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ONTOLOGY REPORT - ANNOTATIONS


Term:camera-type eye morphogenesis
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Accession:GO:0048593 term browser browse the term
Definition:The process in which the anatomical structures of the eye are generated and organized. The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field.
Synonyms:exact_synonym: camera-style eye morphogenesis
 alt_id: GO:0048594;   GO:0048595



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camera-type eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AQP1 aquaporin 1 (Colton blood group) acts_upstream_of_or_within ISO (MGI:2180433|PMID:11891232) MGI PMID:11891232 MGI:2180433 NCBI chr14:43,592,266...43,603,903
Ensembl chr14:43,578,721...43,605,720
JBrowse link
G AQP5 aquaporin 5 acts_upstream_of_or_within ISO (MGI:2180433|PMID:11891232) MGI PMID:11891232 MGI:2180433 NCBI chr27:4,735,313...4,742,975
Ensembl chr27:4,735,538...4,737,650
JBrowse link
G BMP4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO (MGI:1095762|PMID:9268572) MGI PMID:9268572 MGI:1095762 NCBI chr 8:29,997,563...30,254,307
Ensembl chr 8:29,997,569...30,004,557
JBrowse link
G BMP7 bone morphogenetic protein 7 acts_upstream_of_or_within ISO (MGI:3701027|PMID:16854970)
(MGI:3610441|PMID:16154126)
MGI PMID:16154126 PMID:16854970 MGI:3610441 MGI:3701027 NCBI chr24:42,203,183...42,294,105
Ensembl chr24:42,204,823...42,294,653
JBrowse link
G C27H12orf57 chromosome 27 C12orf57 homolog involved_in IEA Ensembl GO_REF:0000107 NCBI chr27:38,101,705...38,103,553
Ensembl chr27:38,101,786...38,127,910
Ensembl chr27:38,101,786...38,127,910
JBrowse link
G CMSS1 cms1 ribosomal small subunit homolog involved_in IEA Ensembl GO_REF:0000107 NCBI chr33:6,442,721...6,818,394
Ensembl chr33:6,443,035...6,818,171
JBrowse link
G COL8A1 collagen type VIII alpha 1 chain acts_upstream_of_or_within ISO (MGI:3587134|PMID:16051690) MGI PMID:16051690 MGI:3587134 NCBI chr33:6,285,742...6,428,172
Ensembl chr33:6,285,415...6,425,414
JBrowse link
G COL8A2 collagen type VIII alpha 2 chain acts_upstream_of_or_within ISO (MGI:3587134|PMID:16051690) MGI PMID:16051690 MGI:3587134 NCBI chr15:6,095,872...6,115,538
Ensembl chr15:6,095,728...6,115,538
JBrowse link
G EPHB1 EPH receptor B1 acts_upstream_of_or_within ISO (MGI:2675767|PMID:12971893) MGI PMID:12971893 MGI:2675767 NCBI chr23:31,485,701...31,918,754
Ensembl chr23:31,485,534...31,917,393
JBrowse link
G EPHB2 EPH receptor B2 acts_upstream_of_or_within ISO (MGI:2675767|PMID:12971893) MGI PMID:12971893 MGI:2675767 NCBI chr 2:76,427,112...76,551,494
Ensembl chr 2:76,428,203...76,612,786
JBrowse link
G FAT1 FAT atypical cadherin 1 involved_in ISO (MGI:5766588|PMID:26114487) MGI PMID:26114487 MGI:5766588 NCBI chr16:44,113,621...44,241,187
Ensembl chr16:44,128,386...44,241,192
JBrowse link
G GDF11 growth differentiation factor 11 acts_upstream_of_or_within ISO (MGI:3581514|PMID:15976303) MGI PMID:15976303 MGI:3581514 NCBI chr10:142,039...152,537
Ensembl chr10:145,036...148,373
JBrowse link
G GLI3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (MGI:52587|PMID:8387379) MGI PMID:8387379 MGI:52587 NCBI chr18:7,800,817...8,071,531
Ensembl chr18:7,801,394...8,068,132
JBrowse link
G HIF1A hypoxia inducible factor 1 subunit alpha acts_upstream_of_or_within ISO (MGI:5429122|PMID:22627278) MGI PMID:22627278 MGI:5429122 NCBI chr 8:36,614,045...36,656,692
Ensembl chr 8:36,614,045...36,656,692
JBrowse link
G IFT122 intraflagellar transport 122 involved_in ISO (MGI:3827087|PMID:19000668) UniProt PMID:19000668 MGI:3827087 NCBI chr20:5,644,002...5,716,702
Ensembl chr20:5,644,089...5,715,906
JBrowse link
G MFN2 mitofusin 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3589043|PMID:16104381) Ensembl
MGI
PMID:16104381 GO_REF:0000107 MGI:3589043 NCBI chr 2:84,284,719...84,310,715
Ensembl chr 2:84,284,719...84,308,225
JBrowse link
G NECTIN1 nectin cell adhesion molecule 1 acts_upstream_of_or_within ISO (MGI:3604842|PMID:15728677) MGI PMID:15728677 MGI:3604842 NCBI chr 5:14,228,197...14,292,825
Ensembl chr 5:14,228,197...14,315,060
JBrowse link
G NF1 neurofibromin 1 acts_upstream_of_or_within ISO (MGI:66069|PMID:7926784) MGI PMID:7926784 MGI:66069 NCBI chr 9:41,467,460...41,679,388
Ensembl chr 9:41,469,416...41,679,382
JBrowse link
G RING1 ring finger protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3628673|PMID:16624538) Ensembl
MGI
PMID:16624538 GO_REF:0000107 MGI:3628673 NCBI chr12:2,671,578...2,675,488
Ensembl chr12:2,671,578...2,675,488
JBrowse link
G SKI SKI proto-oncogene acts_upstream_of_or_within ISO (MGI:3693412|PMID:17003410) MGI PMID:17003410 MGI:3693412 NCBI chr 5:57,144,178...57,216,385
Ensembl chr 5:57,145,825...57,214,403
JBrowse link
G TENM3 teneurin transmembrane protein 3 involved_in ISO (PMID:22766609) UniProt PMID:22766609 NCBI chr16:47,440,673...47,883,311
Ensembl chr16:47,441,348...48,044,322
Ensembl chr16:47,441,348...48,044,322
JBrowse link
G VEGFA vascular endothelial growth factor A acts_upstream_of_or_within ISO (MGI:3607459|PMID:16251428) MGI PMID:16251428 MGI:3607459 NCBI chr12:12,209,032...12,224,978
Ensembl chr12:12,208,231...12,224,965
JBrowse link
G VHL von Hippel-Lindau tumor suppressor acts_upstream_of_or_within ISO (MGI:5429122|PMID:22627278) MGI PMID:22627278 MGI:5429122 NCBI chr20:8,206,616...8,211,347
Ensembl chr20:8,206,616...8,211,323
JBrowse link
G YY1 YY1 transcription factor involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3628673|PMID:16624538) Ensembl
MGI
PMID:16624538 GO_REF:0000107 MGI:3628673 NCBI chr 8:68,539,511...68,572,796
Ensembl chr 8:68,539,353...68,568,058
JBrowse link
camera-type eye photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PROM1 prominin 1 involved_in ISO (MGI:3838023|PMID:19228982)
(PMID:18654668)
UniProt
BHF-UCL
PMID:18654668 PMID:19228982 MGI:3838023 NCBI chr 3:64,229,487...64,362,346
