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ONTOLOGY REPORT - ANNOTATIONS


Term:neuron fate commitment
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Accession:GO:0048663 term browser browse the term
Definition:The process in which the developmental fate of a cell becomes restricted such that it will develop into a neuron.
Synonyms:exact_synonym: neuron lineage restriction;   neuronal lineage restriction
 alt_id: GO:0042055


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neuron fate commitment term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl1 achaete-scute family bHLH transcription factor 1 IGI
IDA
IMP
(MGI:3587461|PMID:16020526)
(MGI:5897542|PMID:24243019)
(MGI:2651973|PMID:12629181), (MGI:3639800|PMID:16715081), (MGI:4353883|PMID:19191219)
MGI
UniProt
PMID:12629181, PMID:16020526, PMID:16715081, PMID:19191219, PMID:24243019 MGI:2651973, MGI:3587461, MGI:3639800, MGI:4353883, MGI:5897542 NCBI chr10:87,490,819...87,493,660
Ensembl chr10:87,490,819...87,493,660
JBrowse link
G Bmp4 bone morphogenetic protein 4 IMP
IDA
(MGI:3761972|PMID:17698011) MGI PMID:17698011 MGI:3761972 NCBI chr14:46,383,525...46,390,669
Ensembl chr14:46,383,520...46,390,669
JBrowse link
G Epop elongin BC and polycomb repressive complex 2 associated protein IBA
IMP
IDA
(MGI:6201960|PMID:21873635)
(MGI:5507920|PMID:23180766)
GO_Central
MGI
PMID:21873635, PMID:23180766 MGI:5507920, MGI:6201960 NCBI chr11:97,627,387...97,629,716
Ensembl chr11:97,627,389...97,629,702
JBrowse link
G Foxn4 forkhead box N4 IGI (MGI:3587461|PMID:16020526) MGI PMID:16020526 MGI:3587461 NCBI chr 5:114,254,164...114,274,418
Ensembl chr 5:114,254,164...114,273,807
JBrowse link
G Gata2 GATA binding protein 2 IMP (MGI:3827070|PMID:19088086) MGI PMID:19088086 MGI:3827070 NCBI chr 6:88,193,891...88,207,032
Ensembl chr 6:88,193,891...88,207,032
JBrowse link
G Gbx1 gastrulation brain homeobox 1 IMP (MGI:5511092|PMID:24010020) MGI PMID:24010020 MGI:5511092 NCBI chr 5:24,504,426...24,526,848
Ensembl chr 5:24,502,757...24,527,202
JBrowse link
G Gli3 GLI-Kruppel family member GLI3 IMP (MGI:3610448|PMID:16168404) MGI PMID:16168404 MGI:3610448 NCBI chr13:15,463,723...15,730,026
Ensembl chr13:15,463,235...15,730,026
JBrowse link
G Gsx1 GS homeobox 1 IGI (MGI:3639800|PMID:16715081) MGI PMID:16715081 MGI:3639800 NCBI chr 5:147,188,696...147,190,947
Ensembl chr 5:147,188,696...147,190,947
JBrowse link
G Gsx2 GS homeobox 2 IGI (MGI:3639800|PMID:16715081) MGI PMID:16715081 MGI:3639800 NCBI chr 5:75,075,601...75,077,893
Ensembl chr 5:75,075,601...75,077,893
JBrowse link
G Id2 inhibitor of DNA binding 2 IMP (MGI:4821067|PMID:17681138) UniProt PMID:17681138 MGI:4821067 NCBI chr12:25,093,799...25,096,092
Ensembl chr12:25,093,799...25,097,140
JBrowse link
G Isl1 ISL1 transcription factor, LIM/homeodomain IGI (MGI:3041365|PMID:14766174) MGI PMID:14766174 MGI:3041365 NCBI chr13:116,298,270...116,309,688
Ensembl chr13:116,298,281...116,309,689
JBrowse link
G Isl2 insulin related protein 2 (islet 2) IMP
IGI
(MGI:3041365|PMID:14766174) MGI PMID:14766174 MGI:3041365 NCBI chr 9:55,538,677...55,547,667
Ensembl chr 9:55,538,672...55,546,180
JBrowse link
G Lbx1 ladybird homeobox 1 IMP (MGI:2179904|PMID:12062039) MGI PMID:12062039 MGI:2179904 NCBI chr19:45,232,684...45,236,841
