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ONTOLOGY REPORT - ANNOTATIONS

Term:camera-type eye morphogenesis
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Accession:GO:0048593 term browser browse the term
Definition:The process in which the anatomical structures of the eye are generated and organized. The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field.
Synonyms:exact_synonym: camera-style eye morphogenesis
 alt_id: GO:0048594;   GO:0048595

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camera-type eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Adamts9 ADAM metallopeptidase with thrombospondin type 1 motif 9 acts_upstream_of_or_within ISO (PMID:27687499) MGI PMID:27687499 NCBI chrNW_004955517:1,302,560...1,443,708
Ensembl chrNW_004955517:1,302,922...1,440,245 		JBrowse link
G Aqp1 aquaporin 1 (Colton blood group) acts_upstream_of_or_within ISO (PMID:11891232) MGI PMID:11891232 NCBI chrNW_004955410:32,066,196...32,078,661
Ensembl chrNW_004955410:32,066,196...32,078,717 		JBrowse link
G Aqp5 aquaporin 5 acts_upstream_of_or_within ISO (PMID:11891232) MGI PMID:11891232 NCBI chrNW_004955547:558,296...562,455
Ensembl chrNW_004955547:558,927...564,376 		JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO (PMID:9268572) MGI PMID:9268572 NCBI chrNW_004955409:9,432,835...9,439,680
Ensembl chrNW_004955409:9,432,841...9,440,303 		JBrowse link
G Bmp7 bone morphogenetic protein 7 acts_upstream_of_or_within ISO (PMID:16854970)
(PMID:16154126)		 MGI PMID:16154126 PMID:16854970 NCBI chrNW_004955445:2,154,057...2,235,594
Ensembl chrNW_004955445:2,153,170...2,235,795 		JBrowse link
G Col8a1 collagen type VIII alpha 1 chain acts_upstream_of_or_within ISO (PMID:16051690) MGI PMID:16051690 NCBI chrNW_004955427:1,187,550...1,335,794
Ensembl chrNW_004955427:1,187,550...1,335,794 		JBrowse link
G Col8a2 collagen type VIII alpha 2 chain acts_upstream_of_or_within ISO (PMID:16051690) MGI PMID:16051690 NCBI chrNW_004955452:14,127,654...14,149,582
Ensembl chrNW_004955452:14,127,630...14,155,212 		JBrowse link
G Ephb1 EPH receptor B1 acts_upstream_of_or_within ISO (PMID:12971893) MGI PMID:12971893 NCBI chrNW_004955501:3,424,112...3,821,727
Ensembl chrNW_004955501:3,423,977...3,821,890 		JBrowse link
G Ephb2 EPH receptor B2 acts_upstream_of_or_within ISO (PMID:12971893) MGI PMID:12971893 NCBI chrNW_004955452:2,844,713...2,986,790
Ensembl chrNW_004955452:2,844,713...2,980,445 		JBrowse link
G Fat1 FAT atypical cadherin 1 involved_in ISO (PMID:26114487) MGI PMID:26114487 NCBI chrNW_004955403:22,502,625...22,618,513
Ensembl chrNW_004955403:22,502,625...22,619,211 		JBrowse link
G Gdf11 growth differentiation factor 11 acts_upstream_of_or_within ISO (PMID:15976303) MGI PMID:15976303 NCBI chrNW_004955458:3,388,402...3,398,040
Ensembl chrNW_004955458:3,388,402...3,398,040 		JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (PMID:8387379) MGI PMID:8387379 NCBI chrNW_004955460:1,528,457...1,805,584
Ensembl chrNW_004955460:1,528,412...1,805,918 		JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha acts_upstream_of_or_within ISO (PMID:22627278) MGI PMID:22627278 NCBI chrNW_004955466:8,000,311...8,022,497
Ensembl chrNW_004955466:8,000,044...8,022,497 		JBrowse link
G Ift122 intraflagellar transport 122 involved_in ISO (MGI:3827087|PMID:19000668) UniProt PMID:19000668 MGI:3827087 NCBI chrNW_004955429:17,795,757...17,858,609
Ensembl chrNW_004955429:17,794,879...17,858,609 		JBrowse link
G LOC102009926 chromosome unknown open reading frame, human C12orf57 involved_in ISO (PMID:23453665), (PMID:23633300), (PMID:24798461) UniProt PMID:23453665 PMID:23633300 PMID:24798461 NCBI chrNW_004955413:4,524,236...4,525,760
Ensembl chrNW_004955413:4,524,236...4,525,760 		JBrowse link
G Mfn2 mitofusin 2 acts_upstream_of_or_within ISO (PMID:16104381) MGI PMID:16104381 NCBI chrNW_004955486:1,937,873...1,962,577
Ensembl chrNW_004955486:1,937,802...1,962,772 		JBrowse link
G Nectin1 nectin cell adhesion molecule 1 acts_upstream_of_or_within ISO (PMID:15728677) MGI PMID:15728677 NCBI chrNW_004955412:20,683,007...20,745,069
Ensembl chrNW_004955412:20,682,861...20,745,069 		JBrowse link
G Nf1 neurofibromin 1 acts_upstream_of_or_within ISO (PMID:7926784) MGI PMID:7926784 NCBI chrNW_004955481:6,145,855...6,404,179
Ensembl chrNW_004955481:6,145,855...6,404,179 		JBrowse link
G Ring1 ring finger protein 1 acts_upstream_of_or_within ISO (PMID:16624538) MGI PMID:16624538 NCBI chrNW_004955437:1,782,156...1,785,811
Ensembl chrNW_004955437:1,782,115...1,788,842 		JBrowse link
G Ski SKI proto-oncogene acts_upstream_of_or_within ISO (PMID:17003410) MGI PMID:17003410 NCBI chrNW_004955486:8,857,693...8,921,821
Ensembl chrNW_004955486:8,857,693...8,921,821 		JBrowse link
G Tenm3 teneurin transmembrane protein 3 involved_in ISO (PMID:22766609) UniProt PMID:22766609 NCBI chrNW_004955403:25,920,919...26,534,817
Ensembl chrNW_004955403:25,923,750...26,365,894 		JBrowse link
G Vegfa vascular endothelial growth factor A acts_upstream_of_or_within ISO (PMID:16251428) MGI PMID:16251428 NCBI chrNW_004955437:9,527,445...9,541,908 JBrowse link
G Vhl von Hippel-Lindau tumor suppressor acts_upstream_of_or_within ISO (PMID:22627278) MGI PMID:22627278 NCBI chrNW_004955561:1,573,525...1,578,295
Ensembl chrNW_004955561:1,573,525...1,580,511 		JBrowse link
G Yy1 YY1 transcription factor acts_upstream_of_or_within ISO (PMID:16624538) MGI PMID:16624538 NCBI chrNW_004955438:21,341,374...21,377,674 JBrowse link
camera-type eye photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Prom1 prominin 1 involved_in ISO (PMID:18654668)
(MGI:3838023|PMID:19228982)		 BHF-UCL
UniProt		 PMID:18654668 PMID:19228982 MGI:3838023 NCBI chrNW_004955480:7,955,501...8,059,537
Ensembl chrNW_004955480:7,961,389...8,059,589 		JBrowse link
G Rom1 retinal outer segment membrane protein 1 acts_upstream_of_or_within ISO (PMID:20300562) MGI PMID:20300562 NCBI chrNW_004955599:578,165...580,055
Ensembl chrNW_004955599:573,426...579,812 		JBrowse link
G Sdk2 sidekick cell adhesion molecule 2 involved_in ISO (MGI:5693671|PMID:26287463) UniProt PMID:26287463 MGI:5693671 NCBI chrNW_004955553:353,190...614,806
