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ONTOLOGY REPORT - ANNOTATIONS

Term:skeletal system morphogenesis
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Accession:GO:0048705 term browser browse the term
Definition:The process in which the anatomical structures of the skeleton are generated and organized.
Synonyms:exact_synonym: skeletal morphogenesis


show annotations for term's descendants           Sort by:
skeletal system morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr2b activin A receptor type 2B acts_upstream_of_or_within ISO
IEA 		MGI:1857709|MGI:98728 (PMID:16845371), (PMID:16991118)
GO_REF:0000107 		RGD
Ensembl		 PMID:16845371 PMID:16991118 GO_REF:0000107 NCBI chr 8:119,138,901...119,178,477
Ensembl chr 8:128,016,526...128,048,171 		JBrowse link
G Alx4 ALX homeobox 4 acts_upstream_of_or_within ISO
IEA 		MGI:1857484 (PMID:9374397)
GO_REF:0000107 		RGD
Ensembl		 PMID:9374397 GO_REF:0000107 NCBI chr 3:79,611,682...79,648,260
Ensembl chr 3:100,067,052...100,103,624 		JBrowse link
G Ankrd11 ankyrin repeat domain containing 11 acts_upstream_of_or_within
involved_in 		ISO
IEA 		(PMID:21782149)
GO_REF:0000117
GO_REF:0000107
MGI:3797584 (PMID:17986521) 		RGD
UniProt
Ensembl		 PMID:17986521 PMID:21782149 GO_REF:0000107 GO_REF:0000117 NCBI chr19:67,848,836...68,007,491
Ensembl chr19:67,848,844...68,007,491 		JBrowse link
G Arid5b AT-rich interaction domain 5B acts_upstream_of_or_within ISO MGI:3526852 (PMID:17143286) RGD PMID:17143286 NCBI chr20:20,305,693...20,489,689
Ensembl chr20:20,306,712...20,489,686 		JBrowse link
G Cdh11 cadherin 11 acts_upstream_of_or_within ISO MGI:3526861 (PMID:17143286) RGD PMID:17143286 NCBI chr19:2,152,961...2,312,140
Ensembl chr19:2,154,840...2,312,140 		JBrowse link
G Col11a1 collagen type XI alpha 1 chain acts_upstream_of_or_within ISO MGI:1856399 (PMID:7859283) RGD PMID:7859283 NCBI chr 2:204,509,136...204,702,264
Ensembl chr 2:204,509,136...204,702,264 		JBrowse link
G Col11a2 collagen type XI alpha 2 chain acts_upstream_of_or_within ISO MGI:2154689 (PMID:11668593) RGD PMID:11668593 NCBI chr20:4,786,932...4,816,598
Ensembl chr20:4,788,829...4,817,648 		JBrowse link
G Col1a1 collagen type I alpha 1 chain acts_upstream_of_or_within ISO
IEA 		MGI:97009 (PMID:17440987)
GO_REF:0000107 		RGD
Ensembl		 PMID:17440987 GO_REF:0000107 NCBI chr10:80,380,458...80,397,461
Ensembl chr10:80,380,453...80,397,460 		JBrowse link
G Col2a1 collagen type II alpha 1 chain acts_upstream_of_or_within ISO
IEA 		MGI:1857275|MGI:2152978 (PMID:7276808), (PMID:7590256), (PMID:8192242), (PMID:9915573)
GO_REF:0000107 		RGD
Ensembl		 PMID:7276808 PMID:7590256 PMID:8192242 PMID:9915573 GO_REF:0000107 NCBI chr 7:130,977,561...131,006,627
Ensembl chr 7:130,977,561...131,006,627 		JBrowse link
G Csrnp1 cysteine and serine rich nuclear protein 1 acts_upstream_of_or_within ISO
IEA 		MGI:3526868 (PMID:17143286)
GO_REF:0000107 		RGD
Ensembl		 PMID:17143286 GO_REF:0000107 NCBI chr 8:119,704,712...119,717,767
Ensembl chr 8:128,582,365...128,588,469 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr 1:194,175,703...194,280,914
Ensembl chr 1:194,175,705...194,280,914 		JBrowse link
G Fgr FGR proto-oncogene, Src family tyrosine kinase acts_upstream_of_or_within ISO MGI:3665439 (PMID:16964445) RGD PMID:16964445 NCBI chr 5:150,473,767...150,503,524
Ensembl chr 5:150,473,792...150,503,169 		JBrowse link
G Fmn1 formin 1 acts_upstream_of_or_within ISO MGI:3718051 (PMID:17554679) RGD PMID:17554679 NCBI chr 3:120,555,445...120,939,978
Ensembl chr 3:120,555,431...120,933,124 		JBrowse link
G Hhip Hedgehog-interacting protein involved_in ISO (PMID:10050855) RGD PMID:10050855 NCBI chr19:44,768,038...44,856,878
Ensembl chr19:44,767,536...44,862,795 		JBrowse link
G Hoxb2 homeobox B2 acts_upstream_of_or_within ISO
IEA 		MGI:2151772|MGI:96185 (PMID:9012503)
GO_REF:0000107 		RGD
Ensembl		 PMID:9012503 GO_REF:0000107 NCBI chr10:81,317,828...81,320,220
Ensembl chr10:81,814,340...81,816,726 		JBrowse link
G Hoxb4 homeo box B4 acts_upstream_of_or_within ISO
IEA 		MGI:2388364|MGI:96183 (PMID:9012503)
GO_REF:0000107 		RGD
Ensembl		 PMID:9012503 GO_REF:0000107 NCBI chr10:81,284,552...81,287,134
Ensembl chr10:81,781,090...81,783,666 		JBrowse link
G Hoxb8 homeo box B8 acts_upstream_of_or_within
involved_in 		ISO
IEA 		MGI:1934178|MGI:96198|MGI:96209 (PMID:11311170)
GO_REF:0000117 		RGD
UniProt		 PMID:11311170 GO_REF:0000117 NCBI chr10:81,248,313...81,251,261
Ensembl chr10:81,739,704...81,747,802 		JBrowse link
G Hoxc8 homeobox C8 acts_upstream_of_or_within
involved_in 		ISO
IEA 		MGI:2149030|MGI:96189|MGI:96209 (PMID:11311170)
GO_REF:0000117
GO_REF:0000107 		RGD
UniProt
Ensembl		 PMID:11311170 GO_REF:0000107 GO_REF:0000117 NCBI chr 7:134,127,937...134,130,503
Ensembl chr 7:136,006,162...136,009,849 		JBrowse link
G Hoxd8 homeobox D8 acts_upstream_of_or_within
involved_in 		ISO
IEA 		MGI:2151815|MGI:96189|MGI:96198 (PMID:11311170)
GO_REF:0000117 		RGD
UniProt		 PMID:11311170 GO_REF:0000117 NCBI chr 3:80,015,223...80,017,789
Ensembl chr 3:80,014,735...80,018,765 		JBrowse link
G Hyal2 hyaluronidase 2 acts_upstream_of_or_within ISO
IEA 		MGI:3836764 (PMID:18772348)
GO_REF:0000107 		RGD
Ensembl		 PMID:18772348 GO_REF:0000107 NCBI chr 8:117,121,802...117,125,494
Ensembl chr 8:117,121,787...117,125,493 		JBrowse link
G Idua alpha-L-iduronidase acts_upstream_of_or_within ISO MGI:2176236 (PMID:9097952) RGD PMID:9097952 NCBI chr14:1,031,588...1,059,494
Ensembl chr14:1,176,577...1,204,066 		JBrowse link
G Lama5 laminin subunit alpha 5 involved_in ISO
IEA 		(PMID:33242826)
GO_REF:0000107 		RGD
Ensembl		 PMID:33242826 GO_REF:0000107 NCBI chr 3:187,647,904...187,695,974
Ensembl chr 3:187,647,904...187,696,173 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:2673982 (PMID:15469977) RGD PMID:15469977 NCBI chr 4:168,997,937...169,131,716
Ensembl chr 4:169,000,968...169,131,716 		JBrowse link
G Megf8 multiple EGF-like-domains 8 involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr 1:80,902,236...80,951,614
Ensembl chr 1:90,030,388...90,079,422 		JBrowse link
G Mmp2 matrix metallopeptidase 2 acts_upstream_of_or_within ISO
IEA 		MGI:88467 (PMID:17440987)
GO_REF:0000107 		RGD
Ensembl		 PMID:17440987 GO_REF:0000107 NCBI chr19:30,327,643...30,355,856
Ensembl chr19:30,327,643...30,355,856 		JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor acts_upstream_of_or_within ISO MGI:2178233|MGI:2386570 (PMID:17523175) RGD PMID:17523175 NCBI chr 7:95,483,105...95,488,031
Ensembl chr 7:95,483,105...95,488,028 		JBrowse link
G Nkx3-2 NK3 homeobox 2 acts_upstream_of_or_within ISO
IEA 		MGI:1857926 (PMID:10572046)
GO_REF:0000107 		RGD
Ensembl		 PMID:10572046 GO_REF:0000107 NCBI chr14:69,183,795...69,186,182
Ensembl chr14:73,395,619...73,399,558 		JBrowse link
G Nle1 notchless homolog 1 acts_upstream_of_or_within ISO
IEA 		MGI:2176174|MGI:5553357 (PMID:24824078)
GO_REF:0000107 		RGD
Ensembl		 PMID:24824078 GO_REF:0000107 NCBI chr10:67,834,059...67,844,771
Ensembl chr10:68,331,609...68,340,386 		JBrowse link
G P2rx7 purinergic receptor P2X 7 acts_upstream_of_or_within ISO MGI:2386080 (PMID:18519738) RGD PMID:18519738 NCBI chr12:39,550,531...39,594,984
Ensembl chr12:39,540,567...39,595,193 		JBrowse link
G Pdgfra platelet derived growth factor receptor alpha acts_upstream_of_or_within ISO
IEA 		MGI:1926728 (PMID:17143286)
GO_REF:0000107 		RGD
Ensembl		 PMID:17143286 GO_REF:0000107 NCBI chr14:33,360,027...33,408,604
Ensembl chr14:33,360,028...33,408,516 		JBrowse link
G Pdgfrb platelet derived growth factor receptor beta acts_upstream_of_or_within ISO MGI:2135508 (PMID:17143286) RGD PMID:17143286 NCBI chr18:56,770,348...56,809,228
Ensembl chr18:56,770,348...56,809,233 		JBrowse link
G Plekha1 pleckstrin homology domain containing A1 acts_upstream_of_or_within ISO
IEA 		MGI:3526857 (PMID:17143286)
GO_REF:0000107 		RGD
Ensembl		 PMID:17143286 GO_REF:0000107 NCBI chr 1:185,427,982...185,479,157
Ensembl chr 1:194,851,547...194,909,413 		JBrowse link
G Prkra protein activator of interferon induced protein kinase EIF2AK2 acts_upstream_of_or_within ISO
IEA 		MGI:3626341 (PMID:16571658)
GO_REF:0000107 		RGD
Ensembl		 PMID:16571658 GO_REF:0000107 NCBI chr 3:61,575,447...61,594,393
Ensembl chr 3:81,982,673...82,001,525 		JBrowse link
G Psen1 presenilin 1 acts_upstream_of_or_within ISO
IEA 		MGI:1857974 (PMID:9160754)
GO_REF:0000107 		RGD
Ensembl		 PMID:9160754 GO_REF:0000107 NCBI chr 6:109,054,160...109,106,191
Ensembl chr 6:109,060,352...109,106,189 		JBrowse link
G Rab33b RAB33B, member RAS oncogene family involved_in ISO
IEA 		(PMID:23042644)
GO_REF:0000107 		RGD
Ensembl		 PMID:23042644 GO_REF:0000107 NCBI chr 2:135,528,116...135,538,719
Ensembl chr 2:137,678,978...137,689,581 		JBrowse link
G Recql4 RecQ like helicase 4 acts_upstream_of_or_within ISO MGI:3045113 (PMID:15703196) RGD PMID:15703196 NCBI chr 7:110,304,092...110,311,426
Ensembl chr 7:110,304,094...110,311,258 		JBrowse link
G Rflna refilin A involved_in
acts_upstream_of_or_within 		IBA
ISO 		GO_REF:0000033
MGI:1923816 (PMID:24436304) 		GO_Central
RGD		 PMID:24436304 GO_REF:0000033 NCBI chr12:31,633,360...31,642,313
Ensembl chr12:37,294,643...37,303,535 		JBrowse link
G Rflnb refilin B involved_in
acts_upstream_of_or_within 		IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000107
MGI:1920371 (PMID:24436304) 		GO_Central
Ensembl
RGD		 PMID:24436304 GO_REF:0000033 GO_REF:0000107 NCBI chr10:60,893,693...60,899,970
Ensembl chr10:61,390,659...61,398,224 		JBrowse link
G Runx2 RUNX family transcription factor 2 acts_upstream_of_or_within ISO MGI:2176465 (PMID:15030764) RGD PMID:15030764 NCBI chr 9:23,661,278...23,990,248
Ensembl chr 9:23,664,952...23,990,027 		JBrowse link
G Ryk receptor-like tyrosine kinase acts_upstream_of_or_within ISO MGI:2667542 (PMID:10932185) RGD PMID:10932185 NCBI chr 8:103,419,338...103,492,083
Ensembl chr 8:112,298,369...112,370,908 		JBrowse link
G Schip1 schwannomin interacting protein 1 acts_upstream_of_or_within ISO
IEA 		MGI:3526869 (PMID:17143286)
GO_REF:0000107 		RGD
Ensembl		 PMID:17143286 GO_REF:0000107 NCBI chr 2:152,127,171...152,888,587
Ensembl chr 2:155,060,798...155,198,557 		JBrowse link
G Sgpl1 sphingosine-1-phosphate lyase 1 acts_upstream_of_or_within ISO
IEA 		MGI:3526851 (PMID:17143286)
GO_REF:0000107 		RGD
Ensembl		 PMID:17143286 GO_REF:0000107 NCBI chr20:29,047,793...29,094,209
Ensembl chr20:29,592,721...29,667,753 		JBrowse link
G Sh3pxd2b SH3 and PX domains 2B involved_in ISO (PMID:27711054) RGD PMID:27711054 NCBI chr10:16,918,611...17,027,499
Ensembl chr10:17,422,947...17,512,854 		JBrowse link
G Shox2 SHOX homeobox 2 involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr 2:153,524,324...153,537,571
Ensembl chr 2:153,527,571...153,537,161 		JBrowse link
G Sik3 SIK family kinase 3 acts_upstream_of_or_within ISO
IEA 		MGI:5317918 (PMID:22318228)
GO_REF:0000107 		RGD
Ensembl		 PMID:22318228 GO_REF:0000107 NCBI chr 8:55,208,969...55,419,138
Ensembl chr 8:55,208,815...55,419,138 		JBrowse link
G Six1 SIX homeobox 1 acts_upstream_of_or_within ISO
IEA 		MGI:2655195 (PMID:12874121)
GO_REF:0000107 		RGD
Ensembl		 PMID:12874121 GO_REF:0000107 NCBI chr 6:97,482,617...97,487,853
Ensembl chr 6:97,482,617...97,487,853 		JBrowse link
G Spef2 sperm flagellar 2 acts_upstream_of_or_within ISO MGI:5295267 (PMID:21715716) RGD PMID:21715716 NCBI chr 2:60,239,655...60,421,850
Ensembl chr 2:60,239,655...60,421,850 		JBrowse link
G Tbx4 T-box transcription factor 4 involved_in ISO (PMID:15106123) RGD PMID:15106123 NCBI chr10:71,228,145...71,258,222
Ensembl chr10:71,197,727...71,258,218 		JBrowse link
G Tcf15 transcription factor 15 acts_upstream_of_or_within ISO
IEA 		MGI:1929775 (PMID:8955271)
GO_REF:0000107 		RGD
Ensembl		 PMID:8955271 GO_REF:0000107 NCBI chr 3:161,099,301...161,105,083
Ensembl chr 3:161,099,301...161,105,083 		JBrowse link
G Tfap2a transcription factor AP-2 alpha acts_upstream_of_or_within ISO MGI:1888387 (PMID:8622765) RGD PMID:8622765 NCBI chr17:24,230,064...24,253,219
Ensembl chr17:24,229,910...24,253,219 		JBrowse link
G Tgfbr1 transforming growth factor, beta receptor 1 acts_upstream_of_or_within ISO
IEA 		MGI:87912 (PMID:16845371)
GO_REF:0000107 		RGD
Ensembl		 PMID:16845371 GO_REF:0000107 NCBI chr 5:66,449,348...66,506,371
Ensembl chr 5:66,449,293...66,527,260 		JBrowse link
