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ONTOLOGY REPORT - ANNOTATIONS


Term:neuron fate commitment
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Accession:GO:0048663 term browser browse the term
Definition:The process in which the developmental fate of a cell becomes restricted such that it will develop into a neuron.
Synonyms:exact_synonym: neuron lineage restriction;   neuronal lineage restriction
 alt_id: GO:0042055


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neuron fate commitment term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl1 achaete-scute family bHLH transcription factor 1 ISS
ISO
GO_REF:0000024
MGI:1857470|MGI:2151057 (MGI:2651973|PMID:12629181), (MGI:3587461|PMID:16020526), (MGI:3639800|PMID:16715081), (MGI:4353883|PMID:19191219), (MGI:5897542|PMID:24243019)
UniProt
RGD
PMID:12629181 PMID:16020526 PMID:16715081 PMID:19191219 PMID:24243019 GO_REF:0000024 MGI:2651973 MGI:3587461 MGI:3639800 MGI:4353883 MGI:5897542 NCBI chr 7:28,038,662...28,040,504
Ensembl chr 7:28,038,662...28,040,510
JBrowse link
G Bmp4 bone morphogenetic protein 4 IEA
ISO
GO_REF:0000107
MGI:2158495 (MGI:3761972|PMID:17698011)
Ensembl
RGD
PMID:17698011 GO_REF:0000107 MGI:3761972 NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740
JBrowse link
G Epop elongin BC and polycomb repressive complex 2 associated protein ISO
IBA
(MGI:5507920|PMID:23180766)
PMID:21873635
RGD PMID:23180766, PMID:21873635 MGI:5507920, RGD:13792537 NCBI chr10:85,573,369...85,574,889
Ensembl chr10:85,573,369...85,574,889
JBrowse link
G Foxn4 forkhead box N4 ISO MGI:96919 (MGI:3587461|PMID:16020526) RGD PMID:16020526 MGI:3587461 NCBI chr12:48,101,012...48,121,281
Ensembl chr12:48,101,673...48,121,270
JBrowse link
G Gata2 GATA binding protein 2 ISO MGI:4818492 (MGI:3827070|PMID:19088086) RGD PMID:19088086 MGI:3827070 NCBI chr 4:120,129,028...120,142,490
Ensembl chr 4:120,133,713...120,142,488
JBrowse link
G Gbx1 gastrulation brain homeobox 1 ISO (MGI:5511092|PMID:24010020) RGD PMID:24010020 MGI:5511092 NCBI chr 4:7,173,961...7,200,752
Ensembl chr 4:7,173,961...7,200,752
JBrowse link
G Gli3 GLI family zinc finger 3 ISO MGI:1856276 (MGI:3610448|PMID:16168404) RGD PMID:16168404 MGI:3610448 NCBI chr17:52,294,942...52,569,036
Ensembl chr17:52,294,942...52,569,036
JBrowse link
G Gsx1 GS homeobox 1 ISO MGI:95843 (MGI:3639800|PMID:16715081) RGD PMID:16715081 MGI:3639800 NCBI chr12:9,605,873...9,607,168
Ensembl chr12:9,605,873...9,607,168
JBrowse link
G Gsx2 GS homeobox 2 ISO MGI:95842 (MGI:3639800|PMID:16715081) RGD PMID:16715081 MGI:3639800 NCBI chr14:35,650,985...35,652,709
Ensembl chr14:35,650,985...35,652,709
JBrowse link
G Id2 inhibitor of DNA binding 2 ISS
ISO
GO_REF:0000024
(MGI:4821067|PMID:17681138)
UniProt
RGD
PMID:17681138 GO_REF:0000024 MGI:4821067 NCBI chr 6:44,360,077...44,361,908
Ensembl chr 6:44,348,501...44,363,915
JBrowse link
G Isl1 ISL LIM homeobox 1 ISO MGI:109156 (MGI:3041365|PMID:14766174) RGD PMID:14766174 MGI:3041365 NCBI chr 2:48,488,911...48,501,217
Ensembl chr 2:48,487,736...48,501,436
JBrowse link
G Isl2 ISL LIM homeobox 2 ISO MGI:101791|MGI:3046260 (MGI:3041365|PMID:14766174) RGD PMID:14766174 MGI:3041365 NCBI chr 8:60,117,565...60,122,716
Ensembl chr 8:60,117,729...60,122,211
JBrowse link
G Lbx1 ladybird homeobox 1 ISO MGI:1352738 (MGI:2179904|PMID:12062039) RGD PMID:12062039 MGI:2179904 NCBI chr 1:264,973,315...264,975,132