Ensembl chrNW_004955553:357,112...614,811 		JBrowse link
G Slc4a7 solute carrier family 4 member 7 acts_upstream_of_or_within ISO (PMID:12808454) MGI PMID:12808454 NCBI chrNW_004955430:18,991,615...19,059,590
Ensembl chrNW_004955430:18,991,301...19,067,754 		JBrowse link
G Ttc8 tetratricopeptide repeat domain 8 acts_upstream_of_or_within ISO (PMID:21646512) MGI PMID:21646512 NCBI chrNW_004955438:11,410,196...11,466,044
Ensembl chrNW_004955438:11,409,982...11,466,523 		JBrowse link
camera-type eye photoreceptor cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within ISO (PMID:18582859) MGI PMID:18582859 NCBI chrNW_004955453:14,376,665...14,382,536
Ensembl chrNW_004955453:14,376,718...14,381,747 		JBrowse link
ciliary body morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Jag1 jagged canonical Notch ligand 1 acts_upstream_of_or_within ISO (PMID:23676271) MGI PMID:23676271 NCBI chrNW_004955415:20,490,414...20,526,068
Ensembl chrNW_004955415:20,490,414...20,527,917 		JBrowse link
G Notch2 notch receptor 2 acts_upstream_of_or_within ISO (PMID:23676271) MGI PMID:23676271 NCBI chrNW_004955568:1,660,357...1,812,285
Ensembl chrNW_004955568:1,660,731...1,809,173 		JBrowse link
G Tsku tsukushi, small leucine rich proteoglycan acts_upstream_of_or_within ISO (PMID:21856951) MGI PMID:21856951 NCBI chrNW_004955414:15,166,349...15,178,284
Ensembl chrNW_004955414:15,166,349...15,178,284 		JBrowse link
G Vhl von Hippel-Lindau tumor suppressor acts_upstream_of_or_within ISO (PMID:22627278) MGI PMID:22627278 NCBI chrNW_004955561:1,573,525...1,578,295
Ensembl chrNW_004955561:1,573,525...1,580,511 		JBrowse link
closure of optic fissure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Phactr4 phosphatase and actin regulator 4 involved_in ISO (MGI:3719969|PMID:17609112) UniProt PMID:17609112 MGI:3719969 NCBI chrNW_004955452:7,505,647...7,593,302
Ensembl chrNW_004955452:7,532,966...7,596,546 		JBrowse link
G Sox11 SRY-box transcription factor 11 involved_in ISO (MGI:3797299|PMID:18423449) UniProt PMID:18423449 MGI:3797299 NCBI chrNW_004955487:2,678,961...2,680,869
Ensembl chrNW_004955487:2,679,145...2,680,521 		JBrowse link
cone retinal bipolar cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gnat2 G protein subunit alpha transducin 2 acts_upstream_of_or_within ISO (PMID:29518352)
(PMID:23580486)		 MGI PMID:23580486 PMID:29518352 NCBI chrNW_004955435:13,009,147...13,021,968
Ensembl chrNW_004955435:13,009,147...13,021,968 		JBrowse link
G Naglu N-acetyl-alpha-glucosaminidase acts_upstream_of_or_within ISO (PMID:26607664) MGI PMID:26607664 NCBI chrNW_004955451:16,445,338...16,449,243
Ensembl chrNW_004955451:16,445,338...16,450,062 		JBrowse link
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within ISO (PMID:9071226) MGI PMID:9071226 NCBI chrNW_004955516:4,218,703...4,244,774
Ensembl chrNW_004955516:4,218,703...4,244,846 		JBrowse link
embryonic camera-type eye formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stra6 signaling receptor and transporter of retinol STRA6 involved_in ISO (PMID:17273977) DFLAT PMID:17273977 NCBI chrNW_004955450:3,579,081...3,602,538
Ensembl chrNW_004955450:3,580,662...3,602,600 		JBrowse link
G Twist1 twist family bHLH transcription factor 1 involved_in ISO (PMID:17070479) BHF-UCL PMID:17070479 NCBI chrNW_004955410:22,003,981...22,005,483 JBrowse link
embryonic camera-type eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp7 bone morphogenetic protein 7 acts_upstream_of_or_within ISO (PMID:10049573) MGI PMID:10049573 NCBI chrNW_004955445:2,154,057...2,235,594
Ensembl chrNW_004955445:2,153,170...2,235,795 		JBrowse link
G Cited2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 acts_upstream_of_or_within ISO (PMID:18653562) MGI PMID:18653562 NCBI chrNW_004955436:20,370,950...20,372,677
Ensembl chrNW_004955436:20,370,950...20,372,677 		JBrowse link
G Cryaa crystallin alpha A acts_upstream_of_or_within ISO (PMID:18056999) MGI PMID:18056999 NCBI chrNW_004955407:38,880,088...38,892,946
Ensembl chrNW_004955407:38,880,086...38,925,642 		JBrowse link
G Foxf2 forkhead box F2 involved_in ISO (MGI:5297296|PMID:22022403) BHF-UCL PMID:22022403 MGI:5297296 NCBI chrNW_004955465:11,740,374...11,744,619
Ensembl chrNW_004955465:11,740,323...11,744,619 		JBrowse link
G Fzd5 frizzled class receptor 5 involved_in ISO (MGI:3826935|PMID:18832390) CACAO PMID:18832390 MGI:3826935 NCBI chrNW_004955457:7,282,403...7,288,918
Ensembl chrNW_004955457:7,282,403...7,288,918 		JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 involved_in ISO (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chrNW_004955435:17,201,866...17,257,371
Ensembl chrNW_004955435:17,172,651...17,257,371 		JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 involved_in ISO (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chrNW_004955494:3,365,826...3,554,735
Ensembl chrNW_004955494:3,393,049...3,554,844 		JBrowse link
G Ift122 intraflagellar transport 122 acts_upstream_of_or_within ISO (PMID:28778798) MGI PMID:28778798 NCBI chrNW_004955429:17,795,757...17,858,609
Ensembl chrNW_004955429:17,794,879...17,858,609 		JBrowse link
G Ift172 intraflagellar transport 172 acts_upstream_of_or_within ISO (PMID:28778798) MGI PMID:28778798 NCBI chrNW_004955469:9,418,599...9,455,026
Ensembl chrNW_004955469:9,418,609...9,455,026 		JBrowse link
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within ISO (PMID:18582859) MGI PMID:18582859 NCBI chrNW_004955453:14,376,665...14,382,536
Ensembl chrNW_004955453:14,376,718...14,381,747 		JBrowse link
G Kdm2b lysine demethylase 2B involved_in ISO (MGI:4949568|PMID:21220025) BHF-UCL PMID:21220025 MGI:4949568 NCBI chrNW_004955482:6,774,021...6,885,113
Ensembl chrNW_004955482:6,774,059...6,887,171 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:18985738)
(PMID:19653321)		 MGI PMID:18985738 PMID:19653321 NCBI chrNW_004955413:9,080,901...9,237,644
Ensembl chrNW_004955413:9,080,914...9,237,650 		JBrowse link