G Tiparp TCDD-inducible poly(ADP-ribose) polymerase acts_upstream_of_or_within ISO
IEA 		MGI:3526866 (PMID:17143286)
GO_REF:0000107 		RGD
Ensembl		 PMID:17143286 GO_REF:0000107 NCBI chr 2:149,753,682...149,780,327
Ensembl chr 2:152,063,751...152,090,406 		JBrowse link
G Uncx UNC homeobox involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr12:20,206,604...20,211,125
Ensembl chr12:20,206,609...20,211,125 		JBrowse link
G Wdr48 WD repeat domain 48 acts_upstream_of_or_within ISO
IEA 		MGI:3877670 (PMID:24001775)
GO_REF:0000107 		RGD
Ensembl		 PMID:24001775 GO_REF:0000107 NCBI chr 8:128,499,721...128,532,930
Ensembl chr 8:128,499,716...128,532,930 		JBrowse link
G Wnt7a Wnt family member 7A acts_upstream_of_or_within ISO MGI:1857009 RGD MGI:48652 NCBI chr 4:125,420,276...125,466,149
Ensembl chr 4:125,420,276...125,466,149 		JBrowse link
G Wwox WW domain-containing oxidoreductase acts_upstream_of_or_within ISO MGI:3704944 (PMID:18487609) RGD PMID:18487609 NCBI chr19:59,338,402...60,269,323
Ensembl chr19:59,341,233...60,269,441 		JBrowse link
G Zfand5 zinc finger AN1-type containing 5 acts_upstream_of_or_within ISO
IEA 		MGI:3526860 (PMID:17143286)
GO_REF:0000107 		RGD
Ensembl		 PMID:17143286 GO_REF:0000107 NCBI chr 1:218,765,735...218,780,391
Ensembl chr 1:228,192,311...228,206,947 		JBrowse link
G Zfp950 zinc finger protein 950 acts_upstream_of_or_within ISO
IEA 		MGI:3526859 (PMID:17143286)
GO_REF:0000107 		RGD
Ensembl		 PMID:17143286 GO_REF:0000107 NCBI chr 1:260,248,231...260,265,211 JBrowse link
bone morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acp5 acid phosphatase 5, tartrate resistant acts_upstream_of_or_within ISO
IEA 		MGI:2180086 (PMID:8898228)
GO_REF:0000107 		RGD
Ensembl		 PMID:8898228 GO_REF:0000107 NCBI chr 8:28,939,984...28,946,639
Ensembl chr 8:28,939,985...28,943,929 		JBrowse link
G Actn3 actinin alpha 3 involved_in ISO
IEA 		(PMID:21784188)
GO_REF:0000107 		RGD
Ensembl		 PMID:21784188 GO_REF:0000107 NCBI chr 1:211,588,473...211,604,401
Ensembl chr 1:211,588,474...211,604,401 		JBrowse link
G Atg9a autophagy related 9A involved_in ISS
ISO 		GO_REF:0000024
(PMID:27811852) 		UniProt
RGD		 PMID:27811852 GO_REF:0000024 NCBI chr 9:76,677,403...76,688,050
Ensembl chr 9:84,126,071...84,136,666 		JBrowse link
G Cdx1 caudal type homeo box 1 acts_upstream_of_or_within ISO
IEA 		MGI:2154514|MGI:97858 (PMID:11784046)
GO_REF:0000107 		RGD
Ensembl		 PMID:11784046 GO_REF:0000107 NCBI chr18:56,742,970...56,761,299
Ensembl chr18:56,742,984...56,761,299 		JBrowse link
G Chsy1 chondroitin sulfate synthase 1 acts_upstream_of_or_within ISO
IEA 		MGI:5007063 (PMID:22280990)
GO_REF:0000107 		RGD
Ensembl		 PMID:22280990 GO_REF:0000107 NCBI chr 1:119,689,626...119,750,711
Ensembl chr 1:129,100,041...129,161,081 		JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 acts_upstream_of_or_within ISO MGI:2179740 (PMID:20549734) RGD PMID:20549734 NCBI chr 1:14,132,303...14,134,746
Ensembl chr 1:14,103,457...14,134,782 		JBrowse link
G Col9a1 collagen type IX alpha 1 chain acts_upstream_of_or_within ISO MGI:88469 (PMID:18191556) RGD PMID:18191556 NCBI chr 9:26,585,034...26,668,222
Ensembl chr 9:34,003,905...34,164,543 		JBrowse link
G Comp cartilage oligomeric matrix protein acts_upstream_of_or_within ISO
IEA 		MGI:88465 (PMID:18191556)
GO_REF:0000107 		RGD
Ensembl		 PMID:18191556 GO_REF:0000107 NCBI chr16:19,047,206...19,055,584
Ensembl chr16:19,081,172...19,089,605 		JBrowse link
G Cst5 cystatin D involved_in ISO MGI:3629665 (PMID:16680148) RGD PMID:16680148 NCBI chr 3:137,573,194...137,577,754
Ensembl chr 3:158,033,791...158,038,345 		JBrowse link
G Cyp26b1 cytochrome P450, family 26, subfamily b, polypeptide 1 involved_in ISO
IEA 		(PMID:22019272)
GO_REF:0000107 		RGD
Ensembl		 PMID:22019272 GO_REF:0000107 NCBI chr 4:118,599,356...118,616,176
Ensembl chr 4:118,599,356...118,616,176 		JBrowse link
G Dhrs3 dehydrogenase/reductase 3 acts_upstream_of_or_within ISO
IEA 		MGI:5007106 (PMID:24005908)
GO_REF:0000107 		RGD
Ensembl		 PMID:24005908 GO_REF:0000107 NCBI chr 5:162,031,853...162,065,655
Ensembl chr 5:162,031,386...162,065,653 		JBrowse link
G Dlx5 distal-less homeobox 5 acts_upstream_of_or_within ISO
IEA 		MGI:2180474 (PMID:16330189)
GO_REF:0000107 		RGD
Ensembl		 PMID:16330189 GO_REF:0000107 NCBI chr 4:35,965,579...35,969,973
Ensembl chr 4:35,965,579...35,969,845 		JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
(PMID:20080592), (PMID:20404326), (PMID:23192691) 		Ensembl
RGD		 PMID:20080592 PMID:20404326 PMID:23192691 GO_REF:0000107 NCBI chr 7:86,265,651...86,544,488
Ensembl chr 7:86,259,900...86,544,567 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO MGI:2153799 (PMID:10518547) RGD PMID:10518547 NCBI chr 1:194,175,703...194,280,914
Ensembl chr 1:194,175,705...194,280,914 		JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 acts_upstream_of_or_within
involved_in 		ISO
IEA 		MGI:1931521 (PMID:19407216)
GO_REF:0000117
(PMID:20582225) 		RGD
UniProt		 PMID:19407216 PMID:20582225 GO_REF:0000117 NCBI chr14:81,211,800...81,227,215
Ensembl chr14:81,211,800...81,227,209 		JBrowse link
G Glg1 golgi glycoprotein 1 acts_upstream_of_or_within ISO
IEA 		MGI:4829764 (PMID:20530870)
GO_REF:0000107 		RGD
Ensembl		 PMID:20530870 GO_REF:0000107 NCBI chr19:56,034,248...56,133,538
Ensembl chr19:56,006,459...56,133,528 		JBrowse link
G Gusb glucuronidase, beta acts_upstream_of_or_within ISO MGI:96824 (PMID:20018674), (PMID:25559179) RGD PMID:20018674 PMID:25559179 NCBI chr12:32,337,281...32,350,838
Ensembl chr12:32,334,075...32,363,024 		JBrowse link
G Has2 hyaluronan synthase 2 acts_upstream_of_or_within ISO
IEA 		MGI:2176070|MGI:4360705 (PMID:21246657)
GO_REF:0000107 		RGD
Ensembl		 PMID:21246657 GO_REF:0000107 NCBI chr 7:90,002,929...90,028,933
Ensembl chr 7:90,002,929...90,018,535 		JBrowse link
G Ifitm5 interferon induced transmembrane protein 5 involved_in ISO
IEA
IBA 		(PMID:24519609)
GO_REF:0000107
(PMID:20838829)
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:20838829 PMID:24519609 GO_REF:0000033 GO_REF:0000107 NCBI chr 1:205,475,465...205,478,191
Ensembl chr 1:205,475,330...205,476,896 		JBrowse link
G Ift80 intraflagellar transport 80 acts_upstream_of_or_within ISO
IEA 		MGI:3856827 (PMID:21227999)
GO_REF:0000107 		RGD
Ensembl		 PMID:21227999 GO_REF:0000107 NCBI chr 2:153,144,707...153,240,024
Ensembl chr 2:155,455,774...155,550,275 		JBrowse link
G Lrp5 LDL receptor related protein 5 involved_in ISO
IEA 		(PMID:19673927), (PMID:20146170), (PMID:20630166)
GO_REF:0000107 		RGD
Ensembl		 PMID:19673927 PMID:20146170 PMID:20630166 GO_REF:0000107 NCBI chr 1:210,243,499...210,346,886
Ensembl chr 1:210,243,502...210,346,822 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO MGI:1861309 RGD MGI:61254 NCBI chr 4:168,997,937...169,131,716
Ensembl chr 4:169,000,968...169,131,716 		JBrowse link
G Ltbp3 latent transforming growth factor beta binding protein 3 acts_upstream_of_or_within ISO
IEA 		MGI:2180017 (PMID:11790802), (PMID:20530870)
GO_REF:0000107 		RGD
Ensembl		 PMID:11790802 PMID:20530870 GO_REF:0000107 NCBI chr 1:203,029,412...203,045,975
Ensembl chr 1:212,459,185...212,475,302 		JBrowse link
G Ltf lactotransferrin involved_in ISO (PMID:15166119) RGD PMID:15166119 NCBI chr 8:119,878,344...119,901,189
Ensembl chr 8:119,878,344...119,901,189 		JBrowse link
G Mmp13 matrix metallopeptidase 13 involved_in ISO
IEA
ISS 		(PMID:16167086)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:16167086 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:12,782,829...12,793,108
Ensembl chr 8:12,782,813...12,793,105 		JBrowse link
G Msx1 msh homeobox 1 acts_upstream_of_or_within ISO MGI:1933766|MGI:97169 (PMID:12489152), (PMID:16330189), (PMID:17693062) RGD PMID:12489152 PMID:16330189 PMID:17693062 NCBI chr14:77,185,802...77,189,735
Ensembl chr14:77,185,802...77,189,735 		JBrowse link
G Msx2 msh homeobox 2 acts_upstream_of_or_within
involved_in 		ISO
IEA 		MGI:97168 (PMID:17693062)
GO_REF:0000117
GO_REF:0000107 		RGD
UniProt
Ensembl		 PMID:17693062 GO_REF:0000107 GO_REF:0000117 NCBI chr17:11,097,214...11,102,879
Ensembl chr17:11,102,247...11,107,945 		JBrowse link
G Osr2 odd-skipped related transcription factor 2 involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:17547533) 		UniProt
Ensembl
RGD		 PMID:17547533 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:66,487,841...66,495,003
Ensembl chr 7:68,373,049...68,380,805 		JBrowse link
G Pappa2 pappalysin 2 acts_upstream_of_or_within ISO
IEA 		MGI:5504500 (PMID:23457539)
GO_REF:0000107 		RGD
Ensembl		 PMID:23457539 GO_REF:0000107 NCBI chr13:70,873,918...71,147,874
Ensembl chr13:73,407,385...73,681,568 		JBrowse link
G Pax1 paired box 1 acts_upstream_of_or_within ISO
IEA 		MGI:1856223|MGI:1856225 (PMID:7607069)
GO_REF:0000107 		RGD
Ensembl		 PMID:7607069 GO_REF:0000107 NCBI chr 3:134,792,330...134,801,637
Ensembl chr 3:155,245,529...155,254,836 		JBrowse link
G Rarg retinoic acid receptor, gamma acts_upstream_of_or_within ISO
IEA 		MGI:1931079|MGI:88360 (PMID:11784046), (PMID:8388780)
GO_REF:0000107 		RGD
Ensembl		 PMID:8388780 PMID:11784046 GO_REF:0000107 NCBI chr 7:135,246,427...135,268,889
Ensembl chr 7:135,246,427...135,268,889 		JBrowse link
G Ripply1 ripply transcriptional repressor 1 acts_upstream_of_or_within ISO MGI:2685968|MGI:4459309 (PMID:20346937) RGD PMID:20346937 NCBI chr  X:103,436,731...103,440,904
Ensembl chr  X:108,220,656...108,229,064 		JBrowse link
G Ripply2 ripply transcriptional repressor 2 acts_upstream_of_or_within ISO MGI:3614797 (PMID:20346937) RGD PMID:20346937 NCBI chr 8:87,974,444...87,979,002
Ensembl chr 8:96,854,508...96,858,963 		JBrowse link
G Sfrp4 secreted frizzled-related protein 4 involved_in ISO
IEA
ISS 		(PMID:27355534)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:27355534 GO_REF:0000024 GO_REF:0000107 NCBI chr17:49,974,532...50,026,448
Ensembl chr17:50,015,812...50,026,395 		JBrowse link
G Ski Ski proto-oncogene acts_upstream_of_or_within ISO MGI:2177555 (PMID:9284043) RGD PMID:9284043 NCBI chr 5:170,995,851...171,064,957
Ensembl chr 5:170,995,851...171,064,957 		JBrowse link
G Sp5 Sp5 transcription factor acts_upstream_of_or_within ISO
IEA 		MGI:98472 (PMID:11071760)
GO_REF:0000107 		RGD
Ensembl		 PMID:11071760 GO_REF:0000107 NCBI chr 3:55,274,931...55,277,733
Ensembl chr 3:75,682,677...75,685,479 		JBrowse link
G Tbxt T-box transcription factor T acts_upstream_of_or_within ISO
IEA 		MGI:1927715 (PMID:11071760)
GO_REF:0000107 		RGD
Ensembl		 PMID:11071760 GO_REF:0000107 NCBI chr 1:54,845,674...54,859,340
Ensembl chr 1:54,845,674...54,853,583 		JBrowse link
G Tfap2a transcription factor AP-2 alpha involved_in ISS
ISO 		GO_REF:0000024
(PMID:8622766) 		UniProt
RGD		 PMID:8622766 GO_REF:0000024 NCBI chr17:24,230,064...24,253,219
Ensembl chr17:24,229,910...24,253,219 		JBrowse link
G Tlr4 toll-like receptor 4 acts_upstream_of_or_within ISO MGI:95872 (PMID:20018674) RGD PMID:20018674 NCBI chr 5:85,161,247...85,174,882
Ensembl chr 5:85,161,192...85,175,007 		JBrowse link
bone trabecula formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col1a1 collagen type I alpha 1 chain acts_upstream_of_or_within ISO
IEA 		MGI:97009 (PMID:17440987)
GO_REF:0000107 		RGD
Ensembl		 PMID:17440987 GO_REF:0000107 NCBI chr10:80,380,458...80,397,461
Ensembl chr10:80,380,453...80,397,460 		JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO MGI:1857079 (PMID:22359666) RGD PMID:22359666 NCBI chr 1:22,518,051...22,583,044
Ensembl chr 1:22,518,069...22,583,044 		JBrowse link
G Fbn2 fibrillin 2 involved_in ISO
IEA 		(PMID:20855508)
GO_REF:0000107 		RGD
Ensembl		 PMID:20855508 GO_REF:0000107 NCBI chr18:51,499,670...51,703,976
Ensembl chr18:53,697,708...53,902,191 		JBrowse link
G Mmp2 matrix metallopeptidase 2 acts_upstream_of_or_within ISO
IEA 		MGI:88467 (PMID:17440987)
GO_REF:0000107 		RGD
Ensembl		 PMID:17440987 GO_REF:0000107 NCBI chr19:30,327,643...30,355,856
Ensembl chr19:30,327,643...30,355,856 		JBrowse link
G Msx2 msh homeobox 2 acts_upstream_of_or_within ISO
IEA 		MGI:1926381 (PMID:10742104)
GO_REF:0000107 		RGD
Ensembl		 PMID:10742104 GO_REF:0000107 NCBI chr17:11,097,214...11,102,879
Ensembl chr17:11,102,247...11,107,945 		JBrowse link
G Sfrp1 secreted frizzled-related protein 1 acts_upstream_of_or_within ISO
IEA 		MGI:3045799 (PMID:14976225)