Ensembl chr 1:264,973,315...264,975,132
JBrowse link
G Myt1l myelin transcription factor 1-like ISS
ISO
GO_REF:0000024
(MGI:5897487|PMID:28379941), (MGI:5897542|PMID:24243019)
UniProt
RGD
PMID:24243019 PMID:28379941 GO_REF:0000024 MGI:5897487 MGI:5897542 NCBI chr 6:48,452,385...48,843,443
Ensembl chr 6:48,452,369...48,857,936
JBrowse link
G Nkx2-1 NK2 homeobox 1 ISO MGI:3653645 (MGI:3834782|PMID:18786356), (MGI:4437145|PMID:20181579) RGD PMID:18786356 PMID:20181579 MGI:3834782 MGI:4437145 NCBI chr 6:77,418,096...77,423,383
Ensembl chr 6:77,418,096...77,421,286
JBrowse link
G Notch1 notch receptor 1 ISO MGI:99460 (MGI:3604921|PMID:16120638) RGD PMID:16120638 MGI:3604921 NCBI chr 3:3,905,562...3,951,015
Ensembl chr 3:3,905,453...3,951,025
JBrowse link
G Notch3 notch receptor 3 IEA
ISO
GO_REF:0000107
MGI:97363 (MGI:3604921|PMID:16120638)
Ensembl
RGD
PMID:16120638 GO_REF:0000107 MGI:3604921 NCBI chr 7:14,138,495...14,189,688
Ensembl chr 7:14,138,495...14,189,688
JBrowse link
G Nrg1 neuregulin 1 IEA
ISO
GO_REF:0000107
(MGI:2136155|PMID:11425901)
Ensembl
RGD
PMID:11425901 GO_REF:0000107 MGI:2136155 NCBI chr16:62,969,573...64,065,063
Ensembl chr16:63,837,216...64,057,434
JBrowse link
G Olig1 oligodendrocyte transcription factor 1 IEA
ISO
GO_REF:0000107
MGI:2179311 (MGI:2177979|PMID:11955448)
Ensembl
RGD
PMID:11955448 GO_REF:0000107 MGI:2177979 NCBI chr11:31,428,377...31,430,519
Ensembl chr11:31,428,358...31,430,517
JBrowse link
G Olig2 oligodendrocyte transcription factor 2 ISO MGI:2179312 (MGI:2177979|PMID:11955448) RGD PMID:11955448 MGI:2177979 NCBI chr11:31,389,514...31,392,890
Ensembl chr11:31,389,514...31,392,890
JBrowse link
G Otx2 orthodenticle homeobox 2 ISO MGI:2178753|MGI:2446434|MGI:2661065|MGI:3665330 (MGI:3611719|PMID:16339193), (MGI:5689191|PMID:26166575) RGD PMID:16339193 PMID:26166575 MGI:3611719 MGI:5689191 NCBI chr15:25,500,037...25,511,619
Ensembl chr15:25,502,019...25,505,691
JBrowse link
G Pax3 paired box 3 ISO MGI:97491 (MGI:1321412|PMID:9858722) RGD PMID:9858722 MGI:1321412 NCBI chr 9:84,004,004...84,101,226
Ensembl chr 9:84,005,183...84,101,172
JBrowse link
G Pax7 paired box 7 ISO MGI:97487 (MGI:1321412|PMID:9858722) RGD PMID:9858722 MGI:1321412 NCBI chr 5:158,211,001...158,313,510
Ensembl chr 5:158,214,616...158,313,426
JBrowse link
G Pou3f2 POU class 3 homeobox 2 ISS
ISO
GO_REF:0000024
(MGI:5897542|PMID:24243019)
UniProt
RGD
PMID:24243019 GO_REF:0000024 MGI:5897542 NCBI chr 5:36,677,452...36,683,356
Ensembl chr 5:36,681,528...36,683,356
JBrowse link
G Ptf1a pancreas associated transcription factor 1a ISO (MGI:3590363|PMID:16039563) RGD PMID:16039563 MGI:3590363 NCBI chr17:86,199,623...86,201,477
Ensembl chr17:86,199,623...86,201,477
JBrowse link
G Runx1 RUNX family transcription factor 1 ISO (MGI:5641108|PMID:25834056) RGD PMID:25834056 MGI:5641108 NCBI chr11:32,765,147...33,003,061
Ensembl chr11:32,769,165...33,003,021
JBrowse link
G Shh sonic hedgehog signaling molecule IEA
ISO
ISS
GO_REF:0000107
MGI:1934268 (MGI:3608263|PMID:16221724)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:16221724 GO_REF:0000024 GO_REF:0000107 MGI:3608263 NCBI chr 4:718,538...727,691
Ensembl chr 4:718,538...727,691
JBrowse link
G Smad4 SMAD family member 4 IEA
ISO
GO_REF:0000107
MGI:2386393|MGI:2386570 (MGI:3761972|PMID:17698011)
Ensembl
RGD
PMID:17698011 GO_REF:0000107 MGI:3761972 NCBI chr18:69,626,682...69,657,373
Ensembl chr18:69,627,757...69,671,199