G Pax6 paired box 6 acts_upstream_of_or_within ISO (PMID:18653562) MGI PMID:18653562 NCBI chrNW_004955476:10,058,979...10,074,668
Ensembl chrNW_004955476:10,058,961...10,074,162 		JBrowse link
G Sp1 Sp1 transcription factor acts_upstream_of_or_within ISO (PMID:17584888) MGI PMID:17584888 NCBI chrNW_004955458:644,435...677,360
Ensembl chrNW_004955458:644,378...677,441 		JBrowse link
G Sp3 Sp3 transcription factor acts_upstream_of_or_within ISO (PMID:17584888) MGI PMID:17584888 NCBI chrNW_004955449:1,347,781...1,404,368 JBrowse link
G Tbx2 T-box transcription factor 2 involved_in ISO (MGI:3487212|PMID:15459098) BHF-UCL PMID:15459098 MGI:3487212 NCBI chrNW_004955451:2,458,612...2,466,264
Ensembl chrNW_004955451:2,457,568...2,466,639 		JBrowse link
G Tfap2a transcription factor AP-2 alpha acts_upstream_of_or_within ISO (PMID:9811866) MGI PMID:9811866 NCBI chrNW_004955465:3,877,896...3,900,259
Ensembl chrNW_004955465:3,882,549...3,898,929 		JBrowse link
G Th tyrosine hydroxylase involved_in ISO (MGI:3617102|PMID:16445854) BHF-UCL PMID:16445854 MGI:3617102 NCBI chrNW_004955422:13,943,590...13,951,102
Ensembl chrNW_004955422:13,943,552...13,951,137 		JBrowse link
G Zeb1 zinc finger E-box binding homeobox 1 acts_upstream_of_or_within ISO (PMID:18436818) MGI PMID:18436818 NCBI chrNW_004955429:23,011,627...23,198,188
Ensembl chrNW_004955429:23,010,790...23,198,250 		JBrowse link
embryonic retina morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdon cell adhesion associated, oncogene regulated acts_upstream_of_or_within ISO (PMID:19754878) MGI PMID:19754878 NCBI chrNW_004955412:27,004,391...27,093,968
Ensembl chrNW_004955412:27,003,919...27,065,989 		JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 involved_in ISO (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chrNW_004955435:17,201,866...17,257,371
Ensembl chrNW_004955435:17,172,651...17,257,371 		JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 involved_in ISO (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chrNW_004955494:3,365,826...3,554,735
Ensembl chrNW_004955494:3,393,049...3,554,844 		JBrowse link
G Lhx1 LIM homeobox 1 involved_in ISO (MGI:3772525|PMID:18094249) UniProt PMID:18094249 MGI:3772525 NCBI chrNW_004955451:1,037,936...1,048,501
Ensembl chrNW_004955451:1,037,825...1,048,501 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:19653321) MGI PMID:19653321 NCBI chrNW_004955413:9,080,901...9,237,644
Ensembl chrNW_004955413:9,080,914...9,237,650 		JBrowse link
G Prox1 prospero homeobox 1 involved_in ISO (PMID:12692551)
(MGI:2658694|PMID:12692551)		 BHF-UCL PMID:12692551 MGI:2658694 NCBI chrNW_004955406:3,715,140...3,770,019
Ensembl chrNW_004955406:3,719,972...3,770,555 		JBrowse link
G Rbp4 retinol binding protein 4 involved_in ISO (MGI:1344892|PMID:10469643) BHF-UCL PMID:10469643 MGI:1344892 NCBI chrNW_004955507:112,342...120,050
Ensembl chrNW_004955507:108,669...120,584 		JBrowse link
establishment of epithelial cell apical/basal polarity involved in camera-type eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fat1 FAT atypical cadherin 1 involved_in ISO (PMID:26114487) MGI PMID:26114487 NCBI chrNW_004955403:22,502,625...22,618,513
Ensembl chrNW_004955403:22,502,625...22,619,211 		JBrowse link
iris morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hif1a hypoxia inducible factor 1 subunit alpha acts_upstream_of_or_within ISO (PMID:22627278) MGI PMID:22627278 NCBI chrNW_004955466:8,000,311...8,022,497
Ensembl chrNW_004955466:8,000,044...8,022,497 		JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 involved_in ISO (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chrNW_004955435:17,201,866...17,257,371
Ensembl chrNW_004955435:17,172,651...17,257,371 		JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 involved_in ISO (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chrNW_004955494:3,365,826...3,554,735
Ensembl chrNW_004955494:3,393,049...3,554,844 		JBrowse link
G Pax6 paired box 6 involved_in ISO (PMID:7550230) DFLAT PMID:7550230 NCBI chrNW_004955476:10,058,979...10,074,668
Ensembl chrNW_004955476:10,058,961...10,074,162 		JBrowse link
G Pitx2 paired like homeodomain 2 involved_in ISO (PMID:9437321) BHF-UCL PMID:9437321 NCBI chrNW_004955457:15,803,493...15,823,193
Ensembl chrNW_004955457:15,803,219...15,823,310 		JBrowse link
G Vhl von Hippel-Lindau tumor suppressor acts_upstream_of_or_within ISO (PMID:22627278) MGI PMID:22627278 NCBI chrNW_004955561:1,573,525...1,578,295
Ensembl chrNW_004955561:1,573,525...1,580,511 		JBrowse link
lens fiber cell morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abi2 abl interactor 2 involved_in ISO (MGI:3525751|PMID:15572692) UniProt PMID:15572692 MGI:3525751 NCBI chrNW_004955457:11,451,851...11,562,692
Ensembl chrNW_004955457:11,451,851...11,562,696 		JBrowse link
G Atf4 activating transcription factor 4 involved_in ISO (MGI:1339872|PMID:10096021), (MGI:1859108|PMID:10885750), (MGI:2158533|PMID:11806972) UniProt PMID:10096021 PMID:10885750 PMID:11806972 MGI:1339872 MGI:1859108 MGI:2158533 NCBI chrNW_004955413:25,406,589...25,408,727
Ensembl chrNW_004955413:25,406,589...25,412,218 		JBrowse link
G Cryaa crystallin alpha A acts_upstream_of_or_within ISO (PMID:18056999)
(PMID:16799046)		 MGI PMID:16799046 PMID:18056999 NCBI chrNW_004955407:38,880,088...38,892,946
Ensembl chrNW_004955407:38,880,086...38,925,642 		JBrowse link
G Epha2 EPH receptor A2 involved_in ISO (MGI:3831440|PMID:18948590) UniProt PMID:18948590 MGI:3831440 NCBI chrNW_004955527:2,120,447...2,151,932
Ensembl chrNW_004955527:2,120,266...2,152,781 		JBrowse link
G Prox1 prospero homeobox 1 involved_in ISO (PMID:11850194)
(MGI:1332720|PMID:10080188)		 BHF-UCL PMID:10080188 PMID:11850194 MGI:1332720 NCBI chrNW_004955406:3,715,140...3,770,019
Ensembl chrNW_004955406:3,719,972...3,770,555 		JBrowse link
G Tbc1d20 TBC1 domain family member 20 acts_upstream_of_or_within ISO (PMID:24239381) MGI PMID:24239381 NCBI chrNW_004955597:291,541...313,799
Ensembl chrNW_004955597:291,541...314,292 		JBrowse link
lens induction in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO (PMID:9851982) MGI PMID:9851982 NCBI chrNW_004955409:9,432,835...9,439,680
