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ONTOLOGY REPORT - ANNOTATIONS


Term:camera-type eye morphogenesis
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Accession:GO:0048593 term browser browse the term
Definition:The process in which the anatomical structures of the eye are generated and organized. The camera-type eye is an organ of sight that receives light through an aperture and focuses it through a lens, projecting it on a photoreceptor field.
Synonyms:exact_synonym: camera-style eye morphogenesis
 alt_id: GO:0048594;   GO:0048595



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camera-type eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AQP1 aquaporin 1 (Colton blood group) acts_upstream_of_or_within ISO (MGI:2180433|PMID:11891232) MGI PMID:11891232 MGI:2180433 NCBI chr 7:31,524,933...31,538,602
Ensembl chr 7:31,644,331...31,658,141
JBrowse link
G AQP5 aquaporin 5 acts_upstream_of_or_within ISO (MGI:2180433|PMID:11891232) MGI PMID:11891232 MGI:2180433 NCBI chr12:38,789,505...38,793,305
Ensembl chr12:39,684,008...39,687,127
JBrowse link
G BMP4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO (MGI:1095762|PMID:9268572) MGI PMID:9268572 MGI:1095762 NCBI chr14:34,542,132...34,549,286
Ensembl chr14:52,821,872...52,828,752
JBrowse link
G BMP7 bone morphogenetic protein 7 acts_upstream_of_or_within ISO (MGI:3701027|PMID:16854970)
(MGI:3610441|PMID:16154126)
MGI PMID:16154126 PMID:16854970 MGI:3610441 MGI:3701027 NCBI chr20:53,509,484...53,606,889
Ensembl chr20:54,788,974...54,885,021
JBrowse link
G C12H12orf57 chromosome 12 C12orf57 homolog involved_in ISO (PMID:23453665), (PMID:23633300), (PMID:24798461) UniProt PMID:23453665 PMID:23633300 PMID:24798461 NCBI chr12:7,073,251...7,075,408
Ensembl chr12:6,978,576...6,990,580
JBrowse link
G COL8A1 collagen type VIII alpha 1 chain acts_upstream_of_or_within ISO (MGI:3587134|PMID:16051690) MGI PMID:16051690 MGI:3587134 NCBI chr 3:96,732,445...96,892,726
Ensembl chr 3:103,521,159...103,573,617
JBrowse link
G COL8A2 collagen type VIII alpha 2 chain acts_upstream_of_or_within ISO (MGI:3587134|PMID:16051690) MGI PMID:16051690 MGI:3587134 NCBI chr 1:35,361,336...35,391,173
Ensembl chr 1:36,537,869...36,540,541
JBrowse link
G EPHB1 EPH receptor B1 acts_upstream_of_or_within ISO (MGI:2675767|PMID:12971893) MGI PMID:12971893 MGI:2675767 NCBI chr 3:131,841,459...132,309,082
Ensembl chr 3:139,313,387...139,776,802
JBrowse link
G EPHB2 EPH receptor B2 acts_upstream_of_or_within ISO (MGI:2675767|PMID:12971893) MGI PMID:12971893 MGI:2675767 NCBI chr 1:21,895,961...22,107,649
Ensembl chr 1:22,912,570...23,047,118
JBrowse link
G FAT1 FAT atypical cadherin 1 involved_in ISO (MGI:5766588|PMID:26114487) MGI PMID:26114487 MGI:5766588 NCBI chr 4:178,752,261...178,895,038
Ensembl chr 4:190,952,737...191,093,357
JBrowse link
G GDF11 growth differentiation factor 11 acts_upstream_of_or_within ISO (MGI:3581514|PMID:15976303) MGI PMID:15976303 MGI:3581514 NCBI chr12:33,154,530...33,168,427
Ensembl chr12:33,879,180...33,893,252
JBrowse link
G GLI3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (MGI:52587|PMID:8387379) MGI PMID:8387379 MGI:52587 NCBI chr 7:42,004,965...42,280,772
Ensembl chr 7:42,056,565...42,322,865
JBrowse link
G HIF1A hypoxia inducible factor 1 subunit alpha acts_upstream_of_or_within ISO (MGI:5429122|PMID:22627278) MGI PMID:22627278 MGI:5429122 NCBI chr14:42,295,691...42,348,478
Ensembl chr14:60,552,374...60,604,885
JBrowse link
G LOC100990238 intraflagellar transport protein 122 homolog involved_in ISO (MGI:3827087|PMID:19000668) UniProt PMID:19000668 MGI:3827087 NCBI chr 3:126,498,018...126,578,211
Ensembl chr 3:133,851,433...133,930,117
JBrowse link
G MFN2 mitofusin 2 acts_upstream_of_or_within ISO (MGI:3589043|PMID:16104381) MGI PMID:16104381 MGI:3589043 NCBI chr 1:10,729,933...10,764,865
Ensembl chr 1:11,945,880...11,981,077
JBrowse link
G NECTIN1 nectin cell adhesion molecule 1 acts_upstream_of_or_within ISO (MGI:3604842|PMID:15728677) MGI PMID:15728677 MGI:3604842 NCBI chr11:114,497,177...114,565,338
Ensembl chr11:118,401,321...118,493,090
JBrowse link
G NF1 neurofibromin 1 acts_upstream_of_or_within ISO (MGI:66069|PMID:7926784) MGI PMID:7926784 MGI:66069 NCBI chr17:25,425,081...25,703,689
Ensembl chr17:26,160,855...26,439,295
JBrowse link
G RING1 ring finger protein 1 acts_upstream_of_or_within ISO (MGI:3628673|PMID:16624538) MGI PMID:16624538 MGI:3628673 NCBI chr 6:32,780,699...32,784,922
Ensembl chr 6:33,895,849...33,899,417
JBrowse link
G SKI SKI proto-oncogene acts_upstream_of_or_within ISO (MGI:3693412|PMID:17003410) MGI PMID:17003410 MGI:3693412 NCBI chr 1:944,428...1,029,695
Ensembl chr 1:2,091,620...2,174,080
JBrowse link
G TENM3 teneurin transmembrane protein 3 involved_in ISO (PMID:22766609) UniProt PMID:22766609 NCBI chr 4:173,644,674...174,993,218
Ensembl chr 4:186,738,624...187,214,394
JBrowse link
G VEGFA vascular endothelial growth factor A acts_upstream_of_or_within ISO (MGI:3607459|PMID:16251428) MGI PMID:16251428 MGI:3607459 NCBI chr 6:43,361,053...43,377,366
Ensembl chr 6:44,650,365...44,666,353
JBrowse link
G VHL von Hippel-Lindau tumor suppressor acts_upstream_of_or_within ISO (MGI:5429122|PMID:22627278) MGI PMID:22627278 MGI:5429122 NCBI chr 3:10,077,630...10,089,499
Ensembl chr 3:10,430,143...10,440,234
JBrowse link
G YY1 YY1 transcription factor acts_upstream_of_or_within ISO (MGI:3628673|PMID:16624538) MGI PMID:16624538 MGI:3628673 NCBI chr14:80,859,491...80,903,651 JBrowse link
camera-type eye photoreceptor cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PROM1 prominin 1 involved_in ISO (PMID:18654668)