GO_REF:0000107 		RGD
Ensembl		 PMID:14976225 GO_REF:0000107 NCBI chr16:75,278,325...75,316,736
Ensembl chr16:75,278,325...75,316,736 		JBrowse link
G Thbs3 thrombospondin 3 acts_upstream_of_or_within ISO
IEA 		MGI:3581964 (PMID:15964815)
GO_REF:0000107 		RGD
Ensembl		 PMID:15964815 GO_REF:0000107 NCBI chr 2:174,621,788...174,633,594
Ensembl chr 2:176,919,230...176,931,357 		JBrowse link
G Vegfa vascular endothelial growth factor A acts_upstream_of_or_within ISO MGI:1931048 (PMID:22886301) RGD PMID:22886301 NCBI chr 9:22,452,854...22,468,194
Ensembl chr 9:22,439,392...22,468,194 		JBrowse link
G Wnt10b Wnt family member 10B acts_upstream_of_or_within ISO
IEA 		MGI:3582610 (PMID:15728361)
GO_REF:0000107 		RGD
Ensembl		 PMID:15728361 GO_REF:0000107 NCBI chr 7:131,801,046...131,806,850
Ensembl chr 7:131,801,046...131,806,850 		JBrowse link
cartilage condensation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acan aggrecan acts_upstream_of_or_within ISO
IEA 		MGI:1856465 (PMID:3070812)
GO_REF:0000107 		RGD
Ensembl		 PMID:3070812 GO_REF:0000107 NCBI chr 1:142,390,951...142,453,779
Ensembl chr 1:142,390,951...142,453,779 		JBrowse link
G Barx2 BARX homeobox 2 acts_upstream_of_or_within ISO
IEA 		(PMID:15800003)
GO_REF:0000107 		RGD
Ensembl		 PMID:15800003 GO_REF:0000107 NCBI chr 8:30,251,132...30,319,105
Ensembl chr 8:38,509,277...38,576,978 		JBrowse link
G Bmpr1b bone morphogenetic protein receptor type 1B acts_upstream_of_or_within ISO
IEA 		MGI:2158498 (PMID:10631181)
GO_REF:0000107 		RGD
Ensembl		 PMID:10631181 GO_REF:0000107 NCBI chr 2:233,211,525...233,544,344
Ensembl chr 2:233,211,525...233,544,311 		JBrowse link
G Ccn2 cellular communication network factor 2 acts_upstream_of_or_within ISO (PMID:15305294) RGD PMID:15305294 NCBI chr 1:22,621,498...22,624,614
Ensembl chr 1:22,621,501...22,624,976 		JBrowse link
G Chad chondroadherin IEP RGD PMID:9461555 RGD:69806 NCBI chr10:79,512,170...79,515,941
Ensembl chr10:80,008,767...80,012,816 		JBrowse link
G Col11a1 collagen type XI alpha 1 chain acts_upstream_of_or_within ISO MGI:1856399 (PMID:3070812) RGD PMID:3070812 NCBI chr 2:204,509,136...204,702,264
Ensembl chr 2:204,509,136...204,702,264 		JBrowse link
G Col2a1 collagen type II alpha 1 chain acts_upstream_of_or_within ISO
IEA 		MGI:1857275 (PMID:3070812)
GO_REF:0000107 		RGD
Ensembl		 PMID:3070812 GO_REF:0000107 NCBI chr 7:130,977,561...131,006,627
Ensembl chr 7:130,977,561...131,006,627 		JBrowse link
G Fgf4 fibroblast growth factor 4 acts_upstream_of_or_within
involved_in 		ISO
IEA 		MGI:98726 (PMID:8565825)
GO_REF:0000117
GO_REF:0000107 		RGD
UniProt
Ensembl		 PMID:8565825 GO_REF:0000107 GO_REF:0000117 NCBI chr 1:209,453,229...209,457,085
Ensembl chr 1:209,453,229...209,457,085 		JBrowse link
G Fgf6 fibroblast growth factor 6 acts_upstream_of_or_within
involved_in 		ISO
IEA 		MGI:98726 (PMID:8565825)
GO_REF:0000117
GO_REF:0000107 		RGD
UniProt
Ensembl		 PMID:8565825 GO_REF:0000107 GO_REF:0000117 NCBI chr 4:159,854,913...159,863,447
Ensembl chr 4:161,541,089...161,553,521 		JBrowse link
G Mapk14 mitogen activated protein kinase 14 involved_in IEA
ISO 		GO_REF:0000107
(PMID:17202865) 		Ensembl
RGD		 PMID:17202865 GO_REF:0000107 NCBI chr20:6,751,288...6,812,294
Ensembl chr20:6,751,357...6,812,294 		JBrowse link
G Mycn MYCN proto-oncogene, bHLH transcription factor acts_upstream_of_or_within ISO
IEA 		(PMID:17360777)
GO_REF:0000107 		RGD
Ensembl		 PMID:17360777 GO_REF:0000107 NCBI chr 6:41,446,683...41,452,584
Ensembl chr 6:41,446,684...41,452,508 		JBrowse link
G Myf5 myogenic factor 5 acts_upstream_of_or_within ISO
IEA 		MGI:1857219 (PMID:8565825)
GO_REF:0000107 		RGD
Ensembl		 PMID:8565825 GO_REF:0000107 NCBI chr 7:42,802,946...42,806,177
Ensembl chr 7:44,689,407...44,692,638 		JBrowse link
G Otor otoraplin involved_in
acts_upstream_of_or_within 		IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000107
(PMID:10998416) 		GO_Central
Ensembl
RGD		 PMID:10998416 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:130,415,339...130,418,601
Ensembl chr 3:150,868,886...150,872,141 		JBrowse link
G Pkd1 polycystin 1, transient receptor potential channel interacting acts_upstream_of_or_within ISO
IEA 		MGI:2152589 (PMID:11593033)
GO_REF:0000107 		RGD
Ensembl		 PMID:11593033 GO_REF:0000107 NCBI chr10:14,077,733...14,125,682
Ensembl chr10:14,078,679...14,125,681 		JBrowse link
G Ror2 receptor tyrosine kinase-like orphan receptor 2 acts_upstream_of_or_within ISO MGI:2183225 (PMID:14745966) RGD PMID:14745966 NCBI chr17:11,972,830...12,148,152
Ensembl chr17:12,124,749...12,300,044 		JBrowse link
G Sox5 SRY-box transcription factor 5 involved_in ISS
ISO 		GO_REF:0000024
(PMID:11702786), (PMID:14993235) 		UniProt
RGD		 PMID:11702786 PMID:14993235 GO_REF:0000024 NCBI chr 4:178,512,272...179,467,686
Ensembl chr 4:178,512,272...178,938,495 		JBrowse link
G Sox6 SRY-box transcription factor 6 involved_in ISS
ISO 		GO_REF:0000024
(PMID:11702786), (PMID:14993235) 		UniProt
RGD		 PMID:11702786 PMID:14993235 GO_REF:0000024 NCBI chr 1:179,157,678...179,769,243
Ensembl chr 1:179,163,566...179,711,727 		JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within 		ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
MGI:2158693|MGI:2385468 (PMID:10319868), (PMID:12414734) 		UniProt
Ensembl
RGD		 PMID:10319868 PMID:12414734 GO_REF:0000024 GO_REF:0000107 NCBI chr10:98,305,744...98,311,250
Ensembl chr10:98,305,744...98,311,250 		JBrowse link
G Sulf1 sulfatase 1 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 5:11,145,950...11,308,622
Ensembl chr 5:11,145,950...11,308,643 		JBrowse link
G Tgfb2 transforming growth factor, beta 2 acts_upstream_of_or_within ISO
IEA 		MGI:95518|MGI:95520 (PMID:8565825)
GO_REF:0000107 		RGD
Ensembl		 PMID:8565825 GO_REF:0000107 NCBI chr13:100,691,540...100,793,227
Ensembl chr13:100,692,953...100,792,856 		JBrowse link
G Thra thyroid hormone receptor alpha acts_upstream_of_or_within ISO MGI:1860442 (PMID:9250685) RGD PMID:9250685 NCBI chr10:83,701,885...83,729,408
Ensembl chr10:84,197,011...84,225,657 		JBrowse link
G Uncx UNC homeobox acts_upstream_of_or_within ISO
IEA 		MGI:1859373|MGI:1928812 (PMID:10804168), (PMID:10804169)
GO_REF:0000107 		RGD
Ensembl		 PMID:10804168 PMID:10804169 GO_REF:0000107 NCBI chr12:20,206,604...20,211,125
Ensembl chr12:20,206,609...20,211,125 		JBrowse link
G Wnt7a Wnt family member 7A involved_in ISO
IEA 		(PMID:17202865)
GO_REF:0000107 		RGD
Ensembl		 PMID:17202865 GO_REF:0000107 NCBI chr 4:125,420,276...125,466,149
Ensembl chr 4:125,420,276...125,466,149 		JBrowse link
cartilage development involved in endochondral bone morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cbs cystathionine beta synthase acts_upstream_of_or_within ISO
IEA 		MGI:1857139 (PMID:15622513)
GO_REF:0000107 		RGD
Ensembl		 PMID:15622513 GO_REF:0000107 NCBI chr20:9,709,394...9,733,925
Ensembl chr20:9,709,395...9,734,066 		JBrowse link
G Col1a1 collagen type I alpha 1 chain acts_upstream_of_or_within ISO
IEA 		MGI:3769585 (PMID:18248096)
GO_REF:0000107 		RGD
Ensembl		 PMID:18248096 GO_REF:0000107 NCBI chr10:80,380,458...80,397,461
Ensembl chr10:80,380,453...80,397,460 		JBrowse link
G Col2a1 collagen type II alpha 1 chain acts_upstream_of_or_within IEP
IEA
ISO 		mandibular condylar cartilage
GO_REF:0000107
MGI:1857275|MGI:2152978 (PMID:11680679), (PMID:8989518), (PMID:9022054) 		Ensembl
RGD		 PMID:8989518 PMID:9022054 PMID:11680679 PMID:12924823 GO_REF:0000107, RGD:8661659 NCBI chr 7:130,977,561...131,006,627
Ensembl chr 7:130,977,561...131,006,627 		JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO
IEA 		(PMID:21185280), (PMID:23958822)
GO_REF:0000107 		RGD
Ensembl		 PMID:21185280 PMID:23958822 GO_REF:0000107 NCBI chr 7:86,265,651...86,544,488
Ensembl chr 7:86,259,900...86,544,567 		JBrowse link
G Ghr growth hormone receptor IEP RGD PMID:15749813 RGD:2307373 NCBI chr 2:54,269,066...54,532,595
Ensembl chr 2:54,270,206...54,532,331 		JBrowse link
G Hoxa11 homeobox A11 acts_upstream_of_or_within ISO
IEA 		MGI:96203 (PMID:14668414)
GO_REF:0000107 		RGD
Ensembl		 PMID:14668414 GO_REF:0000107 NCBI chr 4:82,673,139...82,676,801
Ensembl chr 4:82,673,140...82,676,844 		JBrowse link
G Hoxd11 homeobox D11 acts_upstream_of_or_within ISO MGI:96172 (PMID:14668414) RGD PMID:14668414 NCBI chr 3:79,992,394...79,994,688
Ensembl chr 3:79,992,394...79,994,688 		JBrowse link
G Hspg2 heparan sulfate proteoglycan 2 acts_upstream_of_or_within ISO MGI:1934891 (PMID:10545953) RGD PMID:10545953 NCBI chr 5:154,960,818...155,061,971
Ensembl chr 5:154,960,846...155,061,971 		JBrowse link
G Shox2 SHOX homeobox 2 acts_upstream_of_or_within ISO
IEA 		MGI:3628798 (PMID:16537395)
GO_REF:0000107 		RGD
Ensembl		 PMID:16537395 GO_REF:0000107 NCBI chr 2:153,524,324...153,537,571
Ensembl chr 2:153,527,571...153,537,161 		JBrowse link
G Sik3 SIK family kinase 3 acts_upstream_of_or_within ISO
IEA 		MGI:5317918 (PMID:22318228)
GO_REF:0000107 		RGD
Ensembl		 PMID:22318228 GO_REF:0000107 NCBI chr 8:55,208,969...55,419,138
Ensembl chr 8:55,208,815...55,419,138 		JBrowse link
G Trpv4 transient receptor potential cation channel, subfamily V, member 4 involved_in ISO
IEA 		(PMID:26249260)
GO_REF:0000107 		RGD
Ensembl		 PMID:26249260 GO_REF:0000107 NCBI chr12:47,599,161...47,638,143
Ensembl chr12:47,599,035...47,638,143 		JBrowse link
chondrocyte development involved in endochondral bone morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Serpinh1 serpin family H member 1 acts_upstream_of_or_within ISO
IEA 		MGI:2176070|MGI:5505265 (PMID:22492985)
GO_REF:0000107 		RGD
Ensembl		 PMID:22492985 GO_REF:0000107 NCBI chr 1:163,055,630...163,063,177
Ensembl chr 1:163,055,630...163,062,976 		JBrowse link
G Smpd3 sphingomyelin phosphodiesterase 3 acts_upstream_of_or_within ISO
IEA 		MGI:1856877 (PMID:21788370)
GO_REF:0000107 		RGD
Ensembl		 PMID:21788370 GO_REF:0000107 NCBI chr19:51,072,209...51,155,639
Ensembl chr19:51,072,209...51,085,936 		JBrowse link
chondrocyte differentiation involved in endochondral bone morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Axin2 axin 2 acts_upstream_of_or_within ISO
IEA 		MGI:3579503 (PMID:19623616)
GO_REF:0000107 		RGD
Ensembl		 PMID:19623616 GO_REF:0000107 NCBI chr10:94,393,379...94,426,579
Ensembl chr10:94,395,909...94,426,575 		JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO (PMID:29545125) RGD PMID:29545125 NCBI chr 7:86,265,651...86,544,488
Ensembl chr 7:86,259,900...86,544,567 		JBrowse link
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within ISO
IEA 		(PMID:25639508)
GO_REF:0000107 		RGD
Ensembl		 PMID:25639508 GO_REF:0000107 NCBI chr 9:83,952,986...83,959,203
Ensembl chr 9:83,952,986...83,959,203 		JBrowse link
G Scube2 signal peptide, CUB domain and EGF like domain containing 2 acts_upstream_of_or_within ISO MGI:5698367 (PMID:25639508) RGD PMID:25639508 NCBI chr 1:163,831,876...163,899,925
Ensembl chr 1:173,264,865...173,334,372 		JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in ISO
IEA
ISS 		(PMID:20676705)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:20676705 GO_REF:0000024 GO_REF:0000107 NCBI chr10:98,305,744...98,311,250
Ensembl chr10:98,305,744...98,311,250 		JBrowse link
G Trip11 thyroid hormone receptor interactor 11 acts_upstream_of_or_within ISO
IEA 		MGI:4829605 (PMID:20089971)
GO_REF:0000107 		RGD
Ensembl		 PMID:20089971 GO_REF:0000107 NCBI chr 6:126,760,263...126,832,619
Ensembl chr 6:126,760,265...126,832,570 		JBrowse link
coronal suture morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO MGI:3603464 (PMID:19389359) RGD PMID:19389359 NCBI chr 1:194,175,703...194,280,914
Ensembl chr 1:194,175,705...194,280,914 		JBrowse link
cranial suture morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO
IEA 		(PMID:9477322)
GO_REF:0000107 		RGD
Ensembl		 PMID:9477322 GO_REF:0000107 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:22,098,470...22,105,172 		JBrowse link
G Fgf4 fibroblast growth factor 4 acts_upstream_of_or_within ISO
IEA 		(PMID:9477322)
GO_REF:0000107 		RGD
Ensembl		 PMID:9477322 GO_REF:0000107 NCBI chr 1:209,453,229...209,457,085
Ensembl chr 1:209,453,229...209,457,085 		JBrowse link
G Igf1 insulin-like growth factor 1 IEP RGD PMID:10597685 RGD:12910129 NCBI chr 7:24,169,608...24,249,446
Ensembl chr 7:24,130,137...24,246,764 		JBrowse link
