glycosyltransferase 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21310272) Ensembl
MGI		 PMID:21310272 GO_REF:0000107 NCBI chr11:44,055,670...44,204,055
Ensembl chr11:44,522,797...44,699,447 		JBrowse link
G IHH Indian hedgehog signaling molecule involved_in ISO (MGI:1344187|PMID:10465785), (MGI:1351296|PMID:10631175) UniProt PMID:10465785 PMID:10631175 MGI:1344187 MGI:1351296 NCBI chr2B:106,312,472...106,319,124
Ensembl chr2B:224,906,271...224,911,506 		JBrowse link
G SOX9 SRY-box transcription factor 9 acts_upstream_of_or_within ISO (PMID:11371614) MGI PMID:11371614 NCBI chr17:66,028,737...66,034,122 JBrowse link
endochondral ossification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALPL alkaline phosphatase, biomineralization associated involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20684022) Ensembl
MGI		 PMID:20684022 GO_REF:0000107 NCBI chr 1:20,702,509...20,772,301
Ensembl chr 1:21,667,732...21,736,688 		JBrowse link
G BMP4 bone morphogenetic protein 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:34,542,132...34,549,286
Ensembl chr14:52,821,872...52,828,752 		JBrowse link
G BMP6 bone morphogenetic protein 6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9664685) Ensembl
MGI		 PMID:9664685 GO_REF:0000107 NCBI chr 6:7,564,164...7,720,341
Ensembl chr 6:7,848,249...8,000,649 		JBrowse link
G BPNT2 3'(2'), 5'-bisphosphate nucleotidase 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18539921) Ensembl
MGI		 PMID:18539921 GO_REF:0000107 NCBI chr 8:53,385,837...53,417,019
Ensembl chr 8:50,753,792...50,785,055 		JBrowse link
G CBS cystathionine beta-synthase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15622513) Ensembl
MGI		 PMID:15622513 GO_REF:0000107 NCBI chr21:29,361,519...29,385,610
Ensembl chr21:42,670,530...42,690,932 		JBrowse link
G COL10A1 collagen type X alpha 1 chain ISO RGD PMID:10853827 RGD:704421 NCBI chr 6:113,921,538...113,961,490
Ensembl chr 6:118,067,477...118,074,684 		JBrowse link
G COL1A1 collagen type I alpha 1 chain involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:8130375) Ensembl
MGI		 PMID:8130375 GO_REF:0000107 NCBI chr17:44,274,349...44,291,764
Ensembl chr17:49,150,677...49,166,677 		JBrowse link
G COL2A1 collagen type II alpha 1 chain acts_upstream_of_or_within ISO (PMID:10100048) MGI PMID:10100048 NCBI chr12:40,726,137...40,757,690 JBrowse link
G CSGALNACT1 chondroitin sulfate N-acetylgalactosaminyltransferase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21148564) Ensembl
MGI		 PMID:21148564 GO_REF:0000107 NCBI chr 8:18,626,998...18,980,416
Ensembl chr 8:15,576,416...15,904,123 		JBrowse link
G CST5 cystatin D involved_in ISO (PMID:16680148) MGI PMID:16680148 NCBI chr20:23,824,663...23,828,483
Ensembl chr20:24,178,197...24,182,016 		JBrowse link
G DLX5 distal-less homeobox 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:88,972,066...88,977,588
Ensembl chr 7:102,555,267...102,561,186 		JBrowse link
G ENPP1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO (PMID:24770645) MGI PMID:24770645 NCBI chr 6:129,591,858...129,673,000
Ensembl chr 6:133,698,640...133,783,644 		JBrowse link
G EXT1 exostosin glycosyltransferase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21185280), (PMID:23958822) Ensembl
MGI		 PMID:21185280 PMID:23958822 GO_REF:0000107 NCBI chr 8:114,489,325...114,803,763
Ensembl chr 8:117,011,919...117,324,851 		JBrowse link
G FGF18 fibroblast growth factor 18 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17014841) Ensembl
MGI		 PMID:17014841 GO_REF:0000107 NCBI chr 5:166,765,061...166,802,277 JBrowse link
G FOXC1 forkhead box C1 involved_in ISO (MGI:5641778|PMID:25808752) UniProt PMID:25808752 MGI:5641778 NCBI chr 6:1,429,051...1,433,180 JBrowse link
G GNAS GNAS complex locus acts_upstream_of_or_within ISO (PMID:15797856) MGI PMID:15797856 NCBI chr20:55,190,607...55,262,245 JBrowse link