JBrowse link
G Sox2 SRY-box transcription factor 2 ISO MGI:3589809 (MGI:3664123|PMID:17015430) RGD PMID:17015430 MGI:3664123 NCBI chr 2:121,165,137...121,167,545
Ensembl chr 2:121,165,137...121,167,545
JBrowse link
G Tgfb2 transforming growth factor, beta 2 ISO (MGI:3588127|PMID:15744664) RGD PMID:15744664 MGI:3588127 NCBI chr13:105,039,639...105,142,010
Ensembl chr13:105,039,853...105,141,030
JBrowse link
G Tgfbr1 transforming growth factor, beta receptor 1 ISO (MGI:3588127|PMID:15744664) RGD PMID:15744664 MGI:3588127 NCBI chr 5:63,056,071...63,119,635
Ensembl chr 5:63,050,758...63,119,635
JBrowse link
G Wnt1 Wnt family member 1 ISO MGI:2153126 (MGI:3611719|PMID:16339193) RGD PMID:16339193 MGI:3611719 NCBI chr 7:140,464,999...140,469,046
Ensembl chr 7:140,464,999...140,469,046
JBrowse link
G Zfp521 zinc finger protein 521 ISO (MGI:5641108|PMID:25834056) RGD PMID:25834056 MGI:5641108 NCBI chr18:5,022,042...5,315,242
Ensembl chr18:5,032,029...5,314,585
JBrowse link
auditory receptor cell fate commitment term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dll1 delta like canonical Notch ligand 1 NAS PMID:10878608 UniProt PMID:10878608 RGD:8553270 NCBI chr 1:57,318,621...57,326,732
Ensembl chr 1:57,318,708...57,327,379
JBrowse link
G Jag2 jagged canonical Notch ligand 2 IEA
ISO
ISS
GO_REF:0000107
(MGI:1332721|PMID:10080181)
Ensembl
RGD
PMID:10080181, PMID:10080181 GO_REF:0000107 MGI:1332721, RGD:8553713 NCBI chr 6:137,711,144...137,733,331
Ensembl chr 6:137,711,155...137,733,026
JBrowse link
G Notch1 notch receptor 1 ISO MGI:3044585|MGI:3046196 (MGI:3833041|PMID:19154718) RGD PMID:19154718 MGI:3833041 NCBI chr 3:3,905,562...3,951,015
Ensembl chr 3:3,905,453...3,951,025
JBrowse link
G Rbpj recombination signal binding protein for immunoglobulin kappa J region ISO MGI:3046196|MGI:3583755 (MGI:3833041|PMID:19154718) RGD PMID:19154718 MGI:3833041 NCBI chr14:59,657,738...59,865,427
Ensembl chr14:59,658,935...59,735,450
JBrowse link
auditory receptor cell fate determination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atoh1 atonal bHLH transcription factor 1 ISO (MGI:3611666|PMID:16407553) RGD PMID:16407553 MGI:3611666 NCBI chr 4:95,498,003...95,500,098
Ensembl chr 4:95,498,003...95,500,089
JBrowse link
auditory receptor cell fate specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atoh1 atonal bHLH transcription factor 1 ISO MGI:2155983 (MGI:1339217|PMID:10364557) RGD PMID:10364557 MGI:1339217 NCBI chr 4:95,498,003...95,500,098
Ensembl chr 4:95,498,003...95,500,089
JBrowse link
camera-type eye photoreceptor cell fate commitment term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ihh Indian hedgehog signaling molecule ISO MGI:1934258 (MGI:3807419|PMID:18582859) RGD PMID:18582859 MGI:3807419 NCBI chr 9:82,208,223...82,214,440
Ensembl chr 9:82,208,223...82,214,440
JBrowse link
cerebral cortex GABAergic interneuron fate commitment term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dlx1 distal-less homeobox 1 IEA
ISO
GO_REF:0000107
MGI:94902 (MGI:3775335|PMID:17678855)
Ensembl
RGD
PMID:17678855 GO_REF:0000107 MGI:3775335 NCBI chr 3:58,164,931...58,169,521
Ensembl chr 3:58,164,931...58,169,521
JBrowse link
G Dlx2 distal-less homeobox 2 IEA
ISO
GO_REF:0000107
MGI:94901 (MGI:3775335|PMID:17678855)
Ensembl
RGD
PMID:17678855 GO_REF:0000107 MGI:3775335 NCBI chr 3:58,180,088...58,181,971
Ensembl chr 3:58,180,088...58,181,971