Ensembl chr19:45,232,684...45,235,812
JBrowse link
G Myt1l myelin transcription factor 1-like IDA (MGI:5897487|PMID:28379941), (MGI:5897542|PMID:24243019) UniProt PMID:24243019, PMID:28379941 MGI:5897487, MGI:5897542 NCBI chr12:29,527,590...29,923,216
Ensembl chr12:29,528,384...29,923,213
JBrowse link
G Nkx2-1 NK2 homeobox 1 IMP (MGI:3834782|PMID:18786356), (MGI:4437145|PMID:20181579) MGI PMID:18786356, PMID:20181579 MGI:3834782, MGI:4437145 NCBI chr12:56,531,935...56,536,908
Ensembl chr12:56,531,958...56,536,908
JBrowse link
G Notch1 notch 1 IGI (MGI:3604921|PMID:16120638) MGI PMID:16120638 MGI:3604921 NCBI chr 2:26,457,902...26,503,822
Ensembl chr 2:26,457,903...26,516,663
JBrowse link
G Notch3 notch 3 IGI (MGI:3604921|PMID:16120638) MGI PMID:16120638 MGI:3604921 NCBI chr17:32,120,820...32,166,896
Ensembl chr17:32,120,820...32,166,852
JBrowse link
G Nrg1 neuregulin 1 IMP (MGI:2136155|PMID:11425901) MGI PMID:11425901 MGI:2136155 NCBI chr 8:31,807,452...32,891,609
Ensembl chr 8:31,814,551...32,884,797
JBrowse link
G Olig1 oligodendrocyte transcription factor 1 IMP (MGI:2177979|PMID:11955448) MGI PMID:11955448 MGI:2177979 NCBI chr16:91,269,769...91,271,939
Ensembl chr16:91,269,772...91,271,933
JBrowse link
G Olig2 oligodendrocyte transcription factor 2 IMP (MGI:2177979|PMID:11955448) MGI PMID:11955448 MGI:2177979 NCBI chr16:91,225,550...91,228,677
Ensembl chr16:91,225,457...91,228,677
JBrowse link
G Otx2 orthodenticle homeobox 2 IMP (MGI:3611719|PMID:16339193)
(MGI:5689191|PMID:26166575)
MGI PMID:16339193, PMID:26166575 MGI:3611719, MGI:5689191 NCBI chr14:48,656,781...48,667,644
Ensembl chr14:48,657,677...48,673,819
JBrowse link
G Pax3 paired box 3 IGI (MGI:1321412|PMID:9858722) MGI PMID:9858722 MGI:1321412 NCBI chr 1:78,101,267...78,197,136
Ensembl chr 1:78,101,267...78,197,134
JBrowse link
G Pax7 paired box 7 IGI (MGI:1321412|PMID:9858722) MGI PMID:9858722 MGI:1321412 NCBI chr 4:139,737,059...139,833,530
Ensembl chr 4:139,737,062...139,833,528
JBrowse link
G Pou3f2 POU domain, class 3, transcription factor 2 IDA (MGI:5897542|PMID:24243019) UniProt PMID:24243019 MGI:5897542 NCBI chr 4:22,482,095...22,488,366
Ensembl chr 4:22,482,780...22,488,366
JBrowse link
G Ptf1a pancreas specific transcription factor, 1a IDA (MGI:3590363|PMID:16039563) MGI PMID:16039563 MGI:3590363 NCBI chr 2:19,445,663...19,447,501
Ensembl chr 2:19,445,663...19,447,501
JBrowse link
G Runx1 runt related transcription factor 1 IMP (MGI:5641108|PMID:25834056) MGI PMID:25834056 MGI:5641108 NCBI chr16:92,601,466...92,826,074
Ensembl chr16:92,601,466...92,826,149
JBrowse link
G Shh sonic hedgehog IMP (MGI:3608263|PMID:16221724) MGI PMID:16221724 MGI:3608263 NCBI chr 5:28,456,840...28,467,101
Ensembl chr 5:28,456,815...28,467,256
JBrowse link
G Smad4 SMAD family member 4 IMP (MGI:3761972|PMID:17698011) MGI PMID:17698011 MGI:3761972 NCBI chr18:73,634,790...73,703,791
Ensembl chr18:73,639,009...73,703,780
JBrowse link
G Sox2 SRY (sex determining region Y)-box 2 IMP (MGI:3664123|PMID:17015430) MGI PMID:17015430 MGI:3664123 NCBI chr 3:34,649,995...34,652,461
Ensembl chr 3:34,650,405...34,652,461
JBrowse link
