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ONTOLOGY REPORT - ANNOTATIONS

Term:embryonic skeletal system morphogenesis
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Accession:GO:0048704 term browser browse the term
Definition:The process in which the anatomical structures of the skeleton are generated and organized during the embryonic phase.
Synonyms:exact_synonym: embryonic skeletal morphogenesis


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embryonic skeletal system morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALX1 ALX homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15728667), (PMID:9847249) TreeGrafter
MGI		 PMID:9847249 PMID:15728667 GO_REF:0000118 NCBI chr15:26,838,615...26,858,786
Ensembl chr15:26,834,670...26,858,803 		JBrowse link
G ALX3 ALX homeobox 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11641221), (PMID:15728667) Ensembl
MGI		 PMID:11641221 PMID:15728667 GO_REF:0000107 NCBI chr 6:41,899,288...41,907,832
Ensembl chr 6:41,903,474...41,906,963 		JBrowse link
G ALX4 ALX homeobox 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9847249)
(PMID:11641221)
(PMID:15728667)		 Ensembl
MGI		 PMID:9847249 PMID:11641221 PMID:15728667 GO_REF:0000107 NCBI chr18:44,922,042...44,967,557
Ensembl chr18:44,922,150...44,967,550 		JBrowse link
G ASXL2 ASXL transcriptional regulator 2 acts_upstream_of_or_within ISO (PMID:19270745) MGI PMID:19270745 NCBI chr17:19,914,026...20,065,141
Ensembl chr17:19,895,568...20,044,691 		JBrowse link
G BMI1 BMI1 proto-oncogene, polycomb ring finger involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11290297) Ensembl
MGI		 PMID:11290297 GO_REF:0000107 NCBI chr 2:10,818,232...10,828,473
Ensembl chr 2:10,818,232...10,833,613 		JBrowse link
G BMP4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16712836) Ensembl
MGI		 PMID:16712836 GO_REF:0000107 NCBI chr 8:29,997,563...30,254,307
Ensembl chr 8:29,997,569...30,004,557 		JBrowse link
G CHST11 carbohydrate sulfotransferase 11 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16079159) Ensembl
MGI		 PMID:16079159 GO_REF:0000107 NCBI chr10:33,555,629...33,810,808
Ensembl chr10:33,555,628...33,810,558 		JBrowse link
G COL11A1 collagen type XI alpha 1 chain involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:4100752) Ensembl
MGI		 PMID:4100752 GO_REF:0000107 NCBI chr 6:47,425,387...47,622,189
Ensembl chr 6:47,425,307...47,621,012 		JBrowse link
G DLG1 discs large MAGUK scaffold protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11238884) Ensembl
MGI		 PMID:11238884 GO_REF:0000107 NCBI chr33:30,016,323...30,253,180
Ensembl chr33:30,016,600...30,253,547 		JBrowse link
G DSCAML1 DS cell adhesion molecule like 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 5:15,839,504...16,187,465
Ensembl chr 5:15,826,726...16,186,880 		JBrowse link
G DYNC2I1 dynein 2 intermediate chain 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:20,810,735...20,859,441
Ensembl chr16:20,810,345...20,859,037 		JBrowse link
G EYA1 EYA transcriptional coactivator and phosphatase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10471511) Ensembl
MGI		 PMID:10471511 GO_REF:0000107 NCBI chr29:20,176,306...20,595,131
Ensembl chr29:20,177,014...20,525,653 		JBrowse link
G FLVCR1 FLVCR choline and heme transporter 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23187127) Ensembl
MGI		 PMID:23187127 GO_REF:0000107 NCBI chr 7:11,001,155...11,038,910
Ensembl chr 7:11,001,101...11,035,980 		JBrowse link
G FOXC2 forkhead box C2 acts_upstream_of_or_within ISO (PMID:9409679) MGI PMID:9409679 NCBI chr 5:66,234,336...66,296,007