Ensembl chrNW_004955409:9,432,841...9,440,303 		JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 involved_in ISO (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chrNW_004955435:17,201,866...17,257,371
Ensembl chrNW_004955435:17,172,651...17,257,371 		JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 involved_in ISO (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chrNW_004955494:3,365,826...3,554,735
Ensembl chrNW_004955494:3,393,049...3,554,844 		JBrowse link
G Pou2f1 POU class 2 homeobox 1 acts_upstream_of_or_within ISO (PMID:17140559) MGI PMID:17140559 NCBI chrNW_004955462:9,545,122...9,710,190
Ensembl chrNW_004955462:9,553,415...9,710,188 		JBrowse link
G Six3 SIX homeobox 3 acts_upstream_of_or_within ISO (PMID:17066077) MGI PMID:17066077 NCBI chrNW_004955441:11,966,389...11,978,545
Ensembl chrNW_004955441:11,966,389...11,979,466 		JBrowse link
G Sox2 SRY-box transcription factor 2 acts_upstream_of_or_within ISO (PMID:17140559) MGI PMID:17140559 NCBI chrNW_004955420:10,671,888...10,674,080
Ensembl chrNW_004955420:10,671,978...10,672,934 		JBrowse link
G Tfap2a transcription factor AP-2 alpha acts_upstream_of_or_within ISO (PMID:10571739) MGI PMID:10571739 NCBI chrNW_004955465:3,877,896...3,900,259
Ensembl chrNW_004955465:3,882,549...3,898,929 		JBrowse link
lens morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bcar3 BCAR3 adaptor protein, NSP family member acts_upstream_of_or_within ISO (PMID:19365570) MGI PMID:19365570 NCBI chrNW_004955423:991,046...1,105,033
Ensembl chrNW_004955423:991,057...1,105,033 		JBrowse link
G Cited2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 acts_upstream_of_or_within ISO (PMID:18653562) MGI PMID:18653562 NCBI chrNW_004955436:20,370,950...20,372,677
Ensembl chrNW_004955436:20,370,950...20,372,677 		JBrowse link
G Cryaa crystallin alpha A acts_upstream_of_or_within ISO (PMID:16799046)
(PMID:8812430)		 MGI PMID:8812430 PMID:16799046 NCBI chrNW_004955407:38,880,088...38,892,946
Ensembl chrNW_004955407:38,880,086...38,925,642 		JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within ISO (PMID:16102745) MGI PMID:16102745 NCBI chrNW_004955420:29,030,716...29,047,447
Ensembl chrNW_004955420:29,030,716...29,047,449 		JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 acts_upstream_of_or_within ISO (PMID:11290300) MGI PMID:11290300 NCBI chrNW_004955514:1,030,244...1,038,590
Ensembl chrNW_004955514:1,025,600...1,038,590 		JBrowse link
G Lctl lactase like involved_in ISO (MGI:6274960|PMID:29425878) UniProt PMID:29425878 MGI:6274960 NCBI chrNW_004955450:9,127,151...9,139,836
Ensembl chrNW_004955450:9,127,174...9,139,211 		JBrowse link
G Meis1 Meis homeobox 1 acts_upstream_of_or_within ISO (PMID:14713950) MGI PMID:14713950 NCBI chrNW_004955424:18,060,499...18,190,425
Ensembl chrNW_004955424:18,058,004...18,190,453 		JBrowse link
G Nectin1 nectin cell adhesion molecule 1 acts_upstream_of_or_within ISO (PMID:15728677) MGI PMID:15728677 NCBI chrNW_004955412:20,683,007...20,745,069
Ensembl chrNW_004955412:20,682,861...20,745,069 		JBrowse link
G Nectin3 nectin cell adhesion molecule 3 acts_upstream_of_or_within ISO (PMID:15728677) MGI PMID:15728677 NCBI chrNW_004955427:11,639,942...11,731,910
Ensembl chrNW_004955427:11,606,909...11,724,004 		JBrowse link
G Pitx3 paired like homeodomain 3 involved_in ISO (MGI:4353482|PMID:19334279) UniProt PMID:19334279 MGI:4353482 NCBI chrNW_004955485:8,130,244...8,140,292
Ensembl chrNW_004955485:8,130,244...8,140,292 		JBrowse link
G Prox1 prospero homeobox 1 involved_in ISO (MGI:1332720|PMID:10080188) BHF-UCL PMID:10080188 MGI:1332720 NCBI chrNW_004955406:3,715,140...3,770,019
Ensembl chrNW_004955406:3,719,972...3,770,555 		JBrowse link
G Ski SKI proto-oncogene acts_upstream_of_or_within ISO (PMID:17003410) MGI PMID:17003410 NCBI chrNW_004955486:8,857,693...8,921,821
Ensembl chrNW_004955486:8,857,693...8,921,821 		JBrowse link
G Sox11 SRY-box transcription factor 11 involved_in ISO (MGI:3797299|PMID:18423449) UniProt PMID:18423449 MGI:3797299 NCBI chrNW_004955487:2,678,961...2,680,869
Ensembl chrNW_004955487:2,679,145...2,680,521 		JBrowse link
G Tdrd7 tudor domain containing 7 involved_in ISO (PMID:21436445)
(MGI:4943339|PMID:21436445)		 UniProt PMID:21436445 MGI:4943339 NCBI chrNW_004955419:27,919,664...27,983,426
Ensembl chrNW_004955419:27,916,011...27,976,163 		JBrowse link
G Tfap2a transcription factor AP-2 alpha acts_upstream_of_or_within ISO (PMID:18224708), (PMID:9918694) MGI PMID:9918694 PMID:18224708 NCBI chrNW_004955465:3,877,896...3,900,259
Ensembl chrNW_004955465:3,882,549...3,898,929 		JBrowse link
lens placode formation involved in camera-type eye formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Frs2 fibroblast growth factor receptor substrate 2 acts_upstream_of_or_within ISO (PMID:15569927) MGI PMID:15569927 NCBI chrNW_004955405:9,785,857...9,884,220
Ensembl chrNW_004955405:9,843,925...9,884,220 		JBrowse link
G Prox1 prospero homeobox 1 involved_in ISO (MGI:3836138|PMID:11850194) BHF-UCL PMID:11850194 MGI:3836138 NCBI chrNW_004955406:3,715,140...3,770,019
Ensembl chrNW_004955406:3,719,972...3,770,555 		JBrowse link
negative regulation of retinal cone cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casz1 castor zinc finger 1 acts_upstream_of_or_within ISO (PMID:25654255) MGI PMID:25654255 NCBI chrNW_004955486:2,923,239...2,975,835 JBrowse link
optic cup formation involved in camera-type eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arid1a AT-rich interaction domain 1A acts_upstream_of_or_within ISO (PMID:23129809) MGI PMID:23129809 NCBI chrNW_004955452:6,068,631...6,120,759
Ensembl chrNW_004955452:6,068,631...6,120,759 		JBrowse link
optic cup morphogenesis involved in camera-type eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a3 aldehyde dehydrogenase 1 family member A3 acts_upstream_of_or_within ISO (PMID:16611695) MGI PMID:16611695 NCBI chrNW_004955416:27,823,611...27,858,112
Ensembl chrNW_004955416:27,823,611...27,858,173 		JBrowse link