Ensembl chr 3:64,260,685...64,382,009
JBrowse link
G ROM1 retinal outer segment membrane protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4437581|PMID:20300562) Ensembl
MGI
PMID:20300562 GO_REF:0000107 MGI:4437581 NCBI chr18:54,025,603...54,027,803
Ensembl chr18:54,025,606...54,027,375
JBrowse link
G SDK2 sidekick cell adhesion molecule 2 involved_in ISO (MGI:5693671|PMID:26287463) UniProt PMID:26287463 MGI:5693671 NCBI chr 9:6,788,305...6,868,052
Ensembl chr 9:6,734,504...6,867,078
JBrowse link
G SLC4A7 solute carrier family 4 member 7 acts_upstream_of_or_within ISO (MGI:2680888|PMID:12808454) MGI PMID:12808454 MGI:2680888 NCBI chr23:16,710,649...16,788,277
Ensembl chr23:16,710,701...16,785,541
JBrowse link
G TTC8 tetratricopeptide repeat domain 8 acts_upstream_of_or_within ISO (MGI:5014119|PMID:21646512) MGI PMID:21646512 MGI:5014119 NCBI chr 8:60,061,670...60,115,464
Ensembl chr 8:60,061,732...60,115,075
JBrowse link
camera-type eye photoreceptor cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IHH Indian hedgehog signaling molecule acts_upstream_of_or_within ISO (MGI:3807419|PMID:18582859) MGI PMID:18582859 MGI:3807419 NCBI chr37:25,616,942...25,622,989 JBrowse link
ciliary body morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FOXE3 forkhead box E3 involved_in ISO (MGI:3703484|PMID:17064680) UniProt PMID:17064680 MGI:3703484 NCBI chr15:13,291,160...13,295,982 JBrowse link
G JAG1 jagged canonical Notch ligand 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5492288|PMID:23676271) Ensembl
MGI
PMID:23676271 GO_REF:0000107 MGI:5492288 NCBI chr24:11,656,926...11,693,146
Ensembl chr24:11,657,416...11,692,199
JBrowse link
G NOTCH2 notch receptor 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5492288|PMID:23676271) Ensembl
MGI
PMID:23676271 GO_REF:0000107 MGI:5492288 NCBI chr17:56,854,825...57,020,157
Ensembl chr17:56,860,429...57,020,857
JBrowse link
G TSKU tsukushi, small leucine rich proteoglycan acts_upstream_of_or_within ISO (MGI:5285004|PMID:21856951) MGI PMID:21856951 MGI:5285004 NCBI chr21:21,910,333...21,927,758
Ensembl chr21:21,915,956...21,928,119
JBrowse link
G VHL von Hippel-Lindau tumor suppressor acts_upstream_of_or_within ISO (MGI:5429122|PMID:22627278) MGI PMID:22627278 MGI:5429122 NCBI chr20:8,206,616...8,211,347
Ensembl chr20:8,206,616...8,211,323
JBrowse link
closure of optic fissure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PHACTR4 phosphatase and actin regulator 4 involved_in IEA UniProt GO_REF:0000104 NCBI chr 2:71,982,524...72,079,916
Ensembl chr 2:71,984,730...72,080,194
JBrowse link
G SOX11 SRY-box transcription factor 11 involved_in ISO (MGI:3797299|PMID:18423449) UniProt PMID:18423449 MGI:3797299
embryonic camera-type eye formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G STRA6 signaling receptor and transporter of retinol STRA6 involved_in ISO (PMID:17273977) DFLAT PMID:17273977 NCBI chr30:37,331,834...37,359,449
Ensembl chr30:37,331,832...37,353,529
JBrowse link
G TWIST1 twist family bHLH transcription factor 1 involved_in ISO (PMID:17070479) BHF-UCL PMID:17070479
embryonic camera-type eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP7 bone morphogenetic protein 7 acts_upstream_of_or_within ISO (MGI:1332362|PMID:10049573) MGI PMID:10049573 MGI:1332362 NCBI chr24:42,203,183...42,294,105
Ensembl chr24:42,204,823...42,294,653
JBrowse link
G CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3807101|PMID:18653562) Ensembl
MGI
PMID:18653562 GO_REF:0000107 MGI:3807101 NCBI chr 1:31,522,911...31,525,342
Ensembl chr 1:31,523,799...31,524,995
JBrowse link
G CRYAA crystallin alpha A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3775669|PMID:18056999) Ensembl
MGI
PMID:18056999 GO_REF:0000107 MGI:3775669 NCBI chr31:37,307,070...37,310,262
Ensembl chr31:37,307,093...37,310,247
JBrowse link
G FOXF2 forkhead box F2 involved_in ISO (MGI:5297296|PMID:22022403) BHF-UCL PMID:22022403 MGI:5297296 NCBI chr35:1,841,165...1,846,649
Ensembl chr35:1,841,123...1,846,663
JBrowse link
G FZD5 frizzled class receptor 5 involved_in ISO (MGI:3826935|PMID:18832390) CACAO PMID:18832390 MGI:3826935 NCBI chr37:16,123,788...16,126,634
Ensembl chr37:16,123,798...16,125,567
JBrowse link
G HIPK1 homeodomain interacting protein kinase 1 involved_in ISO (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chr17:51,732,079...51,783,534
Ensembl chr17:51,732,016...51,781,063
JBrowse link
G HIPK2 homeodomain interacting protein kinase 2 involved_in ISO (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chr16:9,066,957...9,256,916
Ensembl chr16:9,066,970...9,244,526
JBrowse link
G IFT122 intraflagellar transport 122 acts_upstream_of_or_within ISO (MGI:6094959|PMID:28778798) MGI PMID:28778798 MGI:6094959 NCBI chr20:5,644,002...5,716,702
Ensembl chr20:5,644,089...5,715,906
JBrowse link
G IFT172 intraflagellar transport 172 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:6094959|PMID:28778798) Ensembl
MGI
PMID:28778798 GO_REF:0000107 MGI:6094959 NCBI chr17:21,389,462...21,426,970
Ensembl chr17:21,389,482...21,426,796
JBrowse link
G IHH Indian hedgehog signaling molecule acts_upstream_of_or_within ISO (MGI:3807419|PMID:18582859) MGI PMID:18582859 MGI:3807419 NCBI chr37:25,616,942...25,622,989 JBrowse link
G KDM2B lysine demethylase 2B involved_in ISO (MGI:4949568|PMID:21220025) BHF-UCL PMID:21220025 MGI:4949568 NCBI chr26:7,625,857...7,746,049
Ensembl chr26:7,598,931...7,745,113
JBrowse link
G LRP6 LDL receptor related protein 6 involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:4413396|PMID:19653321)
(MGI:3823171|PMID:18985738)
GO_Central
MGI
PMID:18985738 PMID:19653321 PMID:21873635 MGI:3823171 MGI:4413396 NCBI chr27:34,003,334...34,166,334
Ensembl chr27:34,003,539...34,161,437
JBrowse link
G PAX6 paired box 6 acts_upstream_of_or_within ISO (MGI:3807101|PMID:18653562) MGI PMID:18653562 MGI:3807101