(MGI:3838023|PMID:19228982)
BHF-UCL
UniProt
PMID:18654668 PMID:19228982 MGI:3838023 NCBI chr 4:10,405,299...10,519,518
Ensembl chr 4:15,702,159...15,815,454
JBrowse link
G ROM1 retinal outer segment membrane protein 1 acts_upstream_of_or_within ISO (MGI:4437581|PMID:20300562) MGI PMID:20300562 MGI:4437581 NCBI chr11:57,970,290...57,972,658
Ensembl chr11:61,324,900...61,327,278
JBrowse link
G SDK2 sidekick cell adhesion molecule 2 involved_in ISO (MGI:5693671|PMID:26287463) UniProt PMID:26287463 MGI:5693671 NCBI chr17:67,261,847...67,577,568
Ensembl chr17:72,823,709...73,133,952
JBrowse link
G SLC4A7 solute carrier family 4 member 7 acts_upstream_of_or_within ISO (MGI:2680888|PMID:12808454) MGI PMID:12808454 MGI:2680888 NCBI chr 3:27,261,155...27,373,223
Ensembl chr 3:27,591,639...27,670,815
JBrowse link
G TTC8 tetratricopeptide repeat domain 8 acts_upstream_of_or_within ISO (MGI:5014119|PMID:21646512) MGI PMID:21646512 MGI:5014119 NCBI chr14:69,446,355...69,502,351
Ensembl chr14:88,802,812...88,857,055
JBrowse link
camera-type eye photoreceptor cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IHH Indian hedgehog signaling molecule acts_upstream_of_or_within ISO (MGI:3807419|PMID:18582859) MGI PMID:18582859 MGI:3807419 NCBI chr2B:106,312,472...106,319,124
Ensembl chr2B:224,906,271...224,911,506
JBrowse link
ciliary body morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FOXE3 forkhead box E3 involved_in ISO (MGI:3703484|PMID:17064680) UniProt PMID:17064680 MGI:3703484 NCBI chr 1:46,710,791...46,712,771 JBrowse link
G JAG1 jagged canonical Notch ligand 1 acts_upstream_of_or_within ISO (MGI:5492288|PMID:23676271) MGI PMID:23676271 MGI:5492288 NCBI chr20:10,582,234...10,618,507
Ensembl chr20:10,582,094...10,618,383
JBrowse link
G NOTCH2 notch receptor 2 acts_upstream_of_or_within ISO (MGI:5492288|PMID:23676271) MGI PMID:23676271 MGI:5492288 NCBI chr 1:82,457,829...82,615,142
Ensembl chr 1:117,538,243...117,612,840
JBrowse link
G TSKU tsukushi, small leucine rich proteoglycan acts_upstream_of_or_within ISO (MGI:5285004|PMID:21856951) MGI PMID:21856951 MGI:5285004 NCBI chr11:71,833,654...71,848,509
Ensembl chr11:75,492,912...75,493,973
JBrowse link
G VHL von Hippel-Lindau tumor suppressor acts_upstream_of_or_within ISO (MGI:5429122|PMID:22627278) MGI PMID:22627278 MGI:5429122 NCBI chr 3:10,077,630...10,089,499
Ensembl chr 3:10,430,143...10,440,234
JBrowse link
closure of optic fissure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PHACTR4 phosphatase and actin regulator 4 involved_in ISO (MGI:3719969|PMID:17609112) UniProt PMID:17609112 MGI:3719969 NCBI chr 1:27,634,440...27,768,139
Ensembl chr 1:28,741,081...28,794,870
JBrowse link
G SOX11 SRY-box transcription factor 11 involved_in ISO (MGI:3797299|PMID:18423449) UniProt PMID:18423449 MGI:3797299 NCBI chr2A:5,699,738...5,711,210 JBrowse link
embryonic camera-type eye formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G STRA6 signaling receptor and transporter of retinol STRA6 involved_in ISO (PMID:17273977) DFLAT PMID:17273977 NCBI chr15:53,117,891...53,150,790
Ensembl chr15:72,741,482...72,770,876
JBrowse link
G TWIST1 twist family bHLH transcription factor 1 involved_in ISO (PMID:17070479) BHF-UCL PMID:17070479 NCBI chr 7:19,761,041...19,765,665 JBrowse link
embryonic camera-type eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP7 bone morphogenetic protein 7 acts_upstream_of_or_within ISO (MGI:1332362|PMID:10049573) MGI PMID:10049573 MGI:1332362 NCBI chr20:53,509,484...53,606,889
Ensembl chr20:54,788,974...54,885,021
JBrowse link
G CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 acts_upstream_of_or_within ISO (MGI:3807101|PMID:18653562) MGI PMID:18653562 MGI:3807101 NCBI chr 6:137,134,142...137,136,550 JBrowse link
G FOXF2 forkhead box F2 involved_in ISO (MGI:5297296|PMID:22022403) BHF-UCL PMID:22022403 MGI:5297296 NCBI chr 6:1,209,899...1,215,970 JBrowse link
G FZD5 frizzled class receptor 5 involved_in ISO (MGI:3826935|PMID:18832390) CACAO PMID:18832390 MGI:3826935 NCBI chr2B:95,003,246...95,010,577
Ensembl chr2B:213,133,017...213,134,774
JBrowse link
G HIPK1 homeodomain interacting protein kinase 1 involved_in ISO (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chr 1:88,579,603...88,627,988
Ensembl chr 1:123,633,134...123,677,714
JBrowse link
G HIPK2 homeodomain interacting protein kinase 2 involved_in ISO (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chr 7:131,506,711...131,722,943 JBrowse link
G IFT172 intraflagellar transport 172 acts_upstream_of_or_within ISO (MGI:6094959|PMID:28778798) MGI PMID:28778798 MGI:6094959 NCBI chr2A:27,448,139...27,492,302
Ensembl chr2A:27,536,534...27,580,406
JBrowse link
G IHH Indian hedgehog signaling molecule acts_upstream_of_or_within ISO (MGI:3807419|PMID:18582859) MGI PMID:18582859 MGI:3807419 NCBI chr2B:106,312,472...106,319,124
Ensembl chr2B:224,906,271...224,911,506
JBrowse link
G KDM2B lysine demethylase 2B involved_in ISO (MGI:4949568|PMID:21220025) BHF-UCL PMID:21220025 MGI:4949568 NCBI chr12:119,027,633...119,183,779
Ensembl chr12:122,401,296...122,555,246
JBrowse link
G LOC100990238 intraflagellar transport protein 122 homolog acts_upstream_of_or_within ISO (MGI:6094959|PMID:28778798) MGI PMID:28778798 MGI:6094959 NCBI chr 3:126,498,018...126,578,211
Ensembl chr 3:133,851,433...133,930,117
JBrowse link
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (MGI:4413396|PMID:19653321)
(MGI:3823171|PMID:18985738)
MGI PMID:18985738 PMID:19653321 MGI:3823171 MGI:4413396 NCBI chr12:12,121,411...12,288,590
Ensembl chr12:12,508,108...12,657,973
JBrowse link