G Insig1 insulin induced gene 1 acts_upstream_of_or_within ISO MGI:1920249 (PMID:16955138) RGD PMID:16955138 NCBI chr 4:8,049,339...8,057,812
Ensembl chr 4:8,049,556...8,057,778 		JBrowse link
G Insig2 insulin induced gene 2 acts_upstream_of_or_within ISO
IEA 		MGI:1916289 (PMID:16955138)
GO_REF:0000107 		RGD
Ensembl		 PMID:16955138 GO_REF:0000107 NCBI chr13:32,472,390...32,500,139
Ensembl chr13:35,025,164...35,047,658 		JBrowse link
G Twist1 twist family bHLH transcription factor 1 acts_upstream_of_or_within
involved_in 		ISO MGI:1857265|MGI:3038818 (PMID:12221714), (PMID:15030764)
(PMID:16502419) 		RGD PMID:12221714 PMID:15030764 PMID:16502419 NCBI chr 6:56,402,309...56,404,303
Ensembl chr 6:56,398,061...56,404,965 		JBrowse link
craniofacial suture morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxn3 forkhead box N3 acts_upstream_of_or_within ISO
IEA 		(PMID:20691664)
GO_REF:0000107 		RGD
Ensembl		 PMID:20691664 GO_REF:0000107 NCBI chr 6:118,462,018...118,842,442
Ensembl chr 6:124,195,701...124,572,040 		JBrowse link
G Frem1 Fras1 related extracellular matrix 1 involved_in ISO
IEA 		(PMID:21931569)
GO_REF:0000107 		RGD
Ensembl		 PMID:21931569 GO_REF:0000107 NCBI chr 5:97,321,266...97,469,523
Ensembl chr 5:102,367,201...102,515,404 		JBrowse link
G LOC100360522 ribosomal protein P1-like involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr17:8,431,634...8,432,745 JBrowse link
G Megf8 multiple EGF-like-domains 8 involved_in IEA
ISO 		GO_REF:0000107
(PMID:23063620) 		Ensembl
RGD		 PMID:23063620 GO_REF:0000107 NCBI chr 1:80,902,236...80,951,614
Ensembl chr 1:90,030,388...90,079,422 		JBrowse link
G Mmp14 matrix metallopeptidase 14 acts_upstream_of_or_within ISO
IEA 		MGI:1276107 (PMID:18022611)
GO_REF:0000107 		RGD
Ensembl		 PMID:18022611 GO_REF:0000107 NCBI chr15:31,857,824...31,867,049
Ensembl chr15:31,857,546...31,869,893 		JBrowse link
G Mmp16 matrix metallopeptidase 16 acts_upstream_of_or_within ISO
IEA 		MGI:101900 (PMID:18022611)
GO_REF:0000107 		RGD
Ensembl		 PMID:18022611 GO_REF:0000107 NCBI chr 5:31,312,280...31,556,276
Ensembl chr 5:36,109,265...36,353,252 		JBrowse link
G Neurog1 neurogenin 1 involved_in ISO
IEA 		UniProtKB:Q6ZNK6|UniProtKB:Q8TF63 (PMID:23419067)
GO_REF:0000107 		RGD
Ensembl		 PMID:23419067 GO_REF:0000107 NCBI chr17:8,362,878...8,364,397
Ensembl chr17:8,368,096...8,369,615 		JBrowse link
G Rab23 RAB23, member RAS oncogene family involved_in ISO
IEA 		(PMID:17503333)
GO_REF:0000107 		RGD
Ensembl		 PMID:17503333 GO_REF:0000107 NCBI chr 9:43,440,047...43,463,327
Ensembl chr 9:43,440,273...43,463,325 		JBrowse link
G Rplp1 ribosomal protein lateral stalk subunit P1 involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 8:62,394,008...62,395,341
Ensembl chr 8:71,289,535...71,290,872 		JBrowse link
G Tifab TIFA inhibitor involved_in ISO UniProtKB:Q8TF63|UniProtKB:Q92886 (PMID:23419067) RGD PMID:23419067 NCBI chr17:8,433,406...8,436,541
Ensembl chr17:8,433,862...8,444,360 		JBrowse link
G Tmem107 transmembrane protein 107 acts_upstream_of_or_within ISO MGI:5007367 (PMID:28954202) RGD PMID:28954202 NCBI chr10:54,268,218...54,273,520
Ensembl chr10:54,271,196...54,278,586 		JBrowse link
embryonic cranial skeleton morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO
IEA 		MGI:1857137 (PMID:9268572)
GO_REF:0000107 		RGD
Ensembl		 PMID:9268572 GO_REF:0000107 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:22,098,470...22,105,172 		JBrowse link
G Cdh11 cadherin 11 acts_upstream_of_or_within ISO MGI:3526861 (PMID:17143286) RGD PMID:17143286 NCBI chr19:2,152,961...2,312,140
Ensembl chr19:2,154,840...2,312,140 		JBrowse link
G Dlx2 distal-less homeobox 2 acts_upstream_of_or_within ISO
IEA 		MGI:1857828 (PMID:7590232)
GO_REF:0000107 		RGD
Ensembl		 PMID:7590232 GO_REF:0000107 NCBI chr 3:76,777,912...76,781,255
Ensembl chr 3:76,777,912...76,781,255 		JBrowse link
G Eif4a3 eukaryotic translation initiation factor 4A3 involved_in ISO
IEA
ISS 		(PMID:24360810)
GO_REF:0000107
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:24360810 GO_REF:0000024 GO_REF:0000107 NCBI chr10:104,549,038...104,559,032
Ensembl chr10:105,047,568...105,058,207 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 involved_in ISO
IEA 		(PMID:7874170), (PMID:7987400)
GO_REF:0000107 		RGD
Ensembl		 PMID:7874170 PMID:7987400 GO_REF:0000107 NCBI chr 1:194,175,703...194,280,914
Ensembl chr 1:194,175,705...194,280,914 		JBrowse link
G Foxc2 forkhead box C2 acts_upstream_of_or_within ISO MGI:1857865 (PMID:9106663) RGD PMID:9106663 NCBI chr19:66,094,718...66,097,420
Ensembl chr19:66,094,700...66,153,977 		JBrowse link
G Gas1 growth arrest-specific 1 acts_upstream_of_or_within ISO MGI:2388397|MGI:98297 (PMID:17525797) RGD PMID:17525797 NCBI chr17:4,487,716...4,490,701
Ensembl chr17:4,484,283...4,497,657 		JBrowse link
G Gnas GNAS complex locus acts_upstream_of_or_within ISO
IEA 		MGI:3043361 (PMID:15797856)
GO_REF:0000107 		RGD
Ensembl		 PMID:15797856 GO_REF:0000107 NCBI chr 3:183,489,648...183,554,570
Ensembl chr 3:183,503,243...183,554,536 		JBrowse link
G Grhl2 grainyhead-like transcription factor 2 acts_upstream_of_or_within ISO
IEA 		MGI:4942413 (PMID:21377456)
GO_REF:0000107 		RGD
Ensembl		 PMID:21377456 GO_REF:0000107 NCBI chr 7:70,280,360...70,415,277
Ensembl chr 7:70,285,310...70,415,274 		JBrowse link
G Ift140 intraflagellar transport 140 acts_upstream_of_or_within ISO
IEA 		MGI:4458412 (PMID:23469164)
GO_REF:0000107 		RGD
Ensembl		 PMID:23469164 GO_REF:0000107 NCBI chr10:14,537,134...14,624,926
Ensembl chr10:14,537,466...14,624,926 		JBrowse link
G Irx5 iroquois homeobox 5 involved_in ISO
IEA 		(PMID:22581230)
GO_REF:0000107 		RGD
Ensembl		 PMID:22581230 GO_REF:0000107 NCBI chr19:14,639,052...14,643,911
Ensembl chr19:30,797,202...30,815,029 		JBrowse link
G Mmp14 matrix metallopeptidase 14 acts_upstream_of_or_within ISO
IEA 		MGI:1276107 (PMID:18022611)
GO_REF:0000107 		RGD
Ensembl		 PMID:18022611 GO_REF:0000107 NCBI chr15:31,857,824...31,867,049
Ensembl chr15:31,857,546...31,869,893 		JBrowse link
G Mmp16 matrix metallopeptidase 16 acts_upstream_of_or_within ISO
IEA 		MGI:101900 (PMID:18022611)
GO_REF:0000107 		RGD
Ensembl		 PMID:18022611 GO_REF:0000107 NCBI chr 5:31,312,280...31,556,276
Ensembl chr 5:36,109,265...36,353,252 		JBrowse link
G Nipbl NIPBL, cohesin loading factor acts_upstream_of_or_within ISO
IEA 		MGI:4332250 (PMID:19763162)
GO_REF:0000107 		RGD
Ensembl		 PMID:19763162 GO_REF:0000107 NCBI chr 2:59,126,676...59,314,841
Ensembl chr 2:59,126,676...59,293,277 		JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO
IEA 		MGI:2158732 (PMID:11311163)
GO_REF:0000107 		RGD
Ensembl		 PMID:11311163 GO_REF:0000107 NCBI chr20:29,911,258...29,919,659
Ensembl chr20:29,911,258...29,919,659 		JBrowse link
G Pax5 paired box 5 acts_upstream_of_or_within ISO MGI:2386577 (PMID:23349049) RGD PMID:23349049 NCBI chr 5:58,763,334...58,945,719
Ensembl chr 5:63,560,722...63,739,987 		JBrowse link
G Pdgfra platelet derived growth factor receptor alpha involved_in IEA
ISO
IBA
ISS 		GO_REF:0000107
(PMID:9226440)
GO_REF:0000033
GO_REF:0000024 		Ensembl
RGD
GO_Central
UniProt		 PMID:9226440 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr14:33,360,027...33,408,604
Ensembl chr14:33,360,028...33,408,516 		JBrowse link
G Prrx1 paired related homeobox 1 acts_upstream_of_or_within ISO
IEA 		MGI:1857640|MGI:98218 (PMID:7758948), (PMID:9729491)
GO_REF:0000107 		RGD
Ensembl		 PMID:7758948 PMID:9729491 GO_REF:0000107 NCBI chr13:75,600,777...75,671,896
Ensembl chr13:78,136,783...78,204,058 		JBrowse link
G Prrx2 paired related homeobox 2 acts_upstream_of_or_within ISO MGI:97712 (PMID:9729491) RGD PMID:9729491 NCBI chr 3:14,132,574...14,168,533
Ensembl chr 3:34,520,173...34,566,284 		JBrowse link
G Runx2 RUNX family transcription factor 2 acts_upstream_of_or_within ISO MGI:104685|MGI:98872 (PMID:15030764) RGD PMID:15030764 NCBI chr 9:23,661,278...23,990,248
Ensembl chr 9:23,664,952...23,990,027 		JBrowse link
G Setd2 SET domain containing 2, histone lysine methyltransferase acts_upstream_of_or_within ISO MGI:4437211 (PMID:20133625) RGD PMID:20133625 NCBI chr 8:119,390,207...119,475,863
Ensembl chr 8:119,390,207...119,475,863 		JBrowse link
G Six1 SIX homeobox 1 acts_upstream_of_or_within
involved_in 		ISO
IEA 		MGI:106034 (PMID:20515681)
GO_REF:0000117
GO_REF:0000107 		RGD
UniProt
Ensembl		 PMID:20515681 GO_REF:0000107 GO_REF:0000117 NCBI chr 6:97,482,617...97,487,853
Ensembl chr 6:97,482,617...97,487,853 		JBrowse link
G Six2 SIX homeobox 2 acts_upstream_of_or_within
involved_in 		ISO
IEA 		MGI:3691857 (PMID:20515681)
GO_REF:0000117
GO_REF:0000107 		RGD
UniProt
Ensembl		 PMID:20515681 GO_REF:0000107 GO_REF:0000117 NCBI chr 6:14,727,756...14,734,219
Ensembl chr 6:14,727,859...14,731,941 		JBrowse link
G Six4 SIX homeobox 4 acts_upstream_of_or_within ISO MGI:102780 (PMID:20515681) RGD PMID:20515681 NCBI chr 6:97,538,202...97,551,872
Ensembl chr 6:97,538,202...97,551,872 		JBrowse link
G Slc39a1 solute carrier family 39 member 1 acts_upstream_of_or_within ISO
IEA 		MGI:2147269|MGI:3625131 (PMID:16652366)
GO_REF:0000107 		RGD
Ensembl		 PMID:16652366 GO_REF:0000107 NCBI chr 2:175,703,413...175,709,063
Ensembl chr 2:178,001,119...178,006,689 		JBrowse link
G Slc39a3 solute carrier family 39 member 3 acts_upstream_of_or_within ISO
IEA 		MGI:1353474 (PMID:16652366)
GO_REF:0000107 		RGD
Ensembl		 PMID:16652366 GO_REF:0000107 NCBI chr 7:9,327,541...9,333,542
Ensembl chr 7:9,327,455...9,335,845 		JBrowse link
G Smad2 SMAD family member 2 acts_upstream_of_or_within ISO MGI:1201674 (PMID:15183723) RGD PMID:15183723 NCBI chr18:72,124,792...72,193,345
Ensembl chr18:72,124,863...72,187,388 		JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of_or_within ISO
IEA 		MGI:108051 (PMID:15183723)
GO_REF:0000107 		RGD
Ensembl		 PMID:15183723 GO_REF:0000107 NCBI chr 8:73,022,204...73,132,324
Ensembl chr 8:73,024,760...73,132,324 		JBrowse link
G Tbx1 T-box transcription factor 1 involved_in
acts_upstream_of_or_within 		ISS
ISO 		GO_REF:0000024
MGI:2179191 (PMID:15190012) 		UniProt
RGD		 PMID:15190012 GO_REF:0000024 NCBI chr11:95,913,610...95,923,392
Ensembl chr11:95,913,610...95,923,392 		JBrowse link
G Tbx15 T-box transcription factor 15 acts_upstream_of_or_within ISO
IEA 		MGI:1856015 (PMID:15728667)
GO_REF:0000107 		RGD
Ensembl		 PMID:15728667 GO_REF:0000107 NCBI chr 2:189,265,373...189,376,466
Ensembl chr 2:189,265,373...189,376,466 		JBrowse link
G Tfap2a transcription factor AP-2 alpha involved_in
acts_upstream_of_or_within 		ISS
ISO 		GO_REF:0000024
(PMID:8622766)
MGI:1888387 (PMID:8622765) 		UniProt
RGD		 PMID:8622765 PMID:8622766 GO_REF:0000024 NCBI chr17:24,230,064...24,253,219
Ensembl chr17:24,229,910...24,253,219 		JBrowse link
G Tgfbr1 transforming growth factor, beta receptor 1 acts_upstream_of_or_within ISO
IEA 		MGI:2680164 (PMID:16806156)
GO_REF:0000107 		RGD
Ensembl		 PMID:16806156 GO_REF:0000107 NCBI chr 5:66,449,348...66,506,371
Ensembl chr 5:66,449,293...66,527,260 		JBrowse link
G Tgfbr2 transforming growth factor, beta receptor 2 involved_in ISO
IEA 		(PMID:12975342)
GO_REF:0000107 		RGD
Ensembl		 PMID:12975342 GO_REF:0000107 NCBI chr 8:124,672,677...124,761,741
Ensembl chr 8:124,674,986...124,761,469 		JBrowse link
G Twist1 twist family bHLH transcription factor 1 involved_in
acts_upstream_of_or_within 		ISO (PMID:8988166), (PMID:8988167)
(PMID:8988167)
MGI:99829 (PMID:15030764) 		RGD PMID:8988166 PMID:8988167 PMID:15030764 NCBI chr 6:56,402,309...56,404,303
Ensembl chr 6:56,398,061...56,404,965 		JBrowse link
G Twist2 twist family bHLH transcription factor 2 acts_upstream_of_or_within ISO MGI:99829 (PMID:15030764) RGD PMID:15030764 NCBI chr 9:99,822,242...99,866,722
Ensembl chr 9:99,818,962...99,920,270 		JBrowse link
G Wdr19 WD repeat domain 19 acts_upstream_of_or_within ISO
IEA 		MGI:5315747 (PMID:22228095)
GO_REF:0000107 		RGD
Ensembl		 PMID:22228095 GO_REF:0000107 NCBI chr14:43,396,130...43,460,012
Ensembl chr14:43,397,835...43,459,939 		JBrowse link
G Wnt9b Wnt family member 9B acts_upstream_of_or_within ISO MGI:1856821|MGI:3526437 (PMID:16054034), (PMID:16998816) RGD PMID:16054034 PMID:16998816 NCBI chr10:89,135,362...89,157,065
Ensembl chr10:89,135,363...89,157,065 		JBrowse link
embryonic neurocranium morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO
IEA 		MGI:1917550 (PMID:27395007)
GO_REF:0000107 		RGD
Ensembl		 PMID:27395007 GO_REF:0000107 NCBI chr 1:254,533,504...254,539,605
Ensembl chr 1:254,533,504...254,539,605 		JBrowse link
G Fuz fuzzy planar cell polarity protein acts_upstream_of_or_within ISO MGI:3531090|MGI:99604 (PMID:27395007) RGD PMID:27395007 NCBI chr 1:104,515,782...104,524,591
Ensembl chr 1:104,516,049...104,521,038 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO
IEA 		MGI:1856276 (PMID:27395007)
GO_REF:0000107 		RGD
Ensembl		 PMID:27395007 GO_REF:0000107 NCBI chr17:54,134,064...54,405,198
Ensembl chr17:54,134,064...54,405,198 		JBrowse link
G Hoxa1 homeobox A1 involved_in ISO (PMID:16155570) RGD PMID:16155570 NCBI chr 4:82,586,505...82,589,209
Ensembl chr 4:82,586,505...82,589,209 		JBrowse link
G Med12 mediator complex subunit 12 acts_upstream_of_or_within ISO
IEA 		MGI:4839485 (PMID:20589884)
GO_REF:0000107 		RGD
Ensembl		 PMID:20589884 GO_REF:0000107 NCBI chr  X:70,444,615...70,467,780
Ensembl chr  X:70,444,705...70,467,708 		JBrowse link
G Mthfd1l methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like involved_in ISO
IEA 		(PMID:23267094)
GO_REF:0000107 		RGD
Ensembl		 PMID:23267094 GO_REF:0000107 NCBI chr 1:40,443,926...40,632,911
Ensembl chr 1:42,849,374...43,038,309 		JBrowse link
G Ndst1 N-deacetylase and N-sulfotransferase 1 acts_upstream_of_or_within ISO
IEA 		MGI:3589383 (PMID:16020517)
GO_REF:0000107 		RGD
Ensembl		 PMID:16020517 GO_REF:0000107 NCBI chr18:54,136,887...54,199,545
Ensembl chr18:56,411,200...56,448,612 		JBrowse link
G Tgfb2 transforming growth factor, beta 2 IDA RGD PMID:11002343 RGD:1579866 NCBI chr13:100,691,540...100,793,227
Ensembl chr13:100,692,953...100,792,856 		JBrowse link
G Tgfb3 transforming growth factor, beta 3 IDA RGD PMID:11002343 RGD:1579866 NCBI chr 6:111,435,170...111,457,646
Ensembl chr 6:111,435,170...111,456,946 		JBrowse link
G Tulp3 TUB like protein 3 acts_upstream_of_or_within ISO
IEA 		MGI:2388066 (PMID:19286674)
GO_REF:0000107 		RGD
Ensembl		 PMID:19286674 GO_REF:0000107 NCBI chr 4:163,276,583...163,318,297
Ensembl chr 4:163,276,583...163,318,390 		JBrowse link
embryonic skeletal joint morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Axin1 axin 1 acts_upstream_of_or_within ISO MGI:1856035|MGI:1856036 RGD MGI:48782 NCBI chr10:15,667,894...15,720,092
Ensembl chr10:15,667,958...15,720,092 		JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO
IEA 		MGI:103302|MGI:1857137 (PMID:9664686)
GO_REF:0000107 		RGD
Ensembl		 PMID:9664686 GO_REF:0000107 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:22,098,470...22,105,172 		JBrowse link
G Bmp7 bone morphogenetic protein 7 acts_upstream_of_or_within ISO
IEA 		MGI:1934010|MGI:88180 (PMID:9664686)
GO_REF:0000107 		RGD
Ensembl		 PMID:9664686 GO_REF:0000107 NCBI chr 3:182,059,318...182,135,273
Ensembl chr 3:182,052,337...182,135,137 		JBrowse link
G Col2a1 collagen type II alpha 1 chain involved_in ISO
IEA 		(PMID:16752401)
GO_REF:0000107 		RGD
Ensembl		 PMID:16752401 GO_REF:0000107 NCBI chr 7:130,977,561...131,006,627
Ensembl chr 7:130,977,561...131,006,627 		JBrowse link
G Hoxa11 homeobox A11 acts_upstream_of_or_within
involved_in 		ISO
IEA
IBA 		MGI:96193|MGI:96203 (PMID:20978074)
GO_REF:0000117
GO_REF:0000107
GO_REF:0000033 		RGD
UniProt
Ensembl
GO_Central		 PMID:20978074 GO_REF:0000033 GO_REF:0000107 GO_REF:0000117 NCBI chr 4:82,673,139...82,676,801
Ensembl chr 4:82,673,140...82,676,844 		JBrowse link
G Hoxc11 homeobox C11 acts_upstream_of_or_within
involved_in 		ISO
IEA
IBA 		MGI:96172|MGI:96203 (PMID:20978074)
GO_REF:0000117
GO_REF:0000107
GO_REF:0000033 		RGD
UniProt
Ensembl
GO_Central		 PMID:20978074 GO_REF:0000033 GO_REF:0000107 GO_REF:0000117 NCBI chr 7:134,091,224...134,094,738
Ensembl chr 7:135,969,989...135,973,222 		JBrowse link
G Hoxd11 homeobox D11 acts_upstream_of_or_within
involved_in 		ISO
IEA
IBA 		MGI:96172|MGI:96193 (PMID:20978074)
GO_REF:0000117
GO_REF:0000033 		RGD
UniProt
GO_Central		 PMID:20978074 GO_REF:0000033 GO_REF:0000117 NCBI chr 3:79,992,394...79,994,688
Ensembl chr 3:79,992,394...79,994,688 		JBrowse link
G Hyal1 hyaluronidase 1 acts_upstream_of_or_within ISO
IEA 		MGI:2658730 (PMID:18772348)
GO_REF:0000107 		RGD
Ensembl		 PMID:18772348 GO_REF:0000107 NCBI chr 8:108,250,668...108,254,519
Ensembl chr 8:117,129,277...117,133,146 		JBrowse link
G Nog noggin involved_in ISO
IEA 		(PMID:16151340)
GO_REF:0000107 		RGD
Ensembl		 PMID:16151340 GO_REF:0000107 NCBI chr10:74,625,874...74,627,501
Ensembl chr10:74,625,875...74,628,103 		JBrowse link
G Osr1 odd-skipped related transcription factor 1 involved_in ISO
IEA 		UniProtKB:Q91ZD1 (PMID:21262216)
GO_REF:0000107 		RGD
Ensembl		 PMID:21262216 GO_REF:0000107 NCBI chr 6:38,088,688...38,100,010
Ensembl chr 6:38,093,011...38,100,021 		JBrowse link
G Osr2 odd-skipped related transcription factor 2 involved_in ISO
IEA 		(PMID:21262216)
GO_REF:0000107 		RGD
Ensembl		 PMID:21262216 GO_REF:0000107 NCBI chr 7:66,487,841...66,495,003
Ensembl chr 7:68,373,049...68,380,805 		JBrowse link
G Shox2 SHOX homeobox 2 acts_upstream_of_or_within ISO
IEA 		MGI:3626291 (PMID:18514492)
GO_REF:0000107 		RGD
Ensembl		 PMID:18514492 GO_REF:0000107 NCBI chr 2:153,524,324...153,537,571
Ensembl chr 2:153,527,571...153,537,161 		JBrowse link
embryonic skeletal limb joint morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnb1 catenin beta 1 involved_in IEA
ISO 		GO_REF:0000107
UniProtKB:Q91ZD1 (PMID:21262216) 		Ensembl
RGD		 PMID:21262216 GO_REF:0000107 NCBI chr 8:129,517,576...129,544,661
Ensembl chr 8:129,517,545...129,544,662 		JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO (PMID:21185280) RGD PMID:21185280 NCBI chr 7:86,265,651...86,544,488
Ensembl chr 7:86,259,900...86,544,567 		JBrowse link
G Osr1 odd-skipped related transcription factor 1 involved_in ISO
IEA 		UniProtKB:Q91ZD1 (PMID:21262216)
GO_REF:0000107 		RGD
Ensembl		 PMID:21262216 GO_REF:0000107 NCBI chr 6:38,088,688...38,100,010
Ensembl chr 6:38,093,011...38,100,021 		JBrowse link
G Osr2 odd-skipped related transcription factor 2 involved_in ISO
IEA 		UniProtKB:Q9WVG7 (PMID:21262216)
GO_REF:0000107 		RGD
Ensembl		 PMID:21262216 GO_REF:0000107 NCBI chr 7:66,487,841...66,495,003
Ensembl chr 7:68,373,049...68,380,805 		JBrowse link
embryonic skeletal system morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alx1 ALX homeobox 1 acts_upstream_of_or_within
involved_in 		ISO
IEA
IBA 		MGI:108359 (PMID:15728667), (PMID:9847249)
GO_REF:0000107
GO_REF:0000033 		RGD
Ensembl
GO_Central		 PMID:9847249 PMID:15728667 GO_REF:0000033 GO_REF:0000107 NCBI chr 7:38,157,626...38,177,220
Ensembl chr 7:40,033,676...40,063,778 		JBrowse link
G Alx3 ALX homeobox 3 acts_upstream_of_or_within ISO
IEA 		MGI:108359 (PMID:11641221), (PMID:15728667)
GO_REF:0000107 		RGD
Ensembl		 PMID:11641221 PMID:15728667 GO_REF:0000107 NCBI chr 2:197,919,381...197,929,795
Ensembl chr 2:197,919,381...197,929,795 		JBrowse link
G Alx4 ALX homeobox 4 acts_upstream_of_or_within ISO
IEA 		MGI:104621|MGI:1277097|MGI:1856069 (PMID:11641221), (PMID:15728667), (PMID:9847249)
GO_REF:0000107 		RGD
Ensembl		 PMID:9847249 PMID:11641221 PMID:15728667 GO_REF:0000107 NCBI chr 3:79,611,682...79,648,260
Ensembl chr 3:100,067,052...100,103,624 		JBrowse link
G Asxl2 ASXL transcriptional regulator 2 acts_upstream_of_or_within ISO MGI:3840841 (PMID:19270745) RGD PMID:19270745 NCBI chr 6:26,425,017...26,514,899
Ensembl chr 6:32,145,607...32,227,851 		JBrowse link
G Bmi1 BMI1 proto-oncogene, polycomb ring finger acts_upstream_of_or_within
involved_in 		ISO
IEA 		MGI:99161 (PMID:11290297)
GO_REF:0000117
GO_REF:0000107 		RGD
UniProt
Ensembl		 PMID:11290297 GO_REF:0000107 GO_REF:0000117 NCBI chr17:86,240,683...86,250,044
Ensembl chr17:86,243,491...86,250,024 		JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO
IEA 		MGI:2158495 (PMID:16712836)
GO_REF:0000107 		RGD
Ensembl		 PMID:16712836 GO_REF:0000107 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:22,098,470...22,105,172 		JBrowse link
G Chst11 carbohydrate sulfotransferase 11 acts_upstream_of_or_within ISO MGI:3768254 (PMID:16079159) RGD PMID:16079159 NCBI chr 7:20,524,535...20,743,008
Ensembl chr 7:22,415,686...22,630,441 		JBrowse link
G Col11a1 collagen type XI alpha 1 chain acts_upstream_of_or_within ISO MGI:1856399 (PMID:4100752) RGD PMID:4100752 NCBI chr 2:204,509,136...204,702,264
Ensembl chr 2:204,509,136...204,702,264 		JBrowse link
G Dlg1 discs large MAGUK scaffold protein 1 acts_upstream_of_or_within ISO
IEA 		MGI:2680670 (PMID:11238884)
GO_REF:0000107 		RGD
Ensembl		 PMID:11238884 GO_REF:0000107 NCBI chr11:82,416,853...82,607,797
Ensembl chr11:82,416,853...82,607,797 		JBrowse link
G Dscaml1 DS cell adhesion molecule-like 1 involved_in ISO
IEA 		(PMID:12051741)
GO_REF:0000107 		RGD
Ensembl		 PMID:12051741 GO_REF:0000107 NCBI chr 8:45,740,298...46,057,322
Ensembl chr 8:54,636,932...54,954,040 		JBrowse link
G Dync2i1 dynein 2 intermediate chain 1 involved_in ISO
IEA 		(PMID:23910462)
GO_REF:0000107 		RGD
Ensembl		 PMID:23910462 GO_REF:0000107 NCBI chr 6:137,133,418...137,189,937
Ensembl chr 6:143,276,441...143,331,773 		JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 acts_upstream_of_or_within ISO MGI:2150426 (PMID:10471511) RGD PMID:10471511 NCBI chr 5:9,646,599...9,884,609
Ensembl chr 5:9,646,591...9,884,614 		JBrowse link
G Flvcr1 FLVCR choline and heme transporter 1 acts_upstream_of_or_within ISO
IEA 		MGI:5474636 (PMID:23187127)
GO_REF:0000107 		RGD
Ensembl		 PMID:23187127 GO_REF:0000107 NCBI chr13:102,586,263...102,608,647
Ensembl chr13:105,117,402...105,139,759 		JBrowse link
G Foxc2 forkhead box C2 acts_upstream_of_or_within ISO MGI:1857740 (PMID:9409679) RGD PMID:9409679 NCBI chr19:66,094,718...66,097,420
Ensembl chr19:66,094,700...66,153,977 		JBrowse link
G Fuz fuzzy planar cell polarity protein involved_in ISS
ISO 		GO_REF:0000024
(PMID:19767740), (PMID:21935430), (PMID:23806618) 		UniProt
RGD		 PMID:19767740 PMID:21935430 PMID:23806618 GO_REF:0000024 NCBI chr 1:104,515,782...104,524,591
Ensembl chr 1:104,516,049...104,521,038 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO
IEA 		MGI:1277234 (PMID:15728667)
GO_REF:0000107 		RGD
Ensembl		 PMID:15728667 GO_REF:0000107 NCBI chr17:54,134,064...54,405,198
Ensembl chr17:54,134,064...54,405,198 		JBrowse link
G Gsc goosecoid homeobox acts_upstream_of_or_within ISO
IEA 		MGI:1857496|MGI:1857726 (PMID:7555718), (PMID:7555726)
GO_REF:0000107 		RGD
Ensembl		 PMID:7555718 PMID:7555726 GO_REF:0000107 NCBI chr 6:123,388,072...123,390,111
Ensembl chr 6:129,152,836...129,154,875 		JBrowse link
G Hoxa2 homeobox A2 acts_upstream_of_or_within ISO
IEA 		MGI:102778 (PMID:15634706)
GO_REF:0000107 		RGD
Ensembl		 PMID:15634706 GO_REF:0000107 NCBI chr 4:82,593,389...82,597,589
Ensembl chr 4:82,593,389...82,595,692 		JBrowse link
G Hoxa3 homeobox A3 involved_in
acts_upstream_of_or_within 		IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000117
GO_REF:0000107
MGI:96184|MGI:96207 (PMID:9441667) 		GO_Central
UniProt
Ensembl
RGD		 PMID:9441667 GO_REF:0000033 GO_REF:0000107 GO_REF:0000117 NCBI chr 4:81,269,243...81,313,218
Ensembl chr 4:82,599,860...82,643,831 		JBrowse link
G Hoxa4 homeo box A4 acts_upstream_of_or_within ISO MGI:2150391|MGI:96185|MGI:96208 (PMID:7628700), (PMID:7918106) RGD PMID:7628700 PMID:7918106 NCBI chr 4:81,289,677...81,291,685
Ensembl chr 4:82,620,299...82,622,302 		JBrowse link
G Hoxa5 homeo box A5 acts_upstream_of_or_within ISO MGI:2150397|MGI:3723623 (PMID:17417799), (PMID:7901120), (PMID:9603431) RGD PMID:7901120 PMID:9603431 PMID:17417799 NCBI chr 4:82,632,958...82,636,851
Ensembl chr 4:82,632,306...82,639,038 		JBrowse link
G Hoxa7 homeobox A7 acts_upstream_of_or_within
involved_in 		ISO
IEA 		MGI:96188 (PMID:9784603)
GO_REF:0000117
GO_REF:0000107 		RGD
UniProt
Ensembl		 PMID:9784603 GO_REF:0000107 GO_REF:0000117 NCBI chr 4:81,315,730...81,317,629
Ensembl chr 4:82,646,364...82,648,241 		JBrowse link
G Hoxa9 homeobox A9 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 4:82,653,847...82,659,958
Ensembl chr 4:82,653,825...82,662,093 		JBrowse link
G Hoxb1 homeo box B1 acts_upstream_of_or_within ISO
IEA 		MGI:96183|MGI:96184|MGI:96185|MGI:96186|MGI:96187|MGI:96188|MGI:96189|MGI:96190 (PMID:10885747)
GO_REF:0000107 		RGD