Ensembl chr 5:66,294,176...66,295,693 		JBrowse link
G FOXC2 forkhead box C2 involved_in IEA Ensembl GO_REF:0000107
G FUZ fuzzy planar cell polarity protein involved_in ISO (MGI:4438317|PMID:19767740), (MGI:5296432|PMID:21935430), (MGI:5498583|PMID:23806618) UniProt PMID:19767740 PMID:21935430 PMID:23806618 MGI:4438317 MGI:5296432 MGI:5498583 NCBI chr 1:106,742,381...106,752,543
Ensembl chr 1:106,747,860...106,805,699 		JBrowse link
G GLI3 GLI family zinc finger 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15728667) Ensembl
MGI		 PMID:15728667 GO_REF:0000107 NCBI chr18:7,800,817...8,071,531
Ensembl chr18:7,801,394...8,068,132 		JBrowse link
G GSC goosecoid homeobox involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:7555726)
(PMID:7555718)		 Ensembl
MGI		 PMID:7555718 PMID:7555726 GO_REF:0000107 NCBI chr 8:63,684,149...63,707,030
Ensembl chr 8:63,684,137...63,707,054 		JBrowse link
G HOXA2 homeobox A2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15634706) Ensembl
MGI		 PMID:15634706 GO_REF:0000107 NCBI chr14:40,273,992...40,276,975
Ensembl chr14:40,274,469...40,276,239 		JBrowse link
G HOXA3 homeobox A3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9441667) Ensembl
MGI
TreeGrafter		 PMID:9441667 GO_REF:0000107 GO_REF:0000118 NCBI chr14:40,280,866...40,326,559
Ensembl chr14:40,280,861...40,296,147 		JBrowse link
G HOXA4 homeobox A4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:7628700)
(PMID:7918106)		 TreeGrafter
MGI		 PMID:7628700 PMID:7918106 GO_REF:0000118 NCBI chr14:40,302,106...40,304,437
Ensembl chr14:40,302,816...40,304,321 		JBrowse link
G HOXA5 homeobox A5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17417799)
(PMID:7901120), (PMID:9603431)		 Ensembl
MGI		 PMID:7901120 PMID:9603431 PMID:17417799 GO_REF:0000107 NCBI chr14:40,315,409...40,319,001
Ensembl chr14:40,315,639...40,317,768 		JBrowse link
G HOXA7 homeobox A7 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:40,327,918...40,334,073
Ensembl chr14:40,329,127...40,330,842 		JBrowse link
G HOXA9 homeobox A9 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr14:40,336,829...40,340,533
Ensembl chr14:40,337,999...40,339,923 		JBrowse link
G HOXB1 homeobox B1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10885747) Ensembl
MGI		 PMID:10885747 GO_REF:0000107 NCBI chr 9:24,791,848...24,795,443
Ensembl chr 9:24,792,889...24,794,302 		JBrowse link
G HOXB2 homeobox B2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10885747) Ensembl
MGI		 PMID:10885747 GO_REF:0000107 NCBI chr 9:24,803,996...24,810,109
Ensembl chr 9:24,804,426...24,806,614 		JBrowse link
G HOXB3 homeobox B3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9441667)
(PMID:10885747)		 Ensembl
MGI
TreeGrafter		 PMID:9441667 PMID:10885747 GO_REF:0000107 GO_REF:0000118 NCBI chr 9:24,810,299...24,837,434
Ensembl chr 9:24,809,739...24,836,058 		JBrowse link
G HOXB4 homeobox B4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:7628700)
(PMID:10885747)		 Ensembl
MGI
TreeGrafter		 PMID:7628700 PMID:10885747 GO_REF:0000107 GO_REF:0000118 NCBI chr 9:24,837,572...24,848,600
Ensembl chr 9:24,837,914...24,840,648 		JBrowse link
G HOXB5 homeobox B5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:7828847)
(PMID:10885747)		 Ensembl
MGI		 PMID:7828847 PMID:10885747 GO_REF:0000107 NCBI chr 9:24,853,759...24,856,478
Ensembl chr 9:24,853,759...24,856,437 		JBrowse link
G HOXB6 homeobox B6 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10885747) Ensembl
MGI		 PMID:10885747 GO_REF:0000107 NCBI chr 9:24,858,416...24,862,360
Ensembl chr 9:24,859,054...24,860,774 		JBrowse link
G HOXB7 homeobox B7 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9784603)