JBrowse link
commitment of neuronal cell to specific neuron type in forebrain term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl1 achaete-scute family bHLH transcription factor 1 ISO MGI:1857470 (MGI:5439194|PMID:22991444) RGD PMID:22991444 MGI:5439194 NCBI chr 7:28,038,662...28,040,504
Ensembl chr 7:28,038,662...28,040,510
JBrowse link
G Bcl11b BAF chromatin remodeling complex subunit BCL11B ISO MGI:2679336 (MGI:5464968|PMID:23144223) RGD PMID:23144223 MGI:5464968 NCBI chr 6:131,834,097...131,927,251
Ensembl chr 6:131,834,097...131,926,272
JBrowse link
G Fezf2 Fez family zinc finger 2 ISO MGI:2679336|MGI:3046867|MGI:3525887 (MGI:5140686|PMID:21338885), (MGI:5464968|PMID:23144223) RGD PMID:21338885 PMID:23144223 MGI:5140686 MGI:5464968 NCBI chr15:12,825,333...12,831,496
Ensembl chr15:12,827,707...12,831,496
JBrowse link
G Gata2 GATA binding protein 2 ISO MGI:4818492 (MGI:5439194|PMID:22991444) RGD PMID:22991444 MGI:5439194 NCBI chr 4:120,129,028...120,142,490
Ensembl chr 4:120,133,713...120,142,488
JBrowse link
G Pax6 paired box 6 IEA
ISO
GO_REF:0000107
MGI:1856158 (MGI:1928687|PMID:11124115)
Ensembl
RGD
PMID:11124115 GO_REF:0000107 MGI:1928687 NCBI chr 3:95,700,241...95,728,682
Ensembl chr 3:95,707,386...95,728,624
JBrowse link
G Satb2 SATB homeobox 2 ISO MGI:107404|MGI:1859823|MGI:1929913|MGI:3692768 (MGI:5464968|PMID:23144223) RGD PMID:23144223 MGI:5464968 NCBI chr 9:63,456,877...63,642,193
Ensembl chr 9:63,456,783...63,641,400
JBrowse link
G Tbr1 T-box brain transcription factor 1 ISO
IBA
MGI:2679336 (MGI:5464968|PMID:23144223)
PMID:21873635
RGD PMID:23144223, PMID:21873635 MGI:5464968, RGD:13792537 NCBI chr 3:47,677,720...47,685,902
Ensembl chr 3:47,677,720...47,685,902
JBrowse link
eye photoreceptor cell fate commitment term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Otx2 orthodenticle homeobox 2 ISO MGI:2178753 (MGI:2680889|PMID:14625556) RGD PMID:14625556 MGI:2680889 NCBI chr15:25,500,037...25,511,619
Ensembl chr15:25,502,019...25,505,691
JBrowse link
forebrain neuron fate commitment term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lhx6 LIM homeobox 6 ISO MGI:108067 (MGI:3794908|PMID:18339674) RGD PMID:18339674 MGI:3794908 NCBI chr 3:15,409,349...15,433,504
Ensembl chr 3:15,411,939...15,433,252
JBrowse link
G Nkx2-1 NK2 homeobox 1 IEA
ISO
GO_REF:0000107
MGI:1306803|MGI:1857494 (MGI:3794908|PMID:18339674)
Ensembl
RGD
PMID:18339674 GO_REF:0000107 MGI:3794908 NCBI chr 6:77,418,096...77,423,383
Ensembl chr 6:77,418,096...77,421,286
JBrowse link
G Tfap2c transcription factor AP-2 gamma ISO MGI:2176695 (MGI:4397655|PMID:19749747) RGD PMID:19749747 MGI:4397655 NCBI chr 3:170,550,314...170,558,197
Ensembl chr 3:170,550,314...170,558,194
JBrowse link
negative regulation of retinal cone cell fate commitment term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casz1 castor zinc finger 1 ISO MGI:3052661|MGI:4841554 (MGI:5629913|PMID:25654255) RGD PMID:25654255 MGI:5629913 NCBI chr 5:165,625,119...165,777,053
Ensembl chr 5:165,724,027...165,774,616
JBrowse link
neuron fate determination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdc42 cell division cycle 42 ISO MGI:3619134 (MGI:3664674|PMID:16892058) RGD PMID:16892058 MGI:3664674 NCBI chr 5:155,690,267...155,728,385
Ensembl chr 5:155,691,390...155,728,300
JBrowse link
G Fezf2 Fez family zinc finger 2 ISO (MGI:5604297|PMID:24997765) RGD PMID:24997765 MGI:5604297 NCBI chr15:12,825,333...12,831,496