G Pax2 paired box 2 involved_in ISO (MGI:84247|PMID:8951055) DFLAT PMID:8951055 MGI:84247 NCBI chrNW_004955485:9,351,913...9,430,607
Ensembl chrNW_004955485:9,350,087...9,430,607 		JBrowse link
optic cup structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tfap2a transcription factor AP-2 alpha involved_in ISO (MGI:4439459|PMID:20150232) UniProt PMID:20150232 MGI:4439459 NCBI chrNW_004955465:3,877,896...3,900,259
Ensembl chrNW_004955465:3,882,549...3,898,929 		JBrowse link
optic vesicle morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Six3 SIX homeobox 3 involved_in ISO (MGI:2136715|PMID:11458394) UniProt PMID:11458394 MGI:2136715 NCBI chrNW_004955441:11,966,389...11,978,545
Ensembl chrNW_004955441:11,966,389...11,979,466 		JBrowse link
G Tfap2a transcription factor AP-2 alpha involved_in ISO (MGI:4439459|PMID:20150232) UniProt PMID:20150232 MGI:4439459 NCBI chrNW_004955465:3,877,896...3,900,259
Ensembl chrNW_004955465:3,882,549...3,898,929 		JBrowse link
post-embryonic camera-type eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bak1 BCL2 antagonist/killer 1 acts_upstream_of_or_within ISO (PMID:15955981) MGI PMID:15955981 NCBI chrNW_004955437:2,036,415...2,041,997
Ensembl chrNW_004955437:2,036,415...2,041,997 		JBrowse link
G Bax BCL2 associated X, apoptosis regulator acts_upstream_of_or_within ISO (PMID:15955981) MGI PMID:15955981 NCBI chrNW_004955559:1,695,960...1,700,246
Ensembl chrNW_004955559:1,695,960...1,700,244 		JBrowse link
G Flt1 fms related receptor tyrosine kinase 1 acts_upstream_of_or_within ISO (PMID:22426483) MGI PMID:22426483 NCBI chrNW_004955497:7,653,309...7,831,737
Ensembl chrNW_004955497:7,653,248...7,831,472 		JBrowse link
G Hmgn1 high mobility group nucleosome binding domain 1 acts_upstream_of_or_within ISO (PMID:16466397) MGI PMID:16466397 NCBI chrNW_004955407:38,136,386...38,142,587
Ensembl chrNW_004955407:38,136,386...38,143,479 		JBrowse link
G Kdr kinase insert domain receptor acts_upstream_of_or_within ISO (PMID:22426483) MGI PMID:22426483 NCBI chrNW_004955447:15,810,816...15,851,702
Ensembl chrNW_004955447:15,810,815...15,853,583 		JBrowse link
post-embryonic retina morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crb1 crumbs cell polarity complex component 1 acts_upstream_of_or_within
involved_in		 ISO (PMID:15316081), (PMID:16885194)
(PMID:12915475)		 MGI PMID:12915475 PMID:15316081 PMID:16885194 NCBI chrNW_004955406:33,817,754...34,005,937
Ensembl chrNW_004955406:33,817,605...34,005,943 		JBrowse link
G Dscam DS cell adhesion molecule acts_upstream_of_or_within ISO (PMID:18216855) MGI PMID:18216855 NCBI chrNW_004955407:39,985,501...40,473,330
Ensembl chrNW_004955407:39,986,108...40,473,200 		JBrowse link
G Grk1 G protein-coupled receptor kinase 1 acts_upstream_of_or_within ISO (PMID:10097103) MGI PMID:10097103 NCBI chrNW_004955404:343,009...353,683
Ensembl chrNW_004955404:343,009...353,683 		JBrowse link
retina layer formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arl6 ADP ribosylation factor like GTPase 6 acts_upstream_of_or_within ISO (PMID:22139371)
(PMID:20333246)		 MGI PMID:20333246 PMID:22139371 NCBI chrNW_004955407:360,898...387,563
Ensembl chrNW_004955407:360,600...380,900 		JBrowse link
G Calb1 calbindin 1 involved_in ISO (MGI:1353814|PMID:10741426) UniProt PMID:10741426 MGI:1353814 NCBI chrNW_004955417:6,944,300...6,969,341
Ensembl chrNW_004955417:6,942,900...6,969,502 		JBrowse link
G Crb1 crumbs cell polarity complex component 1 acts_upstream_of_or_within ISO (PMID:17234588) MGI PMID:17234588 NCBI chrNW_004955406:33,817,754...34,005,937
Ensembl chrNW_004955406:33,817,605...34,005,943 		JBrowse link
G Fat3 FAT atypical cadherin 3 acts_upstream_of_or_within ISO (PMID:21903076) MGI PMID:21903076 NCBI chrNW_004955414:1,467,087...2,083,914
Ensembl chrNW_004955414:1,472,067...1,962,265 		JBrowse link
G Fjx1 four-jointed box kinase 1 acts_upstream_of_or_within ISO (PMID:21903076) MGI PMID:21903076 NCBI chrNW_004955422:10,731,004...10,733,522 JBrowse link
G Foxn4 forkhead box N4 involved_in ISO (MGI:3054139|PMID:15363391) UniProt PMID:15363391 MGI:3054139 NCBI chrNW_004955455:9,182,405...9,210,365
Ensembl chrNW_004955455:9,183,475...9,210,506 		JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 involved_in ISO (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chrNW_004955435:17,201,866...17,257,371
Ensembl chrNW_004955435:17,172,651...17,257,371 		JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 involved_in ISO (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chrNW_004955494:3,365,826...3,554,735
Ensembl chrNW_004955494:3,393,049...3,554,844 		JBrowse link
G Irx6 iroquois homeobox 6 acts_upstream_of_or_within ISO (PMID:23172916) MGI PMID:23172916 NCBI chrNW_004955433:12,889,025...12,895,090
Ensembl chrNW_004955433:12,889,001...12,895,121 		JBrowse link
G Large1 LARGE xylosyl- and glucuronyltransferase 1 acts_upstream_of_or_within ISO (PMID:16111892) MGI PMID:16111892 NCBI chrNW_004955405:41,891,430...42,225,066
Ensembl chrNW_004955405:41,931,058...42,139,608 		JBrowse link
G Lhx1 LIM homeobox 1 involved_in ISO (MGI:3772525|PMID:18094249)
(MGI:1353814|PMID:10741426)		 UniProt PMID:10741426 PMID:18094249 MGI:1353814 MGI:3772525 NCBI chrNW_004955451:1,037,936...1,048,501
Ensembl chrNW_004955451:1,037,825...1,048,501 		JBrowse link
G Megf11 multiple EGF like domains 11 involved_in ISO (MGI:5316136|PMID:22407321) UniProt PMID:22407321 MGI:5316136 NCBI chrNW_004955450:9,355,134...9,634,747
Ensembl chrNW_004955450:9,355,060...9,632,119 		JBrowse link
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within ISO (PMID:29654250) MGI PMID:29654250 NCBI chrNW_004955516:4,218,703...4,244,774
Ensembl chrNW_004955516:4,218,703...4,244,846 		JBrowse link
G Prom1 prominin 1 involved_in ISO (MGI:3838023|PMID:19228982) UniProt PMID:19228982 MGI:3838023 NCBI chrNW_004955480:7,955,501...8,059,537
Ensembl chrNW_004955480:7,961,389...8,059,589 		JBrowse link
G Ptf1a pancreas associated transcription factor 1a involved_in ISO (MGI:3691257|PMID:17075007) UniProt PMID:17075007 MGI:3691257 NCBI chrNW_004955429:5,807,804...5,809,522