(PMID:10885747)		 Ensembl
MGI		 PMID:9784603 PMID:10885747 GO_REF:0000107 NCBI chr 9:24,870,037...24,874,517
Ensembl chr 9:24,870,612...24,873,453 		JBrowse link
G HOXB8 homeobox B8 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10885747)
(PMID:10559485)		 Ensembl
MGI		 PMID:10559485 PMID:10885747 GO_REF:0000107 NCBI chr 9:24,874,893...24,888,981
Ensembl chr 9:24,874,899...24,877,504 		JBrowse link
G HOXB9 homeobox B9 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr 9:24,884,101...24,889,904
Ensembl chr 9:24,872,950...24,889,376 		JBrowse link
G HOXC4 homeobox C4 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chr27:1,209,510...1,246,873
Ensembl chr27:1,172,229...1,226,572 		JBrowse link
G HOXC9 homeobox C9 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:7547473) TreeGrafter
MGI		 PMID:7547473 GO_REF:0000118
G HOXC9 homeobox C9 involved_in IEA TreeGrafter GO_REF:0000118
G HOXD10 homeobox D10 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10642795) Ensembl
MGI		 PMID:10642795 GO_REF:0000107 NCBI chr36:19,924,352...19,927,706
Ensembl chr36:19,916,175...19,927,724 		JBrowse link
G HOXD3 homeobox D3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:7913519)
(PMID:7910549), (PMID:7913519)		 Ensembl
MGI
TreeGrafter		 PMID:7910549 PMID:7913519 GO_REF:0000107 GO_REF:0000118 NCBI chr36:19,961,393...19,981,672
Ensembl chr36:19,960,761...19,980,525 		JBrowse link
G HOXD4 homeobox D4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:7750651)
(PMID:7628700)		 Ensembl
MGI
TreeGrafter		 PMID:7628700 PMID:7750651 GO_REF:0000107 GO_REF:0000118
G HOXD8 homeobox D8 involved_in IEA TreeGrafter GO_REF:0000118 Ensembl chr36:19,937,388...19,941,104 JBrowse link
G HOXD9 homeobox D9 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:10642795) Ensembl
MGI
TreeGrafter		 PMID:10642795 GO_REF:0000107 GO_REF:0000118 NCBI chr36:19,929,479...19,932,861 JBrowse link
G HSPG2 heparan sulfate proteoglycan 2 acts_upstream_of_or_within ISO (PMID:10579729) MGI PMID:10579729 NCBI chr 2:77,263,534...77,366,558
Ensembl chr 2:77,301,858...77,367,724 		JBrowse link
G MDFI MyoD family inhibitor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9799236) Ensembl
MGI		 PMID:9799236 GO_REF:0000107 NCBI chr12:10,324,499...10,339,699
Ensembl chr12:10,323,552...10,339,697 		JBrowse link
G MEF2C myocyte enhancer factor 2C acts_upstream_of_or_within ISO (PMID:17420000) MGI PMID:17420000 NCBI chr 3:19,778,997...19,948,203
Ensembl chr 3:19,779,007...19,943,852 		JBrowse link
G MEGF8 multiple EGF like domains 8 involved_in ISO (MGI:5551355|PMID:24052814) UniProt PMID:24052814 MGI:5551355 NCBI chr 1:112,020,344...112,063,120
Ensembl chr 1:112,021,960...112,024,773 		JBrowse link
G MEN1 menin 1 acts_upstream_of_or_within ISO (PMID:17927973) MGI PMID:17927973 NCBI chr18:52,346,747...52,352,884
Ensembl chr18:52,346,933...52,353,340 		JBrowse link
G MYCN MYCN proto-oncogene, bHLH transcription factor acts_upstream_of_or_within ISO (PMID:17360777) MGI PMID:17360777 NCBI chr17:11,720,857...11,724,308 JBrowse link
G MYF5 myogenic factor 5 acts_upstream_of_or_within ISO (PMID:10929709) MGI PMID:10929709 NCBI chr15:23,049,235...23,051,604
Ensembl chr15:23,048,585...23,051,970 		JBrowse link
G OSR2 odd-skipped related transciption factor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15175245) Ensembl
MGI		 PMID:15175245 GO_REF:0000107 NCBI chr13:1,019,167...1,031,622
Ensembl chr13:1,023,879...1,031,225 		JBrowse link
G PCGF2 polycomb group ring finger 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:11290297) Ensembl