Ensembl chr15:12,827,707...12,831,496
JBrowse link
G Foxg1 forkhead box G1 ISO (MGI:5440366|PMID:22726835) RGD PMID:22726835 MGI:5440366 NCBI chr 6:69,971,227...69,974,037
Ensembl chr 6:69,971,227...69,974,037
JBrowse link
G Lbx1 ladybird homeobox 1 ISO MGI:1351209|MGI:2182635 (MGI:3607682|PMID:16234809) RGD PMID:16234809 MGI:3607682 NCBI chr 1:264,973,315...264,975,132
Ensembl chr 1:264,973,315...264,975,132
JBrowse link
G Otx2 orthodenticle homeobox 2 ISO MGI:2446434|MGI:2661065 (MGI:4360136|PMID:19592574) RGD PMID:19592574 MGI:4360136 NCBI chr15:25,500,037...25,511,619
Ensembl chr15:25,502,019...25,505,691
JBrowse link
G Prrx1 paired related homeobox 1 ISO (MGI:5486509|PMID:23447615) RGD PMID:23447615 MGI:5486509 NCBI chr13:81,147,038...81,215,559
Ensembl chr13:81,147,348...81,214,546
JBrowse link
G Wnt1 Wnt family member 1 ISO MGI:3046939 (MGI:3611719|PMID:16339193) RGD PMID:16339193 MGI:3611719 NCBI chr 7:140,464,999...140,469,046
Ensembl chr 7:140,464,999...140,469,046
JBrowse link
neuron fate specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl1 achaete-scute family bHLH transcription factor 1 ISS
ISO
GO_REF:0000024
MGI:1857470 (MGI:3639051|PMID:16469766), (MGI:5897542|PMID:24243019)
UniProt
RGD
PMID:16469766 PMID:24243019 GO_REF:0000024 MGI:3639051 MGI:5897542 NCBI chr 7:28,038,662...28,040,504
Ensembl chr 7:28,038,662...28,040,510
JBrowse link
G Dll1 delta like canonical Notch ligand 1 IEA
ISO
ISS
GO_REF:0000107
(MGI:3823133|PMID:18997111)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:18997111 GO_REF:0000024 GO_REF:0000107 MGI:3823133 NCBI chr 1:57,318,621...57,326,732
Ensembl chr 1:57,318,708...57,327,379
JBrowse link
G Dmrta2 DMRT-like family A2 ISO (MGI:5013657|PMID:21576465) RGD PMID:21576465 MGI:5013657 NCBI chr 5:129,754,295...129,760,045
Ensembl chr 5:129,756,149...129,758,986
JBrowse link
G Ehmt2 euchromatic histone lysine methyltransferase 2 ISO MGI:4418499 (MGI:5577209|PMID:24584053) RGD PMID:24584053 MGI:5577209 NCBI chr20:4,576,033...4,592,980
Ensembl chr20:4,576,057...4,592,980
JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 ISO MGI:102780 (MGI:5319720|PMID:22513373) RGD PMID:22513373 MGI:5319720 NCBI chr 5:4,275,728...4,495,525
Ensembl chr 5:4,373,626...4,513,142
JBrowse link
G Fev FEV transcription factor, ETS family member ISO MGI:2449922 (MGI:4836772|PMID:20818386) RGD PMID:20818386 MGI:4836772 NCBI chr 9:82,142,981...82,146,855
Ensembl chr 9:82,142,981...82,146,874
JBrowse link
G Foxa1 forkhead box A1 IEA
ISO
GO_REF:0000107
MGI:1347476 (MGI:3720545|PMID:17596284)
Ensembl
RGD
PMID:17596284 GO_REF:0000107 MGI:3720545 NCBI chr 6:78,516,579...78,549,669
Ensembl chr 6:78,545,804...78,549,669
JBrowse link
G Foxa2 forkhead box A2 ISO MGI:1347472|MGI:2176222|MGI:2177337 (MGI:3720545|PMID:17596284), (MGI:3767119|PMID:17922007) RGD PMID:17596284 PMID:17922007 MGI:3720545 MGI:3767119 NCBI chr 3:142,383,084...142,387,493
Ensembl chr 3:142,383,278...142,387,481
JBrowse link
G Gsx2 GS homeobox 2 ISO MGI:2150162 (MGI:3579956|PMID:15930101) RGD PMID:15930101 MGI:3579956 NCBI chr14:35,650,985...35,652,709
Ensembl chr14:35,650,985...35,652,709
JBrowse link
G Isl1 ISL LIM homeobox 1 ISO
IBA
(MGI:3815381|PMID:18849985)
PMID:21873635
RGD PMID:18849985, PMID:21873635 MGI:3815381, RGD:13792537 NCBI chr 2:48,488,911...48,501,217
Ensembl chr 2:48,487,736...48,501,436
JBrowse link