Ensembl		 PMID:10885747 GO_REF:0000107 NCBI chr10:81,827,915...81,830,404
Ensembl chr10:81,827,915...81,830,404 		JBrowse link
G Hoxb2 homeobox B2 acts_upstream_of_or_within ISO
IEA 		MGI:96182|MGI:96184|MGI:96185|MGI:96186|MGI:96187|MGI:96188|MGI:96189|MGI:96190 (PMID:10885747)
GO_REF:0000107 		RGD
Ensembl		 PMID:10885747 GO_REF:0000107 NCBI chr10:81,317,828...81,320,220
Ensembl chr10:81,814,340...81,816,726 		JBrowse link
G Hoxb3 homeo box B3 involved_in
acts_upstream_of_or_within 		IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000107
MGI:2151773|MGI:96175|MGI:96182|MGI:96183|MGI:96185|MGI:96186|MGI:96187|MGI:96188|MGI:96189|MGI:96190|MGI:96207 (PMID:10885747), (PMID:9441667) 		GO_Central
Ensembl
RGD		 PMID:9441667 PMID:10885747 GO_REF:0000033 GO_REF:0000107 NCBI chr10:81,786,001...81,810,655
Ensembl chr10:81,795,882...81,809,628 		JBrowse link
G Hoxb4 homeo box B4 acts_upstream_of_or_within ISO
IEA 		MGI:96176|MGI:96183|MGI:96184|MGI:96186|MGI:96187|MGI:96188|MGI:96189|MGI:96190 (PMID:10885747), (PMID:7628700)
GO_REF:0000107 		RGD
Ensembl		 PMID:7628700 PMID:10885747 GO_REF:0000107 NCBI chr10:81,284,552...81,287,134
Ensembl chr10:81,781,090...81,783,666 		JBrowse link
G Hoxb5 homeo box B5 acts_upstream_of_or_within ISO MGI:96182|MGI:96183|MGI:96184|MGI:96185|MGI:96187|MGI:96188|MGI:96189|MGI:96190 (PMID:10885747), (PMID:7828847) RGD PMID:7828847 PMID:10885747 NCBI chr10:81,765,911...81,768,119 JBrowse link
G Hoxb6 homeo box B6 acts_upstream_of_or_within
involved_in 		ISO
IEA 		MGI:96182|MGI:96183|MGI:96184|MGI:96185|MGI:96186|MGI:96188|MGI:96189|MGI:96190 (PMID:10885747)
GO_REF:0000117 		RGD
UniProt		 PMID:10885747 GO_REF:0000117 NCBI chr10:81,258,726...81,267,458 JBrowse link
G Hoxb7 homeo box B7 acts_upstream_of_or_within
involved_in 		ISO
IEA 		MGI:2150401|MGI:96179|MGI:96182|MGI:96183|MGI:96184|MGI:96185|MGI:96186|MGI:96187|MGI:96189|MGI:96190 (PMID:10885747), (PMID:9784603)
GO_REF:0000117
GO_REF:0000107 		RGD
UniProt
Ensembl		 PMID:9784603 PMID:10885747 GO_REF:0000107 GO_REF:0000117 NCBI chr10:81,749,159...81,752,577
Ensembl chr10:81,749,097...81,752,550 		JBrowse link
G Hoxb8 homeo box B8 acts_upstream_of_or_within ISO MGI:1934178|MGI:96182|MGI:96183|MGI:96184|MGI:96185|MGI:96186|MGI:96187|MGI:96188|MGI:96190 (PMID:10559485), (PMID:10885747) RGD PMID:10559485 PMID:10885747 NCBI chr10:81,248,313...81,251,261
Ensembl chr10:81,739,704...81,747,802 		JBrowse link
G Hoxb9 homeo box B9 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:81,733,857...81,737,363
Ensembl chr10:81,733,658...81,738,872 		JBrowse link
G Hoxc9 homeobox C9 acts_upstream_of_or_within ISO
IEA 		MGI:2150685 (PMID:7547473)
GO_REF:0000107 		RGD
Ensembl		 PMID:7547473 GO_REF:0000107 NCBI chr 7:134,118,817...134,121,497
Ensembl chr 7:135,992,023...135,999,964 		JBrowse link
G Hoxd10 homeo box D10 acts_upstream_of_or_within ISO
IEA 		MGI:96210 (PMID:10642795)
GO_REF:0000107 		RGD
Ensembl		 PMID:10642795 GO_REF:0000107 NCBI chr 3:59,594,516...59,597,725
Ensembl chr 3:80,001,689...80,005,156 		JBrowse link
G Hoxd3 homeo box D3 acts_upstream_of_or_within
involved_in 		ISO
IEA 		MGI:1857959|MGI:96175 (PMID:7910549), (PMID:7913519)
GO_REF:0000117
GO_REF:0000107 		RGD
UniProt
Ensembl		 PMID:7910549 PMID:7913519 GO_REF:0000107 GO_REF:0000117 NCBI chr 3:80,041,598...80,057,700
Ensembl chr 3:80,046,126...80,057,700 		JBrowse link
G Hoxd4 homeo box D4 involved_in
acts_upstream_of_or_within 		IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000107
MGI:2151488|MGI:96176 (PMID:7628700), (PMID:7750651) 		GO_Central
Ensembl
RGD		 PMID:7628700 PMID:7750651 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:80,021,886...80,041,462
Ensembl chr 3:80,036,900...80,038,948 		JBrowse link
G Hoxd9 homeo box D9 involved_in
acts_upstream_of_or_within 		IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000107
MGI:96202 (PMID:10642795) 		GO_Central
Ensembl
RGD		 PMID:10642795 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:59,600,575...59,602,755
Ensembl chr 3:80,007,668...80,010,171 		JBrowse link
G Hspg2 heparan sulfate proteoglycan 2 acts_upstream_of_or_within ISO MGI:1934892 (PMID:10579729) RGD PMID:10579729 NCBI chr 5:154,960,818...155,061,971
Ensembl chr 5:154,960,846...155,061,971 		JBrowse link
G LOC134479587 polycomb group RING finger protein 2-like involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117
G Mdfi MyoD family inhibitor acts_upstream_of_or_within ISO
IEA 		MGI:2155446 (PMID:9799236)
GO_REF:0000107 		RGD
Ensembl		 PMID:9799236 GO_REF:0000107 NCBI chr 9:13,156,806...13,175,218
Ensembl chr 9:20,654,417...20,672,767 		JBrowse link
G Mef2c myocyte enhancer factor 2C acts_upstream_of_or_within ISO MGI:3603182 (PMID:17420000) RGD PMID:17420000 NCBI chr 2:15,708,732...15,871,639
Ensembl chr 2:15,708,924...15,871,640 		JBrowse link
G Megf8 multiple EGF-like-domains 8 involved_in ISS
ISO
IEA 		GO_REF:0000024
(PMID:24052814)
GO_REF:0000107 		CAFA
RGD
Ensembl		 PMID:24052814 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:80,902,236...80,951,614
Ensembl chr 1:90,030,388...90,079,422 		JBrowse link
G Men1 menin 1 acts_upstream_of_or_within ISO MGI:2683274|MGI:3573783 (PMID:17927973) RGD PMID:17927973 NCBI chr 1:213,068,166...213,074,132
Ensembl chr 1:213,068,166...213,074,120 		JBrowse link
G Mycn MYCN proto-oncogene, bHLH transcription factor acts_upstream_of_or_within ISO
IEA 		(PMID:17360777)
GO_REF:0000107 		RGD
Ensembl		 PMID:17360777 GO_REF:0000107 NCBI chr 6:41,446,683...41,452,584
Ensembl chr 6:41,446,684...41,452,508 		JBrowse link
G Myf5 myogenic factor 5 acts_upstream_of_or_within ISO
IEA 		MGI:1857219 (PMID:10929709)
GO_REF:0000107 		RGD
Ensembl		 PMID:10929709 GO_REF:0000107 NCBI chr 7:42,802,946...42,806,177
Ensembl chr 7:44,689,407...44,692,638 		JBrowse link
G Osr2 odd-skipped related transcription factor 2 involved_in
acts_upstream_of_or_within 		ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
MGI:3033240 (PMID:15175245) 		UniProt
Ensembl
RGD		 PMID:15175245 GO_REF:0000024 GO_REF:0000107 NCBI chr 7:66,487,841...66,495,003
Ensembl chr 7:68,373,049...68,380,805 		JBrowse link
G Pcgf2 polycomb group ring finger 2 acts_upstream_of_or_within
involved_in 		ISO
IEA 		MGI:88174 (PMID:11290297)
GO_REF:0000117 		RGD
UniProt		 PMID:11290297 GO_REF:0000117 NCBI chr10:82,682,563...82,694,563
Ensembl chr10:83,179,916...83,183,999 		JBrowse link
G Pdgfra platelet derived growth factor receptor alpha involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr14:33,360,027...33,408,604
Ensembl chr14:33,360,028...33,408,516 		JBrowse link
G Pds5a PDS5 cohesin associated factor A acts_upstream_of_or_within ISO MGI:3847257 (PMID:19412548) RGD PMID:19412548 NCBI chr14:42,551,653...42,651,074
Ensembl chr14:42,905,328...43,004,740 		JBrowse link
G Prrx1 paired related homeobox 1 acts_upstream_of_or_within ISO
IEA 		MGI:1857640|MGI:98218 (PMID:11532916), (PMID:7758948), (PMID:9729491), (PMID:9876178)
GO_REF:0000107 		RGD
Ensembl		 PMID:7758948 PMID:9729491 PMID:9876178 PMID:11532916 GO_REF:0000107 NCBI chr13:75,600,777...75,671,896
Ensembl chr13:78,136,783...78,204,058 		JBrowse link
G Prrx2 paired related homeobox 2 acts_upstream_of_or_within ISO MGI:97712 (PMID:11532916), (PMID:9729491), (PMID:9876178) RGD PMID:9729491 PMID:9876178 PMID:11532916 NCBI chr 3:14,132,574...14,168,533
Ensembl chr 3:34,520,173...34,566,284 		JBrowse link
G Satb2 SATB homeobox 2 acts_upstream_of_or_within ISO
IEA 		MGI:3692768|MGI:3695425 (PMID:16751105), (PMID:16960803)
GO_REF:0000107 		RGD
Ensembl		 PMID:16751105 PMID:16960803 GO_REF:0000107 NCBI chr 9:58,348,027...58,534,256
Ensembl chr 9:65,844,570...66,021,238 		JBrowse link
G Six1 SIX homeobox 1 acts_upstream_of_or_within ISO
IEA 		MGI:106034 (PMID:15788460)
GO_REF:0000107 		RGD
Ensembl		 PMID:15788460 GO_REF:0000107 NCBI chr 6:97,482,617...97,487,853
Ensembl chr 6:97,482,617...97,487,853 		JBrowse link
G Six2 SIX homeobox 2 acts_upstream_of_or_within ISO
IEA 		MGI:96174 (PMID:15634706)
GO_REF:0000107 		RGD
Ensembl		 PMID:15634706 GO_REF:0000107 NCBI chr 6:14,727,756...14,734,219
Ensembl chr 6:14,727,859...14,731,941 		JBrowse link
G Six4 SIX homeobox 4 acts_upstream_of_or_within ISO MGI:102780 (PMID:15788460) RGD PMID:15788460 NCBI chr 6:97,538,202...97,551,872
Ensembl chr 6:97,538,202...97,551,872 		JBrowse link
G Sox11 SRY-box transcription factor 11 involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:15254231) 		UniProt
Ensembl
RGD		 PMID:15254231 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:44,008,333...44,010,354
Ensembl chr 6:49,736,304...49,738,691 		JBrowse link
G Tbx15 T-box transcription factor 15 acts_upstream_of_or_within ISO
IEA 		MGI:1856015|MGI:95729 (PMID:15728667)
GO_REF:0000107 		RGD
Ensembl		 PMID:15728667 GO_REF:0000107 NCBI chr 2:189,265,373...189,376,466
Ensembl chr 2:189,265,373...189,376,466 		JBrowse link
G Twist1 twist family bHLH transcription factor 1 acts_upstream_of_or_within ISO MGI:3038818 (PMID:15030764) RGD PMID:15030764 NCBI chr 6:56,402,309...56,404,303
Ensembl chr 6:56,398,061...56,404,965 		JBrowse link
G Wnt9a Wnt family member 9A acts_upstream_of_or_within
involved_in 		ISO
IEA 		MGI:3701350 (PMID:16818445)
GO_REF:0000117 		RGD
UniProt		 PMID:16818445 GO_REF:0000117 NCBI chr10:44,593,691...44,620,682
Ensembl chr10:44,593,691...44,620,682 		JBrowse link
G Wnt9b Wnt family member 9B involved_in IEA GO_REF:0000117 UniProt GO_REF:0000117 NCBI chr10:89,135,362...89,157,065
Ensembl chr10:89,135,363...89,157,065 		JBrowse link
G Zeb1 zinc finger E-box binding homeobox 1 acts_upstream_of_or_within ISO MGI:1857799 (PMID:9389660) RGD PMID:9389660 NCBI chr17:56,644,397...56,811,155
Ensembl chr17:56,644,397...56,810,745 		JBrowse link
embryonic viscerocranium morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chst11 carbohydrate sulfotransferase 11 acts_upstream_of_or_within ISO MGI:3768254 (PMID:16079159) RGD PMID:16079159 NCBI chr 7:20,524,535...20,743,008
Ensembl chr 7:22,415,686...22,630,441 		JBrowse link
G Foxc2 forkhead box C2 acts_upstream_of_or_within ISO MGI:1857740 (PMID:9409679) RGD PMID:9409679 NCBI chr19:66,094,718...66,097,420
Ensembl chr19:66,094,700...66,153,977 		JBrowse link
G Hoxa2 homeobox A2 acts_upstream_of_or_within ISO
IEA 		MGI:2385711 (PMID:16221728)
GO_REF:0000107 		RGD
Ensembl		 PMID:16221728 GO_REF:0000107 NCBI chr 4:82,593,389...82,597,589
Ensembl chr 4:82,593,389...82,595,692 		JBrowse link
G Lhx1 LIM homeobox 1 involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:14695376) 		UniProt
Ensembl
RGD		 PMID:14695376 GO_REF:0000024 GO_REF:0000107 NCBI chr10:69,894,288...69,901,076
Ensembl chr10:69,894,288...69,901,076 		JBrowse link
G Mef2c myocyte enhancer factor 2C acts_upstream_of_or_within ISO MGI:3603182 (PMID:17420000) RGD PMID:17420000 NCBI chr 2:15,708,732...15,871,639
Ensembl chr 2:15,708,924...15,871,640 		JBrowse link
G Mthfd1l methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like involved_in ISO
IEA 		(PMID:23267094)
GO_REF:0000107 		RGD
Ensembl		 PMID:23267094 GO_REF:0000107 NCBI chr 1:40,443,926...40,632,911
Ensembl chr 1:42,849,374...43,038,309 		JBrowse link
G Ndst1 N-deacetylase and N-sulfotransferase 1 acts_upstream_of_or_within ISO
IEA 		MGI:3589383 (PMID:16020517)
GO_REF:0000107 		RGD
Ensembl		 PMID:16020517 GO_REF:0000107 NCBI chr18:54,136,887...54,199,545
Ensembl chr18:56,411,200...56,448,612 		JBrowse link
G Nipbl NIPBL, cohesin loading factor involved_in
acts_upstream_of_or_within 		IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000107
MGI:4332250 (PMID:19763162) 		GO_Central
Ensembl
RGD		 PMID:19763162 GO_REF:0000033 GO_REF:0000107 NCBI chr 2:59,126,676...59,314,841
Ensembl chr 2:59,126,676...59,293,277 		JBrowse link
G Rdh10 retinol dehydrogenase 10 acts_upstream_of_or_within ISO
IEA 		(PMID:17473173)
GO_REF:0000107 		RGD
Ensembl		 PMID:17473173 GO_REF:0000107 NCBI chr 5:7,969,931...7,998,834
Ensembl chr 5:7,971,705...7,999,019 		JBrowse link
G Tbx1 T-box transcription factor 1 involved_in ISS
ISO 		GO_REF:0000024
(PMID:14585638) 		UniProt
RGD		 PMID:14585638 GO_REF:0000024 NCBI chr11:95,913,610...95,923,392
Ensembl chr11:95,913,610...95,923,392 		JBrowse link
endochondral bone morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmpr2 bone morphogenetic protein receptor type 2 involved_in ISS GO_REF:0000024 AgBase GO_REF:0000024 NCBI chr 9:68,685,942...68,801,353