Ensembl chrNW_004955429:5,808,124...5,809,522 		JBrowse link
G Ptprm protein tyrosine phosphatase receptor type M involved_in ISO (PMID:14623235) UniProt PMID:14623235 NCBI chrNW_004955402:3,243,447...3,756,457
Ensembl chrNW_004955402:3,244,222...3,756,925 		JBrowse link
G Rdh13 retinol dehydrogenase 13 acts_upstream_of_or_within ISO (PMID:22605914) MGI PMID:22605914 NCBI chrNW_004955567:1,091,636...1,108,648
Ensembl chrNW_004955567:1,091,636...1,108,732 		JBrowse link
G Sdk2 sidekick cell adhesion molecule 2 involved_in ISO (MGI:5693671|PMID:26287463) UniProt PMID:26287463 MGI:5693671 NCBI chrNW_004955553:353,190...614,806
Ensembl chrNW_004955553:357,112...614,811 		JBrowse link
G Slc1a1 solute carrier family 1 member 1 acts_upstream_of_or_within
involved_in		 ISO (PMID:19766171)
(PMID:29677370)		 MGI PMID:19766171 PMID:29677370 NCBI chrNW_004955434:8,790,685...8,879,757
Ensembl chrNW_004955434:8,790,685...8,879,757 		JBrowse link
G Tfap2a transcription factor AP-2 alpha involved_in ISO (PMID:20607706) UniProt PMID:20607706 NCBI chrNW_004955465:3,877,896...3,900,259
Ensembl chrNW_004955465:3,882,549...3,898,929 		JBrowse link
G Tfap2b transcription factor AP-2 beta involved_in ISO (PMID:20607706) UniProt PMID:20607706 NCBI chrNW_004955411:7,143,095...7,171,285
Ensembl chrNW_004955411:7,142,607...7,170,467 		JBrowse link
G Tspan12 tetraspanin 12 involved_in ISO (MGI:4410396|PMID:19837033) UniProt PMID:19837033 MGI:4410396 NCBI chrNW_004955479:2,570,937...2,636,884
Ensembl chrNW_004955479:2,570,937...2,635,857 		JBrowse link
retina morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bhlhe22 basic helix-loop-helix family member e22 acts_upstream_of_or_within ISO (PMID:17092954) MGI PMID:17092954 NCBI chrNW_004955444:14,458,307...14,460,441 JBrowse link
G Crb1 crumbs cell polarity complex component 1 acts_upstream_of_or_within
involved_in		 ISO (PMID:17234588), (PMID:25147295)
(PMID:12915475)		 MGI PMID:12915475 PMID:17234588 PMID:25147295 NCBI chrNW_004955406:33,817,754...34,005,937
Ensembl chrNW_004955406:33,817,605...34,005,943 		JBrowse link
G Dll1 delta like canonical Notch ligand 1 involved_in ISO (MGI:3848562|PMID:19389377) UniProt PMID:19389377 MGI:3848562 NCBI chrNW_004955411:3,478,943...3,486,541
Ensembl chrNW_004955411:3,478,033...3,486,604 		JBrowse link
G Impg2 interphotoreceptor matrix proteoglycan 2 acts_upstream_of_or_within ISO (PMID:32265257) MGI PMID:32265257 NCBI chrNW_004955427:2,825,940...2,919,282
Ensembl chrNW_004955427:2,826,457...2,919,282 		JBrowse link
G Lrp5 LDL receptor related protein 5 involved_in ISO (PMID:15346351) BHF-UCL PMID:15346351 NCBI chrNW_004955422:17,394,371...17,475,244
Ensembl chrNW_004955422:17,394,371...17,505,763 		JBrowse link
G Lrp6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (PMID:18985738) MGI PMID:18985738 NCBI chrNW_004955413:9,080,901...9,237,644
Ensembl chrNW_004955413:9,080,914...9,237,650 		JBrowse link
G Man2a1 mannosidase alpha class 2A member 1 acts_upstream_of_or_within ISO (PMID:20144606) MGI PMID:20144606 NCBI chrNW_004955418:5,027,962...5,191,346
Ensembl chrNW_004955418:5,027,174...5,191,346 		JBrowse link
G Mfsd2a MFSD2 lysolipid transporter A, lysophospholipid acts_upstream_of_or_within ISO (MGI:5789479|PMID:27008858) ARUK-UCL PMID:27008858 MGI:5789479 NCBI chrNW_004955452:17,430,850...17,443,830
Ensembl chrNW_004955452:17,430,219...17,443,830 		JBrowse link
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within ISO (PMID:15716406) MGI PMID:15716406 NCBI chrNW_004955516:4,218,703...4,244,774
Ensembl chrNW_004955516:4,218,703...4,244,846 		JBrowse link
G Nectin3 nectin cell adhesion molecule 3 acts_upstream_of_or_within ISO (PMID:15728677) MGI PMID:15728677 NCBI chrNW_004955427:11,639,942...11,731,910
Ensembl chrNW_004955427:11,606,909...11,724,004 		JBrowse link
G Prom1 prominin 1 involved_in ISO (PMID:18654668) BHF-UCL PMID:18654668 NCBI chrNW_004955480:7,955,501...8,059,537
Ensembl chrNW_004955480:7,961,389...8,059,589 		JBrowse link
G Ptf1a pancreas associated transcription factor 1a acts_upstream_of_or_within ISO (PMID:17301087) MGI PMID:17301087 NCBI chrNW_004955429:5,807,804...5,809,522
Ensembl chrNW_004955429:5,808,124...5,809,522 		JBrowse link
G Rom1 retinal outer segment membrane protein 1 acts_upstream_of_or_within ISO (PMID:20300562) MGI PMID:20300562 NCBI chrNW_004955599:578,165...580,055
Ensembl chrNW_004955599:573,426...579,812 		JBrowse link
G Rp1 RP1 axonemal microtubule associated acts_upstream_of_or_within ISO (PMID:21052544) MGI PMID:21052544 NCBI chrNW_004955454:13,781,556...14,082,310 JBrowse link
G Rpgr retinitis pigmentosa GTPase regulator acts_upstream_of_or_within ISO (PMID:10725384) MGI PMID:10725384 NCBI chrNW_004955601:398,772...453,271 JBrowse link
G Sox2 SRY-box transcription factor 2 acts_upstream_of_or_within ISO (PMID:16651659) MGI PMID:16651659 NCBI chrNW_004955420:10,671,888...10,674,080
Ensembl chrNW_004955420:10,671,978...10,672,934 		JBrowse link
G Vsx2 visual system homeobox 2 acts_upstream_of_or_within ISO (PMID:16854970), (PMID:8630490) MGI PMID:8630490 PMID:16854970 NCBI chrNW_004955523:1,192,035...1,207,949
Ensembl chrNW_004955523:1,193,686...1,210,641 		JBrowse link
retinal bipolar neuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bhlhe22 basic helix-loop-helix family member e22 acts_upstream_of_or_within ISO (PMID:17092954) MGI PMID:17092954 NCBI chrNW_004955444:14,458,307...14,460,441 JBrowse link
G Cabp4 calcium binding protein 4 acts_upstream_of_or_within ISO (PMID:16249514) MGI PMID:16249514 NCBI chrNW_004955422:18,023,639...18,028,845
Ensembl chrNW_004955422:18,023,639...18,028,845 		JBrowse link
G Casz1 castor zinc finger 1 acts_upstream_of_or_within ISO (PMID:24467707) MGI PMID:24467707 NCBI chrNW_004955486:2,923,239...2,975,835 JBrowse link
G Ikzf1 IKAROS family zinc finger 1 acts_upstream_of_or_within ISO (PMID:25654255) MGI PMID:25654255 NCBI chrNW_004955456:3,617,988...3,721,791
Ensembl chrNW_004955456:3,635,380...3,721,791 		JBrowse link