G Tgfb2 transforming growth factor, beta 2 IDA (MGI:3588127|PMID:15744664) MGI PMID:15744664 MGI:3588127 NCBI chr 1:186,622,787...186,709,697
Ensembl chr 1:186,622,792...186,705,989
JBrowse link
G Tgfbr1 transforming growth factor, beta receptor I IMP (MGI:3588127|PMID:15744664) MGI PMID:15744664 MGI:3588127 NCBI chr 4:47,353,222...47,414,926
Ensembl chr 4:47,353,222...47,414,931
JBrowse link
G Tunar Tcl1 upstream neural differentiation associated RNA IMP (MGI:5578435|PMID:24530304) MGI PMID:24530304 MGI:5578435 NCBI chr12:105,336,594...105,383,932
Ensembl chr12:105,333,870...105,383,932
JBrowse link
G Wnt1 wingless-type MMTV integration site family, member 1 IMP (MGI:3611719|PMID:16339193) MGI PMID:16339193 MGI:3611719 NCBI chr15:98,789,857...98,793,830
Ensembl chr15:98,789,857...98,793,837
JBrowse link
G Zfp521 zinc finger protein 521 IMP (MGI:5641108|PMID:25834056) MGI PMID:25834056 MGI:5641108 NCBI chr18:13,687,013...13,972,749
Ensembl chr18:13,687,013...13,972,787
JBrowse link
auditory receptor cell fate commitment term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dll1 delta like canonical Notch ligand 1 NAS (MGI:1340935|PMID:10473135), (MGI:1353952|PMID:10704388) UniProt PMID:10473135, PMID:10704388 MGI:1340935, MGI:1353952 NCBI chr17:15,367,354...15,376,932
Ensembl chr17:15,367,354...15,376,872
JBrowse link
G Jag2 jagged 2 IMP (MGI:1332721|PMID:10080181) UniProt PMID:10080181 MGI:1332721 NCBI chr12:112,907,803...112,929,812
Ensembl chr12:112,907,819...112,929,776
JBrowse link
G Notch1 notch 1 IMP (MGI:3833041|PMID:19154718) MGI PMID:19154718 MGI:3833041 NCBI chr 2:26,457,902...26,503,822
Ensembl chr 2:26,457,903...26,516,663
JBrowse link
G Rbpj recombination signal binding protein for immunoglobulin kappa J region IMP (MGI:3833041|PMID:19154718) MGI PMID:19154718 MGI:3833041 NCBI chr 5:53,555,779...53,657,445
Ensembl chr 5:53,466,152...53,657,362
JBrowse link
auditory receptor cell fate determination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atoh1 atonal bHLH transcription factor 1 IDA (MGI:3611666|PMID:16407553) MGI PMID:16407553 MGI:3611666 NCBI chr 6:64,729,125...64,731,245
Ensembl chr 6:64,729,125...64,731,245
JBrowse link
auditory receptor cell fate specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atoh1 atonal bHLH transcription factor 1 IMP (MGI:1339217|PMID:10364557) MGI PMID:10364557 MGI:1339217 NCBI chr 6:64,729,125...64,731,245
Ensembl chr 6:64,729,125...64,731,245
JBrowse link
camera-type eye photoreceptor cell fate commitment term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ihh Indian hedgehog IMP (MGI:3807419|PMID:18582859) MGI PMID:18582859 MGI:3807419 NCBI chr 1:74,945,315...74,951,672
Ensembl chr 1:74,945,315...74,951,672
JBrowse link
cerebral cortex GABAergic interneuron fate commitment term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dlx1 distal-less homeobox 1 IGI (MGI:3775335|PMID:17678855) MGI PMID:17678855 MGI:3775335 NCBI chr 2:71,528,113...71,533,981
Ensembl chr 2:71,528,113...71,533,981
JBrowse link
G Dlx2 distal-less homeobox 2 IGI (MGI:3775335|PMID:17678855) MGI PMID:17678855 MGI:3775335 NCBI chr 2:71,543,408...71,546,754
Ensembl chr 2:71,543,408...71,546,754
JBrowse link