G PAX6 paired box 6 acts_upstream_of_or_within ISO (MGI:3807101|PMID:18653562) MGI PMID:18653562 MGI:3807101 NCBI chr11:31,753,190...31,782,225
Ensembl chr11:31,641,813...31,664,474
JBrowse link
G SP1 Sp1 transcription factor acts_upstream_of_or_within ISO (MGI:3717030|PMID:17584888) MGI PMID:17584888 MGI:3717030 NCBI chr12:35,338,492...35,374,462
Ensembl chr12:36,127,681...36,158,356
JBrowse link
G SP3 Sp3 transcription factor acts_upstream_of_or_within ISO (MGI:3717030|PMID:17584888) MGI PMID:17584888 MGI:3717030 NCBI chr2B:61,185,975...61,243,155
Ensembl chr2B:178,639,677...178,692,848
JBrowse link
G TBX2 T-box transcription factor 2 involved_in ISO (MGI:3487212|PMID:15459098) BHF-UCL PMID:15459098 MGI:3487212 NCBI chr17:55,501,932...55,511,537
Ensembl chr17:60,622,098...60,630,189
JBrowse link
G TFAP2A transcription factor AP-2 alpha acts_upstream_of_or_within ISO (MGI:1313057|PMID:9811866) MGI PMID:9811866 MGI:1313057 NCBI chr 6:10,237,834...10,260,843 JBrowse link
G TH tyrosine hydroxylase involved_in ISO (MGI:3617102|PMID:16445854) BHF-UCL PMID:16445854 MGI:3617102 NCBI chr11:2,204,820...2,212,750
Ensembl chr11:2,231,248...2,242,433
JBrowse link
G ZEB1 zinc finger E-box binding homeobox 1 acts_upstream_of_or_within ISO (MGI:3790562|PMID:18436818) MGI PMID:18436818 MGI:3790562 NCBI chr10:31,449,202...31,659,534
Ensembl chr10:32,046,491...32,253,550
JBrowse link
embryonic retina morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDON cell adhesion associated, oncogene regulated acts_upstream_of_or_within ISO (MGI:4422144|PMID:19754878) MGI PMID:19754878 MGI:4422144 NCBI chr11:120,772,160...120,877,529
Ensembl chr11:124,685,084...124,786,091
JBrowse link
G HIPK1 homeodomain interacting protein kinase 1 involved_in ISO (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chr 1:88,579,603...88,627,988
Ensembl chr 1:123,633,134...123,677,714
JBrowse link
G HIPK2 homeodomain interacting protein kinase 2 involved_in ISO (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chr 7:131,506,711...131,722,943 JBrowse link
G LHX1 LIM homeobox 1 involved_in ISO (MGI:3772525|PMID:18094249) UniProt PMID:18094249 MGI:3772525 NCBI chr17:20,134,308...20,140,652
Ensembl chr17:20,430,618...20,437,751
JBrowse link
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (MGI:4413396|PMID:19653321) MGI PMID:19653321 MGI:4413396 NCBI chr12:12,121,411...12,288,590
Ensembl chr12:12,508,108...12,657,973
JBrowse link
G PROX1 prospero homeobox 1 involved_in
acts_upstream_of_or_within
ISO (PMID:12692551) BHF-UCL PMID:12692551 NCBI chr 1:189,556,124...189,609,297
Ensembl chr 1:194,412,980...194,460,763
JBrowse link
G RBP4 retinol binding protein 4 involved_in ISO (MGI:1344892|PMID:10469643) BHF-UCL PMID:10469643 MGI:1344892 NCBI chr10:90,337,879...90,347,530
Ensembl chr10:93,848,166...93,857,887
JBrowse link
establishment of epithelial cell apical/basal polarity involved in camera-type eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FAT1 FAT atypical cadherin 1 involved_in ISO (MGI:5766588|PMID:26114487) MGI PMID:26114487 MGI:5766588 NCBI chr 4:178,752,261...178,895,038
Ensembl chr 4:190,952,737...191,093,357
JBrowse link
horizontal cell localization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LHX1 LIM homeobox 1 involved_in ISO (MGI:3772525|PMID:18094249) UniProt PMID:18094249 MGI:3772525 NCBI chr17:20,134,308...20,140,652
Ensembl chr17:20,430,618...20,437,751
JBrowse link
iris morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FOXE3 forkhead box E3 involved_in ISO (MGI:3703484|PMID:17064680) UniProt PMID:17064680 MGI:3703484 NCBI chr 1:46,710,791...46,712,771 JBrowse link
G HIF1A hypoxia inducible factor 1 subunit alpha acts_upstream_of_or_within ISO (MGI:5429122|PMID:22627278) MGI PMID:22627278 MGI:5429122 NCBI chr14:42,295,691...42,348,478
Ensembl chr14:60,552,374...60,604,885
JBrowse link
G HIPK1 homeodomain interacting protein kinase 1 involved_in ISO (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chr 1:88,579,603...88,627,988
Ensembl chr 1:123,633,134...123,677,714
JBrowse link
G HIPK2 homeodomain interacting protein kinase 2 involved_in ISO (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chr 7:131,506,711...131,722,943 JBrowse link
G PAX6 paired box 6 involved_in ISO (PMID:7550230) DFLAT PMID:7550230 NCBI chr11:31,753,190...31,782,225
Ensembl chr11:31,641,813...31,664,474
JBrowse link
G PITX2 paired like homeodomain 2 involved_in ISO (PMID:9437321) BHF-UCL PMID:9437321 NCBI chr 4:103,112,624...103,137,356 JBrowse link
G VHL von Hippel-Lindau tumor suppressor acts_upstream_of_or_within ISO (MGI:5429122|PMID:22627278) MGI PMID:22627278 MGI:5429122 NCBI chr 3:10,077,630...10,089,499
Ensembl chr 3:10,430,143...10,440,234
JBrowse link
lens fiber cell morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ABI2 abl interactor 2 involved_in ISO (MGI:3525751|PMID:15572692) UniProt PMID:15572692 MGI:3525751 NCBI chr2B:90,561,708...90,663,072
Ensembl chr2B:208,702,092...208,797,499
JBrowse link
G ATF4 activating transcription factor 4 involved_in ISO (MGI:1339872|PMID:10096021), (MGI:1859108|PMID:10885750), (MGI:2158533|PMID:11806972) UniProt PMID:10096021 PMID:10885750 PMID:11806972 MGI:1339872 MGI:1859108 MGI:2158533 NCBI chr22:20,426,743...20,428,892
Ensembl chr22:38,248,094...38,249,249
JBrowse link
G CRYGB crystallin gamma B acts_upstream_of_or_within ISO (MGI:3691890|PMID:12426373), (MGI:81294|PMID:8626090) MGI PMID:8626090 PMID:12426373 MGI:3691890 MGI:81294 NCBI chr2B:95,373,199...95,378,131
Ensembl chr2B:213,497,286...213,500,951
JBrowse link