G SP1 Sp1 transcription factor acts_upstream_of_or_within ISO (MGI:3717030|PMID:17584888) MGI PMID:17584888 MGI:3717030 NCBI chr27:1,802,587...1,861,187
Ensembl chr27:1,805,184...1,847,226
JBrowse link
G SP3 Sp3 transcription factor acts_upstream_of_or_within ISO (MGI:3717030|PMID:17584888) MGI PMID:17584888 MGI:3717030 NCBI chr36:18,023,750...18,086,995
Ensembl chr36:18,024,627...18,077,587
JBrowse link
G TBX2 T-box transcription factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:35,237,323...35,245,066
Ensembl chr 9:35,235,649...35,245,736
JBrowse link
G TFAP2A transcription factor AP-2 alpha acts_upstream_of_or_within ISO (MGI:1313057|PMID:9811866) MGI PMID:9811866 MGI:1313057 NCBI chr35:10,157,043...10,180,484
Ensembl chr35:10,157,882...10,180,270
JBrowse link
G TH tyrosine hydroxylase involved_in ISO (MGI:3617102|PMID:16445854) BHF-UCL PMID:16445854 MGI:3617102 NCBI chr18:46,327,136...46,334,973
Ensembl chr18:46,327,137...46,335,602
JBrowse link
G ZEB1 zinc finger E-box binding homeobox 1 acts_upstream_of_or_within ISO (MGI:3790562|PMID:18436818) MGI PMID:18436818 MGI:3790562 NCBI chr 2:15,300,401...15,481,535
Ensembl chr 2:15,299,723...15,481,495
JBrowse link
embryonic retina morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDON cell adhesion associated, oncogene regulated involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4422144|PMID:19754878) Ensembl
MGI
PMID:19754878 GO_REF:0000107 MGI:4422144 NCBI chr 5:8,439,606...8,536,088
Ensembl chr 5:8,446,346...8,533,426
JBrowse link
G HIPK1 homeodomain interacting protein kinase 1 involved_in ISO (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chr17:51,732,079...51,783,534
Ensembl chr17:51,732,016...51,781,063
JBrowse link
G HIPK2 homeodomain interacting protein kinase 2 involved_in ISO (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chr16:9,066,957...9,256,916
Ensembl chr16:9,066,970...9,244,526
JBrowse link
G LHX1 LIM homeobox 1 involved_in ISS UniProt GO_REF:0000024 NCBI chr 9:36,760,890...36,768,345
Ensembl chr 9:36,761,826...36,768,164
JBrowse link
G LRP6 LDL receptor related protein 6 involved_in
acts_upstream_of_or_within
IBA
ISO
(PMID:21873635)
(MGI:4413396|PMID:19653321)
GO_Central
MGI
PMID:19653321 PMID:21873635 MGI:4413396 NCBI chr27:34,003,334...34,166,334
Ensembl chr27:34,003,539...34,161,437
JBrowse link
G PROX1 prospero homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:12692551) Ensembl
BHF-UCL
PMID:12692551 GO_REF:0000107 NCBI chr 7:11,996,282...12,047,693
Ensembl chr 7:11,996,703...12,044,036
JBrowse link
G RBP4 retinol binding protein 4 involved_in ISO (MGI:1344892|PMID:10469643) BHF-UCL PMID:10469643 MGI:1344892 NCBI chr28:7,822,936...7,830,735
Ensembl chr28:7,822,944...7,830,750
JBrowse link
establishment of epithelial cell apical/basal polarity involved in camera-type eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FAT1 FAT atypical cadherin 1 involved_in ISO (MGI:5766588|PMID:26114487) MGI PMID:26114487 MGI:5766588 NCBI chr16:44,113,621...44,241,187
Ensembl chr16:44,128,386...44,241,192
JBrowse link
horizontal cell localization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LHX1 LIM homeobox 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:36,760,890...36,768,345
Ensembl chr 9:36,761,826...36,768,164
JBrowse link
iris morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FOXE3 forkhead box E3 involved_in ISO (MGI:3703484|PMID:17064680) UniProt PMID:17064680 MGI:3703484 NCBI chr15:13,291,160...13,295,982 JBrowse link
G HIF1A hypoxia inducible factor 1 subunit alpha involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5429122|PMID:22627278) Ensembl
MGI
PMID:22627278 GO_REF:0000107 MGI:5429122 NCBI chr 8:36,614,045...36,656,692
Ensembl chr 8:36,614,045...36,656,692
JBrowse link
G HIPK1 homeodomain interacting protein kinase 1 involved_in ISO (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chr17:51,732,079...51,783,534
Ensembl chr17:51,732,016...51,781,063
JBrowse link
G HIPK2 homeodomain interacting protein kinase 2 involved_in ISO (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chr16:9,066,957...9,256,916
Ensembl chr16:9,066,970...9,244,526
JBrowse link
G PAX6 paired box 6 involved_in ISO (PMID:7550230) DFLAT PMID:7550230
G PITX2 paired like homeodomain 2 involved_in ISO (PMID:9437321) BHF-UCL PMID:9437321 NCBI chr32:30,710,161...30,730,162
Ensembl chr32:30,710,685...30,730,273
JBrowse link
G VHL von Hippel-Lindau tumor suppressor acts_upstream_of_or_within ISO (MGI:5429122|PMID:22627278) MGI PMID:22627278 MGI:5429122 NCBI chr20:8,206,616...8,211,347
Ensembl chr20:8,206,616...8,211,323
JBrowse link
lens fiber cell morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABI2 abl interactor 2 involved_in ISO (MGI:3525751|PMID:15572692) UniProt PMID:15572692 MGI:3525751 NCBI chr37:12,162,815...12,278,505
Ensembl chr37:12,162,392...12,282,395
JBrowse link
G ATF4 activating transcription factor 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:25,528,880...25,531,018
Ensembl chr10:25,528,874...25,530,993
JBrowse link
G CRYAA crystallin alpha A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3655912|PMID:16799046)
(MGI:3775669|PMID:18056999)
Ensembl
MGI
PMID:16799046 PMID:18056999 GO_REF:0000107 MGI:3655912 MGI:3775669 NCBI chr31:37,307,070...37,310,262
Ensembl chr31:37,307,093...37,310,247
JBrowse link
G CRYGB crystallin gamma B acts_upstream_of_or_within ISO (MGI:3691890|PMID:12426373), (MGI:81294|PMID:8626090) MGI PMID:8626090 PMID:12426373 MGI:3691890 MGI:81294 NCBI chr37:16,440,804...16,442,823
Ensembl chr37:16,440,805...16,442,912
JBrowse link
G EPHA2 EPH receptor A2 involved_in ISO (MGI:3831440|PMID:18948590) UniProt PMID:18948590 MGI:3831440 NCBI chr 2:81,534,130...81,561,722
Ensembl chr 2:81,534,125...81,561,725
JBrowse link
G PROX1 prospero homeobox 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 7:11,996,282...12,047,693
Ensembl chr 7:11,996,703...12,044,036