commitment of neuronal cell to specific neuron type in forebrain term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl1 achaete-scute family bHLH transcription factor 1 IMP (MGI:5439194|PMID:22991444) MGI PMID:22991444 MGI:5439194 NCBI chr10:87,490,819...87,493,660
Ensembl chr10:87,490,819...87,493,660
JBrowse link
G Bcl11b B cell leukemia/lymphoma 11B IGI (MGI:5464968|PMID:23144223) MGI PMID:23144223 MGI:5464968 NCBI chr12:107,910,403...108,004,145
Ensembl chr12:107,910,403...108,003,602
JBrowse link
G Fezf2 Fez family zinc finger 2 IMP
IGI
(MGI:5464968|PMID:23144223)
(MGI:5140686|PMID:21338885)
MGI PMID:21338885, PMID:23144223 MGI:5140686, MGI:5464968 NCBI chr14:12,338,992...12,346,803
Ensembl chr14:12,342,094...12,348,189
JBrowse link
G Gata2 GATA binding protein 2 IMP (MGI:5439194|PMID:22991444) MGI PMID:22991444 MGI:5439194 NCBI chr 6:88,193,891...88,207,032
Ensembl chr 6:88,193,891...88,207,032
JBrowse link
G Pax6 paired box 6 IMP (MGI:1928687|PMID:11124115) MGI PMID:11124115 MGI:1928687 NCBI chr 2:105,668,896...105,698,410
Ensembl chr 2:105,668,900...105,697,364
JBrowse link
G Satb2 special AT-rich sequence binding protein 2 IGI
IMP
(MGI:5464968|PMID:23144223) MGI PMID:23144223 MGI:5464968 NCBI chr 1:56,793,981...56,981,190
Ensembl chr 1:56,793,981...56,978,650
JBrowse link
G Tbr1 T-box brain transcription factor 1 IGI
IBA
(MGI:5464968|PMID:23144223)
(MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:21873635, PMID:23144223 MGI:5464968, MGI:6201960 NCBI chr 2:61,802,863...61,814,114
Ensembl chr 2:61,802,930...61,814,114
JBrowse link
eye photoreceptor cell fate commitment term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Otx2 orthodenticle homeobox 2 IMP (MGI:2680889|PMID:14625556) MGI PMID:14625556 MGI:2680889 NCBI chr14:48,656,781...48,667,644
Ensembl chr14:48,657,677...48,673,819
JBrowse link
forebrain neuron fate commitment term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lhx6 LIM homeobox protein 6 IGI (MGI:3794908|PMID:18339674) MGI PMID:18339674 MGI:3794908 NCBI chr 2:36,081,950...36,105,992
Ensembl chr 2:36,081,953...36,105,408
JBrowse link
G Nkx2-1 NK2 homeobox 1 IMP
IGI
(MGI:3794908|PMID:18339674) MGI PMID:18339674 MGI:3794908 NCBI chr12:56,531,935...56,536,908
Ensembl chr12:56,531,958...56,536,908
JBrowse link
G Tfap2c transcription factor AP-2, gamma IMP (MGI:4397655|PMID:19749747) MGI PMID:19749747 MGI:4397655 NCBI chr 2:172,545,678...172,558,622
Ensembl chr 2:172,549,593...172,558,622
JBrowse link
negative regulation of retinal cone cell fate commitment term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casz1 castor zinc finger 1 IMP (MGI:5629913|PMID:25654255) MGI PMID:25654255 MGI:5629913 NCBI chr 4:148,804,366...148,954,893
Ensembl chr 4:148,804,429...148,954,889
JBrowse link
neuron fate determination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdc42 cell division cycle 42 IMP (MGI:3664674|PMID:16892058) MGI PMID:16892058 MGI:3664674 NCBI chr 4:137,319,696...137,357,759
Ensembl chr 4:137,319,696...137,357,720
JBrowse link
G Fezf2 Fez family zinc finger 2 IDA (MGI:5604297|PMID:24997765) MGI PMID:24997765 MGI:5604297 NCBI chr14:12,338,992...12,346,803
Ensembl chr14:12,342,094...12,348,189
JBrowse link
G Foxg1 forkhead box G1 IDA (MGI:5440366|PMID:22726835) MGI PMID:22726835 MGI:5440366 NCBI chr12:49,382,883...49,386,867