MGI		 PMID:11290297 GO_REF:0000107 NCBI chr 9:23,488,862...23,499,769
Ensembl chr 9:23,488,857...23,499,549 		JBrowse link
G PRRX1 paired related homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:7758948)
(PMID:11532916), (PMID:9729491), (PMID:9876178)		 Ensembl
MGI		 PMID:7758948 PMID:9729491 PMID:9876178 PMID:11532916 GO_REF:0000107 NCBI chr 7:28,065,570...28,138,734
Ensembl chr 7:28,068,711...28,138,787 		JBrowse link
G PRRX2 paired related homeobox 2 acts_upstream_of_or_within ISO (PMID:11532916), (PMID:9729491), (PMID:9876178) MGI PMID:9729491 PMID:9876178 PMID:11532916 NCBI chr 9:54,089,046...54,112,595
Ensembl chr 9:54,093,163...54,096,348 		JBrowse link
G SATB2 SATB homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16960803)
(PMID:16751105)		 Ensembl
MGI		 PMID:16751105 PMID:16960803 GO_REF:0000107 NCBI chr37:8,548,295...8,837,416
Ensembl chr37:8,551,017...8,731,149 		JBrowse link
G SIX1 SIX homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15788460) Ensembl
MGI		 PMID:15788460 GO_REF:0000107 NCBI chr 8:35,676,705...35,679,534
Ensembl chr 8:35,676,479...35,679,534 		JBrowse link
G SIX2 SIX homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15634706) Ensembl
MGI		 PMID:15634706 GO_REF:0000107 NCBI chr10:47,399,152...47,403,503
Ensembl chr10:47,400,034...47,403,509 		JBrowse link
G SIX4 SIX homeobox 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15788460) Ensembl
MGI		 PMID:15788460 GO_REF:0000107 NCBI chr 8:35,735,893...35,748,976
Ensembl chr 8:35,737,058...35,748,893 		JBrowse link
G SOX11 SRY-box transcription factor 11 involved_in IEA Ensembl GO_REF:0000107
G TBX15 T-box transcription factor 15 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15728667) Ensembl
MGI		 PMID:15728667 GO_REF:0000107 NCBI chr17:56,079,739...56,190,417
Ensembl chr17:56,081,411...56,204,192 		JBrowse link
G TWIST1 twist family bHLH transcription factor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15030764) Ensembl
MGI		 PMID:15030764 GO_REF:0000107
G WNT9A Wnt family member 9A acts_upstream_of_or_within ISO (PMID:16818445) MGI PMID:16818445 NCBI chr14:946,843...959,289
Ensembl chr14:953,244...959,295 		JBrowse link
G ZEB1 zinc finger E-box binding homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9389660) Ensembl
MGI		 PMID:9389660 GO_REF:0000107 NCBI chr 2:15,300,401...15,481,535
Ensembl chr 2:15,299,723...15,481,495 		JBrowse link
embryonic cranial skeleton morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9268572) Ensembl
MGI		 PMID:9268572 GO_REF:0000107 NCBI chr 8:29,997,563...30,254,307
Ensembl chr 8:29,997,569...30,004,557 		JBrowse link
G DLX2 distal-less homeobox 2 acts_upstream_of_or_within ISO (PMID:7590232) MGI PMID:7590232 NCBI chr36:16,499,009...16,502,365
Ensembl chr36:16,484,302...16,502,510 		JBrowse link
G EIF4A3 eukaryotic translation initiation factor 4A3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:1,582,950...1,593,893
Ensembl chr 9:1,582,993...1,593,892 		JBrowse link
G FGFR2 fibroblast growth factor receptor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr28:31,303,882...31,411,015
Ensembl chr28:31,303,894...31,411,621 		JBrowse link
G FOXC2 forkhead box C2 acts_upstream_of_or_within ISO (PMID:9106663) MGI PMID:9106663 NCBI chr 5:66,234,336...66,296,007
Ensembl chr 5:66,294,176...66,295,693 		JBrowse link
G FOXC2 forkhead box C2 involved_in IEA Ensembl GO_REF:0000107
G GAS1 growth arrest specific 1 acts_upstream_of_or_within ISO (PMID:17525797) MGI PMID:17525797 NCBI chr 1:72,927,346...72,930,119
Ensembl chr 1:72,927,670...72,928,827 		JBrowse link
G GNAS GNAS complex locus involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15797856) Ensembl