JBrowse link
G TBC1D20 TBC1 domain family member 20 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5551670|PMID:24239381) Ensembl
MGI
PMID:24239381 GO_REF:0000107 MGI:5551670 NCBI chr24:20,400,647...20,419,652
Ensembl chr24:20,400,791...20,419,655
JBrowse link
lens induction in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1316914|PMID:9851982) Ensembl
MGI
PMID:9851982 GO_REF:0000107 MGI:1316914 NCBI chr 8:29,997,563...30,254,307
Ensembl chr 8:29,997,569...30,004,557
JBrowse link
G HIPK1 homeodomain interacting protein kinase 1 involved_in ISO (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chr17:51,732,079...51,783,534
Ensembl chr17:51,732,016...51,781,063
JBrowse link
G HIPK2 homeodomain interacting protein kinase 2 involved_in ISO (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chr16:9,066,957...9,256,916
Ensembl chr16:9,066,970...9,244,526
JBrowse link
G POU2F1 POU class 2 homeobox 1 acts_upstream_of_or_within ISO (MGI:3701404|PMID:17140559) MGI PMID:17140559 MGI:3701404 NCBI chr 7:30,975,303...31,162,288
Ensembl chr 7:30,986,181...31,162,246
JBrowse link
G SIX3 SIX homeobox 3 acts_upstream_of_or_within ISO (MGI:3692850|PMID:17066077) MGI PMID:17066077 MGI:3692850 NCBI chr10:47,332,875...47,369,359
Ensembl chr10:47,332,888...47,343,635
JBrowse link
G SOX2 SRY-box transcription factor 2 acts_upstream_of_or_within ISO (MGI:3701404|PMID:17140559) MGI PMID:17140559 MGI:3701404 NCBI chr34:14,853,000...14,855,153 JBrowse link
G TFAP2A transcription factor AP-2 alpha acts_upstream_of_or_within ISO (MGI:1347707|PMID:10571739) MGI PMID:10571739 MGI:1347707 NCBI chr35:10,157,043...10,180,484
Ensembl chr35:10,157,882...10,180,270
JBrowse link
lens morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCAR3 BCAR3 adaptor protein, NSP family member acts_upstream_of_or_within ISO (MGI:4358852|PMID:19365570) MGI PMID:19365570 MGI:4358852 NCBI chr 6:55,276,300...55,525,246
Ensembl chr 6:55,347,955...55,525,246
JBrowse link
G CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3807101|PMID:18653562) Ensembl
MGI
PMID:18653562 GO_REF:0000107 MGI:3807101 NCBI chr 1:31,522,911...31,525,342
Ensembl chr 1:31,523,799...31,524,995
JBrowse link
G CRYAA crystallin alpha A acts_upstream_of_or_within ISO (MGI:3655912|PMID:16799046)
(MGI:82388|PMID:8812430)
MGI PMID:8812430 PMID:16799046 MGI:3655912 MGI:82388 NCBI chr31:37,307,070...37,310,262
Ensembl chr31:37,307,093...37,310,247
JBrowse link
G CTNNB1 catenin beta 1 acts_upstream_of_or_within ISO (MGI:3603687|PMID:16102745) MGI PMID:16102745 MGI:3603687 NCBI chr23:10,559,722...10,572,933
Ensembl chr23:10,559,718...10,572,927
JBrowse link
G FGFR3 fibroblast growth factor receptor 3 acts_upstream_of_or_within ISO (MGI:1933072|PMID:11290300) MGI PMID:11290300 MGI:1933072 NCBI chr 3:62,309,128...62,318,932
Ensembl chr 3:62,303,756...62,323,896
JBrowse link
G LCTL lactase like involved_in ISO (MGI:6274960|PMID:29425878) UniProt PMID:29425878 MGI:6274960 NCBI chr30:30,808,356...30,827,504
Ensembl chr30:30,808,359...30,822,419
JBrowse link
G MEIS1 Meis homeobox 1 acts_upstream_of_or_within ISO (MGI:3028436|PMID:14713950) MGI PMID:14713950 MGI:3028436 NCBI chr10:65,765,498...65,898,714
Ensembl chr10:65,683,560...65,897,573
JBrowse link
G NECTIN1 nectin cell adhesion molecule 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3604842|PMID:15728677) Ensembl
MGI
PMID:15728677 GO_REF:0000107 MGI:3604842 NCBI chr 5:14,228,197...14,292,825
Ensembl chr 5:14,228,197...14,315,060
JBrowse link
G NECTIN3 nectin cell adhesion molecule 3 acts_upstream_of_or_within ISO (MGI:3604842|PMID:15728677) MGI PMID:15728677 MGI:3604842 NCBI chr33:15,868,813...16,173,158
Ensembl chr33:15,911,411...15,933,307
JBrowse link
G PITX3 paired like homeodomain 3 involved_in ISO (MGI:4353482|PMID:19334279) UniProt PMID:19334279 MGI:4353482 NCBI chr28:14,760,741...14,775,584
Ensembl chr28:14,761,094...14,762,716
JBrowse link
G PROX1 prospero homeobox 1 involved_in ISO (MGI:1332720|PMID:10080188) BHF-UCL PMID:10080188 MGI:1332720 NCBI chr 7:11,996,282...12,047,693
Ensembl chr 7:11,996,703...12,044,036
JBrowse link
G SKI SKI proto-oncogene acts_upstream_of_or_within ISO (MGI:3693412|PMID:17003410) MGI PMID:17003410 MGI:3693412 NCBI chr 5:57,144,178...57,216,385
Ensembl chr 5:57,145,825...57,214,403
JBrowse link
G SOX1 SRY-box transcription factor 1 acts_upstream_of_or_within ISO (MGI:1201714|PMID:9512512) MGI PMID:9512512 MGI:1201714 NCBI chr22:59,902,113...59,903,820 JBrowse link
G SOX11 SRY-box transcription factor 11 involved_in ISO (MGI:3797299|PMID:18423449) UniProt PMID:18423449 MGI:3797299
G TDRD7 tudor domain containing 7 involved_in ISS UniProt GO_REF:0000024 NCBI chr11:54,758,092...54,828,766
Ensembl chr11:54,758,826...54,828,743
JBrowse link
G TFAP2A transcription factor AP-2 alpha acts_upstream_of_or_within ISO (MGI:1329246|PMID:9918694), (MGI:3774683|PMID:18224708) MGI PMID:9918694 PMID:18224708 MGI:1329246 MGI:3774683 NCBI chr35:10,157,043...10,180,484
Ensembl chr35:10,157,882...10,180,270
JBrowse link
lens placode formation involved in camera-type eye formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FRS2 fibroblast growth factor receptor substrate 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3513737|PMID:15569927) Ensembl
MGI
PMID:15569927 GO_REF:0000107 MGI:3513737 NCBI chr10:11,445,843...11,552,325
Ensembl chr10:11,539,994...11,552,890
JBrowse link
G PROX1 prospero homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:11850194) Ensembl
BHF-UCL
PMID:11850194 GO_REF:0000107 NCBI chr 7:11,996,282...12,047,693
Ensembl chr 7:11,996,703...12,044,036
JBrowse link
negative regulation of retinal cone cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CASZ1 castor zinc finger 1 acts_upstream_of_or_within ISO (MGI:5629913|PMID:25654255) MGI PMID:25654255 MGI:5629913 NCBI chr 2:85,194,640...85,218,068
Ensembl chr 2:85,176,161...85,232,920