Ensembl chr 9:68,685,988...68,801,350 		JBrowse link
G Carm1 coactivator-associated arginine methyltransferase 1 acts_upstream_of_or_within ISO MGI:2663959 (PMID:19725955) RGD PMID:19725955 NCBI chr 8:28,373,370...28,418,056
Ensembl chr 8:28,373,362...28,418,056 		JBrowse link
G Col3a1 collagen type III alpha 1 chain involved_in ISO MGI:1860700 (PMID:17960558) RGD PMID:17960558 NCBI chr 9:54,866,646...54,902,578
Ensembl chr 9:54,866,632...54,903,232 		JBrowse link
G Dspp dentin sialophosphoprotein acts_upstream_of_or_within ISO MGI:2653208 (PMID:26972716) RGD PMID:26972716 NCBI chr14:5,870,232...5,876,339
Ensembl chr14:5,870,232...5,876,339 		JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO MGI:1857079 (PMID:22359666) RGD PMID:22359666 NCBI chr 1:22,518,051...22,583,044
Ensembl chr 1:22,518,069...22,583,044 		JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within IEA
ISO 		GO_REF:0000107
MGI:108050 (PMID:21185280), (PMID:21310272), (PMID:29545125) 		Ensembl
RGD		 PMID:21185280 PMID:21310272 PMID:29545125 GO_REF:0000107 NCBI chr 7:86,265,651...86,544,488
Ensembl chr 7:86,259,900...86,544,567 		JBrowse link
G Ext2 exostosin glycosyltransferase 2 acts_upstream_of_or_within ISO
IEA 		MGI:894663 (PMID:21310272)
GO_REF:0000107 		RGD
Ensembl		 PMID:21310272 GO_REF:0000107 NCBI chr 3:79,665,414...79,798,077
Ensembl chr 3:100,120,776...100,253,596 		JBrowse link
G Ihh Indian hedgehog signaling molecule involved_in ISO (PMID:10465785), (PMID:10631175) RGD PMID:10465785 PMID:10631175 NCBI chr 9:83,952,986...83,959,203
Ensembl chr 9:83,952,986...83,959,203 		JBrowse link
G Sox9 SRY-box transcription factor 9 acts_upstream_of_or_within ISO
IEA 		MGI:2158693 (PMID:11371614)
GO_REF:0000107 		RGD
Ensembl		 PMID:11371614 GO_REF:0000107 NCBI chr10:98,305,744...98,311,250
Ensembl chr10:98,305,744...98,311,250 		JBrowse link
endochondral ossification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alpl alkaline phosphatase, biomineralization associated acts_upstream_of_or_within ISO
IEA 		MGI:2183411 (PMID:20684022)
GO_REF:0000107 		RGD
Ensembl		 PMID:20684022 GO_REF:0000107 NCBI chr 5:155,234,770...155,289,785
Ensembl chr 5:155,234,775...155,254,167 		JBrowse link
G Bmp4 bone morphogenetic protein 4 involved_in ISS
ISO
IEA 		GO_REF:0000024
(PMID:20059955)
GO_REF:0000107 		UniProt
RGD
Ensembl		 PMID:20059955 GO_REF:0000024 GO_REF:0000107 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:22,098,470...22,105,172 		JBrowse link
G Bmp6 bone morphogenetic protein 6 acts_upstream_of_or_within ISO
IEA 		MGI:2136985 (PMID:9664685)
GO_REF:0000107 		RGD
Ensembl		 PMID:9664685 GO_REF:0000107 NCBI chr17:26,523,704...26,785,558
Ensembl chr17:26,523,704...26,675,261 		JBrowse link
G Bpnt2 3'(2'), 5'-bisphosphate nucleotidase 2 acts_upstream_of_or_within ISO MGI:3806990 (PMID:18539921) RGD PMID:18539921 NCBI chr 5:17,775,684...17,802,570
Ensembl chr 5:22,570,165...22,600,126 		JBrowse link
G Cbs cystathionine beta synthase acts_upstream_of_or_within ISO
IEA 		MGI:1857139 (PMID:15622513)
GO_REF:0000107 		RGD
Ensembl		 PMID:15622513 GO_REF:0000107 NCBI chr20:9,709,394...9,733,925
Ensembl chr20:9,709,395...9,734,066 		JBrowse link
G Col10a1 collagen type X alpha 1 chain IMP RGD PMID:10853827 RGD:704421 NCBI chr20:38,183,103...38,189,488
Ensembl chr20:39,716,822...39,751,440 		JBrowse link
G Col13a1 collagen type XIII alpha 1 chain involved_in ISO
IEA 		(PMID:11470398)
GO_REF:0000107 		RGD
Ensembl		 PMID:11470398 GO_REF:0000107 NCBI chr20:29,783,965...29,924,116
Ensembl chr20:30,326,744...30,466,800 		JBrowse link
G Col1a1 collagen type I alpha 1 chain acts_upstream_of_or_within ISO
IEA 		MGI:1856671 (PMID:8130375)
GO_REF:0000107 		RGD
Ensembl		 PMID:8130375 GO_REF:0000107 NCBI chr10:80,380,458...80,397,461
Ensembl chr10:80,380,453...80,397,460 		JBrowse link
G Col2a1 collagen type II alpha 1 chain acts_upstream_of_or_within ISO
IEA 		(PMID:10100048)
GO_REF:0000107 		RGD
Ensembl		 PMID:10100048 GO_REF:0000107 NCBI chr 7:130,977,561...131,006,627
Ensembl chr 7:130,977,561...131,006,627 		JBrowse link
G Csgalnact1 chondroitin sulfate N-acetylgalactosaminyltransferase 1 acts_upstream_of_or_within ISO
IEA 		MGI:4947395 (PMID:21148564)
GO_REF:0000107 		RGD
Ensembl		 PMID:21148564 GO_REF:0000107 NCBI chr16:20,995,210...21,330,586
Ensembl chr16:26,002,530...26,096,065 		JBrowse link
G Cst5 cystatin D involved_in ISO MGI:3629665 (PMID:16680148) RGD PMID:16680148 NCBI chr 3:137,573,194...137,577,754
Ensembl chr 3:158,033,791...158,038,345 		JBrowse link
G Dlx5 distal-less homeobox 5 involved_in IEA
ISO
ISS 		GO_REF:0000107
(PMID:19956613)
GO_REF:0000024 		Ensembl
RGD
UniProt		 PMID:19956613 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:35,965,579...35,969,973
Ensembl chr 4:35,965,579...35,969,845 		JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO MGI:6402836 (PMID:24770645) RGD PMID:24770645 NCBI chr 1:22,518,051...22,583,044
Ensembl chr 1:22,518,069...22,583,044 		JBrowse link
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO
IEA 		(PMID:21185280), (PMID:23958822)
GO_REF:0000107 		RGD
Ensembl		 PMID:21185280 PMID:23958822 GO_REF:0000107 NCBI chr 7:86,265,651...86,544,488
Ensembl chr 7:86,259,900...86,544,567 		JBrowse link
G Fgf18 fibroblast growth factor 18 acts_upstream_of_or_within ISO MGI:2178751 (PMID:17014841) RGD PMID:17014841 NCBI chr10:17,706,011...17,737,702
Ensembl chr10:18,210,512...18,240,933 		JBrowse link
G Foxc1 forkhead box C1 involved_in ISO
IEA 		(PMID:25808752)
GO_REF:0000107 		RGD
Ensembl		 PMID:25808752 GO_REF:0000107 NCBI chr17:32,840,119...32,844,100
Ensembl chr17:32,805,858...32,844,347 		JBrowse link
G Galnt3 polypeptide N-acetylgalactosaminyltransferase 3 acts_upstream_of_or_within ISO
IEA 		(PMID:25107907)
GO_REF:0000107 		RGD
Ensembl		 PMID:25107907 GO_REF:0000107 NCBI chr 3:50,742,500...50,779,266
Ensembl chr 3:71,150,571...71,174,323 		JBrowse link
G Gnas GNAS complex locus acts_upstream_of_or_within ISO
IEA 		MGI:3043361 (PMID:15797856)
GO_REF:0000107 		RGD
Ensembl		 PMID:15797856 GO_REF:0000107 NCBI chr 3:183,489,648...183,554,570
Ensembl chr 3:183,503,243...183,554,536 		JBrowse link
G Gusb glucuronidase, beta acts_upstream_of_or_within ISO (PMID:29747998) RGD PMID:29747998 NCBI chr12:32,337,281...32,350,838
Ensembl chr12:32,334,075...32,363,024 		JBrowse link
G Hspg2 heparan sulfate proteoglycan 2 acts_upstream_of_or_within ISO MGI:1934892 (PMID:10579729) RGD PMID:10579729 NCBI chr 5:154,960,818...155,061,971
Ensembl chr 5:154,960,846...155,061,971 		JBrowse link
G Ift80 intraflagellar transport 80 acts_upstream_of_or_within ISO
IEA 		MGI:3665440|MGI:5818514 (PMID:26098911)
GO_REF:0000107 		RGD
Ensembl		 PMID:26098911 GO_REF:0000107 NCBI chr 2:153,144,707...153,240,024
Ensembl chr 2:155,455,774...155,550,275 		JBrowse link
G Inppl1 inositol polyphosphate phosphatase-like 1 involved_in ISO
ISS
IEA 		(PMID:23273569)
GO_REF:0000024
GO_REF:0000107 		RGD
UniProt
Ensembl		 PMID:23273569 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:165,595,047...165,609,503
Ensembl chr 1:165,595,063...165,609,503 		JBrowse link
G Mef2c myocyte enhancer factor 2C acts_upstream_of_or_within ISO MGI:99533 (PMID:17336904) RGD PMID:17336904 NCBI chr 2:15,708,732...15,871,639
Ensembl chr 2:15,708,924...15,871,640 		JBrowse link
G Mef2d myocyte enhancer factor 2D acts_upstream_of_or_within ISO MGI:99458 (PMID:17336904) RGD PMID:17336904 NCBI chr 2:175,904,332...175,933,451
Ensembl chr 2:175,903,959...175,930,760 		JBrowse link
G Mmp13 matrix metallopeptidase 13 involved_in IEP
ISO
IEA 		(PMID:17987127)
GO_REF:0000107 		RGD
Ensembl		 PMID:17987127 PMID:10646117 GO_REF:0000107, RGD:10043159 NCBI chr 8:12,782,829...12,793,108
Ensembl chr 8:12,782,813...12,793,105 		JBrowse link
G Mmp14 matrix metallopeptidase 14 acts_upstream_of_or_within ISO
IEA 		MGI:1276107 (PMID:18022611)
GO_REF:0000107 		RGD
Ensembl		 PMID:18022611 GO_REF:0000107 NCBI chr15:31,857,824...31,867,049
Ensembl chr15:31,857,546...31,869,893 		JBrowse link
G Mmp16 matrix metallopeptidase 16 acts_upstream_of_or_within ISO
IEA 		MGI:101900 (PMID:18022611)
GO_REF:0000107 		RGD
Ensembl		 PMID:18022611 GO_REF:0000107 NCBI chr 5:31,312,280...31,556,276
Ensembl chr 5:36,109,265...36,353,252 		JBrowse link
G Nab1 Ngfi-A binding protein 1 acts_upstream_of_or_within
involved_in 		ISO
IEA 		MGI:107563 (PMID:16136673)
GO_REF:0000117
GO_REF:0000107 		RGD
UniProt
Ensembl		 PMID:16136673 GO_REF:0000107 GO_REF:0000117 NCBI chr 9:56,545,547...56,585,045
Ensembl chr 9:56,545,729...56,614,210 		JBrowse link
G Nab2 Ngfi-A binding protein 2 acts_upstream_of_or_within
involved_in 		ISO
IEA 		MGI:107564 (PMID:16136673)
GO_REF:0000117
GO_REF:0000107 		RGD
UniProt
Ensembl		 PMID:16136673 GO_REF:0000107 GO_REF:0000117 NCBI chr 7:65,382,863...65,389,527
Ensembl chr 7:65,382,863...65,389,255 		JBrowse link
G Nfix nuclear factor I X involved_in ISO MGI:3714028 (PMID:17353270) RGD PMID:17353270 NCBI chr19:40,259,873...40,356,966
Ensembl chr19:40,260,084...40,353,092 		JBrowse link
G Npr2 natriuretic peptide receptor 2 involved_in IEA
ISO 		GO_REF:0000107
MGI:1856702|MGI:3522129|MGI:3774275 (PMID:15572448), (PMID:15722353), (PMID:17728275) 		Ensembl
RGD		 PMID:15572448 PMID:15722353 PMID:17728275 GO_REF:0000107 NCBI chr 5:62,678,197...62,697,360
Ensembl chr 5:62,678,367...62,697,343 		JBrowse link
G Pex7 peroxisomal biogenesis factor 7 acts_upstream_of_or_within ISO
IEA 		MGI:3052739 (PMID:12915479)
GO_REF:0000107 		RGD
Ensembl		 PMID:12915479 GO_REF:0000107 NCBI chr 1:14,582,698...14,646,686
Ensembl chr 1:16,402,320...16,466,366 		JBrowse link
G Phospho1 phosphoethanolamine/phosphocholine phosphatase 1 acts_upstream_of_or_within ISO MGI:5049904 (PMID:20684022) RGD PMID:20684022 NCBI chr10:81,258,810...81,266,345
Ensembl chr10:81,257,427...81,268,481 		JBrowse link
G Pthlh parathyroid hormone-like hormone acts_upstream_of_or_within ISO MGI:2154515 (PMID:8895385) RGD PMID:8895385 NCBI chr 4:181,919,400...181,930,454
Ensembl chr 4:181,919,400...181,930,454 		JBrowse link
G Runx2 RUNX family transcription factor 2 acts_upstream_of_or_within ISO MGI:2176466 (PMID:10072783) RGD PMID:10072783 NCBI chr 9:23,661,278...23,990,248
Ensembl chr 9:23,664,952...23,990,027 		JBrowse link
G Scx scleraxis bHLH transcription factor involved_in ISO (PMID:20059955) RGD PMID:20059955 NCBI chr 7:108,176,608...108,178,626
Ensembl chr 7:110,054,601...110,061,438 		JBrowse link
G Sik3 SIK family kinase 3 acts_upstream_of_or_within ISO
IEA 		MGI:5317918 (PMID:22318228)
GO_REF:0000107 		RGD
Ensembl		 PMID:22318228 GO_REF:0000107 NCBI chr 8:55,208,969...55,419,138
Ensembl chr 8:55,208,815...55,419,138 		JBrowse link
G Smpd3 sphingomyelin phosphodiesterase 3 acts_upstream_of_or_within ISO
IEA 		MGI:1856877|MGI:3575405 (PMID:17591962), (PMID:21788370), (PMID:24505141)
GO_REF:0000107 		RGD
Ensembl		 PMID:17591962 PMID:21788370 PMID:24505141 GO_REF:0000107 NCBI chr19:51,072,209...51,155,639
Ensembl chr19:51,072,209...51,085,936 		JBrowse link
G Tek TEK receptor tyrosine kinase IEP RGD PMID:11735002 RGD:1601509 NCBI chr 5:114,722,815...114,849,535
Ensembl chr 5:114,723,006...114,849,991 		JBrowse link
G Tmem119 transmembrane protein 119 involved_in ISO
IEA 		(PMID:22416756)
GO_REF:0000107 		RGD
Ensembl		 PMID:22416756 GO_REF:0000107 NCBI chr12:42,828,621...42,835,678
Ensembl chr12:48,489,137...48,496,261 		JBrowse link
frontal suture morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO
IEA 		MGI:1856276 (PMID:20570969)
GO_REF:0000107 		RGD
Ensembl		 PMID:20570969 GO_REF:0000107 NCBI chr17:54,134,064...54,405,198
Ensembl chr17:54,134,064...54,405,198 		JBrowse link
G Msx2 msh homeobox 2 acts_upstream_of_or_within ISO
IEA 		MGI:1926381 (PMID:10742104)
GO_REF:0000107 		RGD
Ensembl		 PMID:10742104 GO_REF:0000107 NCBI chr17:11,097,214...11,102,879
Ensembl chr17:11,102,247...11,107,945 		JBrowse link
G Tgfb1 transforming growth factor, beta 1 involved_in IEP
IEA 		GO_REF:0000117 UniProt
RGD		 PMID:12416537 GO_REF:0000117, RGD:2302805 NCBI chr 1:90,324,312...90,340,627
Ensembl chr 1:90,324,046...90,340,899 		JBrowse link
G Tgfb2 transforming growth factor, beta 2 involved_in IEP
IEA 		GO_REF:0000117 UniProt
RGD		 PMID:12416537 GO_REF:0000117, RGD:2302805 NCBI chr13:100,691,540...100,793,227