G EPHA2 EPH receptor A2 involved_in ISO (MGI:3831440|PMID:18948590) UniProt PMID:18948590 MGI:3831440 NCBI chr 1:15,259,915...15,292,983
Ensembl chr 1:16,253,513...16,284,787
JBrowse link
G PROX1 prospero homeobox 1 involved_in ISO (PMID:11850194)
(MGI:1332720|PMID:10080188)
BHF-UCL PMID:10080188 PMID:11850194 MGI:1332720 NCBI chr 1:189,556,124...189,609,297
Ensembl chr 1:194,412,980...194,460,763
JBrowse link
G TBC1D20 TBC1 domain family member 20 acts_upstream_of_or_within ISO (MGI:5551670|PMID:24239381) MGI PMID:24239381 MGI:5551670 NCBI chr20:644,646...670,860
Ensembl chr20:414,066...431,032
JBrowse link
lens induction in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO (MGI:1316914|PMID:9851982) MGI PMID:9851982 MGI:1316914 NCBI chr14:34,542,132...34,549,286
Ensembl chr14:52,821,872...52,828,752
JBrowse link
G HIPK1 homeodomain interacting protein kinase 1 involved_in ISO (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chr 1:88,579,603...88,627,988
Ensembl chr 1:123,633,134...123,677,714
JBrowse link
G HIPK2 homeodomain interacting protein kinase 2 involved_in ISO (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chr 7:131,506,711...131,722,943 JBrowse link
G POU2F1 POU class 2 homeobox 1 acts_upstream_of_or_within ISO (MGI:3701404|PMID:17140559) MGI PMID:17140559 MGI:3701404 NCBI chr 1:142,653,296...142,860,572
Ensembl chr 1:146,439,581...146,633,921
JBrowse link
G SIX3 SIX homeobox 3 acts_upstream_of_or_within ISO (MGI:3692850|PMID:17066077) MGI PMID:17066077 MGI:3692850 NCBI chr2A:45,038,634...45,072,867 JBrowse link
G SOX2 SRY-box transcription factor 2 acts_upstream_of_or_within ISO (MGI:3701404|PMID:17140559) MGI PMID:17140559 MGI:3701404 NCBI chr 3:178,744,881...178,747,392
Ensembl chr 3:186,922,705...186,923,662
JBrowse link
G TFAP2A transcription factor AP-2 alpha acts_upstream_of_or_within ISO (MGI:1347707|PMID:10571739) MGI PMID:10571739 MGI:1347707 NCBI chr 6:10,237,834...10,260,843 JBrowse link
lens morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BCAR3 BCAR3 adaptor protein, NSP family member acts_upstream_of_or_within ISO (MGI:4358852|PMID:19365570) MGI PMID:19365570 MGI:4358852 NCBI chr 1:96,230,498...96,508,028
Ensembl chr 1:94,960,966...95,080,565
JBrowse link
G CITED2 Cbp/p300 interacting transactivator with Glu/Asp rich carboxy-terminal domain 2 acts_upstream_of_or_within ISO (MGI:3807101|PMID:18653562) MGI PMID:18653562 MGI:3807101 NCBI chr 6:137,134,142...137,136,550 JBrowse link
G CTNNB1 catenin beta 1 acts_upstream_of_or_within ISO (MGI:3603687|PMID:16102745) MGI PMID:16102745 MGI:3603687 NCBI chr 3:41,104,940...41,145,934
Ensembl chr 3:41,373,726...41,414,030
JBrowse link
G FGFR3 fibroblast growth factor receptor 3 acts_upstream_of_or_within ISO (MGI:1933072|PMID:11290300) MGI PMID:11290300 MGI:1933072 NCBI chr 4:1,933,172...1,948,742
Ensembl chr 4:1,843,774...1,861,692
JBrowse link
G LCTL lactase like involved_in ISO (MGI:6274960|PMID:29425878) UniProt PMID:29425878 MGI:6274960 NCBI chr15:45,495,650...45,514,096
Ensembl chr15:63,769,946...63,787,409
JBrowse link
G MEIS1 Meis homeobox 1 acts_upstream_of_or_within ISO (MGI:3028436|PMID:14713950) MGI PMID:14713950 MGI:3028436 NCBI chr2A:66,494,934...66,633,295
Ensembl chr2A:67,615,941...67,752,958
JBrowse link
G NECTIN1 nectin cell adhesion molecule 1 acts_upstream_of_or_within ISO (MGI:3604842|PMID:15728677) MGI PMID:15728677 MGI:3604842 NCBI chr11:114,497,177...114,565,338
Ensembl chr11:118,401,321...118,493,090
JBrowse link
G NECTIN3 nectin cell adhesion molecule 3 acts_upstream_of_or_within ISO (MGI:3604842|PMID:15728677) MGI PMID:15728677 MGI:3604842 NCBI chr 3:108,223,380...108,354,079
Ensembl chr 3:115,148,481...115,270,507
JBrowse link
G PITX3 paired like homeodomain 3 involved_in ISO (MGI:4353482|PMID:19334279) UniProt PMID:19334279 MGI:4353482 NCBI chr10:98,833,330...98,846,292 JBrowse link
G PROX1 prospero homeobox 1 involved_in ISO (MGI:1332720|PMID:10080188) BHF-UCL PMID:10080188 MGI:1332720 NCBI chr 1:189,556,124...189,609,297
Ensembl chr 1:194,412,980...194,460,763
JBrowse link
G SKI SKI proto-oncogene acts_upstream_of_or_within ISO (MGI:3693412|PMID:17003410) MGI PMID:17003410 MGI:3693412 NCBI chr 1:944,428...1,029,695
Ensembl chr 1:2,091,620...2,174,080
JBrowse link
G SOX1 SRY-box transcription factor 1 acts_upstream_of_or_within ISO (MGI:1201714|PMID:9512512) MGI PMID:9512512 MGI:1201714 NCBI chr13:93,023,958...93,269,467 JBrowse link
G SOX11 SRY-box transcription factor 11 involved_in ISO (MGI:3797299|PMID:18423449) UniProt PMID:18423449 MGI:3797299 NCBI chr2A:5,699,738...5,711,210 JBrowse link
G TDRD7 tudor domain containing 7 involved_in ISO (PMID:21436445)
(MGI:4943339|PMID:21436445)
UniProt PMID:21436445 MGI:4943339 NCBI chr 9:68,502,761...68,586,633
Ensembl chr 9:96,640,789...96,708,145
JBrowse link
G TFAP2A transcription factor AP-2 alpha acts_upstream_of_or_within ISO (MGI:1329246|PMID:9918694), (MGI:3774683|PMID:18224708) MGI PMID:9918694 PMID:18224708 MGI:1329246 MGI:3774683 NCBI chr 6:10,237,834...10,260,843 JBrowse link
lens placode formation involved in camera-type eye formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FRS2 fibroblast growth factor receptor substrate 2 acts_upstream_of_or_within ISO (MGI:3513737|PMID:15569927) MGI PMID:15569927 MGI:3513737 NCBI chr12:66,992,207...67,107,313
Ensembl chr12:69,829,435...69,878,293
JBrowse link
G PROX1 prospero homeobox 1 acts_upstream_of_or_within ISO (PMID:11850194) BHF-UCL PMID:11850194 NCBI chr 1:189,556,124...189,609,297
Ensembl chr 1:194,412,980...194,460,763
JBrowse link