G HSPG2 heparan sulfate proteoglycan 2 acts_upstream_of_or_within ISO (PMID:10579729) MGI PMID:10579729 NCBI chr 1:21,014,951...21,129,937
Ensembl chr 1:21,979,504...22,053,400 		JBrowse link
G IFT80 intraflagellar transport 80 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:26098911) Ensembl
MGI		 PMID:26098911 GO_REF:0000107 NCBI chr 3:157,279,076...157,421,478
Ensembl chr 3:165,329,056...165,454,905 		JBrowse link
G INPPL1 inositol polyphosphate phosphatase like 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:67,302,066...67,317,785
Ensembl chr11:70,527,017...70,540,846 		JBrowse link
G LOC100973165 collagen alpha-1(XIII) chain involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:66,277,302...66,434,410
Ensembl chr10:68,807,425...68,963,642 		JBrowse link
G LOC100978090 protein ALEX involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:55,204,188...55,206,608
Ensembl chr20:56,474,459...56,621,747 		JBrowse link
G MEF2C myocyte enhancer factor 2C acts_upstream_of_or_within ISO (PMID:17336904) MGI PMID:17336904 NCBI chr 5:26,480,489...26,650,813
Ensembl chr 5:26,681,700...26,786,426 		JBrowse link
G MEF2D myocyte enhancer factor 2D involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17336904) Ensembl
MGI		 PMID:17336904 GO_REF:0000107 NCBI chr 1:131,806,705...131,844,420
Ensembl chr 1:135,637,801...135,653,866 		JBrowse link
G MMP13 matrix metallopeptidase 13 involved_in ISO
IEA		 RGD
Ensembl		 PMID:10646117 GO_REF:0000107 RGD:10043159 NCBI chr11:97,890,811...97,902,778
Ensembl chr11:101,377,001...101,387,679 		JBrowse link
G MMP14 matrix metallopeptidase 14 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18022611) Ensembl
MGI		 PMID:18022611 GO_REF:0000107 NCBI chr14:3,654,125...3,665,158
Ensembl chr14:21,753,305...21,764,058 		JBrowse link
G MMP16 matrix metallopeptidase 16 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18022611) Ensembl
MGI		 PMID:18022611 GO_REF:0000107 NCBI chr 8:84,736,752...85,026,711
Ensembl chr 8:86,701,882...86,982,518 		JBrowse link
G NAB1 NGFI-A binding protein 1 acts_upstream_of_or_within ISO (PMID:16136673) MGI PMID:16136673 NCBI chr2B:77,949,948...77,994,888
Ensembl chr2B:195,868,102...195,911,497 		JBrowse link
G NAB2 NGFI-A binding protein 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16136673) Ensembl
MGI		 PMID:16136673 GO_REF:0000107 Ensembl chr12:32,085,031...32,091,498 JBrowse link
G NFIX nuclear factor I X involved_in ISO (PMID:17353270) MGI PMID:17353270 NCBI chr19:12,557,020...12,660,316
Ensembl chr19:13,327,690...13,402,406 		JBrowse link
G NPR2 natriuretic peptide receptor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:35,642,534...35,660,210
Ensembl chr 9:36,445,576...36,462,637 		JBrowse link
G PEX7 peroxisomal biogenesis factor 7 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:12915479) Ensembl
MGI		 PMID:12915479 GO_REF:0000107 NCBI chr 6:134,582,933...134,675,388
Ensembl chr 6:138,672,179...138,762,830 		JBrowse link
G PHOSPHO1 phosphoethanolamine/phosphocholine phosphatase 1 acts_upstream_of_or_within ISO (PMID:20684022) MGI PMID:20684022 NCBI chr17:8,373,032...8,381,410
Ensembl chr17:8,357,513...8,364,416 		JBrowse link
G PTHLH parathyroid hormone like hormone acts_upstream_of_or_within ISO (PMID:8895385) MGI PMID:8895385 NCBI chr12:58,341,361...58,355,804
Ensembl chr12:60,960,071...60,973,750 		JBrowse link
G RUNX2 RUNX family transcription factor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10072783) Ensembl
MGI		 PMID:10072783 GO_REF:0000107 NCBI chr 6:45,003,962...45,133,148
Ensembl chr 6:46,189,432...46,524,389 		JBrowse link
G SCX scleraxis bHLH transcription factor involved_in ISO (MGI:4418577|PMID:20059955) UniProt PMID:20059955 MGI:4418577 NCBI chr 8:141,027,765...141,031,194 JBrowse link
G SIK3 SIK family kinase 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22318228) Ensembl
MGI		 PMID:22318228 GO_REF:0000107 NCBI chr11:111,680,884...111,932,424