JBrowse link
optic cup formation involved in camera-type eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARID1A AT-rich interaction domain 1A acts_upstream_of_or_within ISO (MGI:5466629|PMID:23129809) MGI PMID:23129809 MGI:5466629 NCBI chr 2:73,331,606...73,401,151
Ensembl chr 2:73,324,852...73,401,102
JBrowse link
optic cup morphogenesis involved in camera-type eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A1 aldehyde dehydrogenase 1 family member A1 acts_upstream_of_or_within ISO (MGI:3624188|PMID:16611695) MGI PMID:16611695 MGI:3624188 NCBI chr 1:84,940,411...84,994,789
Ensembl chr 1:84,940,411...84,994,789
JBrowse link
G ALDH1A3 aldehyde dehydrogenase 1 family member A3 acts_upstream_of_or_within ISO (MGI:3624188|PMID:16611695) MGI PMID:16611695 MGI:3624188 NCBI chr 3:40,130,904...40,168,686
Ensembl chr 3:40,132,726...40,168,664
JBrowse link
G PAX2 paired box 2 involved_in ISO (MGI:84247|PMID:8951055) DFLAT PMID:8951055 MGI:84247 NCBI chr28:13,442,894...13,519,853
Ensembl chr28:13,442,893...13,532,094
JBrowse link
optic cup structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TFAP2A transcription factor AP-2 alpha involved_in ISO (MGI:4439459|PMID:20150232) UniProt PMID:20150232 MGI:4439459 NCBI chr35:10,157,043...10,180,484
Ensembl chr35:10,157,882...10,180,270
JBrowse link
optic vesicle morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SIX3 SIX homeobox 3 involved_in ISO (MGI:2136715|PMID:11458394) UniProt PMID:11458394 MGI:2136715 NCBI chr10:47,332,875...47,369,359
Ensembl chr10:47,332,888...47,343,635
JBrowse link
G TFAP2A transcription factor AP-2 alpha involved_in ISO (MGI:4439459|PMID:20150232) UniProt PMID:20150232 MGI:4439459 NCBI chr35:10,157,043...10,180,484
Ensembl chr35:10,157,882...10,180,270
JBrowse link
post-embryonic camera-type eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BAK1 BCL2 antagonist/killer 1 acts_upstream_of_or_within ISO (MGI:3692135|PMID:15955981) MGI PMID:15955981 MGI:3692135 NCBI chr12:2,950,359...2,957,604
Ensembl chr12:2,948,364...2,957,018
JBrowse link
G BAX BCL2 associated X, apoptosis regulator acts_upstream_of_or_within ISO (MGI:3692135|PMID:15955981) MGI PMID:15955981 MGI:3692135 NCBI chr 1:107,423,388...107,426,464
Ensembl chr 1:107,422,424...107,426,464
JBrowse link
G FLT1 fms related receptor tyrosine kinase 1 acts_upstream_of_or_within ISO (MGI:5318610|PMID:22426483) MGI PMID:22426483 MGI:5318610 NCBI chr25:11,231,958...11,410,379
Ensembl chr25:11,231,737...11,407,621
JBrowse link
G HMGN1 high mobility group nucleosome binding domain 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3614611|PMID:16466397) Ensembl
MGI
PMID:16466397 GO_REF:0000107 MGI:3614611 NCBI chr31:34,275,400...34,283,373
Ensembl chr31:34,275,839...34,282,340
JBrowse link
G KDR kinase insert domain receptor acts_upstream_of_or_within ISO (MGI:5318610|PMID:22426483) MGI PMID:22426483 MGI:5318610 NCBI chr13:47,442,861...47,484,574
Ensembl chr13:47,442,764...47,485,042
JBrowse link
G MIR23A microRNA mir-23a acts_upstream_of_or_within ISO (MGI:5516374|PMID:24101522) MGI PMID:24101522 MGI:5516374 NCBI chr20:48,620,335...48,620,386
Ensembl chr20:48,620,323...48,620,397
JBrowse link
post-embryonic retina morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCDC66 coiled-coil domain containing 66 acts_upstream_of_or_within ISO (MGI:5141557|PMID:21680557) MGI PMID:21680557 MGI:5141557 NCBI chr20:33,714,224...33,758,846
Ensembl chr20:33,714,224...33,758,799
JBrowse link
G CRB1 crumbs cell polarity complex component 1 acts_upstream_of_or_within
involved_in
ISO (MGI:3051713|PMID:15316081), (MGI:3690408|PMID:16885194)
(MGI:2675211|PMID:12915475)
MGI PMID:12915475 PMID:15316081 PMID:16885194 MGI:2675211 MGI:3051713 MGI:3690408 NCBI chr 7:5,277,394...5,490,542
Ensembl chr 7:5,277,394...5,490,470
JBrowse link
G DSCAM DS cell adhesion molecule acts_upstream_of_or_within ISO (MGI:3768917|PMID:18216855) MGI PMID:18216855 MGI:3768917 NCBI chr31:34,666,300...35,277,651
Ensembl chr31:34,669,424...35,400,160
JBrowse link
G GRK1 G protein-coupled receptor kinase 1 acts_upstream_of_or_within ISO (MGI:1334014|PMID:10097103) MGI PMID:10097103 MGI:1334014 NCBI chr22:60,911,953...60,929,330
Ensembl chr22:60,911,953...60,926,146
JBrowse link
retina layer formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHI1 Abelson helper integration site 1 involved_in ISS UniProt GO_REF:0000024 NCBI chr 1:27,966,101...28,199,163
Ensembl chr 1:27,998,874...28,198,351
JBrowse link
G ARL6 ADP ribosylation factor like GTPase 6 acts_upstream_of_or_within ISO (MGI:5306530|PMID:22139371)
(MGI:4442100|PMID:20333246)
MGI PMID:20333246 PMID:22139371 MGI:4442100 MGI:5306530 NCBI chr33:4,797,944...4,857,566
Ensembl chr33:4,800,917...4,839,635
JBrowse link
G CALB1 calbindin 1 acts_upstream_of_or_within ISO (PMID:10741426) UniProt PMID:10741426 NCBI chr29:35,551,836...35,572,985
Ensembl chr29:35,552,436...35,572,925
JBrowse link
G CRB1 crumbs cell polarity complex component 1 acts_upstream_of_or_within ISO (MGI:3696487|PMID:17234588) MGI PMID:17234588 MGI:3696487 NCBI chr 7:5,277,394...5,490,542
Ensembl chr 7:5,277,394...5,490,470
JBrowse link
G FAT3 FAT atypical cadherin 3 acts_upstream_of_or_within ISO (MGI:5292419|PMID:21903076) MGI PMID:21903076 MGI:5292419 NCBI chr21:7,711,304...8,355,609
Ensembl chr21:7,711,995...8,213,266
JBrowse link
G FJX1 four-jointed box kinase 1 acts_upstream_of_or_within ISO (MGI:5292419|PMID:21903076) MGI PMID:21903076 MGI:5292419 NCBI chr18:32,391,276...32,393,321 JBrowse link
G FOXN4 forkhead box N4 involved_in ISO (MGI:3054139|PMID:15363391) UniProt PMID:15363391 MGI:3054139 NCBI chr26:17,730,638...17,757,173
Ensembl chr26:17,728,878...17,755,602
JBrowse link
G HIPK1 homeodomain interacting protein kinase 1 involved_in ISO (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chr17:51,732,079...51,783,534
Ensembl chr17:51,732,016...51,781,063