G Isl2 ISL LIM homeobox 2 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:60,117,565...60,122,716
Ensembl chr 8:60,117,729...60,122,211
JBrowse link
G Myt1l myelin transcription factor 1-like ISS
ISO
GO_REF:0000024
(MGI:5897487|PMID:28379941), (MGI:5897542|PMID:24243019)
UniProt
RGD
PMID:24243019 PMID:28379941 GO_REF:0000024 MGI:5897487 MGI:5897542 NCBI chr 6:48,452,385...48,843,443
Ensembl chr 6:48,452,369...48,857,936
JBrowse link
G Nkx2-2 NK2 homeobox 2 ISO MGI:1932100|MGI:97451 (MGI:3611719|PMID:16339193), (MGI:4360136|PMID:19592574) RGD PMID:16339193 PMID:19592574 MGI:3611719 MGI:4360136 NCBI chr 3:141,408,460...141,419,083
Ensembl chr 3:141,408,798...141,411,170
JBrowse link
G Ntrk3 neurotrophic receptor tyrosine kinase 3 IMP RGD PMID:15247919 RGD:2325628 NCBI chr 1:139,890,537...140,262,503
Ensembl chr 1:139,890,560...140,262,503
JBrowse link
G Pou3f2 POU class 3 homeobox 2 IEA
ISO
ISS
GO_REF:0000107
(MGI:5897542|PMID:24243019)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:24243019 GO_REF:0000024 GO_REF:0000107 MGI:5897542 NCBI chr 5:36,677,452...36,683,356
Ensembl chr 5:36,681,528...36,683,356
JBrowse link
G Pou4f1 POU class 4 homeobox 1 IEA
ISO
GO_REF:0000107
(MGI:4367920|PMID:19877281), (MGI:4454975|PMID:20096094)
Ensembl
RGD
PMID:19877281 PMID:20096094 GO_REF:0000107 MGI:4367920 MGI:4454975 NCBI chr15:88,618,255...88,622,712
Ensembl chr15:88,620,470...88,622,413
JBrowse link
G Six1 SIX homeobox 1 ISO MGI:109344 (MGI:5319720|PMID:22513373) RGD PMID:22513373 MGI:5319720 NCBI chr 6:95,929,060...95,934,296
Ensembl chr 6:95,929,060...95,934,296
JBrowse link
G Tlx3 T-cell leukemia, homeobox 3 ISO MGI:104867 (MGI:3607682|PMID:16234809) RGD PMID:16234809 MGI:3607682 NCBI chr10:18,128,869...18,131,745
Ensembl chr10:18,129,408...18,131,562
JBrowse link
noradrenergic neuron fate commitment term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl1 achaete-scute family bHLH transcription factor 1 ISO (PMID:14532329) RGD PMID:14532329 NCBI chr 7:28,038,662...28,040,504
Ensembl chr 7:28,038,662...28,040,510
JBrowse link
regulation of inner ear auditory receptor cell fate specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Esrp1 epithelial splicing regulatory protein 1 ISS
ISO
GO_REF:0000024
(MGI:5915403|PMID:29107558)
UniProt
RGD
PMID:29107558 GO_REF:0000024 MGI:5915403 NCBI chr 5:24,576,988...24,631,758
Ensembl chr 5:24,576,991...24,631,698
JBrowse link
retinal rod cell fate commitment term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casz1 castor zinc finger 1 ISO MGI:3052661|MGI:4841554 (MGI:5629913|PMID:25654255) RGD PMID:25654255 MGI:5629913 NCBI chr 5:165,625,119...165,777,053
Ensembl chr 5:165,724,027...165,774,616
JBrowse link
smoothened signaling pathway involved in spinal cord motor neuron cell fate specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli2 GLI family zinc finger 2 ISO MGI:95729 (MGI:3051712|PMID:15215207) RGD PMID:15215207 MGI:3051712 NCBI chr13:34,829,021...35,049,172
Ensembl chr13:34,829,139...35,048,444
JBrowse link
G Gli3 GLI family zinc finger 3 ISO MGI:95728 (MGI:3051712|PMID:15215207) RGD PMID:15215207 MGI:3051712 NCBI chr17:52,294,942...52,569,036
Ensembl chr17:52,294,942...52,569,036
JBrowse link
G Sufu SUFU negative regulator of hedgehog signaling ISO MGI:4840420 (MGI:4355593|PMID:19684112) RGD PMID:19684112 MGI:4355593 NCBI chr 1:266,143,766...266,241,742
Ensembl chr 1:266,143,818...266,239,016