Ensembl chr11:115,613,478...115,730,158 		JBrowse link
G SMPD3 sphingomyelin phosphodiesterase 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17591962)
(PMID:24505141)
(PMID:21788370)		 Ensembl
MGI		 PMID:17591962 PMID:21788370 PMID:24505141 GO_REF:0000107 NCBI chr16:48,734,664...48,825,241
Ensembl chr16:68,131,905...68,142,871 		JBrowse link
G TEK TEK receptor tyrosine kinase ISO RGD PMID:11735002 RGD:1601509 NCBI chr 9:26,955,339...27,077,809
Ensembl chr 9:27,561,421...27,683,572 		JBrowse link
G TMEM119 transmembrane protein 119 involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:106,166,737...106,173,965
Ensembl chr12:109,563,684...109,564,535 		JBrowse link
frontal suture morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GLI3 GLI family zinc finger 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20570969) Ensembl
MGI		 PMID:20570969 GO_REF:0000107 NCBI chr 7:42,004,965...42,280,772
Ensembl chr 7:42,056,565...42,322,865 		JBrowse link
G MSX2 msh homeobox 2 acts_upstream_of_or_within ISO (PMID:10742104) MGI PMID:10742104 NCBI chr 5:170,063,137...170,070,226
Ensembl chr 5:176,967,902...176,976,609 		JBrowse link
G TGFB1 transforming growth factor beta 1 ISO RGD PMID:12416537 RGD:2302805 NCBI chr19:38,324,009...38,347,003
Ensembl chr19:46,831,659...46,852,973 		JBrowse link
G TGFB2 transforming growth factor beta 2 ISO RGD PMID:12416537 RGD:2302805 NCBI chr 1:193,907,398...194,005,800
Ensembl chr 1:198,758,751...198,859,041 		JBrowse link
G TGFB3 transforming growth factor beta 3 ISO RGD PMID:12416537 RGD:2302805 NCBI chr14:56,516,697...56,542,097
Ensembl chr14:75,359,505...75,382,412 		JBrowse link
growth plate cartilage axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G STC1 stanniocalcin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 8:23,089,339...23,102,245
Ensembl chr 8:20,023,469...20,036,321 		JBrowse link
growth plate cartilage chondrocyte development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COL27A1 collagen type XXVII alpha 1 chain involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22206015) Ensembl
MGI		 PMID:22206015 GO_REF:0000107 NCBI chr 9:85,252,277...85,410,714
Ensembl chr 9:113,627,633...113,775,284 		JBrowse link
G POC1A POC1 centriolar protein A acts_upstream_of_or_within ISO (PMID:26496357) MGI PMID:26496357 NCBI chr 3:52,016,372...52,096,073
Ensembl chr 3:53,245,162...53,324,579 		JBrowse link
growth plate cartilage chondrocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANXA6 annexin A6 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 5:146,528,446...146,585,186
Ensembl chr 5:152,530,445...152,652,231 		JBrowse link
G ATF2 activating transcription factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:62,348,245...62,444,428
Ensembl chr2B:179,799,365...179,895,007 		JBrowse link
G CCDC69 coiled-coil domain containing 69 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 5:146,608,461...146,651,876
Ensembl chr 5:152,530,445...152,652,231 		JBrowse link
G IFT80 intraflagellar transport 80 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:26098911) Ensembl
MGI		 PMID:26098911 GO_REF:0000107 NCBI chr 3:157,279,076...157,421,478
Ensembl chr 3:165,329,056...165,454,905 		JBrowse link
G NPPC natriuretic peptide C involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:119,148,774...119,153,381
Ensembl chr2B:237,936,939...237,941,244 		JBrowse link
growth plate cartilage chondrocyte growth term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CST5 cystatin D involved_in ISO (PMID:16680148) MGI PMID:16680148 NCBI chr20:23,824,663...23,828,483
Ensembl chr20:24,178,197...24,182,016 		JBrowse link
G RARG retinoic acid receptor gamma involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:35,521,276...35,542,814
Ensembl chr12:36,303,359...36,325,111 		JBrowse link