Ensembl chr12:49,382,660...49,386,861
JBrowse link
G Lbx1 ladybird homeobox 1 IMP
IGI
(MGI:3607682|PMID:16234809) MGI PMID:16234809 MGI:3607682 NCBI chr19:45,232,684...45,236,841
Ensembl chr19:45,232,684...45,235,812
JBrowse link
G Otx2 orthodenticle homeobox 2 IMP (MGI:4360136|PMID:19592574) MGI PMID:19592574 MGI:4360136 NCBI chr14:48,656,781...48,667,644
Ensembl chr14:48,657,677...48,673,819
JBrowse link
G Prrx1 paired related homeobox 1 IDA (MGI:5486509|PMID:23447615) MGI PMID:23447615 MGI:5486509 NCBI chr 1:163,245,119...163,315,145
Ensembl chr 1:163,245,119...163,313,710
JBrowse link
G Wnt1 wingless-type MMTV integration site family, member 1 IMP (MGI:3611719|PMID:16339193) MGI PMID:16339193 MGI:3611719 NCBI chr15:98,789,857...98,793,830
Ensembl chr15:98,789,857...98,793,837
JBrowse link
neuron fate specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl1 achaete-scute family bHLH transcription factor 1 IDA
IMP
(MGI:5897542|PMID:24243019)
(MGI:3639051|PMID:16469766)
UniProt
MGI
PMID:16469766, PMID:24243019 MGI:3639051, MGI:5897542 NCBI chr10:87,490,819...87,493,660
Ensembl chr10:87,490,819...87,493,660
JBrowse link
G Dll1 delta like canonical Notch ligand 1 IDA (MGI:3823133|PMID:18997111) UniProt PMID:18997111 MGI:3823133 NCBI chr17:15,367,354...15,376,932
Ensembl chr17:15,367,354...15,376,872
JBrowse link
G Dmrta2 doublesex and mab-3 related transcription factor like family A2 IMP (MGI:5013657|PMID:21576465) MGI PMID:21576465 MGI:5013657 NCBI chr 4:109,977,989...109,983,691
Ensembl chr 4:109,978,053...109,983,687
JBrowse link
G Ehmt2 euchromatic histone lysine N-methyltransferase 2 IMP (MGI:5577209|PMID:24584053) MGI PMID:24584053 MGI:5577209 NCBI chr17:34,898,463...34,914,073
Ensembl chr17:34,898,469...34,914,052
JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 IGI (MGI:5319720|PMID:22513373) MGI PMID:22513373 MGI:5319720 NCBI chr 1:14,168,953...14,311,035
Ensembl chr 1:14,168,954...14,310,235
JBrowse link
G Fev FEV transcription factor, ETS family member IMP (MGI:4836772|PMID:20818386) MGI PMID:20818386 MGI:4836772 NCBI chr 1:74,881,501...74,885,473
Ensembl chr 1:74,881,509...74,885,419
JBrowse link
G Foxa1 forkhead box A1 IGI (MGI:3720545|PMID:17596284) MGI PMID:17596284 MGI:3720545 NCBI chr12:57,540,628...57,548,029
Ensembl chr12:57,540,628...57,546,916
JBrowse link
G Foxa2 forkhead box A2 IMP
IGI
(MGI:3767119|PMID:17922007)
(MGI:3720545|PMID:17596284)
MGI PMID:17596284, PMID:17922007 MGI:3720545, MGI:3767119 NCBI chr 2:148,042,877...148,046,969
Ensembl chr 2:148,042,877...148,046,969
JBrowse link
G Gsx2 GS homeobox 2 IMP (MGI:3579956|PMID:15930101) MGI PMID:15930101 MGI:3579956 NCBI chr 5:75,075,601...75,077,893
Ensembl chr 5:75,075,601...75,077,893
JBrowse link
G Isl1 ISL1 transcription factor, LIM/homeodomain IBA
IMP
(MGI:6201960|PMID:21873635)
(MGI:3815381|PMID:18849985)
GO_Central
BHF-UCL
PMID:18849985, PMID:21873635 MGI:3815381, MGI:6201960 NCBI chr13:116,298,270...116,309,688
Ensembl chr13:116,298,281...116,309,689
JBrowse link
G Isl2 insulin related protein 2 (islet 2) IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr 9:55,538,677...55,547,667
Ensembl chr 9:55,538,672...55,546,180
JBrowse link