MGI		 PMID:15797856 GO_REF:0000107 NCBI chr24:43,643,409...43,658,641
Ensembl chr24:43,643,405...43,658,657 		JBrowse link
G GRHL2 grainyhead like transcription factor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:21377456) Ensembl
MGI		 PMID:21377456 GO_REF:0000107 NCBI chr13:3,204,898...3,362,533
Ensembl chr13:3,204,925...3,362,096 		JBrowse link
G IFT140 intraflagellar transport 140 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23469164) Ensembl
MGI		 PMID:23469164 GO_REF:0000107 NCBI chr 6:39,262,887...39,308,912
Ensembl chr 6:39,295,045...39,308,758 		JBrowse link
G IRX5 iroquois homeobox 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:60,957,353...60,978,782
Ensembl chr 2:60,968,193...61,041,385 		JBrowse link
G MMP14 matrix metallopeptidase 14 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18022611) Ensembl
MGI		 PMID:18022611 GO_REF:0000107 NCBI chr 8:3,183,419...3,193,079
Ensembl chr 8:3,183,606...3,194,122 		JBrowse link
G MMP16 matrix metallopeptidase 16 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18022611) Ensembl
MGI		 PMID:18022611 GO_REF:0000107 NCBI chr29:33,896,133...34,207,560
Ensembl chr29:33,917,907...34,207,466 		JBrowse link
G NIPBL NIPBL cohesin loading factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19763162) Ensembl
MGI		 PMID:19763162 GO_REF:0000107 NCBI chr 4:71,583,118...71,780,986
Ensembl chr 4:71,583,732...71,780,852 		JBrowse link
G NODAL nodal growth differentiation factor acts_upstream_of_or_within ISO (PMID:11311163) MGI PMID:11311163 NCBI chr 4:21,366,828...21,374,623
Ensembl chr 4:21,367,583...21,375,151 		JBrowse link
G PAX5 paired box 5 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:23349049) Ensembl
MGI		 PMID:23349049 GO_REF:0000107 NCBI chr11:53,194,905...53,390,204
Ensembl chr11:53,201,344...53,390,974 		JBrowse link
G PDGFRA platelet derived growth factor receptor alpha involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr13:46,729,722...46,775,828
Ensembl chr13:46,730,703...46,773,278 		JBrowse link
G PRRX1 paired related homeobox 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9729491)
(PMID:7758948)		 Ensembl
MGI		 PMID:7758948 PMID:9729491 GO_REF:0000107 NCBI chr 7:28,065,570...28,138,734
Ensembl chr 7:28,068,711...28,138,787 		JBrowse link
G PRRX2 paired related homeobox 2 acts_upstream_of_or_within ISO (PMID:9729491) MGI PMID:9729491 NCBI chr 9:54,089,046...54,112,595
Ensembl chr 9:54,093,163...54,096,348 		JBrowse link
G RUNX2 RUNX family transcription factor 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15030764) Ensembl
MGI		 PMID:15030764 GO_REF:0000107 NCBI chr12:13,723,535...13,842,565
Ensembl chr12:13,628,539...13,840,785
Ensembl chr12:13,628,539...13,840,785 		JBrowse link
G SETD2 SET domain containing 2, histone lysine methyltransferase involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20133625) Ensembl
MGI		 PMID:20133625 GO_REF:0000107 NCBI chr20:41,675,539...41,800,697
Ensembl chr20:41,675,599...41,800,612 		JBrowse link
G SIX1 SIX homeobox 1 involved_in
acts_upstream_of_or_within		 ISS
ISO
IEA		 (PMID:20515681) UniProt
MGI
Ensembl		 PMID:20515681 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:35,676,705...35,679,534
Ensembl chr 8:35,676,479...35,679,534 		JBrowse link
G SIX2 SIX homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20515681) Ensembl
MGI		 PMID:20515681 GO_REF:0000107 NCBI chr10:47,399,152...47,403,503
Ensembl chr10:47,400,034...47,403,509 		JBrowse link
G SIX4 SIX homeobox 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20515681) Ensembl
MGI		 PMID:20515681 GO_REF:0000107 NCBI chr 8:35,735,893...35,748,976
