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ONTOLOGY REPORT - ANNOTATIONS


Term:animal organ formation
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Accession:GO:0048645 term browser browse the term
Definition:The process pertaining to the initial formation of an animal organ from unspecified parts. The process begins with the specific processes that contribute to the appearance of the discrete structure, such as inductive events, and ends when the structural rudiment of the organ is recognizable, such as a condensation of mesenchymal cells into the organ rudiment. Organs are a natural part or structure in an animal or a plant, capable of performing some special action (termed its function), which is essential to the life or well-being of the whole. The heart and lungs are organs of animals, and the petal and leaf are organs of plants. In animals the organs are generally made up of several tissues, one of which usually predominates, and determines the principal function of the organ.
Synonyms:narrow_synonym: animal organ primordium initiation;   initiation of an animal organ primordium



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animal organ formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ar androgen receptor involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3716756 (PMID:17317769)
Ensembl
RGD
PMID:17317769 GO_REF:0000107 NCBI chr  X:67,135,317...67,304,476
Ensembl chr  X:63,104,771...63,273,925
JBrowse link
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within ISO MGI:1859647 (PMID:11062007) RGD PMID:11062007 NCBI chr 2:52,533,939...52,610,980
Ensembl chr 2:50,800,992...50,876,866
JBrowse link
G Gata6 GATA binding protein 6 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:16887115)
Ensembl
RGD
PMID:16887115 GO_REF:0000107 NCBI chr18:2,460,909...2,492,322
Ensembl chr18:2,188,121...2,219,532
JBrowse link
G Hoxa3 homeobox A3 acts_upstream_of_or_within ISO MGI:1857992 (PMID:7635047) RGD PMID:7635047 NCBI chr 4:82,599,860...82,643,831
Ensembl chr 4:81,269,243...81,313,218
JBrowse link
G Nkx3-2 NK3 homeobox 2 acts_upstream_of_or_within ISO MGI:1931319 (PMID:10449756) RGD PMID:10449756 NCBI chr14:73,396,198...73,398,585
Ensembl chr14:69,183,820...69,186,061
JBrowse link
G Shh sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857796 (PMID:15013801)
Ensembl
RGD
PMID:15013801 GO_REF:0000107 NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:6,954,017...6,963,170
JBrowse link
G Tlx1 T-cell leukemia, homeobox 1 acts_upstream_of_or_within ISO MGI:3581680 (PMID:11356032) RGD PMID:11356032 NCBI chr 1:253,954,197...253,960,458
Ensembl chr 1:244,005,057...244,011,318
JBrowse link
cardioblast anterior-lateral migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mesp1 mesoderm posterior bHLH transcription factor 1 involved_in ISO (PMID:10393122) RGD PMID:10393122 NCBI chr 1:143,147,671...143,149,189
Ensembl chr 1:133,738,357...133,739,875
JBrowse link
cardioblast migration term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mesp1 mesoderm posterior bHLH transcription factor 1 acts_upstream_of_or_within ISO MGI:2182080 (PMID:10393122) RGD PMID:10393122 NCBI chr 1:143,147,671...143,149,189
Ensembl chr 1:133,738,357...133,739,875
JBrowse link
cardioblast migration to the midline involved in heart field formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mesp1 mesoderm posterior bHLH transcription factor 1 involved_in ISO (PMID:10393122) RGD PMID:10393122 NCBI chr 1:143,147,671...143,149,189
Ensembl chr 1:133,738,357...133,739,875
JBrowse link
fibroblast growth factor receptor signaling pathway involved in mammary gland specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within ISO MGI:1859647 (PMID:16720875) RGD PMID:16720875 NCBI chr 2:52,533,939...52,610,980