JBrowse link
smoothened signaling pathway involved in ventral spinal cord interneuron specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli2 GLI family zinc finger 2 ISO MGI:95729 (MGI:3051712|PMID:15215207) RGD PMID:15215207 MGI:3051712 NCBI chr13:34,829,021...35,049,172
Ensembl chr13:34,829,139...35,048,444
JBrowse link
G Gli3 GLI family zinc finger 3 ISO MGI:95728 (MGI:3051712|PMID:15215207) RGD PMID:15215207 MGI:3051712 NCBI chr17:52,294,942...52,569,036
Ensembl chr17:52,294,942...52,569,036
JBrowse link
G Sufu SUFU negative regulator of hedgehog signaling ISO MGI:4840420 (MGI:4355593|PMID:19684112) RGD PMID:19684112 MGI:4355593 NCBI chr 1:266,143,766...266,241,742
Ensembl chr 1:266,143,818...266,239,016
JBrowse link
spinal cord motor neuron cell fate specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hoxc10 homeo box C10 ISO MGI:96202 (MGI:3771768|PMID:18065432) RGD PMID:18065432 MGI:3771768 NCBI chr 7:144,577,578...144,582,802
Ensembl chr 7:144,577,465...144,582,622
JBrowse link
G Hoxd10 homeo box D10 ISO MGI:96192 (MGI:3771768|PMID:18065432) RGD PMID:18065432 MGI:3771768 NCBI chr 3:61,614,133...61,617,342
Ensembl chr 3:61,613,774...61,617,367
JBrowse link
G Isl1 ISL LIM homeobox 1 ISO MGI:102673 (MGI:4356383|PMID:19666821) RGD PMID:19666821 MGI:4356383 NCBI chr 2:48,488,911...48,501,217
Ensembl chr 2:48,487,736...48,501,436
JBrowse link
G Isl2 ISL LIM homeobox 2 IEA
ISO
GO_REF:0000107
MGI:102673 (MGI:4356383|PMID:19666821)
Ensembl
RGD
PMID:19666821 GO_REF:0000107 MGI:4356383 NCBI chr 8:60,117,565...60,122,716
Ensembl chr 8:60,117,729...60,122,211
JBrowse link
G Lhx3 LIM homeobox 3 ISO MGI:101791|MGI:109156 (MGI:4356383|PMID:19666821) RGD PMID:19666821 MGI:4356383 NCBI chr 3:3,653,861...3,662,509
Ensembl chr 3:3,654,755...3,661,810
JBrowse link
G Mnx1 motor neuron and pancreas homeobox 1 ISO
IBA
MGI:2182358|MGI:2182361|MGI:2182363 (MGI:1344237|PMID:10482234)
PMID:21873635
RGD PMID:10482234, PMID:21873635 MGI:1344237, RGD:13792537 NCBI chr 4:2,376,350...2,381,308
Ensembl chr 4:2,376,958...2,381,271
JBrowse link
G Olig3 oligodendrocyte transcription factor 3 ISO MGI:3573868 (MGI:3531376|PMID:15769945) RGD PMID:15769945 MGI:3531376 NCBI chr 1:14,797,766...14,799,835
Ensembl chr 1:14,797,766...14,799,835
JBrowse link
subpallium neuron fate commitment term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl1 achaete-scute family bHLH transcription factor 1 ISO MGI:1857470 (MGI:1321050|PMID:9876181) RGD PMID:9876181 MGI:1321050 NCBI chr 7:28,038,662...28,040,504
Ensembl chr 7:28,038,662...28,040,510
JBrowse link
G Gsx2 GS homeobox 2 ISO MGI:2150162 (MGI:1928687|PMID:11124115) RGD PMID:11124115 MGI:1928687 NCBI chr14:35,650,985...35,652,709
Ensembl chr14:35,650,985...35,652,709
JBrowse link
ventral spinal cord interneuron fate commitment term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl1 achaete-scute family bHLH transcription factor 1 ISS
ISO
GO_REF:0000024
(MGI:3587461|PMID:16020526)
UniProt
RGD
PMID:16020526 GO_REF:0000024 MGI:3587461 NCBI chr 7:28,038,662...28,040,504
Ensembl chr 7:28,038,662...28,040,510
JBrowse link
G Dll4 delta like canonical Notch ligand 4 ISO UniProtKB:Q8K3Q3 (PMID:17728344) RGD PMID:17728344 NCBI chr 3:111,135,011...111,146,746
Ensembl chr 3:111,135,021...111,145,986
JBrowse link
G Foxn4 forkhead box N4 ISO (MGI:3587461|PMID:16020526), (MGI:3765356|PMID:17728344) RGD PMID:16020526 PMID:17728344 MGI:3587461 MGI:3765356 NCBI chr12:48,101,012...48,121,281