negative regulation of retinal cone cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CASZ1 castor zinc finger 1 acts_upstream_of_or_within ISO (MGI:5629913|PMID:25654255) MGI PMID:25654255 MGI:5629913 NCBI chr 1:9,396,936...9,557,100
Ensembl chr 1:10,622,519...10,677,091
JBrowse link
optic cup formation involved in camera-type eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARID1A AT-rich interaction domain 1A acts_upstream_of_or_within ISO (MGI:5466629|PMID:23129809) MGI PMID:23129809 MGI:5466629 NCBI chr 1:25,960,868...26,047,057
Ensembl chr 1:27,018,616...27,103,239
JBrowse link
optic cup morphogenesis involved in camera-type eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A1 aldehyde dehydrogenase 1 family member A1 acts_upstream_of_or_within ISO (MGI:3624188|PMID:16611695) MGI PMID:16611695 MGI:3624188 NCBI chr 9:51,737,305...51,916,648
Ensembl chr 9:71,680,890...71,814,085
JBrowse link
G ALDH1A3 aldehyde dehydrogenase 1 family member A3 acts_upstream_of_or_within ISO (MGI:3624188|PMID:16611695) MGI PMID:16611695 MGI:3624188 NCBI chr15:79,603,893...79,640,866
Ensembl chr15:98,891,770...98,928,396
JBrowse link
G PAX2 paired box 2 involved_in ISO (MGI:84247|PMID:8951055) DFLAT PMID:8951055 MGI:84247 NCBI chr10:97,344,978...97,429,086
Ensembl chr10:100,822,676...100,904,028
JBrowse link
optic cup structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TFAP2A transcription factor AP-2 alpha involved_in ISO (MGI:4439459|PMID:20150232) UniProt PMID:20150232 MGI:4439459 NCBI chr 6:10,237,834...10,260,843 JBrowse link
optic vesicle morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SIX3 SIX homeobox 3 involved_in ISO (MGI:2136715|PMID:11458394) UniProt PMID:11458394 MGI:2136715 NCBI chr2A:45,038,634...45,072,867 JBrowse link
G TFAP2A transcription factor AP-2 alpha involved_in ISO (MGI:4439459|PMID:20150232) UniProt PMID:20150232 MGI:4439459 NCBI chr 6:10,237,834...10,260,843 JBrowse link
post-embryonic camera-type eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BAK1 BCL2 antagonist/killer 1 acts_upstream_of_or_within ISO (MGI:3692135|PMID:15955981) MGI PMID:15955981 MGI:3692135 NCBI chr 6:33,146,998...33,154,755
Ensembl chr 6:34,255,769...34,263,211
JBrowse link
G BAX BCL2 associated X, apoptosis regulator acts_upstream_of_or_within ISO (MGI:3692135|PMID:15955981) MGI PMID:15955981 MGI:3692135 NCBI chr19:45,955,926...45,962,870
Ensembl chr19:54,793,594...54,800,468
JBrowse link
G FLT1 fms related receptor tyrosine kinase 1 acts_upstream_of_or_within ISO (MGI:5318610|PMID:22426483) MGI PMID:22426483 MGI:5318610 NCBI chr13:9,584,850...9,779,542 JBrowse link
G HMGN1 high mobility group nucleosome binding domain 1 acts_upstream_of_or_within ISO (MGI:3614611|PMID:16466397) MGI PMID:16466397 MGI:3614611 NCBI chr21:25,695,582...25,702,689 JBrowse link
G KDR kinase insert domain receptor acts_upstream_of_or_within ISO (MGI:5318610|PMID:22426483) MGI PMID:22426483 MGI:5318610 NCBI chr 4:68,813,894...68,861,018
Ensembl chr 4:75,377,375...75,427,109
JBrowse link
post-embryonic retina morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCDC66 coiled-coil domain containing 66 acts_upstream_of_or_within ISO (MGI:5141557|PMID:21680557) MGI PMID:21680557 MGI:5141557 NCBI chr 3:56,504,388...56,557,617
Ensembl chr 3:57,720,490...57,773,326
JBrowse link
G CRB1 crumbs cell polarity complex component 1 acts_upstream_of_or_within
involved_in
ISO (MGI:3051713|PMID:15316081), (MGI:3690408|PMID:16885194)
(MGI:2675211|PMID:12915475)
MGI PMID:12915475 PMID:15316081 PMID:16885194 MGI:2675211 MGI:3051713 MGI:3690408 NCBI chr 1:172,794,523...173,076,045
Ensembl chr 1:177,174,431...177,422,867
JBrowse link
G DSCAM DS cell adhesion molecule acts_upstream_of_or_within ISO (MGI:3768917|PMID:18216855) MGI PMID:18216855 MGI:3768917 NCBI chr21:26,366,295...27,192,617
Ensembl chr21:39,699,077...40,524,164
JBrowse link
G GRK1 G protein-coupled receptor kinase 1 acts_upstream_of_or_within ISO (MGI:1334014|PMID:10097103) MGI PMID:10097103 MGI:1334014 NCBI chr13:94,816,045...94,838,509
Ensembl chr13:113,867,002...113,885,610
JBrowse link
retina layer formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHI1 Abelson helper integration site 1 involved_in ISO (MGI:5306539|PMID:21959375) UniProt PMID:21959375 MGI:5306539 NCBI chr 6:133,055,026...133,273,591
Ensembl chr 6:137,156,237...137,361,232
JBrowse link
G ARL6 ADP ribosylation factor like GTPase 6 acts_upstream_of_or_within ISO (MGI:5306530|PMID:22139371)
(MGI:4442100|PMID:20333246)
MGI PMID:20333246 PMID:22139371 MGI:4442100 MGI:5306530 NCBI chr 3:94,832,577...94,870,531
Ensembl chr 3:101,519,718...101,556,419
JBrowse link
G CALB1 calbindin 1 acts_upstream_of_or_within ISO (PMID:10741426) UniProt PMID:10741426 NCBI chr 8:86,747,702...86,771,995
Ensembl chr 8:88,699,532...88,723,814
JBrowse link
G CRB1 crumbs cell polarity complex component 1 acts_upstream_of_or_within ISO (MGI:3696487|PMID:17234588) MGI PMID:17234588 MGI:3696487 NCBI chr 1:172,794,523...173,076,045
Ensembl chr 1:177,174,431...177,422,867
JBrowse link
G FAT3 FAT atypical cadherin 3 acts_upstream_of_or_within ISO (MGI:5292419|PMID:21903076) MGI PMID:21903076 MGI:5292419 NCBI chr11:87,242,937...87,921,955 JBrowse link
G FJX1 four-jointed box kinase 1 acts_upstream_of_or_within ISO (MGI:5292419|PMID:21903076) MGI PMID:21903076 MGI:5292419 NCBI chr11:35,588,579...35,592,107 JBrowse link
G FOXN4 forkhead box N4 involved_in ISO (MGI:3054139|PMID:15363391) UniProt PMID:15363391 MGI:3054139 NCBI chr12:106,855,308...106,886,508
Ensembl chr12:110,251,449...110,280,025
JBrowse link
G HIPK1 homeodomain interacting protein kinase 1 involved_in ISO (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chr 1:88,579,603...88,627,988