Ensembl chr 2:50,800,992...50,876,866
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO MGI:2153811 (PMID:16720875) RGD PMID:16720875 NCBI chr 1:194,175,703...194,280,914
Ensembl chr 1:184,745,420...184,850,626
JBrowse link
heart field specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO (PMID:26295701) RGD PMID:26295701 NCBI chr 7:86,265,651...86,544,488
Ensembl chr 7:84,375,784...84,655,357
JBrowse link
heart formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISO MGI:2158343 (PMID:16943278) RGD PMID:16943278 NCBI chr16:9,740,751...9,786,861
Ensembl chr16:9,736,630...9,780,616
JBrowse link
G Emp2 epithelial membrane protein 2 involved_in ISS
ISO
GO_REF:0000024
(PMID:30773261)
UniProt
RGD
PMID:30773261 GO_REF:0000024 NCBI chr10:5,866,869...5,901,533
Ensembl chr10:5,360,073...5,394,733
JBrowse link
G Ift88 intraflagellar transport 88 acts_upstream_of_or_within ISO MGI:1859153 (PMID:19654211) RGD PMID:19654211 NCBI chr15:35,685,678...35,786,875
Ensembl chr15:31,573,376...31,672,147
JBrowse link
G Lemd2 LEM domain nuclear envelope protein 2 involved_in ISO (PMID:25790465) RGD PMID:25790465 NCBI chr20:5,284,275...5,298,281
Ensembl chr20:5,282,397...5,296,626
JBrowse link
G Rbm20 RNA binding motif protein 20 involved_in IDA
ISO
IMP
PMID:23307558
(PMID:24584570), (PMID:27630136), (PMID:29895960), (PMID:33110103), (PMID:35041844), (PMID:35394688)
(PMID:33188278)
(PMID:22466703), (PMID:26604136), (PMID:27496873), (PMID:30948719), (PMID:32840935), (PMID:34732726)
RGD PMID:22466703 PMID:24584570 PMID:26604136 PMID:27496873 PMID:27630136 More... RGD:152025504, RGD:7241566 NCBI chr 1:252,683,760...252,907,465
Ensembl chr 1:252,683,771...252,886,060
JBrowse link
heart induction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp2 bone morphogenetic protein 2 involved_in ISO
ISS
(PMID:19736317)
GO_REF:0000024
RGD
UniProt
PMID:19736317 GO_REF:0000024 NCBI chr 3:141,264,648...141,275,416
Ensembl chr 3:120,812,882...120,821,397
JBrowse link
G Bmp4 bone morphogenetic protein 4 involved_in ISO
ISS
IEA
(PMID:20702560)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:20702560 GO_REF:0000024 GO_REF:0000107 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:19,618,542...19,623,306
JBrowse link
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 involved_in ISO (PMID:18297060) RGD PMID:18297060 NCBI chr 1:237,794,969...237,798,650
Ensembl chr 1:228,381,521...228,385,202
JBrowse link
G Gata5 GATA binding protein 5 involved_in ISO (PMID:21633169) RGD PMID:21633169 NCBI chr 3:187,796,140...187,804,327
Ensembl chr 3:167,418,565...167,426,751
JBrowse link
G Mesp1 mesoderm posterior bHLH transcription factor 1 involved_in ISO (PMID:18297060), (PMID:18593560) RGD PMID:18297060 PMID:18593560 NCBI chr 1:143,147,671...143,149,189
Ensembl chr 1:133,738,357...133,739,875
JBrowse link
G Pou5f1 POU class 5 homeobox 1 involved_in ISO (PMID:19736317) RGD PMID:19736317 NCBI chr20:3,227,836...3,232,598
Ensembl chr20:3,223,129...3,227,891
JBrowse link
G Robo1 roundabout guidance receptor 1 involved_in ISO (PMID:25691540) RGD PMID:25691540 NCBI chr11:24,067,869...25,108,694
Ensembl chr11:10,580,908...11,620,203
JBrowse link
G Robo2 roundabout guidance receptor 2 involved_in ISO (PMID:25691540) RGD PMID:25691540 NCBI chr11:26,015,919...27,583,750
Ensembl chr11:12,528,951...13,041,536
JBrowse link
lung induction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnb1 catenin beta 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2148567|MGI:2148569 (PMID:19686689), (PMID:19805295)
Ensembl
RGD
PMID:19686689 PMID:19805295 GO_REF:0000107 NCBI chr 8:129,517,576...129,544,661
Ensembl chr 8:120,639,995...120,667,111
JBrowse link