G Myt1l myelin transcription factor 1-like IDA (MGI:5897487|PMID:28379941), (MGI:5897542|PMID:24243019) UniProt PMID:24243019, PMID:28379941 MGI:5897487, MGI:5897542 NCBI chr12:29,527,590...29,923,216
Ensembl chr12:29,528,384...29,923,213
JBrowse link
G Nkx2-2 NK2 homeobox 2 IMP
IGI
(MGI:4360136|PMID:19592574)
(MGI:3611719|PMID:16339193)
MGI PMID:16339193, PMID:19592574 MGI:3611719, MGI:4360136 NCBI chr 2:147,176,485...147,195,434
Ensembl chr 2:147,177,546...147,194,243
JBrowse link
G Ntrk3 neurotrophic tyrosine kinase, receptor, type 3 ISO MGI GO_REF:0000096, MGI:4417868 NCBI chr 7:78,179,986...78,581,034
Ensembl chr 7:78,175,959...78,738,012
JBrowse link
G Pou3f2 POU domain, class 3, transcription factor 2 IDA (MGI:5897542|PMID:24243019) UniProt PMID:24243019 MGI:5897542 NCBI chr 4:22,482,095...22,488,366
Ensembl chr 4:22,482,780...22,488,366
JBrowse link
G Pou4f1 POU domain, class 4, transcription factor 1 IMP (MGI:4367920|PMID:19877281), (MGI:4454975|PMID:20096094) BHF-UCL PMID:19877281, PMID:20096094 MGI:4367920, MGI:4454975 NCBI chr14:104,461,675...104,468,118
Ensembl chr14:104,461,676...104,467,999
JBrowse link
G Six1 sine oculis-related homeobox 1 IGI (MGI:5319720|PMID:22513373) MGI PMID:22513373 MGI:5319720 NCBI chr12:73,041,827...73,046,712
Ensembl chr12:73,040,015...73,053,887
JBrowse link
G Tlx3 T cell leukemia, homeobox 3 IGI (MGI:3607682|PMID:16234809) MGI PMID:16234809 MGI:3607682 NCBI chr11:33,200,752...33,203,588
Ensembl chr11:33,200,752...33,203,589
JBrowse link
noradrenergic neuron fate commitment term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl1 achaete-scute family bHLH transcription factor 1 ISO MGI GO_REF:0000096, MGI:4834177 NCBI chr10:87,490,819...87,493,660
Ensembl chr10:87,490,819...87,493,660
JBrowse link
regulation of inner ear auditory receptor cell fate specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Esrp1 epithelial splicing regulatory protein 1 IMP (MGI:5915403|PMID:29107558) UniProt PMID:29107558 MGI:5915403 NCBI chr 4:11,331,933...11,386,783
Ensembl chr 4:11,331,933...11,386,783
JBrowse link
retinal rod cell fate commitment term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casz1 castor zinc finger 1 IDA
IMP
(MGI:5629913|PMID:25654255) MGI PMID:25654255 MGI:5629913 NCBI chr 4:148,804,366...148,954,893
Ensembl chr 4:148,804,429...148,954,889
JBrowse link
smoothened signaling pathway involved in spinal cord motor neuron cell fate specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli2 GLI-Kruppel family member GLI2 IGI (MGI:3051712|PMID:15215207) MGI PMID:15215207 MGI:3051712 NCBI chr 1:118,834,061...119,054,405
Ensembl chr 1:118,834,132...119,053,619
JBrowse link
G Gli3 GLI-Kruppel family member GLI3 IGI (MGI:3051712|PMID:15215207) MGI PMID:15215207 MGI:3051712 NCBI chr13:15,463,723...15,730,026
Ensembl chr13:15,463,235...15,730,026
JBrowse link
G Sufu SUFU negative regulator of hedgehog signaling IMP (MGI:4355593|PMID:19684112) MGI PMID:19684112 MGI:4355593 NCBI chr19:46,396,896...46,488,804
Ensembl chr19:46,396,896...46,488,804
JBrowse link
smoothened signaling pathway involved in ventral spinal cord interneuron specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli2 GLI-Kruppel family member GLI2 IGI (MGI:3051712|PMID:15215207) MGI PMID:15215207 MGI:3051712 NCBI chr 1:118,834,061...119,054,405