JBrowse link
G HIPK2 homeodomain interacting protein kinase 2 involved_in ISO (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chr16:9,066,957...9,256,916
Ensembl chr16:9,066,970...9,244,526
JBrowse link
G IGFN1 immunoglobulin like and fibronectin type III domain containing 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 7:1,462,093...1,490,330 JBrowse link
G IRX6 iroquois homeobox 6 acts_upstream_of_or_within ISO (MGI:5447580|PMID:23172916) MGI PMID:23172916 MGI:5447580 NCBI chr 2:60,630,688...60,636,285
Ensembl chr 2:60,630,447...60,636,416
JBrowse link
G LHX1 LIM homeobox 1 involved_in
acts_upstream_of_or_within
ISS
ISO
(PMID:10741426) UniProt
UniProt
PMID:10741426 GO_REF:0000024 NCBI chr 9:36,760,890...36,768,345
Ensembl chr 9:36,761,826...36,768,164
JBrowse link
G MEGF11 multiple EGF like domains 11 involved_in ISO (MGI:5316136|PMID:22407321) UniProt PMID:22407321 MGI:5316136 NCBI chr30:30,224,538...30,561,565
Ensembl chr30:30,227,160...30,561,562
JBrowse link
G PROM1 prominin 1 involved_in ISO (MGI:3838023|PMID:19228982) UniProt PMID:19228982 MGI:3838023 NCBI chr 3:64,229,487...64,362,346
Ensembl chr 3:64,260,685...64,382,009
JBrowse link
G PTF1A pancreas associated transcription factor 1a involved_in ISO (MGI:3691257|PMID:17075007) UniProt PMID:17075007 MGI:3691257 NCBI chr 2:10,069,594...10,071,360
Ensembl chr 2:10,069,581...10,071,336
JBrowse link
G PTPRM protein tyrosine phosphatase receptor type M involved_in ISO (PMID:14623235) UniProt PMID:14623235 NCBI chr 7:74,005,682...74,597,498
Ensembl chr 7:73,815,186...74,609,116
JBrowse link
G RDH13 retinol dehydrogenase 13 acts_upstream_of_or_within ISO (MGI:5462166|PMID:22605914) MGI PMID:22605914 MGI:5462166 NCBI chr 1:102,539,363...102,552,749
Ensembl chr 1:102,539,124...102,554,027
JBrowse link
G RS1 retinoschisin 1 acts_upstream_of_or_within ISO (MGI:2179152|PMID:11983912)
(MGI:3055638|PMID:15326152)
MGI PMID:11983912 PMID:15326152 MGI:2179152 MGI:3055638 NCBI chr  X:14,727,016...14,749,674
Ensembl chr  X:14,727,062...14,749,492
JBrowse link
G SDK2 sidekick cell adhesion molecule 2 involved_in ISO (MGI:5693671|PMID:26287463) UniProt PMID:26287463 MGI:5693671 NCBI chr 9:6,788,305...6,868,052
Ensembl chr 9:6,734,504...6,867,078
JBrowse link
G SLC1A1 solute carrier family 1 member 1 acts_upstream_of_or_within
involved_in
ISO (MGI:4414613|PMID:19766171)
(MGI:6155272|PMID:29677370)
MGI PMID:19766171 PMID:29677370 MGI:4414613 MGI:6155272 NCBI chr 1:92,898,274...92,978,260
Ensembl chr 1:92,898,274...92,978,260
JBrowse link
G TFAP2A transcription factor AP-2 alpha involved_in ISO (PMID:20607706) UniProt PMID:20607706 NCBI chr35:10,157,043...10,180,484
Ensembl chr35:10,157,882...10,180,270
JBrowse link
G TFAP2B transcription factor AP-2 beta involved_in ISO (PMID:20607706) UniProt PMID:20607706 NCBI chr12:18,544,176...18,574,300
Ensembl chr12:18,544,446...18,572,902
JBrowse link
G TSPAN12 tetraspanin 12 involved_in ISO (MGI:4410396|PMID:19837033) UniProt PMID:19837033 MGI:4410396 NCBI chr14:58,941,658...59,005,507
Ensembl chr14:58,941,551...59,005,463
JBrowse link
retina morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BHLHE22 basic helix-loop-helix family member e22 acts_upstream_of_or_within ISO (MGI:3703109|PMID:17092954) MGI PMID:17092954 MGI:3703109
G CRB1 crumbs cell polarity complex component 1 acts_upstream_of_or_within
involved_in
ISO (MGI:3696487|PMID:17234588), (MGI:5608935|PMID:25147295)
(MGI:2675211|PMID:12915475)
MGI PMID:12915475 PMID:17234588 PMID:25147295 MGI:2675211 MGI:3696487 MGI:5608935 NCBI chr 7:5,277,394...5,490,542
Ensembl chr 7:5,277,394...5,490,470
JBrowse link
G DLL1 delta like canonical Notch ligand 1 involved_in ISO (MGI:3848562|PMID:19389377) UniProt PMID:19389377 MGI:3848562 NCBI chr12:72,265,078...72,272,347
Ensembl chr12:72,265,682...72,272,348
JBrowse link
G IMPG2 interphotoreceptor matrix proteoglycan 2 acts_upstream_of_or_within ISO (MGI:6423642|PMID:32265257) MGI PMID:32265257 MGI:6423642 NCBI chr33:7,706,069...7,785,817
Ensembl chr33:7,709,683...7,785,309
JBrowse link
G LRP5 LDL receptor related protein 5 involved_in ISO (PMID:15346351) BHF-UCL PMID:15346351 NCBI chr18:49,439,494...49,555,375
Ensembl chr18:49,439,483...49,516,396
JBrowse link
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (MGI:3823171|PMID:18985738) MGI PMID:18985738 MGI:3823171 NCBI chr27:34,003,334...34,166,334
Ensembl chr27:34,003,539...34,161,437
JBrowse link
G MAN2A1 mannosidase alpha class 2A member 1 acts_upstream_of_or_within ISO (MGI:4453938|PMID:20144606) MGI PMID:20144606 MGI:4453938 NCBI chr 3:2,340,392...2,477,458
Ensembl chr 3:2,330,959...2,488,393
JBrowse link
G MFSD2A major facilitator superfamily domain containing 2A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5789479|PMID:27008858) Ensembl
ARUK-UCL
PMID:27008858 GO_REF:0000107 MGI:5789479 NCBI chr15:2,966,433...2,979,030
Ensembl chr15:2,966,461...2,978,968
JBrowse link
G NECTIN3 nectin cell adhesion molecule 3 acts_upstream_of_or_within ISO (MGI:3604842|PMID:15728677) MGI PMID:15728677 MGI:3604842 NCBI chr33:15,868,813...16,173,158
Ensembl chr33:15,911,411...15,933,307
JBrowse link
G PROM1 prominin 1 involved_in ISO (PMID:18654668) BHF-UCL PMID:18654668 NCBI chr 3:64,229,487...64,362,346
Ensembl chr 3:64,260,685...64,382,009
JBrowse link
G PTF1A pancreas associated transcription factor 1a acts_upstream_of_or_within ISO (MGI:3701413|PMID:17301087) MGI PMID:17301087 MGI:3701413 NCBI chr 2:10,069,594...10,071,360
Ensembl chr 2:10,069,581...10,071,336
JBrowse link
G ROM1 retinal outer segment membrane protein 1 acts_upstream_of_or_within ISO (MGI:4437581|PMID:20300562) MGI PMID:20300562 MGI:4437581 NCBI chr18:54,025,603...54,027,803
Ensembl chr18:54,025,606...54,027,375
JBrowse link
G RP1 RP1 axonemal microtubule associated acts_upstream_of_or_within ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chr29:6,079,519...6,136,009