Ensembl chr 1:123,633,134...123,677,714
JBrowse link
G HIPK2 homeodomain interacting protein kinase 2 involved_in ISO (MGI:4818711|PMID:20579985) DFLAT PMID:20579985 MGI:4818711 NCBI chr 7:131,506,711...131,722,943 JBrowse link
G IRX6 iroquois homeobox 6 acts_upstream_of_or_within ISO (MGI:5447580|PMID:23172916) MGI PMID:23172916 MGI:5447580 NCBI chr16:35,556,558...35,563,568
Ensembl chr16:54,662,732...54,669,745
JBrowse link
G LHX1 LIM homeobox 1 involved_in
acts_upstream_of_or_within
ISO (MGI:3772525|PMID:18094249)
(PMID:10741426)
UniProt PMID:10741426 PMID:18094249 MGI:3772525 NCBI chr17:20,134,308...20,140,652
Ensembl chr17:20,430,618...20,437,751
JBrowse link
G MEGF11 multiple EGF like domains 11 involved_in ISO (MGI:5316136|PMID:22407321) UniProt PMID:22407321 MGI:5316136 NCBI chr15:44,836,750...45,208,674
Ensembl chr15:63,116,564...63,204,508
JBrowse link
G PROM1 prominin 1 involved_in ISO (MGI:3838023|PMID:19228982) UniProt PMID:19228982 MGI:3838023 NCBI chr 4:10,405,299...10,519,518
Ensembl chr 4:15,702,159...15,815,454
JBrowse link
G PTF1A pancreas associated transcription factor 1a involved_in ISO (MGI:3691257|PMID:17075007) UniProt PMID:17075007 MGI:3691257 NCBI chr10:23,356,165...23,359,579 JBrowse link
G PTPRM protein tyrosine phosphatase receptor type M involved_in ISO (PMID:14623235) UniProt PMID:14623235 NCBI chr18:5,879,556...6,706,824
Ensembl chr18:8,206,677...9,030,286
JBrowse link
G RDH13 retinol dehydrogenase 13 acts_upstream_of_or_within ISO (MGI:5462166|PMID:22605914) MGI PMID:22605914 MGI:5462166 NCBI chr19:52,081,674...52,107,781
Ensembl chr19:60,776,114...60,794,267
JBrowse link
G RS1 retinoschisin 1 acts_upstream_of_or_within ISO (MGI:2179152|PMID:11983912)
(MGI:3055638|PMID:15326152)
MGI PMID:11983912 PMID:15326152 MGI:2179152 MGI:3055638 NCBI chr  X:11,259,222...11,282,289
Ensembl chr  X:18,624,687...18,657,315
JBrowse link
G SDK2 sidekick cell adhesion molecule 2 involved_in ISO (MGI:5693671|PMID:26287463) UniProt PMID:26287463 MGI:5693671 NCBI chr17:67,261,847...67,577,568
Ensembl chr17:72,823,709...73,133,952
JBrowse link
G SLC1A1 solute carrier family 1 member 1 involved_in
acts_upstream_of_or_within
ISO (MGI:6155272|PMID:29677370)
(MGI:4414613|PMID:19766171)
MGI PMID:19766171 PMID:29677370 MGI:4414613 MGI:6155272 NCBI chr 9:4,323,124...4,420,193
Ensembl chr 9:4,511,491...4,608,337
JBrowse link
G TFAP2A transcription factor AP-2 alpha involved_in ISO (PMID:20607706) UniProt PMID:20607706 NCBI chr 6:10,237,834...10,260,843 JBrowse link
G TFAP2B transcription factor AP-2 beta involved_in ISO (PMID:20607706) UniProt PMID:20607706 NCBI chr 6:50,376,157...50,406,740
Ensembl chr 6:51,635,899...51,664,691
JBrowse link
G TSPAN12 tetraspanin 12 involved_in ISO (MGI:4410396|PMID:19837033) UniProt PMID:19837033 MGI:4410396 NCBI chr 7:112,790,606...112,861,730
Ensembl chr 7:125,478,472...125,549,091
JBrowse link
retina morphogenesis in camera-type eye term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BHLHE22 basic helix-loop-helix family member e22 acts_upstream_of_or_within ISO (MGI:3703109|PMID:17092954) MGI PMID:17092954 MGI:3703109 NCBI chr 8:61,119,561...61,122,827 JBrowse link
G CRB1 crumbs cell polarity complex component 1 involved_in
acts_upstream_of_or_within
ISO (MGI:2675211|PMID:12915475)
(MGI:3696487|PMID:17234588), (MGI:5608935|PMID:25147295)
MGI PMID:12915475 PMID:17234588 PMID:25147295 MGI:2675211 MGI:3696487 MGI:5608935 NCBI chr 1:172,794,523...173,076,045
Ensembl chr 1:177,174,431...177,422,867
JBrowse link
G DLL1 delta like canonical Notch ligand 1 involved_in ISO (MGI:3848562|PMID:19389377) UniProt PMID:19389377 MGI:3848562 NCBI chr 6:168,440,192...168,449,071
Ensembl chr 6:173,534,292...173,544,759
JBrowse link
G IMPG2 interphotoreceptor matrix proteoglycan 2 acts_upstream_of_or_within ISO (MGI:6423642|PMID:32265257) MGI PMID:32265257 MGI:6423642 NCBI chr 3:98,325,379...98,418,344
Ensembl chr 3:105,005,553...105,097,902
JBrowse link
G LRP5 LDL receptor related protein 5 involved_in ISO (PMID:15346351) BHF-UCL PMID:15346351 NCBI chr11:63,396,511...63,534,471
Ensembl chr11:66,735,246...66,839,817
JBrowse link
G LRP6 LDL receptor related protein 6 acts_upstream_of_or_within ISO (MGI:3823171|PMID:18985738) MGI PMID:18985738 MGI:3823171 NCBI chr12:12,121,411...12,288,590
Ensembl chr12:12,508,108...12,657,973
JBrowse link
G MAN2A1 mannosidase alpha class 2A member 1 acts_upstream_of_or_within ISO (MGI:4453938|PMID:20144606) MGI PMID:20144606 MGI:4453938 NCBI chr 5:105,034,104...105,219,011
Ensembl chr 5:110,841,349...111,025,187
JBrowse link
G MFSD2A major facilitator superfamily domain containing 2A acts_upstream_of_or_within ISO (MGI:5789479|PMID:27008858) ARUK-UCL PMID:27008858 MGI:5789479 NCBI chr 1:39,244,438...39,259,156
Ensembl chr 1:40,569,706...40,584,438
JBrowse link
G NECTIN3 nectin cell adhesion molecule 3 acts_upstream_of_or_within ISO (MGI:3604842|PMID:15728677) MGI PMID:15728677 MGI:3604842 NCBI chr 3:108,223,380...108,354,079
Ensembl chr 3:115,148,481...115,270,507
JBrowse link
G PROM1 prominin 1 involved_in ISO (PMID:18654668) BHF-UCL PMID:18654668 NCBI chr 4:10,405,299...10,519,518
Ensembl chr 4:15,702,159...15,815,454
JBrowse link
G PTF1A pancreas associated transcription factor 1a acts_upstream_of_or_within ISO (MGI:3701413|PMID:17301087) MGI PMID:17301087 MGI:3701413 NCBI chr10:23,356,165...23,359,579 JBrowse link
G ROM1 retinal outer segment membrane protein 1 acts_upstream_of_or_within ISO (MGI:4437581|PMID:20300562) MGI PMID:20300562 MGI:4437581 NCBI chr11:57,970,290...57,972,658
Ensembl chr11:61,324,900...61,327,278