Ensembl chr13:100,692,953...100,792,856 		JBrowse link
G Tgfb3 transforming growth factor, beta 3 involved_in IEP
IEA 		GO_REF:0000117 UniProt
RGD		 PMID:12416537 GO_REF:0000117, RGD:2302805 NCBI chr 6:111,435,170...111,457,646
Ensembl chr 6:111,435,170...111,456,946 		JBrowse link
growth plate cartilage axis specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stc1 stanniocalcin 1 involved_in ISO
IEA 		(PMID:16377640)
GO_REF:0000107 		RGD
Ensembl		 PMID:16377640 GO_REF:0000107 NCBI chr15:50,709,439...50,720,093
Ensembl chr15:50,709,415...50,720,082 		JBrowse link
growth plate cartilage chondrocyte development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col27a1 collagen type XXVII alpha 1 chain acts_upstream_of_or_within ISO
IEA 		MGI:5315593 (PMID:22206015)
GO_REF:0000107 		RGD
Ensembl		 PMID:22206015 GO_REF:0000107 NCBI chr 5:81,662,822...81,781,502
Ensembl chr 5:81,661,685...81,781,502 		JBrowse link
G Poc1a POC1 centriolar protein A acts_upstream_of_or_within ISO
IEA 		MGI:2135614 (PMID:26496357)
GO_REF:0000107 		RGD
Ensembl		 PMID:26496357 GO_REF:0000107 NCBI chr 8:106,922,058...106,991,678
Ensembl chr 8:115,801,396...115,870,392 		JBrowse link
G Tsku tsukushi, small leucine rich proteoglycan involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 1:152,660,259...152,671,682
Ensembl chr 1:162,064,126...162,089,272 		JBrowse link
growth plate cartilage chondrocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf2 activating transcription factor 2 involved_in ISO MGI:1857283 (PMID:18638549) RGD PMID:18638549 NCBI chr 3:79,125,814...79,202,896
Ensembl chr 3:79,126,705...79,202,745 		JBrowse link
G Ift80 intraflagellar transport 80 acts_upstream_of_or_within ISO
IEA 		MGI:3665440|MGI:5818514 (PMID:26098911)
GO_REF:0000107 		RGD
Ensembl		 PMID:26098911 GO_REF:0000107 NCBI chr 2:153,144,707...153,240,024
Ensembl chr 2:155,455,774...155,550,275 		JBrowse link
G Nppc natriuretic peptide C involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:11259675) 		UniProt
Ensembl
RGD		 PMID:11259675 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:94,767,986...94,772,186
Ensembl chr 9:94,767,986...94,772,186 		JBrowse link
growth plate cartilage chondrocyte growth term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cst5 cystatin D involved_in ISO MGI:3629665 (PMID:16680148) RGD PMID:16680148 NCBI chr 3:137,573,194...137,577,754
Ensembl chr 3:158,033,791...158,038,345 		JBrowse link
G Rarg retinoic acid receptor, gamma involved_in ISO
IEA 		(PMID:19389355)
GO_REF:0000107 		RGD
Ensembl		 PMID:19389355 GO_REF:0000107 NCBI chr 7:135,246,427...135,268,889
Ensembl chr 7:135,246,427...135,268,889 		JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:22421045) 		UniProt
Ensembl
RGD		 PMID:22421045 GO_REF:0000024 GO_REF:0000107 NCBI chr10:98,305,744...98,311,250
Ensembl chr10:98,305,744...98,311,250 		JBrowse link
G Tgfbr2 transforming growth factor, beta receptor 2 acts_upstream_of_or_within ISO
IEA 		MGI:2384513 (PMID:21420963)
GO_REF:0000107 		RGD
Ensembl		 PMID:21420963 GO_REF:0000107 NCBI chr 8:124,672,677...124,761,741
Ensembl chr 8:124,674,986...124,761,469 		JBrowse link
growth plate cartilage chondrocyte morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Matn1 matrilin 1 acts_upstream_of_or_within ISO
IEA 		MGI:2153042|MGI:3663272 (PMID:16877353)
GO_REF:0000107 		RGD
Ensembl		 PMID:16877353 GO_REF:0000107 NCBI chr 5:143,117,198...143,127,140
Ensembl chr 5:148,401,620...148,411,256 		JBrowse link
growth plate cartilage chondrocyte proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf2 activating transcription factor 2 involved_in ISO MGI:1857283 (PMID:18638549) RGD PMID:18638549 NCBI chr 3:79,125,814...79,202,896
Ensembl chr 3:79,126,705...79,202,745 		JBrowse link
G Cer1 cerberus 1, DAN family BMP antagonist involved_in ISO
IEA 		(PMID:19113921)
GO_REF:0000107 		RGD
Ensembl		 PMID:19113921 GO_REF:0000107 NCBI chr 5:97,306,427...97,309,783
Ensembl chr 5:102,352,368...102,355,720 		JBrowse link
G Nppc natriuretic peptide C involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:11259675) 		UniProt
Ensembl
RGD		 PMID:11259675 GO_REF:0000024 GO_REF:0000107 NCBI chr 9:94,767,986...94,772,186
Ensembl chr 9:94,767,986...94,772,186 		JBrowse link
growth plate cartilage development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Col2a1 collagen type II alpha 1 chain IEP spheno-occipital synchondrosis RGD PMID:20591638 RGD:8661256 NCBI chr 7:130,977,561...131,006,627
Ensembl chr 7:130,977,561...131,006,627 		JBrowse link
G Col9a1 collagen type IX alpha 1 chain acts_upstream_of_or_within ISO MGI:2152964|MGI:88469|MGI:98737|MGI:98739 (PMID:18191556), (PMID:18467703) RGD PMID:18191556 PMID:18467703 NCBI chr 9:26,585,034...26,668,222
Ensembl chr 9:34,003,905...34,164,543 		JBrowse link
G Comp cartilage oligomeric matrix protein acts_upstream_of_or_within ISO
IEA 		MGI:2180787|MGI:3758741|MGI:88465|MGI:98737|MGI:98739 (PMID:17588960), (PMID:18191556), (PMID:18467703)
GO_REF:0000107 		RGD
Ensembl		 PMID:17588960 PMID:18191556 PMID:18467703 GO_REF:0000107 NCBI chr16:19,047,206...19,055,584
Ensembl chr16:19,081,172...19,089,605 		JBrowse link
G Fosl2 FOS like 2, AP-1 transcription factor subunit acts_upstream_of_or_within ISO
IEA 		(PMID:15509771)
GO_REF:0000107 		RGD
Ensembl		 PMID:15509771 GO_REF:0000107 NCBI chr 6:30,017,952...30,039,269
Ensembl chr 6:30,021,916...30,039,406 		JBrowse link
G Gusb glucuronidase, beta acts_upstream_of_or_within ISO (PMID:29747998), (PMID:31974587) RGD PMID:29747998 PMID:31974587 NCBI chr12:32,337,281...32,350,838
Ensembl chr12:32,334,075...32,363,024 		JBrowse link
G Ift80 intraflagellar transport 80 acts_upstream_of_or_within ISO
IEA 		MGI:3665440|MGI:5818514 (PMID:26098911), (PMID:32227389)
GO_REF:0000107 		RGD
Ensembl		 PMID:26098911 PMID:32227389 GO_REF:0000107 NCBI chr 2:153,144,707...153,240,024
Ensembl chr 2:155,455,774...155,550,275 		JBrowse link
G Mmp13 matrix metallopeptidase 13 acts_upstream_of_or_within ISO
IEA 		MGI:98729 (PMID:21444811)
GO_REF:0000107 		RGD
Ensembl		 PMID:21444811 GO_REF:0000107 NCBI chr 8:12,782,829...12,793,108
Ensembl chr 8:12,782,813...12,793,105 		JBrowse link
G Npr2 natriuretic peptide receptor 2 involved_in IEA
ISO 		GO_REF:0000107
MGI:3774275|MGI:4358115 (PMID:17728275), (PMID:23065701) 		Ensembl
RGD		 PMID:17728275 PMID:23065701 GO_REF:0000107 NCBI chr 5:62,678,197...62,697,360
Ensembl chr 5:62,678,367...62,697,343 		JBrowse link
G Rara retinoic acid receptor, alpha acts_upstream_of_or_within
involved_in 		ISO
IEA 		MGI:97858 (PMID:19389355)
GO_REF:0000117
GO_REF:0000107 		RGD
UniProt
Ensembl		 PMID:19389355 GO_REF:0000107 GO_REF:0000117 NCBI chr10:84,379,780...84,424,371
Ensembl chr10:84,389,622...84,425,160 		JBrowse link
G Rarb retinoic acid receptor, beta acts_upstream_of_or_within
involved_in 		ISO
IEA 		MGI:97858 (PMID:19389355)
GO_REF:0000117
GO_REF:0000107 		RGD
UniProt
Ensembl		 PMID:19389355 GO_REF:0000107 GO_REF:0000117 NCBI chr15:8,700,533...9,051,288
Ensembl chr15:11,131,358...11,482,040 		JBrowse link
G Rarg retinoic acid receptor, gamma acts_upstream_of_or_within
involved_in 		ISO
IEA 		MGI:97856|MGI:97857 (PMID:19389355)
GO_REF:0000117
GO_REF:0000107 		RGD
UniProt
Ensembl		 PMID:19389355 GO_REF:0000107 GO_REF:0000117 NCBI chr 7:135,246,427...135,268,889
Ensembl chr 7:135,246,427...135,268,889 		JBrowse link
G Tgfbr2 transforming growth factor, beta receptor 2 acts_upstream_of_or_within ISO
IEA 		MGI:1340026 (PMID:21420963)
GO_REF:0000107 		RGD
Ensembl		 PMID:21420963 GO_REF:0000107 NCBI chr 8:124,672,677...124,761,741
Ensembl chr 8:124,674,986...124,761,469 		JBrowse link
G Thbs1 thrombospondin 1 acts_upstream_of_or_within ISO MGI:2154534|MGI:88465|MGI:88469|MGI:98739 (PMID:18467703) RGD PMID:18467703 NCBI chr 3:125,510,250...125,525,402
Ensembl chr 3:125,510,250...125,525,402 		JBrowse link
G Thbs3 thrombospondin 3 acts_upstream_of_or_within ISO
IEA 		MGI:3581964|MGI:88465|MGI:88469|MGI:98737 (PMID:18467703)
GO_REF:0000107 		RGD
Ensembl		 PMID:18467703 GO_REF:0000107 NCBI chr 2:174,621,788...174,633,594
Ensembl chr 2:176,919,230...176,931,357 		JBrowse link
G Zmpste24 zinc metallopeptidase STE24 acts_upstream_of_or_within ISO
IEA 		MGI:2180033 (PMID:11923874)
GO_REF:0000107 		RGD
Ensembl		 PMID:11923874 GO_REF:0000107 NCBI chr 5:139,912,395...139,945,532
Ensembl chr 5:139,913,671...139,945,532 		JBrowse link
growth plate cartilage morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gusb glucuronidase, beta acts_upstream_of_or_within ISO MGI:96824 (PMID:20018674) RGD PMID:20018674 NCBI chr12:32,337,281...32,350,838
Ensembl chr12:32,334,075...32,363,024 		JBrowse link
G Tlr4 toll-like receptor 4 acts_upstream_of_or_within ISO MGI:95872 (PMID:20018674) RGD PMID:20018674 NCBI chr 5:85,161,247...85,174,882
Ensembl chr 5:85,161,192...85,175,007 		JBrowse link
lambdoid suture morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO
IEA 		MGI:1856276 (PMID:20570969)
GO_REF:0000107 		RGD
Ensembl		 PMID:20570969 GO_REF:0000107 NCBI chr17:54,134,064...54,405,198
Ensembl chr17:54,134,064...54,405,198 		JBrowse link
negative regulation of bone trabecula formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chad chondroadherin acts_upstream_of_or_within ISO
IEA 		MGI:5529270 (PMID:23755099)
GO_REF:0000107 		RGD
Ensembl		 PMID:23755099 GO_REF:0000107 NCBI chr10:79,512,170...79,515,941
Ensembl chr10:80,008,767...80,012,816 		JBrowse link
G Cyp27b1 cytochrome P450, family 27, subfamily b, polypeptide 1 IMP RGD PMID:32231239 RGD:32716373 NCBI chr 7:64,756,626...64,761,570
Ensembl chr 7:64,756,626...64,761,570 		JBrowse link
G Grem1 gremlin 1, DAN family BMP antagonist involved_in ISO (PMID:15539560) RGD PMID:15539560 NCBI chr 3:120,966,639...120,978,319
Ensembl chr 3:120,966,623...120,979,089 		JBrowse link
G Vdr vitamin D receptor IMP RGD PMID:32231239 RGD:32716373 NCBI chr 7:130,864,764...130,916,757
Ensembl chr 7:130,866,745...130,916,757 		JBrowse link
negative regulation of growth plate cartilage chondrocyte proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dspp dentin sialophosphoprotein acts_upstream_of_or_within ISO MGI:2653208 (PMID:26972716) RGD PMID:26972716 NCBI chr14:5,870,232...5,876,339
Ensembl chr14:5,870,232...5,876,339 		JBrowse link
perichondral bone morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO
IEA 		(PMID:28768899)
GO_REF:0000107 		RGD
Ensembl		 PMID:28768899 GO_REF:0000107 NCBI chr 7:86,265,651...86,544,488
Ensembl chr 7:86,259,900...86,544,567 		JBrowse link
positive regulation of growth plate cartilage chondrocyte proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Por cytochrome p450 oxidoreductase IMP positive regulation RGD PMID:19264869 RGD:2316785 NCBI chr12:26,587,674...26,655,612
Ensembl chr12:26,587,674...26,635,809 		JBrowse link
regulation of growth plate cartilage chondrocyte proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Carm1 coactivator-associated arginine methyltransferase 1 acts_upstream_of_or_within ISO MGI:2663959 (PMID:19725955) RGD PMID:19725955 NCBI chr 8:28,373,370...28,418,056
Ensembl chr 8:28,373,362...28,418,056 		JBrowse link
sagittal suture morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO
IEA 		MGI:1856276 (PMID:20570969)
GO_REF:0000107 		RGD
Ensembl		 PMID:20570969 GO_REF:0000107 NCBI chr17:54,134,064...54,405,198
Ensembl chr17:54,134,064...54,405,198 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20668
    developmental process 7294
      anatomical structure morphogenesis 3073
        animal organ morphogenesis 1183
          skeletal system morphogenesis 272
            bone morphogenesis + 123
            bone trabecula formation + 13
            cartilage condensation + 23
            embryonic skeletal system morphogenesis + 109
Path 2
Term Annotations click to browse term
  biological_process 20668
    developmental process 7294
      anatomical structure development 6777
        multicellular organism development 5422
          system development 4701
            skeletal system development 600
              skeletal system morphogenesis 272
                bone morphogenesis + 123
                bone trabecula formation + 13
                cartilage condensation + 23
                embryonic skeletal system morphogenesis + 109
paths to the root