Ensembl chr 8:35,737,058...35,748,893 		JBrowse link
G SLC39A1 solute carrier family 39 member 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16652366) Ensembl
MGI		 PMID:16652366 GO_REF:0000107 NCBI chr 7:43,171,219...43,174,876
Ensembl chr 7:43,171,287...43,174,036 		JBrowse link
G SLC39A3 solute carrier family 39 member 3 acts_upstream_of_or_within ISO (PMID:16652366) MGI PMID:16652366 NCBI chr20:56,458,318...56,464,099
Ensembl chr20:56,458,035...56,463,922 		JBrowse link
G SMAD2 SMAD family member 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15183723) Ensembl
MGI		 PMID:15183723 GO_REF:0000107 NCBI chr 7:43,696,883...43,778,063
Ensembl chr 7:43,700,445...43,769,983 		JBrowse link
G SMAD3 SMAD family member 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15183723) Ensembl
MGI		 PMID:15183723 GO_REF:0000107 NCBI chr30:31,246,313...31,360,098
Ensembl chr30:31,245,657...31,363,337 		JBrowse link
G TBX1 T-box transcription factor 1 acts_upstream_of_or_within ISO (PMID:15190012) MGI PMID:15190012 NCBI chr26:29,529,071...29,533,240
Ensembl chr26:29,528,878...29,532,784 		JBrowse link
G TBX15 T-box transcription factor 15 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15728667) Ensembl
MGI		 PMID:15728667 GO_REF:0000107 NCBI chr17:56,079,739...56,190,417
Ensembl chr17:56,081,411...56,204,192 		JBrowse link
G TFAP2A transcription factor AP-2 alpha involved_in
acts_upstream_of_or_within		 ISO (MGI:80519|PMID:8622766)
(PMID:8622765)		 UniProt
MGI		 PMID:8622765 PMID:8622766 MGI:80519 NCBI chr35:10,157,043...10,180,484
Ensembl chr35:10,157,882...10,180,270 		JBrowse link
G TGFBR1 transforming growth factor beta receptor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16806156) Ensembl
MGI		 PMID:16806156 GO_REF:0000107 NCBI chr11:56,191,383...56,223,042
Ensembl chr11:56,161,772...56,218,594 		JBrowse link
G TGFBR2 transforming growth factor beta receptor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr23:13,886,869...13,946,480
Ensembl chr23:13,889,000...13,977,636 		JBrowse link
G TWIST1 twist family bHLH transcription factor 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15030764) Ensembl
MGI		 PMID:15030764 GO_REF:0000107
G TWIST2 twist family bHLH transcription factor 2 acts_upstream_of_or_within ISO (PMID:15030764) MGI PMID:15030764 NCBI chr25:49,165,450...49,216,545
Ensembl chr25:49,165,641...49,166,123 		JBrowse link
G WDR19 WD repeat domain 19 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:22228095) Ensembl
MGI		 PMID:22228095 GO_REF:0000107 NCBI chr 3:73,115,560...73,213,823
Ensembl chr 3:73,137,250...73,221,512 		JBrowse link
G WNT9B Wnt family member 9B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16054034)
(PMID:16998816)		 Ensembl
MGI		 PMID:16054034 PMID:16998816 GO_REF:0000107 NCBI chr 9:10,157,607...10,172,664
Ensembl chr 9:10,149,842...10,172,654 		JBrowse link
embryonic neurocranium morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FGF8 fibroblast growth factor 8 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27395007) Ensembl
MGI		 PMID:27395007 GO_REF:0000107 NCBI chr28:14,362,407...14,367,109
Ensembl chr28:14,362,109...14,367,468 		JBrowse link
G FUZ fuzzy planar cell polarity protein acts_upstream_of_or_within ISO (PMID:27395007) MGI PMID:27395007 NCBI chr 1:106,742,381...106,752,543
Ensembl chr 1:106,747,860...106,805,699 		JBrowse link
G GLI3 GLI family zinc finger 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:27395007) Ensembl
MGI		 PMID:27395007 GO_REF:0000107 NCBI chr18:7,800,817...8,071,531
Ensembl chr18:7,801,394...8,068,132 		JBrowse link