JBrowse link
G RP1 RP1 axonemal microtubule associated acts_upstream_of_or_within ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chr 8:50,979,412...51,311,431
Ensembl chr 8:48,419,033...48,583,879
Ensembl chr 8:48,419,033...48,583,879
JBrowse link
G RPE65 retinoid isomerohydrolase RPE65 acts_upstream_of_or_within ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chr 1:67,666,784...67,687,891
Ensembl chr 1:69,623,775...69,644,904
JBrowse link
G RPGR retinitis pigmentosa GTPase regulator acts_upstream_of_or_within ISO (MGI:1354839|PMID:10725384) MGI PMID:10725384 MGI:1354839 NCBI chr  X:30,718,669...30,777,671 JBrowse link
G SOX2 SRY-box transcription factor 2 acts_upstream_of_or_within ISO (MGI:3624065|PMID:16651659) MGI PMID:16651659 MGI:3624065 NCBI chr 3:178,744,881...178,747,392
Ensembl chr 3:186,922,705...186,923,662
JBrowse link
G VSX2 visual system homeobox 2 acts_upstream_of_or_within ISO (MGI:3701027|PMID:16854970), (MGI:79586|PMID:8630490) MGI PMID:8630490 PMID:16854970 MGI:3701027 MGI:79586 NCBI chr14:54,797,734...54,821,081 JBrowse link
retinal bipolar neuron differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BHLHE22 basic helix-loop-helix family member e22 acts_upstream_of_or_within ISO (MGI:3703109|PMID:17092954) MGI PMID:17092954 MGI:3703109 NCBI chr 8:61,119,561...61,122,827 JBrowse link
G CABP4 calcium binding protein 4 acts_upstream_of_or_within ISO (MGI:3609280|PMID:16249514) MGI PMID:16249514 MGI:3609280 NCBI chr11:62,813,477...62,820,425
Ensembl chr11:66,121,992...66,128,758
JBrowse link
G CASZ1 castor zinc finger 1 acts_upstream_of_or_within ISO (MGI:5630049|PMID:24467707) MGI PMID:24467707 MGI:5630049 NCBI chr 1:9,396,936...9,557,100
Ensembl chr 1:10,622,519...10,677,091
JBrowse link
G IKZF1 IKAROS family zinc finger 1 acts_upstream_of_or_within ISO (MGI:5629913|PMID:25654255) MGI PMID:25654255 MGI:5629913 NCBI chr 7:50,946,817...51,047,168
Ensembl chr 7:51,191,685...51,291,245
JBrowse link
G IRX5 iroquois homeobox 5 acts_upstream_of_or_within ISO (MGI:3776945|PMID:18322081) MGI PMID:18322081 MGI:3776945 NCBI chr16:35,164,884...35,168,189
Ensembl chr16:54,272,412...54,275,124
JBrowse link
G IRX6 iroquois homeobox 6 acts_upstream_of_or_within ISO (MGI:5447580|PMID:23172916) MGI PMID:23172916 MGI:5447580 NCBI chr16:35,556,558...35,563,568
Ensembl chr16:54,662,732...54,669,745
JBrowse link
G VSX1 visual system homeobox 1 acts_upstream_of_or_within ISO (MGI:3776945|PMID:18322081)
(MGI:3039332|PMID:15043821)
(MGI:3029641|PMID:14745032)
MGI PMID:14745032 PMID:15043821 PMID:18322081 MGI:3029641 MGI:3039332 MGI:3776945 NCBI chr20:25,011,149...25,025,545
Ensembl chr20:25,361,216...25,372,705
JBrowse link
G VSX2 visual system homeobox 2 acts_upstream_of_or_within ISO (MGI:79586|PMID:8630490) MGI PMID:8630490 MGI:79586 NCBI chr14:54,797,734...54,821,081 JBrowse link
G ZHX2 zinc fingers and homeoboxes 2 involved_in ISO (MGI:6214404|PMID:30146259) UniProt PMID:30146259 MGI:6214404 NCBI chr 8:119,473,607...119,668,790
Ensembl chr 8:122,401,567...122,404,080
JBrowse link
retinal cone cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHI1 Abelson helper integration site 1 involved_in ISO (MGI:4437526|PMID:20081859) CACAO PMID:20081859 MGI:4437526 NCBI chr 6:133,055,026...133,273,591
Ensembl chr 6:137,156,237...137,361,232
JBrowse link
G CABP4 calcium binding protein 4 acts_upstream_of_or_within ISO (MGI:3609280|PMID:16249514) MGI PMID:16249514 MGI:3609280 NCBI chr11:62,813,477...62,820,425
Ensembl chr11:66,121,992...66,128,758
JBrowse link
G CNGA3 cyclic nucleotide gated channel subunit alpha 3 acts_upstream_of_or_within ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chr2A:100,911,053...100,962,278
Ensembl chr2A:99,259,808...99,308,517
JBrowse link
G CRB2 crumbs cell polarity complex component 2 involved_in ISO (MGI:5461109|PMID:23001562) UniProt PMID:23001562 MGI:5461109 NCBI chr 9:94,473,423...94,511,285
Ensembl chr 9:123,011,968...123,032,855
JBrowse link
G DIO3 iodothyronine deiodinase 3 acts_upstream_of_or_within ISO (MGI:4441081|PMID:20203194) MGI PMID:20203194 MGI:4441081 NCBI chr14:82,188,126...82,190,220 JBrowse link
G GNAT2 G protein subunit alpha transducin 2 acts_upstream_of_or_within ISO (MGI:3714271|PMID:17065522), (MGI:4849309|PMID:21052544) MGI PMID:17065522 PMID:21052544 MGI:3714271 MGI:4849309 NCBI chr 1:111,980,855...111,990,686
Ensembl chr 1:111,208,510...111,225,808
JBrowse link
G HCN1 hyperpolarization activated cyclic nucleotide gated potassium channel 1 acts_upstream_of_or_within ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chr 5:64,673,392...65,116,259
Ensembl chr 5:69,724,767...70,158,761
JBrowse link
G PDE6C phosphodiesterase 6C acts_upstream_of_or_within ISO (MGI:4849309|PMID:21052544) MGI PMID:21052544 MGI:4849309 NCBI chr10:90,361,003...90,414,169
Ensembl chr10:93,871,704...93,924,654
JBrowse link
G RORB RAR related orphan receptor B involved_in ISO (MGI:3652638|PMID:16574740) UniProt PMID:16574740 MGI:3652638 NCBI chr 9:50,144,836...50,340,910
Ensembl chr 9:73,469,767...73,543,030
JBrowse link
G RP1 RP1 axonemal microtubule associated involved_in ISO (MGI:2676521|PMID:14507858) UniProt PMID:14507858 MGI:2676521 NCBI chr 8:50,979,412...51,311,431
Ensembl chr 8:48,419,033...48,583,879
Ensembl chr 8:48,419,033...48,583,879
JBrowse link
G THRB thyroid hormone receptor beta acts_upstream_of ISO (MGI:4441081|PMID:20203194) MGI PMID:20203194 MGI:4441081 NCBI chr 3:24,024,025...24,401,024
Ensembl chr 3:24,346,824...24,564,960
JBrowse link
G THY1 Thy-1 cell surface antigen involved_in ISO (MGI:1349255|PMID:10567740) UniProt PMID:10567740 MGI:1349255 NCBI chr11:114,253,535...114,259,495