G Irx5 iroquois homeobox 5 acts_upstream_of_or_within ISO (PMID:18322081) MGI PMID:18322081 NCBI chrNW_004955433:12,518,786...12,522,744
Ensembl chrNW_004955433:12,519,338...12,522,118 		JBrowse link
G Irx6 iroquois homeobox 6 acts_upstream_of_or_within ISO (PMID:23172916) MGI PMID:23172916 NCBI chrNW_004955433:12,889,025...12,895,090
Ensembl chrNW_004955433:12,889,001...12,895,121 		JBrowse link
G Prdm1 PR/SET domain 1 acts_upstream_of_or_within ISO (PMID:28199486) MGI PMID:28199486 NCBI chrNW_004955411:31,434,503...31,455,995
Ensembl chrNW_004955411:31,434,503...31,456,056 		JBrowse link
G Vsx1 visual system homeobox 1 acts_upstream_of_or_within ISO (PMID:15043821)
(PMID:14745032)
(PMID:18322081)		 MGI PMID:14745032 PMID:15043821 PMID:18322081 NCBI chrNW_004955415:31,174,155...31,180,718
Ensembl chrNW_004955415:31,175,452...31,180,655 		JBrowse link
G Vsx2 visual system homeobox 2 acts_upstream_of_or_within ISO (PMID:8630490) MGI PMID:8630490 NCBI chrNW_004955523:1,192,035...1,207,949
Ensembl chrNW_004955523:1,193,686...1,210,641 		JBrowse link
G Zhx2 zinc fingers and homeoboxes 2 involved_in ISO (MGI:6214404|PMID:30146259) UniProt PMID:30146259 MGI:6214404 NCBI chrNW_004955540:1,805,648...1,890,409
Ensembl chrNW_004955540:1,805,666...1,890,409 		JBrowse link
retinal cone cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 involved_in ISO (MGI:4437526|PMID:20081859) CACAO PMID:20081859 MGI:4437526 NCBI chrNW_004955439:1,277,185...1,460,296
Ensembl chrNW_004955439:1,276,760...1,474,202 		JBrowse link
G Cabp4 calcium binding protein 4 acts_upstream_of_or_within ISO (PMID:16249514) MGI PMID:16249514 NCBI chrNW_004955422:18,023,639...18,028,845
Ensembl chrNW_004955422:18,023,639...18,028,845 		JBrowse link
G Cnga3 cyclic nucleotide gated channel subunit alpha 3 acts_upstream_of_or_within ISO (PMID:21052544) MGI PMID:21052544 NCBI chrNW_004955470:4,884,054...4,907,151
Ensembl chrNW_004955470:4,884,309...4,906,902 		JBrowse link
G Crb2 crumbs cell polarity complex component 2 involved_in ISO (MGI:5461109|PMID:23001562) UniProt PMID:23001562 MGI:5461109 NCBI chrNW_004955419:4,604,883...4,626,675
Ensembl chrNW_004955419:4,607,507...4,626,608 		JBrowse link
G Dio3 iodothyronine deiodinase 3 acts_upstream_of
acts_upstream_of_or_within		 ISO (PMID:20203194) MGI PMID:20203194 NCBI chrNW_004955538:1,042,949...1,045,038 JBrowse link
G Gnat2 G protein subunit alpha transducin 2 acts_upstream_of_or_within ISO (PMID:17065522), (PMID:21052544) MGI PMID:17065522 PMID:21052544 NCBI chrNW_004955435:13,009,147...13,021,968
Ensembl chrNW_004955435:13,009,147...13,021,968 		JBrowse link
G Hcn1 hyperpolarization activated cyclic nucleotide gated potassium channel 1 acts_upstream_of_or_within ISO (PMID:21052544) MGI PMID:21052544 NCBI chrNW_004955446:17,146,915...17,457,843
Ensembl chrNW_004955446:17,151,311...17,457,888 		JBrowse link
G Pde6c phosphodiesterase 6C acts_upstream_of_or_within ISO (PMID:21052544) MGI PMID:21052544 NCBI chrNW_004955507:129,678...179,586
Ensembl chrNW_004955507:129,678...179,305 		JBrowse link
G Rorb RAR related orphan receptor B involved_in ISO (MGI:3652638|PMID:16574740) UniProt PMID:16574740 MGI:3652638 NCBI chrNW_004955512:4,362,287...4,541,432
Ensembl chrNW_004955512:4,362,287...4,541,445 		JBrowse link
G Rp1 RP1 axonemal microtubule associated involved_in ISO (MGI:2676521|PMID:14507858) UniProt PMID:14507858 MGI:2676521 NCBI chrNW_004955454:13,781,556...14,082,310 JBrowse link
G Thrb thyroid hormone receptor beta acts_upstream_of ISO (PMID:20203194) MGI PMID:20203194 NCBI chrNW_004955430:15,992,146...16,322,696
Ensembl chrNW_004955430:15,992,146...16,323,238 		JBrowse link
G Thy1 Thy-1 cell surface antigen involved_in ISO (MGI:1349255|PMID:10567740) UniProt PMID:10567740 MGI:1349255 NCBI chrNW_004955412:20,480,284...20,484,958
Ensembl chrNW_004955412:20,480,284...20,484,958 		JBrowse link
retinal cone cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bbs10 Bardet-Biedl syndrome 10 acts_upstream_of_or_within ISO (PMID:36125046) MGI PMID:36125046 NCBI chrNW_004955405:15,571,458...15,574,568
Ensembl chrNW_004955405:15,571,073...15,574,791 		JBrowse link
G Gnat1 G protein subunit alpha transducin 1 acts_upstream_of_or_within ISO (PMID:19815523) MGI PMID:19815523 NCBI chrNW_004955532:2,018,850...2,023,603
Ensembl chrNW_004955532:2,018,850...2,023,603 		JBrowse link
G Gnat2 G protein subunit alpha transducin 2 acts_upstream_of_or_within ISO (PMID:19815523) MGI PMID:19815523 NCBI chrNW_004955435:13,009,147...13,021,968
Ensembl chrNW_004955435:13,009,147...13,021,968 		JBrowse link
G Notch1 notch receptor 1 acts_upstream_of ISO (PMID:16452096) MGI PMID:16452096 NCBI chrNW_004955513:4,225,939...4,264,875
Ensembl chrNW_004955513:4,225,956...4,263,259 		JBrowse link
retinal rod cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 involved_in ISO (MGI:4437526|PMID:20081859) CACAO PMID:20081859 MGI:4437526 NCBI chrNW_004955439:1,277,185...1,460,296
Ensembl chrNW_004955439:1,276,760...1,474,202 		JBrowse link
G Alms1 ALMS1 centrosome and basal body associated protein acts_upstream_of_or_within ISO (PMID:16000322) MGI PMID:16000322 NCBI chrNW_004955424:12,130,496...12,258,684
Ensembl chrNW_004955424:12,130,607...12,258,522 		JBrowse link
G Bbs4 Bardet-Biedl syndrome 4 acts_upstream_of_or_within ISO (PMID:15173597) MGI PMID:15173597 NCBI chrNW_004955450:4,624,634...4,668,470
Ensembl chrNW_004955450:4,631,266...4,662,719 		JBrowse link
G Bhlhe23 basic helix-loop-helix family member e23 acts_upstream_of_or_within ISO (PMID:17255172) MGI PMID:17255172 NCBI chrNW_004955528:1,094,234...1,094,674 JBrowse link
G Naglu N-acetyl-alpha-glucosaminidase acts_upstream_of_or_within ISO (PMID:17712420) MGI PMID:17712420 NCBI chrNW_004955451:16,445,338...16,449,243
Ensembl chrNW_004955451:16,445,338...16,450,062 		JBrowse link
G Nrl neural retina leucine zipper acts_upstream_of_or_within ISO (PMID:11694879) MGI PMID:11694879 NCBI chrNW_004955409:36,279,996...36,313,824
Ensembl chrNW_004955409:36,310,932...36,313,893 		JBrowse link
G Ntrk2 neurotrophic receptor tyrosine kinase 2 acts_upstream_of_or_within ISO (PMID:10516311) MGI PMID:10516311 NCBI chrNW_004955432:2,284,283...2,629,631