G HOXA1 homeobox A1 involved_in ISO (PMID:16155570) DFLAT PMID:16155570 NCBI chr14:40,267,033...40,272,212
Ensembl chr14:40,267,528...40,269,681 		JBrowse link
G MED12 mediator complex subunit 12 acts_upstream_of_or_within ISO (PMID:20589884) MGI PMID:20589884 NCBI chr  X:55,487,629...55,508,941
Ensembl chr  X:55,482,013...55,509,992 		JBrowse link
G MTHFD1L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:41,316,247...41,495,226
Ensembl chr 1:41,309,419...41,495,216 		JBrowse link
G NDST1 N-deacetylase and N-sulfotransferase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16020517) Ensembl
MGI		 PMID:16020517 GO_REF:0000107 NCBI chr 4:58,580,231...58,639,750
Ensembl chr 4:58,532,148...58,640,191 		JBrowse link
G TGFB2 transforming growth factor beta 2 ISO RGD PMID:11002343 RGD:1579866 NCBI chr38:13,430,832...13,511,655
Ensembl chr38:13,429,148...13,510,242 		JBrowse link
G TGFB3 transforming growth factor beta 3 ISO RGD PMID:11002343 RGD:1579866 NCBI chr 8:48,920,874...48,946,037
Ensembl chr 8:48,923,423...48,945,816 		JBrowse link
G TULP3 TUB like protein 3 acts_upstream_of_or_within ISO (PMID:19286674) MGI PMID:19286674 NCBI chr27:41,819,574...41,884,198
Ensembl chr27:41,819,455...41,884,097 		JBrowse link
embryonic skeletal joint morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AXIN1 axin 1 acts_upstream_of_or_within ISO MGI MGI:48782 NCBI chr 6:40,155,797...40,218,330
Ensembl chr 6:40,158,244...40,218,343 		JBrowse link
G BMP4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9664686) Ensembl
MGI		 PMID:9664686 GO_REF:0000107 NCBI chr 8:29,997,563...30,254,307
Ensembl chr 8:29,997,569...30,004,557 		JBrowse link
G BMP7 bone morphogenetic protein 7 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9664686) Ensembl
MGI		 PMID:9664686 GO_REF:0000107 NCBI chr24:42,203,183...42,294,105
Ensembl chr24:42,204,823...42,294,653 		JBrowse link
G COL2A1 collagen type II alpha 1 chain involved_in IEA Ensembl GO_REF:0000107 NCBI chr27:6,756,994...6,787,733
Ensembl chr27:6,756,994...6,787,733 		JBrowse link
G HOXA11 homeobox A11 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20978074) Ensembl
MGI		 PMID:20978074 GO_REF:0000107 NCBI chr14:40,355,907...40,360,120
Ensembl chr14:40,357,478...40,359,919 		JBrowse link
G HOXC11 homeobox C11 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:20978074) Ensembl
MGI		 PMID:20978074 GO_REF:0000107 NCBI chr27:1,287,326...1,289,577
Ensembl chr27:1,287,380...1,289,372 		JBrowse link
G HOXD11 homeobox D11 acts_upstream_of_or_within ISO (PMID:20978074) MGI PMID:20978074 NCBI chr36:19,913,064...19,926,868
Ensembl chr36:19,914,431...19,916,766 		JBrowse link
G HYAL1 hyaluronidase 1 acts_upstream_of_or_within ISO (PMID:18772348) MGI PMID:18772348 NCBI chr20:39,035,924...39,040,443
Ensembl chr20:39,038,514...39,040,368 		JBrowse link
G NOG noggin involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:31,453,604...31,456,060 JBrowse link
G OSR1 odd-skipped related transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:14,508,543...14,515,657
Ensembl chr17:14,509,333...14,589,228 		JBrowse link
G OSR2 odd-skipped related transciption factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:1,019,167...1,031,622
Ensembl chr13:1,023,879...1,031,225 		JBrowse link
G SHOX2 SHOX homeobox 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18514492) Ensembl
MGI		 PMID:18514492 GO_REF:0000107 NCBI chr23:51,484,696...51,492,586
Ensembl chr23:51,484,421...51,492,566 		JBrowse link
embryonic skeletal limb joint morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CTNNB1 catenin beta 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr23:10,559,722...10,572,933