G SOX9 SRY-box transcription factor 9 involved_in ISO (MGI:5317468|PMID:22421045) UniProt PMID:22421045 MGI:5317468 NCBI chr17:66,028,737...66,034,122 JBrowse link
G TGFBR2 transforming growth factor beta receptor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21420963) Ensembl
MGI		 PMID:21420963 GO_REF:0000107 NCBI chr 3:30,536,187...30,623,653
Ensembl chr 3:30,854,460...30,938,856 		JBrowse link
growth plate cartilage chondrocyte morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MATN1 matrilin 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16877353) Ensembl
MGI		 PMID:16877353 GO_REF:0000107 NCBI chr 1:29,984,376...29,996,430
Ensembl chr 1:31,011,638...31,021,695 		JBrowse link
growth plate cartilage chondrocyte proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATF2 activating transcription factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:62,348,245...62,444,428
Ensembl chr2B:179,799,365...179,895,007 		JBrowse link
G CER1 cerberus 1, DAN family BMP antagonist involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:14,552,062...14,559,632
Ensembl chr 9:15,063,766...15,066,776 		JBrowse link
G NPPC natriuretic peptide C involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:119,148,774...119,153,381
Ensembl chr2B:237,936,939...237,941,244 		JBrowse link
growth plate cartilage development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G COL2A1 collagen type II alpha 1 chain ISO spheno-occipital synchondrosis RGD PMID:20591638 RGD:8661256 NCBI chr12:40,726,137...40,757,690 JBrowse link
G COL9A1 collagen type IX alpha 1 chain acts_upstream_of_or_within ISO (PMID:18467703)
(PMID:18191556)		 MGI PMID:18191556 PMID:18467703 NCBI chr 6:68,051,446...68,138,715
Ensembl chr 6:71,349,471...71,436,370 		JBrowse link
G COMP cartilage oligomeric matrix protein involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18191556)
(PMID:18467703)
(PMID:17588960)		 Ensembl
MGI		 PMID:17588960 PMID:18191556 PMID:18467703 GO_REF:0000107 NCBI chr19:18,222,270...18,230,936
Ensembl chr19:19,229,562...19,238,008 		JBrowse link
G FOSL2 FOS like 2, AP-1 transcription factor subunit involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15509771) Ensembl
MGI		 PMID:15509771 GO_REF:0000107 NCBI chr2A:28,392,328...28,416,838
Ensembl chr2A:28,485,613...28,498,397 		JBrowse link
G IFT80 intraflagellar transport 80 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:26098911) Ensembl
MGI		 PMID:26098911 GO_REF:0000107 NCBI chr 3:157,279,076...157,421,478
Ensembl chr 3:165,329,056...165,454,905 		JBrowse link
G MMP13 matrix metallopeptidase 13 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21444811) Ensembl
MGI		 PMID:21444811 GO_REF:0000107 NCBI chr11:97,890,811...97,902,778
Ensembl chr11:101,377,001...101,387,679 		JBrowse link
G NPR2 natriuretic peptide receptor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:35,642,534...35,660,210
Ensembl chr 9:36,445,576...36,462,637 		JBrowse link
G RARA retinoic acid receptor alpha involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19389355) Ensembl
MGI		 PMID:19389355 GO_REF:0000107 NCBI chr17:16,932,485...16,980,958 JBrowse link
G RARB retinoic acid receptor beta involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19389355) Ensembl
MGI		 PMID:19389355 GO_REF:0000107 NCBI chr 3:24,729,220...25,499,187
Ensembl chr 3:25,660,922...25,833,297 		JBrowse link
G RARG retinoic acid receptor gamma involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19389355) Ensembl
MGI		 PMID:19389355 GO_REF:0000107 NCBI chr12:35,521,276...35,542,814
Ensembl chr12:36,303,359...36,325,111 		JBrowse link
G TGFBR2 transforming growth factor beta receptor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21420963) Ensembl
MGI		 PMID:21420963 GO_REF:0000107 NCBI chr 3:30,536,187...30,623,653
Ensembl chr 3:30,854,460...30,938,856 		JBrowse link
G THBS1 thrombospondin 1 acts_upstream_of_or_within ISO (PMID:18467703) MGI PMID:18467703 NCBI chr15:18,521,802...18,538,172