Ensembl chrNW_004955432:2,288,898...2,630,878 		JBrowse link
G Rorb RAR related orphan receptor B involved_in ISO (MGI:3652638|PMID:16574740), (MGI:4366105|PMID:19805139) UniProt PMID:16574740 PMID:19805139 MGI:3652638 MGI:4366105 NCBI chrNW_004955512:4,362,287...4,541,432
Ensembl chrNW_004955512:4,362,287...4,541,445 		JBrowse link
G Rp1 RP1 axonemal microtubule associated involved_in ISO (MGI:2676521|PMID:14507858) UniProt PMID:14507858 MGI:2676521 NCBI chrNW_004955454:13,781,556...14,082,310 JBrowse link
G Samd11 sterile alpha motif domain containing 11 involved_in ISO (MGI:6512737|PMID:33603070) UniProt PMID:33603070 MGI:6512737 NCBI chrNW_004955486:9,763,704...9,781,132
Ensembl chrNW_004955486:9,763,725...9,779,197 		JBrowse link
G Samd7 sterile alpha motif domain containing 7 involved_in ISO (MGI:6512737|PMID:33603070) UniProt PMID:33603070 MGI:6512737 NCBI chrNW_004955420:161,353...178,768
Ensembl chrNW_004955420:161,353...177,936 		JBrowse link
G Trpm1 transient receptor potential cation channel subfamily M member 1 acts_upstream_of_or_within ISO (PMID:19966281) MGI PMID:19966281 NCBI chrNW_004955416:29,846,374...29,880,922
Ensembl chrNW_004955416:29,814,077...29,939,344 		JBrowse link
retinal rod cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bbs10 Bardet-Biedl syndrome 10 acts_upstream_of_or_within ISO (PMID:36125046) MGI PMID:36125046 NCBI chrNW_004955405:15,571,458...15,574,568
Ensembl chrNW_004955405:15,571,073...15,574,791 		JBrowse link
G Cntf ciliary neurotrophic factor acts_upstream_of ISO (PMID:15207851) MGI PMID:15207851 NCBI chrNW_004955511:3,527,552...3,531,275
Ensembl chrNW_004955511:3,527,552...3,534,348 		JBrowse link
G Gnat1 G protein subunit alpha transducin 1 acts_upstream_of_or_within ISO (PMID:19815523) MGI PMID:19815523 NCBI chrNW_004955532:2,018,850...2,023,603
Ensembl chrNW_004955532:2,018,850...2,023,603 		JBrowse link
G Gnat2 G protein subunit alpha transducin 2 acts_upstream_of_or_within ISO (PMID:19815523) MGI PMID:19815523 NCBI chrNW_004955435:13,009,147...13,021,968
Ensembl chrNW_004955435:13,009,147...13,021,968 		JBrowse link
G Ndp norrin cystine knot growth factor NDP acts_upstream_of_or_within ISO (PMID:9071226) MGI PMID:9071226 NCBI chrNW_004955516:4,218,703...4,244,774
Ensembl chrNW_004955516:4,218,703...4,244,846 		JBrowse link
G Ptn pleiotrophin ISO RGD PMID:16914133 RGD:9831439 NCBI chrNW_004955494:5,580,264...5,681,848
Ensembl chrNW_004955494:5,580,422...5,684,190 		JBrowse link
G Rorb RAR related orphan receptor B acts_upstream_of_or_within ISO (PMID:25296752) MGI PMID:25296752 NCBI chrNW_004955512:4,362,287...4,541,432
Ensembl chrNW_004955512:4,362,287...4,541,445 		JBrowse link
G Sox8 SRY-box transcription factor 8 acts_upstream_of
acts_upstream_of_or_within		 ISO (PMID:19490914) MGI PMID:19490914 NCBI chrNW_004955442:16,236,286...16,241,093
Ensembl chrNW_004955442:16,236,232...16,241,152 		JBrowse link
G Sox9 SRY-box transcription factor 9 acts_upstream_of
acts_upstream_of_or_within		 ISO (PMID:19490914) MGI PMID:19490914 NCBI chrNW_004955478:941,684...945,563
Ensembl chrNW_004955478:940,177...945,563 		JBrowse link
G Stat3 signal transducer and activator of transcription 3 acts_upstream_of_or_within ISO (PMID:15207851) MGI PMID:15207851 NCBI chrNW_004955451:16,320,326...16,348,505
Ensembl chrNW_004955451:16,319,904...16,357,687 		JBrowse link
retinal rod cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Casz1 castor zinc finger 1 acts_upstream_of_or_within ISO (PMID:25654255) MGI PMID:25654255 NCBI chrNW_004955486:2,923,239...2,975,835 JBrowse link
rod bipolar cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Naglu N-acetyl-alpha-glucosaminidase acts_upstream_of_or_within ISO (PMID:26607664) MGI PMID:26607664 NCBI chrNW_004955451:16,445,338...16,449,243
Ensembl chrNW_004955451:16,445,338...16,450,062 		JBrowse link
G Ptn pleiotrophin ISO RGD PMID:16914133 RGD:9831439 NCBI chrNW_004955494:5,580,264...5,681,848
Ensembl chrNW_004955494:5,580,422...5,684,190 		JBrowse link
G Rho rhodopsin acts_upstream_of_or_within ISO (PMID:32960171) MGI PMID:32960171 NCBI chrNW_004955429:17,787,337...17,791,982
Ensembl chrNW_004955429:17,787,337...17,791,982 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12346
    developmental process 5853
      anatomical structure morphogenesis 2558
        animal organ morphogenesis 1053
          sensory organ morphogenesis 308
            eye morphogenesis 174
              camera-type eye morphogenesis 144
                cell motility involved in camera-type eye morphogenesis 0
                ciliary body morphogenesis 4
                embryonic camera-type eye morphogenesis + 29
                establishment of epithelial cell apical/basal polarity involved in camera-type eye morphogenesis 1
                iris morphogenesis 6
                lens morphogenesis in camera-type eye + 25
                post-embryonic camera-type eye morphogenesis 5
                retina morphogenesis in camera-type eye + 78
Path 2
Term Annotations click to browse term
  biological_process 12346
    developmental process 5853
      anatomical structure development 5540
        multicellular organism development 4550
          system development 3953
            sensory system development 438
              visual system development 432
                eye development 429
                  eye morphogenesis 174
                    camera-type eye morphogenesis 144
                      cell motility involved in camera-type eye morphogenesis 0
                      ciliary body morphogenesis 4
                      embryonic camera-type eye morphogenesis + 29
                      establishment of epithelial cell apical/basal polarity involved in camera-type eye morphogenesis 1
                      iris morphogenesis 6
                      lens morphogenesis in camera-type eye + 25
                      post-embryonic camera-type eye morphogenesis 5
                      retina morphogenesis in camera-type eye + 78
paths to the root