G Wnt2 Wnt family member 2 acts_upstream_of_or_within ISO MGI:1261834 (PMID:19686689) RGD PMID:19686689 NCBI chr 4:47,294,300...47,340,284
Ensembl chr 4:46,333,998...46,374,402
JBrowse link
G Wnt2b Wnt family member 2B acts_upstream_of_or_within ISO MGI:98954 (PMID:19686689) RGD PMID:19686689 NCBI chr 2:192,454,226...192,468,599
Ensembl chr 2:192,453,824...192,470,308
JBrowse link
mammary gland specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within ISO MGI:95729 (PMID:16720875) RGD PMID:16720875 NCBI chr 2:52,533,939...52,610,980
Ensembl chr 2:50,800,992...50,876,866
JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO MGI:1099809 (PMID:16720875) RGD PMID:16720875 NCBI chr17:54,134,064...54,405,198
Ensembl chr17:49,438,567...49,709,712
JBrowse link
G Pax3 paired box 3 acts_upstream_of_or_within ISO MGI:2687297 (PMID:16720875) RGD PMID:16720875 NCBI chr 9:87,015,960...87,112,531
Ensembl chr 9:79,568,634...79,664,042
JBrowse link
negative regulation of prostatic bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857137 (PMID:11401393), (PMID:18393306)
Ensembl
RGD
PMID:11401393 PMID:18393306 GO_REF:0000107 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:19,618,542...19,623,306
JBrowse link
G Bmp7 bone morphogenetic protein 7 acts_upstream_of_or_within ISO (PMID:16324690) RGD PMID:16324690 NCBI chr 3:182,059,318...182,135,273
Ensembl chr 3:161,516,462...161,716,788
JBrowse link
G Sulf1 sulfatase 1 involved_in IEA
ISO
ISS
GO_REF:0000107
(PMID:20410206)
GO_REF:0000024
Ensembl
RGD
UniProt
PMID:20410206 GO_REF:0000024 GO_REF:0000107 NCBI chr 5:11,145,950...11,308,622
Ensembl chr 5:6,362,911...6,525,584
JBrowse link
G Wnt5a Wnt family member 5A involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857617 (PMID:18804104)
Ensembl
RGD
PMID:18804104 GO_REF:0000107 NCBI chr16:3,702,300...3,724,860
Ensembl chr16:3,697,032...3,718,234
JBrowse link
neural crest cell migration involved in heart formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Folr1 folate receptor alpha involved_in ISO (PMID:17286298) RGD PMID:17286298 NCBI chr 1:165,631,462...165,650,430
Ensembl chr 1:156,219,460...156,230,667
JBrowse link
Notch signaling pathway involved in regulation of secondary heart field cardioblast proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Notch1 notch receptor 1 acts_upstream_of_or_within ISO (PMID:19620969) RGD PMID:19620969 NCBI chr 3:29,676,040...29,721,613
Ensembl chr 3:9,278,086...9,323,531
JBrowse link
organ induction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO MGI:1857137 (PMID:9806931) RGD PMID:9806931 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:19,618,542...19,623,306
JBrowse link
G Fgf1 fibroblast growth factor 1 acts_upstream_of_or_within ISO (PMID:15576401) RGD PMID:15576401 NCBI chr18:30,937,670...31,023,786
Ensembl chr18:30,686,581...30,772,357
JBrowse link
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within IDA
ISO
PMID:10964474
MGI:95517 (PMID:12810586)
RGD PMID:12810586 PMID:10964474 RGD:8554722 NCBI chr 2:52,533,939...52,610,980
Ensembl chr 2:50,800,992...50,876,866
JBrowse link
G Fgf2 fibroblast growth factor 2 acts_upstream_of_or_within ISO (PMID:15576401) RGD PMID:15576401 NCBI chr 2:122,164,454...122,218,796
Ensembl chr 2:120,236,328...120,291,221
JBrowse link
G Fgf3 fibroblast growth factor 3 acts_upstream_of_or_within ISO MGI:1099809|MGI:99604 (PMID:12810586), (PMID:15741321) RGD PMID:12810586 PMID:15741321 NCBI chr 1:209,430,457...209,434,832
Ensembl chr 1:200,001,261...200,005,187
JBrowse link
G Fgf8 fibroblast growth factor 8 acts_upstream_of_or_within ISO MGI:95517 (PMID:15741321) RGD PMID:15741321 NCBI chr 1:254,533,504...254,539,605
Ensembl chr 1:244,584,652...244,590,359
JBrowse link
G Fgfr1 Fibroblast growth factor receptor 1 acts_upstream_of_or_within ISO (PMID:15576401) RGD PMID:15576401 NCBI chr16:73,194,631...73,249,855