Ensembl chr29:6,079,377...6,136,009
JBrowse link
G RPE65 retinoid isomerohydrolase RPE65 acts_upstream_of_or_within ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chr 6:76,887,399...76,911,133
Ensembl chr 6:76,887,399...76,911,131
JBrowse link
G RPGR retinitis pigmentosa GTPase regulator acts_upstream_of_or_within ISO (MGI:1354839|PMID:10725384) MGI PMID:10725384 MGI:1354839 NCBI chr  X:33,056,371...33,105,036
Ensembl chr  X:32,745,020...33,330,841
JBrowse link
G SOX2 SRY-box transcription factor 2 acts_upstream_of_or_within ISO (MGI:3624065|PMID:16651659) MGI PMID:16651659 MGI:3624065 NCBI chr34:14,853,000...14,855,153 JBrowse link
G VSX2 visual system homeobox 2 acts_upstream_of_or_within ISO (MGI:3701027|PMID:16854970), (MGI:79586|PMID:8630490) MGI PMID:8630490 PMID:16854970 MGI:3701027 MGI:79586 NCBI chr 8:47,455,337...47,473,786
Ensembl chr 8:47,455,340...47,473,684
JBrowse link
retinal bipolar neuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BHLHE22 basic helix-loop-helix family member e22 acts_upstream_of_or_within ISO (MGI:3703109|PMID:17092954) MGI PMID:17092954 MGI:3703109
G CABP4 calcium binding protein 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3609280|PMID:16249514) Ensembl
MGI
PMID:16249514 GO_REF:0000107 MGI:3609280 NCBI chr18:50,014,698...50,017,854
Ensembl chr18:50,014,698...50,017,854
JBrowse link
G CASZ1 castor zinc finger 1 acts_upstream_of_or_within ISO (MGI:5630049|PMID:24467707) MGI PMID:24467707 MGI:5630049 NCBI chr 2:85,194,640...85,218,068
Ensembl chr 2:85,176,161...85,232,920
JBrowse link
G IKZF1 IKAROS family zinc finger 1 acts_upstream_of_or_within ISO (MGI:5629913|PMID:25654255) MGI PMID:25654255 MGI:5629913 NCBI chr18:1,661,851...1,750,987
Ensembl chr18:1,661,690...1,770,768
JBrowse link
G IRX5 iroquois homeobox 5 acts_upstream_of_or_within ISO (MGI:3776945|PMID:18322081) MGI PMID:18322081 MGI:3776945 NCBI chr 2:60,957,353...60,978,782
Ensembl chr 2:60,968,193...61,041,385
JBrowse link
G IRX6 iroquois homeobox 6 acts_upstream_of_or_within ISO (MGI:5447580|PMID:23172916) MGI PMID:23172916 MGI:5447580 NCBI chr 2:60,630,688...60,636,285
Ensembl chr 2:60,630,447...60,636,416
JBrowse link
G VSX1 visual system homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3029641|PMID:14745032)
(MGI:3776945|PMID:18322081)
(MGI:3039332|PMID:15043821)
Ensembl
MGI
PMID:14745032 PMID:15043821 PMID:18322081 GO_REF:0000107 MGI:3029641 MGI:3039332 MGI:3776945 NCBI chr23:1,268,465...1,274,854
Ensembl chr23:1,269,139...1,274,784
JBrowse link
G VSX2 visual system homeobox 2 acts_upstream_of_or_within ISO (MGI:79586|PMID:8630490) MGI PMID:8630490 MGI:79586 NCBI chr 8:47,455,337...47,473,786
Ensembl chr 8:47,455,340...47,473,684
JBrowse link
G ZHX2 zinc fingers and homeoboxes 2 involved_in ISO (MGI:6214404|PMID:30146259) UniProt PMID:30146259 MGI:6214404 NCBI chr13:21,231,985...21,393,756
Ensembl chr13:21,377,316...21,379,832
JBrowse link
retinal cone cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHI1 Abelson helper integration site 1 involved_in ISO (MGI:4437526|PMID:20081859) CACAO PMID:20081859 MGI:4437526 NCBI chr 1:27,966,101...28,199,163
Ensembl chr 1:27,998,874...28,198,351
JBrowse link
G CABP4 calcium binding protein 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3609280|PMID:16249514) Ensembl
MGI
PMID:16249514 GO_REF:0000107 MGI:3609280 NCBI chr18:50,014,698...50,017,854
Ensembl chr18:50,014,698...50,017,854
JBrowse link
G CNGA3 cyclic nucleotide gated channel subunit alpha 3 acts_upstream_of_or_within ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chr10:44,232,716...44,278,555
Ensembl chr10:44,234,004...44,260,746
JBrowse link
G CRB2 crumbs cell polarity complex component 2 involved_in ISO (MGI:5461109|PMID:23001562) UniProt PMID:23001562 MGI:5461109 NCBI chr 9:59,427,661...59,450,436
Ensembl chr 9:59,427,569...59,450,434
JBrowse link
G DIO3 iodothyronine deiodinase 3 acts_upstream_of_or_within ISO (MGI:4441081|PMID:20203194) MGI PMID:20203194 MGI:4441081 NCBI chr 8:69,696,779...69,698,880 JBrowse link
G GNAT2 G protein subunit alpha transducin 2 acts_upstream_of_or_within ISO (MGI:3714271|PMID:17065522), (MGI:4849309|PMID:21052544) MGI PMID:17065522 PMID:21052544 MGI:3714271 MGI:4849309 NCBI chr 6:42,259,404...42,271,197
Ensembl chr 6:42,259,702...42,268,082
JBrowse link
G HCN1 hyperpolarization activated cyclic nucleotide gated potassium channel 1 acts_upstream_of_or_within ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chr 4:64,777,069...65,162,603
Ensembl chr 4:64,775,577...65,160,444
JBrowse link
G MIR124-1 microRNA mir-124-1 acts_upstream_of_or_within ISO (MGI:5303045|PMID:21857657) MGI PMID:21857657 MGI:5303045 NCBI chr25:28,188,264...28,188,322
Ensembl chr25:28,188,250...28,188,334
JBrowse link
G MIR124-2 microRNA mir-124-2 acts_upstream_of_or_within ISO (MGI:5303045|PMID:21857657) MGI PMID:21857657 MGI:5303045 NCBI chr29:14,264,389...14,264,445 JBrowse link
G MIR183 microRNA mir-183 acts_upstream_of_or_within ISO (MGI:5469752|PMID:23341629) MGI PMID:23341629 MGI:5469752 NCBI chr14:7,068,542...7,068,603
Ensembl chr14:7,068,519...7,068,625
JBrowse link
G MIR96 microRNA mir-96 acts_upstream_of_or_within ISO (MGI:5469752|PMID:23341629) MGI PMID:23341629 MGI:5469752 NCBI chr14:7,068,754...7,068,842
Ensembl chr14:7,068,754...7,068,842
JBrowse link
G PDE6C phosphodiesterase 6C acts_upstream_of_or_within ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chr28:7,839,604...7,887,827
Ensembl chr28:7,839,847...7,887,776
JBrowse link
G RORB RAR related orphan receptor B involved_in ISO (MGI:3652638|PMID:16574740) UniProt PMID:16574740 MGI:3652638 NCBI chr 1:83,470,569...83,666,200
Ensembl chr 1:83,476,816...83,666,061
JBrowse link
G RP1 RP1 axonemal microtubule associated involved_in ISS UniProt GO_REF:0000024 NCBI chr29:6,079,519...6,136,009
Ensembl chr29:6,079,377...6,136,009
JBrowse link