Ensembl chr23:10,559,718...10,572,927 		JBrowse link
G OSR1 odd-skipped related transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:14,508,543...14,515,657
Ensembl chr17:14,509,333...14,589,228 		JBrowse link
G OSR2 odd-skipped related transciption factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:1,019,167...1,031,622
Ensembl chr13:1,023,879...1,031,225 		JBrowse link
embryonic viscerocranium morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CHST11 carbohydrate sulfotransferase 11 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16079159) Ensembl
MGI		 PMID:16079159 GO_REF:0000107 NCBI chr10:33,555,629...33,810,808
Ensembl chr10:33,555,628...33,810,558 		JBrowse link
G FOXC2 forkhead box C2 acts_upstream_of_or_within ISO (PMID:9409679) MGI PMID:9409679 NCBI chr 5:66,234,336...66,296,007
Ensembl chr 5:66,294,176...66,295,693 		JBrowse link
G FOXC2 forkhead box C2 involved_in IEA Ensembl GO_REF:0000107
G HOXA2 homeobox A2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16221728) Ensembl
MGI		 PMID:16221728 GO_REF:0000107 NCBI chr14:40,273,992...40,276,975
Ensembl chr14:40,274,469...40,276,239 		JBrowse link
G LHX1 LIM homeobox 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:36,760,890...36,768,345
Ensembl chr 9:36,761,826...36,768,164 		JBrowse link
G MEF2C myocyte enhancer factor 2C acts_upstream_of_or_within ISO (PMID:17420000) MGI PMID:17420000 NCBI chr 3:19,778,997...19,948,203
Ensembl chr 3:19,779,007...19,943,852 		JBrowse link
G MTHFD1L methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1 like involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:41,316,247...41,495,226
Ensembl chr 1:41,309,419...41,495,216 		JBrowse link
G NDST1 N-deacetylase and N-sulfotransferase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16020517) Ensembl
MGI		 PMID:16020517 GO_REF:0000107 NCBI chr 4:58,580,231...58,639,750
Ensembl chr 4:58,532,148...58,640,191 		JBrowse link
G NIPBL NIPBL cohesin loading factor involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:19763162) Ensembl
MGI
TreeGrafter		 PMID:19763162 GO_REF:0000107 GO_REF:0000118 NCBI chr 4:71,583,118...71,780,986
Ensembl chr 4:71,583,732...71,780,852 		JBrowse link
G RDH10 retinol dehydrogenase 10 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17473173) Ensembl
MGI		 PMID:17473173 GO_REF:0000107 NCBI chr29:21,886,014...21,912,451
Ensembl chr29:21,885,012...21,911,303 		JBrowse link
G TBX1 T-box transcription factor 1 involved_in ISO (PMID:14585638) UniProt PMID:14585638 NCBI chr26:29,529,071...29,533,240
Ensembl chr26:29,528,878...29,532,784 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17878
    developmental process 6855
      anatomical structure morphogenesis 3012
        animal organ morphogenesis 1182
          embryonic organ morphogenesis 336
            embryonic skeletal system morphogenesis 109
              embryonic cranial skeleton morphogenesis + 52
              embryonic skeletal joint morphogenesis + 13
Path 2
Term Annotations click to browse term
  biological_process 17878
    developmental process 6855
      anatomical structure development 6433
        multicellular organism development 5182
          embryo development 1347
            embryo development ending in birth or egg hatching 887
              chordate embryonic development 870
                embryonic skeletal system development 149
                  embryonic skeletal system morphogenesis 109
                    embryonic cranial skeleton morphogenesis + 52
                    embryonic skeletal joint morphogenesis + 13
paths to the root