Ensembl chr16:66,494,042...66,547,350
JBrowse link
G Fgfr4 fibroblast growth factor receptor 4 acts_upstream_of_or_within ISO (PMID:15576401) RGD PMID:15576401 NCBI chr17:9,466,686...9,481,423
Ensembl chr17:9,461,547...9,476,242
JBrowse link
G Frs2 fibroblast growth factor receptor substrate 2 acts_upstream_of_or_within ISO MGI:3521833 (PMID:15569927) RGD PMID:15569927 NCBI chr 7:54,597,182...54,678,656
Ensembl chr 7:52,711,257...52,792,743
JBrowse link
G Gdnf glial cell derived neurotrophic factor involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1345139 (PMID:15691764)
Ensembl
RGD
PMID:15691764 GO_REF:0000107 NCBI chr 2:58,621,327...58,647,242
Ensembl chr 2:56,895,010...56,917,209
JBrowse link
G Hoxa11 homeobox A11 acts_upstream_of_or_within ISO MGI:96193|MGI:96203 (PMID:12050119) RGD PMID:12050119 NCBI chr 4:82,673,139...82,676,801
Ensembl chr 4:81,342,528...81,346,232
JBrowse link
G Hoxc11 homeobox C11 acts_upstream_of_or_within ISO MGI:96172|MGI:96203 (PMID:12050119) RGD PMID:12050119 NCBI chr 7:135,969,707...135,973,222
Ensembl chr 7:134,091,552...134,094,738
JBrowse link
G Hoxd11 homeobox D11 acts_upstream_of_or_within ISO MGI:96172|MGI:96193 (PMID:12050119) RGD PMID:12050119 NCBI chr 3:79,992,394...79,994,688
Ensembl chr 3:59,585,039...59,586,783
JBrowse link
G Six1 SIX homeobox 1 acts_upstream_of_or_within ISO MGI:2655195 (PMID:12783782) RGD PMID:12783782 NCBI chr 6:97,482,617...97,487,853
Ensembl chr 6:91,746,739...91,751,975
JBrowse link
G Spry1 sprouty RTK signaling antagonist 1 acts_upstream_of_or_within ISO MGI:3574404 (PMID:15691764) RGD PMID:15691764 NCBI chr 2:122,484,995...122,490,008
Ensembl chr 2:120,556,706...120,566,189
JBrowse link
positive regulation of cardioblast proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pim1 Pim-1 proto-oncogene, serine/threonine kinase involved_in ISO (PMID:21474815) RGD PMID:21474815 NCBI chr20:7,556,496...7,560,747
Ensembl chr20:7,554,921...7,559,174
JBrowse link
positive regulation of secondary heart field cardioblast proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eya1 EYA transcriptional coactivator and phosphatase 1 acts_upstream_of_or_within ISO MGI:102780 (PMID:21364285) RGD PMID:21364285 NCBI chr 5:9,646,599...9,884,609
Ensembl chr 5:4,955,543...5,101,483
JBrowse link
G Gng5 G protein subunit gamma 5 acts_upstream_of_or_within ISO (PMID:24599258) RGD PMID:24599258 NCBI chr 2:238,054,954...238,063,451
Ensembl chr 1:77,292,043...77,292,513
Ensembl chr11:77,292,043...77,292,513
JBrowse link
G Six1 SIX homeobox 1 acts_upstream_of_or_within ISO MGI:109344 (PMID:21364285) RGD PMID:21364285 NCBI chr 6:97,482,617...97,487,853
Ensembl chr 6:91,746,739...91,751,975
JBrowse link
G Tbx1 T-box transcription factor 1 acts_upstream_of_or_within ISO (PMID:19745164) RGD PMID:19745164 NCBI chr11:95,913,610...95,923,392
Ensembl chr11:82,409,275...82,418,380
JBrowse link
G Tbx5 T-box transcription factor 5 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2387851 (PMID:22898775)
Ensembl
RGD
PMID:22898775 GO_REF:0000107 NCBI chr12:42,342,926...42,399,723
Ensembl chr12:36,688,014...36,734,885
JBrowse link
primary heart field specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mef2c myocyte enhancer factor 2C involved_in ISS
ISO
GO_REF:0000024
(PMID:16680724)
UniProt
RGD
PMID:16680724 GO_REF:0000024 NCBI chr 2:15,708,732...15,871,639
Ensembl chr 2:13,993,438...14,132,880
JBrowse link
G Wnt11 Wnt family member 11 involved_in ISO UniProtKB:P22725 (PMID:22569553) RGD PMID:22569553 NCBI chr 1:162,545,660...162,565,456
Ensembl chr 1:153,138,197...153,154,294
JBrowse link
G Wnt5a Wnt family member 5A involved_in IEA
ISO
GO_REF:0000107
UniProtKB:P48615 (PMID:22569553)