G THRB thyroid hormone receptor beta acts_upstream_of ISO (MGI:4441081|PMID:20203194) MGI PMID:20203194 MGI:4441081 NCBI chr23:19,278,650...19,648,547
Ensembl chr23:19,277,493...19,660,283
JBrowse link
G THY1 Thy-1 cell surface antigen involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:14,503,902...14,509,113
Ensembl chr 5:14,503,902...14,509,113
JBrowse link
retinal rod cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHI1 Abelson helper integration site 1 involved_in ISO (MGI:4437526|PMID:20081859) CACAO PMID:20081859 MGI:4437526 NCBI chr 1:27,966,101...28,199,163
Ensembl chr 1:27,998,874...28,198,351
JBrowse link
G ALMS1 ALMS1 centrosome and basal body associated protein acts_upstream_of_or_within ISO (MGI:3588454|PMID:16000322) MGI PMID:16000322 MGI:3588454 NCBI chr17:49,301,397...49,513,729
Ensembl chr17:49,301,606...49,513,625
JBrowse link
G BHLHE23 basic helix-loop-helix family member e23 acts_upstream_of_or_within ISO (MGI:3814679|PMID:17255172) MGI PMID:17255172 MGI:3814679 NCBI chr24:46,791,368...46,792,019 JBrowse link
G CCDC66 coiled-coil domain containing 66 acts_upstream_of_or_within ISO (MGI:5141557|PMID:21680557) MGI PMID:21680557 MGI:5141557 NCBI chr20:33,714,224...33,758,846
Ensembl chr20:33,714,224...33,758,799
JBrowse link
G CFH complement factor H acts_upstream_of_or_within ISO (MGI:3760334|PMID:17921253) MGI PMID:17921253 MGI:3760334 NCBI chr38:2,878,677...2,956,226 JBrowse link
G NAGLU N-acetyl-alpha-glucosaminidase involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3769195|PMID:17712420) Ensembl
MGI
PMID:17712420 GO_REF:0000107 MGI:3769195 NCBI chr 9:20,407,296...20,414,094
Ensembl chr 9:20,407,281...20,414,056
JBrowse link
G NRL neural retina leucine zipper acts_upstream_of_or_within ISO (MGI:2385798|PMID:11694879) MGI PMID:11694879 MGI:2385798 NCBI chr 8:4,086,487...4,090,373
Ensembl chr 8:4,086,508...4,089,216
JBrowse link
G NTRK2 neurotrophic receptor tyrosine kinase 2 acts_upstream_of_or_within ISO (MGI:3039190|PMID:10516311) MGI PMID:10516311 MGI:3039190 NCBI chr 1:74,447,927...74,777,910
Ensembl chr 1:74,449,060...74,777,032
JBrowse link
G RORB RAR related orphan receptor B involved_in ISO (MGI:3652638|PMID:16574740), (MGI:4366105|PMID:19805139) UniProt PMID:16574740 PMID:19805139 MGI:3652638 MGI:4366105 NCBI chr 1:83,470,569...83,666,200
Ensembl chr 1:83,476,816...83,666,061
JBrowse link
G RP1 RP1 axonemal microtubule associated involved_in ISS UniProt GO_REF:0000024 NCBI chr29:6,079,519...6,136,009
Ensembl chr29:6,079,377...6,136,009
JBrowse link
G RPGRIP1 RPGR interacting protein 1 involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr15:18,316,887...18,388,724
Ensembl chr15:18,316,887...18,387,735
JBrowse link
G TRPM1 transient receptor potential cation channel subfamily M member 1 acts_upstream_of_or_within ISO (MGI:4420740|PMID:19966281) MGI PMID:19966281 MGI:4420740 NCBI chr 3:37,860,730...37,949,108
Ensembl chr 3:37,817,339...37,949,108
JBrowse link
retinal rod cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PTN pleiotrophin ISO RGD PMID:16914133 RGD:9831439 NCBI chr16:11,283,078...11,382,820
Ensembl chr16:11,283,077...11,382,814
JBrowse link
G SOX8 SRY-box transcription factor 8 acts_upstream_of_or_within ISO (MGI:4368088|PMID:19490914) MGI PMID:19490914 MGI:4368088 NCBI chr 6:39,667,941...39,672,716
Ensembl chr 6:39,668,232...39,672,638
JBrowse link
G SOX9 SRY-box transcription factor 9 involved_in
acts_upstream_of_or_within
ISS
ISO
(MGI:4368088|PMID:19490914) UniProt
MGI
PMID:19490914 GO_REF:0000024 MGI:4368088 NCBI chr 9:8,275,049...8,278,172
Ensembl chr 9:8,275,049...8,278,172
JBrowse link
retinal rod cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CASZ1 castor zinc finger 1 acts_upstream_of_or_within ISO (MGI:5629913|PMID:25654255) MGI PMID:25654255 MGI:5629913 NCBI chr 2:85,194,640...85,218,068
Ensembl chr 2:85,176,161...85,232,920
JBrowse link
rod bipolar cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PTN pleiotrophin ISO RGD PMID:16914133 RGD:9831439 NCBI chr16:11,283,078...11,382,820
Ensembl chr16:11,283,077...11,382,814
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 13874
    developmental process 6146
      anatomical structure morphogenesis 2716
        animal organ morphogenesis 1095
          sensory organ morphogenesis 314
            eye morphogenesis 181
              camera-type eye morphogenesis 147
                cell motility involved in camera-type eye morphogenesis 0
                ciliary body morphogenesis 5
                embryonic camera-type eye morphogenesis + 30
                establishment of epithelial cell apical/basal polarity involved in camera-type eye morphogenesis 1
                iris morphogenesis 7
                lens morphogenesis in camera-type eye + 27
                post-embryonic camera-type eye morphogenesis 6
                retina morphogenesis in camera-type eye + 76
Path 2
Term Annotations click to browse term
  biological_process 13874
    developmental process 6146
      anatomical structure development 5718
        multicellular organism development 5216
          system development 4906
            sensory system development 454
              visual system development 450
                eye development 447
                  eye morphogenesis 181
                    camera-type eye morphogenesis 147
                      cell motility involved in camera-type eye morphogenesis 0
                      ciliary body morphogenesis 5
                      embryonic camera-type eye morphogenesis + 30
                      establishment of epithelial cell apical/basal polarity involved in camera-type eye morphogenesis 1
                      iris morphogenesis 7
                      lens morphogenesis in camera-type eye + 27
                      post-embryonic camera-type eye morphogenesis 6
                      retina morphogenesis in camera-type eye + 76
paths to the root