Ensembl chr 1:118,834,132...119,053,619
JBrowse link
G Gli3 GLI-Kruppel family member GLI3 IGI (MGI:3051712|PMID:15215207) MGI PMID:15215207 MGI:3051712 NCBI chr13:15,463,723...15,730,026
Ensembl chr13:15,463,235...15,730,026
JBrowse link
G Sufu SUFU negative regulator of hedgehog signaling IMP (MGI:4355593|PMID:19684112) MGI PMID:19684112 MGI:4355593 NCBI chr19:46,396,896...46,488,804
Ensembl chr19:46,396,896...46,488,804
JBrowse link
spinal cord motor neuron cell fate specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hoxc10 homeobox C10 IGI (MGI:3771768|PMID:18065432) MGI PMID:18065432 MGI:3771768 NCBI chr15:102,966,796...102,971,898
Ensembl chr15:102,966,796...102,971,893
JBrowse link
G Hoxd10 homeobox D10 IGI (MGI:3771768|PMID:18065432) MGI PMID:18065432 MGI:3771768 NCBI chr 2:74,684,273...74,695,106
Ensembl chr 2:74,691,924...74,695,105
JBrowse link
G Isl1 ISL1 transcription factor, LIM/homeodomain IGI (MGI:4356383|PMID:19666821) MGI PMID:19666821 MGI:4356383 NCBI chr13:116,298,270...116,309,688
Ensembl chr13:116,298,281...116,309,689
JBrowse link
G Isl2 insulin related protein 2 (islet 2) IGI (MGI:4356383|PMID:19666821) MGI PMID:19666821 MGI:4356383 NCBI chr 9:55,538,677...55,547,667
Ensembl chr 9:55,538,672...55,546,180
JBrowse link
G Lhx3 LIM homeobox protein 3 IGI (MGI:4356383|PMID:19666821) MGI PMID:19666821 MGI:4356383 NCBI chr 2:26,200,212...26,208,249
Ensembl chr 2:26,200,212...26,208,289
JBrowse link
G Mnx1 motor neuron and pancreas homeobox 1 IMP
IBA
(MGI:1344237|PMID:10482234)
(MGI:6201960|PMID:21873635)
MGI
GO_Central
PMID:10482234, PMID:21873635 MGI:1344237, MGI:6201960 NCBI chr 5:29,473,823...29,478,470
Ensembl chr 5:29,473,034...29,478,470
JBrowse link
G Olig3 oligodendrocyte transcription factor 3 IMP (MGI:3531376|PMID:15769945) MGI PMID:15769945 MGI:3531376 NCBI chr10:19,356,539...19,358,604
Ensembl chr10:19,356,533...19,358,604
JBrowse link
subpallium neuron fate commitment term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl1 achaete-scute family bHLH transcription factor 1 IMP (MGI:1321050|PMID:9876181) MGI PMID:9876181 MGI:1321050 NCBI chr10:87,490,819...87,493,660
Ensembl chr10:87,490,819...87,493,660
JBrowse link
G Gsx2 GS homeobox 2 IMP (MGI:1928687|PMID:11124115) MGI PMID:11124115 MGI:1928687 NCBI chr 5:75,075,601...75,077,893
Ensembl chr 5:75,075,601...75,077,893
JBrowse link
ventral spinal cord interneuron fate commitment term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl1 achaete-scute family bHLH transcription factor 1 IMP (MGI:3587461|PMID:16020526) UniProt PMID:16020526 MGI:3587461 NCBI chr10:87,490,819...87,493,660
Ensembl chr10:87,490,819...87,493,660
JBrowse link
G Dll4 delta like canonical Notch ligand 4 ISO MGI GO_REF:0000096, MGI:4834177 NCBI chr 2:119,325,784...119,335,666
Ensembl chr 2:119,325,784...119,335,962
JBrowse link
G Foxn4 forkhead box N4 IMP (MGI:3587461|PMID:16020526), (MGI:3765356|PMID:17728344) UniProt PMID:16020526, PMID:17728344 MGI:3587461, MGI:3765356 NCBI chr 5:114,254,164...114,274,418
Ensembl chr 5:114,254,164...114,273,807
JBrowse link