Ensembl
RGD
PMID:22569553 GO_REF:0000107 NCBI chr16:3,702,300...3,724,860
Ensembl chr16:3,697,032...3,718,234
JBrowse link
primary lung bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hhex hematopoietically expressed homeobox acts_upstream_of_or_within ISO MGI:2177762 (PMID:16364283) RGD PMID:16364283 NCBI chr 1:244,602,945...244,608,532
Ensembl chr 1:235,190,455...235,196,042
JBrowse link
G Rdh10 retinol dehydrogenase 10 acts_upstream_of_or_within ISO (PMID:17473173) RGD PMID:17473173 NCBI chr 5:7,969,931...7,998,834
Ensembl chr 5:3,188,445...3,215,572
JBrowse link
pronephric field specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pax2 paired box 2 involved_in ISS
ISO
GO_REF:0000024
(PMID:12435636)
UniProt
RGD
PMID:12435636 GO_REF:0000024 NCBI chr 1:253,555,447...253,646,623
Ensembl chr 1:243,616,606...243,695,321
JBrowse link
G Pax8 paired box 8 involved_in ISS
ISO
GO_REF:0000024
(PMID:12435636)
UniProt
RGD
PMID:12435636 GO_REF:0000024 NCBI chr 3:27,584,000...27,641,094
Ensembl chr 3:7,185,723...7,242,363
JBrowse link
prostate induction term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ar androgen receptor acts_upstream_of_or_within
involved_in
ISO
IEA
MGI:3716756 (PMID:17317769)
GO_REF:0000107
RGD
Ensembl
PMID:17317769 GO_REF:0000107 NCBI chr  X:67,135,317...67,304,476
Ensembl chr  X:63,104,771...63,273,925
JBrowse link
prostatic bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 involved_in
acts_upstream_of
IEA
ISO
GO_REF:0000107
MGI:1857137 (PMID:11401393)
Ensembl
RGD
PMID:11401393 GO_REF:0000107 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:19,618,542...19,623,306
JBrowse link
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within ISO MGI:88064 (PMID:12941620) RGD PMID:12941620 NCBI chr 2:52,533,939...52,610,980
Ensembl chr 2:50,800,992...50,876,866
JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO MGI:1857509 (PMID:16707121) RGD PMID:16707121 NCBI chr13:32,499,678...32,716,418
Ensembl chr13:29,946,809...30,163,574
JBrowse link
G Nog noggin involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1862000 (PMID:18028901)
Ensembl
RGD
PMID:18028901 GO_REF:0000107 NCBI chr10:74,625,874...74,627,501
Ensembl chr10:74,128,712...74,130,339
JBrowse link
G Shh sonic hedgehog signaling molecule NOT|acts_upstream_of_or_within ISO MGI:88064 (PMID:15013801) RGD PMID:15013801 NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:6,954,017...6,963,170
JBrowse link
G Tp63 tumor protein p63 acts_upstream_of_or_within ISO MGI:1934269 (PMID:11106548) RGD PMID:11106548 NCBI chr11:88,343,647...88,554,543
Ensembl chr11:74,838,859...75,049,398
JBrowse link
regulation of animal organ formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 involved_in ISO (PMID:17537799) RGD PMID:17537799 NCBI chr 1:14,132,303...14,134,746
Ensembl chr 1:12,312,160...12,314,897
JBrowse link
G Wt1 WT1 transcription factor involved_in ISS
ISO
GO_REF:0000024
(PMID:17537799)
UniProt
RGD
PMID:17537799 GO_REF:0000024 NCBI chr 3:112,019,721...112,068,454
Ensembl chr 3:91,567,001...91,613,643
JBrowse link
regulation of cardioblast proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Notch1 notch receptor 1 IMP RGD PMID:18824567 RGD:2325311 NCBI chr 3:29,676,040...29,721,613
Ensembl chr 3:9,278,086...9,323,531
JBrowse link
regulation of prostatic bud formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ar androgen receptor acts_upstream_of_or_within ISO MGI:1099809 (PMID:12941620) RGD PMID:12941620 NCBI chr  X:67,135,317...67,304,476
Ensembl chr  X:63,104,771...63,273,925
JBrowse link
G Shh sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:12221011), (PMID:18393306)
Ensembl
RGD
PMID:12221011 PMID:18393306 GO_REF:0000107 NCBI chr 4:7,687,872...7,697,025
Ensembl chr 4:6,954,017...6,963,170