Ensembl chr15:36,776,756...36,793,170 		JBrowse link
G THBS3 thrombospondin 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18467703) Ensembl
MGI		 PMID:18467703 GO_REF:0000107 NCBI chr 1:130,540,486...130,553,534
Ensembl chr 1:134,148,468...134,160,245 		JBrowse link
G ZMPSTE24 zinc metallopeptidase STE24 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11923874) Ensembl
MGI		 PMID:11923874 GO_REF:0000107 NCBI chr 1:39,545,264...39,589,721
Ensembl chr 1:40,869,076...40,912,747 		JBrowse link
lambdoid suture morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GLI3 GLI family zinc finger 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20570969) Ensembl
MGI		 PMID:20570969 GO_REF:0000107 NCBI chr 7:42,004,965...42,280,772
Ensembl chr 7:42,056,565...42,322,865 		JBrowse link
negative regulation of bone trabecula formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHAD chondroadherin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23755099) Ensembl
MGI		 PMID:23755099 GO_REF:0000107 NCBI chr17:44,558,931...44,565,450
Ensembl chr17:49,432,883...49,437,337 		JBrowse link
G CYP27B1 cytochrome P450 family 27 subfamily B member 1 ISO RGD PMID:32231239 RGD:32716373 NCBI chr12:31,158,814...31,164,462
Ensembl chr12:31,419,773...31,424,822 		JBrowse link
G GREM1 gremlin 1, DAN family BMP antagonist involved_in ISO (PMID:15539560) BHF-UCL PMID:15539560 NCBI chr15:11,213,870...11,230,619 JBrowse link
G VDR vitamin D receptor ISO RGD PMID:32231239 RGD:32716373 NCBI chr12:40,828,413...40,891,700
Ensembl chr12:41,702,742...41,766,192 		JBrowse link
negative regulation of growth plate cartilage chondrocyte proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DSPP dentin sialophosphoprotein acts_upstream_of_or_within ISO (PMID:26972716) MGI PMID:26972716 NCBI chr 4:79,903,923...79,909,836 JBrowse link
perichondral bone morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EXT1 exostosin glycosyltransferase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:28768899) Ensembl
MGI		 PMID:28768899 GO_REF:0000107 NCBI chr 8:114,489,325...114,803,763
Ensembl chr 8:117,011,919...117,324,851 		JBrowse link
regulation of growth plate cartilage chondrocyte proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CARM1 coactivator associated arginine methyltransferase 1 acts_upstream_of_or_within ISO (PMID:19725955) MGI PMID:19725955 NCBI chr19:10,424,993...10,476,702
Ensembl chr19:11,144,733...11,195,948 		JBrowse link
G LOC100990437 NADPH--cytochrome P450 reductase ISO positive regulation RGD PMID:19264869 RGD:2316785 NCBI chr 7:68,035,021...68,105,934
Ensembl chr 7:82,364,418...82,437,530 		JBrowse link
sagittal suture morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GLI3 GLI family zinc finger 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20570969) Ensembl
MGI		 PMID:20570969 GO_REF:0000107 NCBI chr 7:42,004,965...42,280,772
Ensembl chr 7:42,056,565...42,322,865 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16313
    developmental process 6551
      anatomical structure morphogenesis 2844
        animal organ morphogenesis 1148
          skeletal system morphogenesis 269
            bone morphogenesis + 123
            bone trabecula formation + 14
            cartilage condensation + 22
            embryonic skeletal system morphogenesis + 107
Path 2
Term Annotations click to browse term
  biological_process 16313
    developmental process 6551
      anatomical structure development 6160
        multicellular organism development 4965
          system development 4315
            skeletal system development 570
              skeletal system morphogenesis 269
                bone morphogenesis + 123
                bone trabecula formation + 14
                cartilage condensation + 22
                embryonic skeletal system morphogenesis + 107
paths to the root