ventral spinal cord interneuron fate determination term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nkx2-2 NK2 homeobox 2 IMP (MGI:1334824|PMID:10217145) MGI PMID:10217145 MGI:1334824 NCBI chr 2:147,176,485...147,195,434
Ensembl chr 2:147,177,546...147,194,243
JBrowse link
ventral spinal cord interneuron specification term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dbx1 developing brain homeobox 1 IMP (MGI:2136554|PMID:11239429) MGI PMID:11239429 MGI:2136554 NCBI chr 7:49,631,499...49,636,835
Ensembl chr 7:49,631,499...49,636,849
JBrowse link
G Dmrt3 doublesex and mab-3 related transcription factor 3 IMP (MGI:5435948|PMID:22932389) MGI PMID:22932389 MGI:5435948 NCBI chr19:25,610,246...25,623,921
Ensembl chr19:25,610,301...25,623,921
JBrowse link
G Lhx3 LIM homeobox protein 3 IDA (MGI:4356383|PMID:19666821) MGI PMID:19666821 MGI:4356383 NCBI chr 2:26,200,212...26,208,249
Ensembl chr 2:26,200,212...26,208,289
JBrowse link
G Shh sonic hedgehog ISO MGI GO_REF:0000008, MGI:2154458 NCBI chr 5:28,456,840...28,467,101
Ensembl chr 5:28,456,815...28,467,256
JBrowse link
G Sox1 SRY (sex determining region Y)-box 1 IMP (MGI:4834949|PMID:20844123) MGI PMID:20844123 MGI:4834949 NCBI chr 8:12,395,519...12,399,555
Ensembl chr 8:12,395,295...12,400,126
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 23386
    cellular process 17420
      cellular developmental process 4666
        cell fate commitment 286
          neuron fate commitment 75
            cardiac neuron fate commitment 0
            cerebral cortex GABAergic interneuron fate commitment 2
            forebrain neuron fate commitment + 10
            inner ear receptor cell fate commitment + 6
            neuron fate determination + 9
            neuron fate specification + 32
            noradrenergic neuron fate commitment + 1
            olfactory bulb interneuron fate commitment 0
            photoreceptor cell fate commitment + 3
            somatic motor neuron fate commitment + 0
            subpallium neuron fate commitment 2
            ventral spinal cord interneuron fate commitment + 12
Path 2
Term Annotations click to browse term
  biological_process 23386
    developmental process 7030
      anatomical structure development 6504
        multicellular organism development 5968
          system development 5380
            nervous system development 2722
              neurogenesis 1939
                generation of neurons 1785
                  neuron differentiation 1618
                    neuron fate commitment 75
                      cardiac neuron fate commitment 0
                      cerebral cortex GABAergic interneuron fate commitment 2
                      forebrain neuron fate commitment + 10
                      inner ear receptor cell fate commitment + 6
                      neuron fate determination + 9
                      neuron fate specification + 32
                      noradrenergic neuron fate commitment + 1
                      olfactory bulb interneuron fate commitment 0
                      photoreceptor cell fate commitment + 3
                      somatic motor neuron fate commitment + 0
                      subpallium neuron fate commitment 2
                      ventral spinal cord interneuron fate commitment + 12
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.