JBrowse link
regulation of secondary heart field cardioblast proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnb1 catenin beta 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:19620969)
Ensembl
RGD
PMID:19620969 GO_REF:0000107 NCBI chr 8:129,517,576...129,544,661
Ensembl chr 8:120,639,995...120,667,111
JBrowse link
G Hand2 heart and neural crest derivatives expressed 2 involved_in IEA
ISO
GO_REF:0000107
(PMID:19008477)
Ensembl
RGD
PMID:19008477 GO_REF:0000107 NCBI chr16:37,928,145...37,931,488
Ensembl chr16:32,917,823...32,919,891
JBrowse link
G Hes1 hes family bHLH transcription factor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(PMID:19609448)
Ensembl
RGD
PMID:19609448 GO_REF:0000107 NCBI chr11:84,210,632...84,213,045
Ensembl chr11:70,705,764...70,708,192
JBrowse link
G Isl1 ISL LIM homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2447758 (PMID:19620969)
Ensembl
RGD
PMID:19620969 GO_REF:0000107 NCBI chr 2:49,813,618...49,823,442
Ensembl chr 2:48,080,522...48,095,584
JBrowse link
secondary heart field specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Axin2 axin 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:96522 (PMID:22711842)
Ensembl
RGD
PMID:22711842 GO_REF:0000107 NCBI chr10:93,893,830...93,927,042
Ensembl chr10:93,899,245...93,926,231
JBrowse link
G Bmp4 bone morphogenetic protein 4 involved_in IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:20702560)
Ensembl
UniProt
RGD
PMID:20702560 GO_REF:0000024 GO_REF:0000107 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:19,618,542...19,623,306
JBrowse link
G Foxh1 forkhead box H1 involved_in ISO (PMID:15363409) RGD PMID:15363409 NCBI chr 7:110,268,608...110,272,105
Ensembl chr 7:108,387,969...108,390,049
JBrowse link
G Isl1 ISL LIM homeobox 1 involved_in ISO
IEA
(PMID:20520780)
GO_REF:0000107
RGD
Ensembl
PMID:20520780 GO_REF:0000107 NCBI chr 2:49,813,618...49,823,442
Ensembl chr 2:48,080,522...48,095,584
JBrowse link
G Lrp2 LDL receptor related protein 2 involved_in ISS
ISO
IEA
GO_REF:0000024
(PMID:26822476)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:26822476 GO_REF:0000024 GO_REF:0000107 NCBI chr 3:74,597,148...74,754,535
Ensembl chr 3:54,189,308...54,346,708
JBrowse link
G Mef2c myocyte enhancer factor 2C involved_in ISS
ISO
GO_REF:0000024
(PMID:15890826)
UniProt
RGD
PMID:15890826 GO_REF:0000024 NCBI chr 2:15,708,732...15,871,639
Ensembl chr 2:13,993,438...14,132,880
JBrowse link
G Mesp1 mesoderm posterior bHLH transcription factor 1 involved_in ISO (PMID:18593560) RGD PMID:18593560 NCBI chr 1:143,147,671...143,149,189
Ensembl chr 1:133,738,357...133,739,875
JBrowse link
G Rbpj recombination signal binding protein for immunoglobulin kappa J region acts_upstream_of_or_within ISO MGI:1270862|MGI:3583755 (PMID:22711842) RGD PMID:22711842 NCBI chr14:61,551,366...61,736,220
Ensembl chr14:57,338,507...57,523,353
JBrowse link
G Smarcd3 SWI/SNF related BAF chromatin remodeling complex subunit D3 acts_upstream_of_or_within ISO MGI:2148567 (PMID:17519332) RGD PMID:17519332 NCBI chr 4:10,548,693...10,580,334
Ensembl chr 4:10,548,751...10,580,326
JBrowse link
G Wnt11 Wnt family member 11 involved_in ISO UniProtKB:P22725 (PMID:22569553) RGD PMID:22569553 NCBI chr 1:162,545,660...162,565,456
Ensembl chr 1:153,138,197...153,154,294
JBrowse link
G Wnt5a Wnt family member 5A involved_in IEA
ISO
GO_REF:0000107
UniProtKB:P48615 (PMID:22569553)
Ensembl
RGD
PMID:22569553 GO_REF:0000107 NCBI chr16:3,702,300...3,724,860
Ensembl chr16:3,697,032...3,718,234
JBrowse link
sensory organ boundary specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ntf4 neurotrophin 4 involved_in
acts_upstream_of_or_within
ISS
ISO
PMID:10479455
MGI:1933845 (PMID:10479455)