Ensembl chr11:118,180,717...118,186,901
JBrowse link
retinal rod cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHI1 Abelson helper integration site 1 involved_in ISO (MGI:4437526|PMID:20081859) CACAO PMID:20081859 MGI:4437526 NCBI chr 6:133,055,026...133,273,591
Ensembl chr 6:137,156,237...137,361,232
JBrowse link
G ALMS1 ALMS1 centrosome and basal body associated protein acts_upstream_of_or_within ISO (MGI:3588454|PMID:16000322) MGI PMID:16000322 MGI:3588454 NCBI chr2A:73,438,657...73,671,313
Ensembl chr2A:74,926,650...75,152,139
JBrowse link
G BBS4 Bardet-Biedl syndrome 4 acts_upstream_of_or_within ISO (MGI:3044824|PMID:15173597) MGI PMID:15173597 MGI:3044824 NCBI chr15:51,601,526...51,656,460
Ensembl chr15:70,362,261...70,416,964
JBrowse link
G BHLHE23 basic helix-loop-helix family member e23 acts_upstream_of_or_within ISO (MGI:3814679|PMID:17255172) MGI PMID:17255172 MGI:3814679 NCBI chr20:59,385,608...59,392,078 JBrowse link
G CCDC66 coiled-coil domain containing 66 acts_upstream_of_or_within ISO (MGI:5141557|PMID:21680557) MGI PMID:21680557 MGI:5141557 NCBI chr 3:56,504,388...56,557,617
Ensembl chr 3:57,720,490...57,773,326
JBrowse link
G CFH complement factor H acts_upstream_of_or_within ISO (MGI:3760334|PMID:17921253) MGI PMID:17921253 MGI:3760334 NCBI chr 1:172,155,882...172,251,632
Ensembl chr 1:176,455,247...176,525,521
JBrowse link
G NAGLU N-acetyl-alpha-glucosaminidase acts_upstream_of_or_within ISO (MGI:3769195|PMID:17712420) MGI PMID:17712420 MGI:3769195 NCBI chr17:14,772,054...14,780,398
Ensembl chr17:14,996,420...15,004,242
JBrowse link
G NRL neural retina leucine zipper acts_upstream_of_or_within ISO (MGI:2385798|PMID:11694879) MGI PMID:11694879 MGI:2385798 NCBI chr14:4,858,105...4,891,207
Ensembl chr14:22,982,367...22,998,187
JBrowse link
G NTRK2 neurotrophic receptor tyrosine kinase 2 acts_upstream_of_or_within ISO (MGI:3039190|PMID:10516311) MGI PMID:10516311 MGI:3039190 NCBI chr 9:39,663,986...40,208,770
Ensembl chr 9:84,021,837...84,372,678
JBrowse link
G RORB RAR related orphan receptor B involved_in ISO (MGI:3652638|PMID:16574740), (MGI:4366105|PMID:19805139) UniProt PMID:16574740 PMID:19805139 MGI:3652638 MGI:4366105 NCBI chr 9:50,144,836...50,340,910
Ensembl chr 9:73,469,767...73,543,030
JBrowse link
G RP1 RP1 axonemal microtubule associated involved_in ISO (MGI:2676521|PMID:14507858) UniProt PMID:14507858 MGI:2676521 NCBI chr 8:50,979,412...51,311,431
Ensembl chr 8:48,419,033...48,583,879
Ensembl chr 8:48,419,033...48,583,879
JBrowse link
G TRPM1 transient receptor potential cation channel subfamily M member 1 acts_upstream_of_or_within ISO (MGI:4420740|PMID:19966281) MGI PMID:19966281 MGI:4420740 NCBI chr15:9,492,500...9,653,644
Ensembl chr15:28,530,878...28,690,947
JBrowse link
retinal rod cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PTN pleiotrophin ISO RGD PMID:16914133 RGD:9831439 NCBI chr 7:129,184,786...129,300,815
Ensembl chr 7:141,701,430...141,705,623
JBrowse link
G SOX8 SRY-box transcription factor 8 acts_upstream_of_or_within ISO (MGI:4368088|PMID:19490914) MGI PMID:19490914 MGI:4368088
G SOX9 SRY-box transcription factor 9 acts_upstream_of_or_within ISO (MGI:4368088|PMID:19490914) MGI PMID:19490914 MGI:4368088 NCBI chr17:66,028,737...66,034,122 JBrowse link
retinal rod cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CASZ1 castor zinc finger 1 acts_upstream_of_or_within ISO (MGI:5629913|PMID:25654255) MGI PMID:25654255 MGI:5629913 NCBI chr 1:9,396,936...9,557,100
Ensembl chr 1:10,622,519...10,677,091
JBrowse link
rod bipolar cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G PTN pleiotrophin ISO RGD PMID:16914133 RGD:9831439 NCBI chr 7:129,184,786...129,300,815
Ensembl chr 7:141,701,430...141,705,623
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12659
    developmental process 5912
      anatomical structure morphogenesis 2611
        animal organ morphogenesis 1051
          sensory organ morphogenesis 306
            eye morphogenesis 173
              camera-type eye morphogenesis 139
                cell motility involved in camera-type eye morphogenesis 0
                ciliary body morphogenesis 5
                embryonic camera-type eye morphogenesis + 29
                establishment of epithelial cell apical/basal polarity involved in camera-type eye morphogenesis 1
                iris morphogenesis 7
                lens morphogenesis in camera-type eye + 26
                post-embryonic camera-type eye morphogenesis 5
                retina morphogenesis in camera-type eye + 71
Path 2
Term Annotations click to browse term
  biological_process 12659
    developmental process 5912
      anatomical structure development 5516
        multicellular organism development 5046
          system development 4748
            sensory system development 431
              visual system development 427
                eye development 425
                  eye morphogenesis 173
                    camera-type eye morphogenesis 139
                      cell motility involved in camera-type eye morphogenesis 0
                      ciliary body morphogenesis 5
                      embryonic camera-type eye morphogenesis + 29
                      establishment of epithelial cell apical/basal polarity involved in camera-type eye morphogenesis 1
                      iris morphogenesis 7
                      lens morphogenesis in camera-type eye + 26
                      post-embryonic camera-type eye morphogenesis 5
                      retina morphogenesis in camera-type eye + 71
paths to the root