Ensembl chr12:48,101,673...48,121,270
JBrowse link
ventral spinal cord interneuron fate determination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nkx2-2 NK2 homeobox 2 ISO MGI:1932100 (MGI:1334824|PMID:10217145) RGD PMID:10217145 MGI:1334824 NCBI chr 3:141,408,460...141,419,083
Ensembl chr 3:141,408,798...141,411,170
JBrowse link
ventral spinal cord interneuron specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dbx1 developing brain homeobox 1 ISO MGI:2182329 (MGI:2136554|PMID:11239429) RGD PMID:11239429 MGI:2136554 NCBI chr 1:104,969,218...104,973,648
Ensembl chr 1:104,969,218...104,973,648
JBrowse link
G Dmrt3 doublesex and mab-3 related transcription factor 3 ISO MGI:4420993 (MGI:5435948|PMID:22932389) RGD PMID:22932389 MGI:5435948 NCBI chr 1:243,589,607...243,602,926
Ensembl chr 1:243,589,607...243,602,926
JBrowse link
G Lhx3 LIM homeobox 3 ISO (MGI:4356383|PMID:19666821) RGD PMID:19666821 MGI:4356383 NCBI chr 3:3,653,861...3,662,509
Ensembl chr 3:3,654,755...3,661,810
JBrowse link
G Shh sonic hedgehog signaling molecule IDA PMID:9230312 MGI PMID:9230312 RGD:8553789 NCBI chr 4:718,538...727,691
Ensembl chr 4:718,538...727,691
JBrowse link
G Sox1 SRY-box transcription factor 1 ISO MGI:3653406 (MGI:4834949|PMID:20844123) RGD PMID:20844123 MGI:4834949

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20030
    cellular process 18802
      cellular developmental process 4458
        cell fate commitment 282
          neuron fate commitment 74
            cardiac neuron fate commitment 0
            cerebral cortex GABAergic interneuron fate commitment 2
            forebrain neuron fate commitment + 10
            inner ear receptor cell fate commitment + 6
            neuron fate determination + 9
            neuron fate specification + 32
            noradrenergic neuron fate commitment + 1
            olfactory bulb interneuron fate commitment 0
            photoreceptor cell fate commitment + 3
            somatic motor neuron fate commitment + 0
            subpallium neuron fate commitment 2
            ventral spinal cord interneuron fate commitment + 12
Path 2
Term Annotations click to browse term
  biological_process 20030
    developmental process 6828
      anatomical structure development 6270
        multicellular organism development 5744
          system development 5280
            nervous system development 2720
              neurogenesis 1936
                generation of neurons 1780
                  neuron differentiation 1614
                    neuron fate commitment 74
                      cardiac neuron fate commitment 0
                      cerebral cortex GABAergic interneuron fate commitment 2
                      forebrain neuron fate commitment + 10
                      inner ear receptor cell fate commitment + 6
                      neuron fate determination + 9
                      neuron fate specification + 32
                      noradrenergic neuron fate commitment + 1
                      olfactory bulb interneuron fate commitment 0
                      photoreceptor cell fate commitment + 3
                      somatic motor neuron fate commitment + 0
                      subpallium neuron fate commitment 2
                      ventral spinal cord interneuron fate commitment + 12
paths to the root