RGD PMID:10479455 PMID:10479455 RGD:8554019 NCBI chr 1:105,030,035...105,032,866
Ensembl chr 1:95,893,457...95,897,243
JBrowse link
smoothened signaling pathway involved in regulation of secondary heart field cardioblast proliferation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mks1 MKS transition zone complex subunit 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:4821832 (PMID:27340223)
Ensembl
RGD
PMID:27340223 GO_REF:0000107 NCBI chr10:72,655,921...72,667,007
Ensembl chr10:72,655,921...72,666,655
JBrowse link
specification of animal organ identity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tbr1 T-box brain transcription factor 1 acts_upstream_of_or_within ISO MGI:2179766 (PMID:20615956) RGD PMID:20615956 NCBI chr 3:66,758,805...66,769,626
Ensembl chr 3:46,351,213...46,361,041
JBrowse link
trachea formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:3797048 (PMID:18692041)
Ensembl
RGD
PMID:18692041 GO_REF:0000107 NCBI chr15:22,098,191...22,113,145
Ensembl chr15:19,618,542...19,623,306
JBrowse link
G Ctnnb1 catenin beta 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2148569 (PMID:19805295)
Ensembl
RGD
PMID:19805295 GO_REF:0000107 NCBI chr 8:129,517,576...129,544,661
Ensembl chr 8:120,639,995...120,667,111
JBrowse link
G Map2k1 mitogen activated protein kinase kinase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1346867 (PMID:25100655)
Ensembl
RGD
PMID:25100655 GO_REF:0000107 NCBI chr 8:73,578,747...73,650,184
Ensembl chr 8:64,683,449...64,755,147
JBrowse link
G Map2k2 mitogen activated protein kinase kinase 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1346866 (PMID:25100655)
Ensembl
RGD
PMID:25100655 GO_REF:0000107 NCBI chr 7:9,241,449...9,264,216
Ensembl chr 7:8,580,905...8,610,243
JBrowse link
G Mapk1 mitogen activated protein kinase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1346859 (PMID:25100655)
Ensembl
RGD
PMID:25100655 GO_REF:0000107 NCBI chr11:97,462,025...97,529,193
Ensembl chr11:83,957,813...84,023,616
JBrowse link
G Mapk3 mitogen activated protein kinase 3 acts_upstream_of_or_within ISO MGI:1346858 (PMID:25100655) RGD PMID:25100655 NCBI chr 1:190,797,189...190,803,411
Ensembl chr 1:181,366,637...181,372,863
JBrowse link
G Tgfbr2 transforming growth factor, beta receptor 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2384513 (PMID:18990706)
Ensembl
RGD
PMID:18990706 GO_REF:0000107 NCBI chr 8:124,672,677...124,761,741
Ensembl chr 8:115,794,537...115,883,228
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20536
    developmental process 7109
      anatomical structure formation involved in morphogenesis 1379
        animal organ formation 77
          formation of animal organ boundary + 1
          heart formation + 35
          pancreatic bud formation + 0
          primary lung bud formation + 5
          pronephros formation + 0
          prostatic bud formation + 10
          regulation of animal organ formation + 32
          specification of animal organ identity + 42
          swim bladder formation 0
          trachea formation 7
Path 2
Term Annotations click to browse term
  biological_process 20536
    developmental process 7109
      anatomical structure development 6611
        animal organ development 3686
          animal organ morphogenesis 1170
            animal organ formation 77
              formation of animal organ boundary + 1
              heart formation + 35
              pancreatic bud formation + 0
              primary lung bud formation + 5
              pronephros formation + 0
              prostatic bud formation + 10
              regulation of animal organ formation + 32
              specification of animal organ identity + 42
              swim bladder formation 0
              trachea formation 7
paths to the root