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ONTOLOGY REPORT - ANNOTATIONS


Term:embryonic digestive tract development
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Accession:GO:0048566 term browser browse the term
Definition:The process whose specific outcome is the progression of the gut over time, from its formation to the mature structure during embryonic development. The gut is the region of the digestive tract extending from the beginning of the intestines to the anus.


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embryonic digestive tract development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase acts_upstream_of_or_within IMP (MGI:74163|PMID:7670465) MGI PMID:7670465 MGI:74163 NCBI chr 2:163,726,571...163,750,239
Ensembl chr 2:163,726,584...163,750,239
JBrowse link
G Aldh1a2 aldehyde dehydrogenase family 1, subfamily A2 acts_upstream_of_or_within IMP (MGI:3663954|PMID:16806149) MGI PMID:16806149 MGI:3663954 NCBI chr 9:71,215,789...71,296,243
Ensembl chr 9:71,215,789...71,296,243
JBrowse link
G Cxcl15 chemokine (C-X-C motif) ligand 15 involved_in ISO (PMID:20875417) DFLAT PMID:20875417 NCBI chr 5:90,794,534...90,803,067
Ensembl chr 5:90,794,534...90,803,067
JBrowse link
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within IMP (MGI:3611702|PMID:16308329) MGI PMID:16308329 MGI:3611702 NCBI chr13:118,714,699...118,792,573
Ensembl chr13:118,669,791...118,792,115
JBrowse link
G Fgf9 fibroblast growth factor 9 acts_upstream_of_or_within IMP (MGI:3611702|PMID:16308329) MGI PMID:16308329 MGI:3611702 NCBI chr14:58,070,671...58,112,854
Ensembl chr14:58,070,547...58,112,720
JBrowse link
G Foxf1 forkhead box F1 acts_upstream_of_or_within IGI (MGI:3617131|PMID:16439479) MGI PMID:16439479 MGI:3617131 NCBI chr 8:121,084,386...121,088,154
Ensembl chr 8:121,084,386...121,088,144
JBrowse link
G Foxf2 forkhead box F2 acts_upstream_of_or_within IGI (MGI:3617131|PMID:16439479) MGI PMID:16439479 MGI:3617131 NCBI chr13:31,625,816...31,631,406
Ensembl chr13:31,625,816...31,631,403
JBrowse link
G Gli2 GLI-Kruppel family member GLI2 acts_upstream_of_or_within IMP (MGI:1353327|PMID:10693670) MGI PMID:10693670 MGI:1353327 NCBI chr 1:118,834,061...119,054,405
Ensembl chr 1:118,834,132...119,053,619
JBrowse link
G Gli3 GLI-Kruppel family member GLI3 acts_upstream_of_or_within IMP (MGI:1353327|PMID:10693670) MGI PMID:10693670 MGI:1353327 NCBI chr13:15,463,723...15,730,026
Ensembl chr13:15,463,235...15,730,026
JBrowse link
G Myb myeloblastosis oncogene acts_upstream_of_or_within IMP (MGI:1346939|PMID:10523863) MGI PMID:10523863 MGI:1346939 NCBI chr10:21,124,930...21,160,984
Ensembl chr10:21,124,935...21,160,984
JBrowse link
G Pcsk5 proprotein convertase subtilisin/kexin type 5 involved_in ISO
IMP
(MGI:3795695|PMID:18519639) MGI
BHF-UCL
PMID:18519639 GO_REF:0000096 MGI:3795695 MGI:4834177 NCBI chr19:17,432,314...17,837,712
Ensembl chr19:17,432,319...17,837,632
JBrowse link
G Pkdcc protein kinase domain containing, cytoplasmic involved_in IMP (MGI:3813934|PMID:19097194) UniProt PMID:19097194 MGI:3813934 NCBI chr17:83,215,283...83,225,069
Ensembl chr17:83,215,292...83,225,070
JBrowse link
G Rarb retinoic acid receptor, beta involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr14:16,430,839...17,082,331
Ensembl chr14:16,430,839...16,819,156
JBrowse link
G Rarres2 retinoic acid receptor responder (tazarotene induced) 2 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 6:48,569,696...48,572,845
Ensembl chr 6:48,569,696...48,572,789
JBrowse link
G Sall1 spalt like transcription factor 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 8:89,027,242...89,044,162
Ensembl chr 8:89,027,235...89,044,162
JBrowse link
G Sct secretin ISO RGD PMID:1711228 RGD:729899 NCBI chr 7:141,278,329...141,279,174
Ensembl chr 7:141,278,330...141,279,133
JBrowse link
G Stra6 stimulated by retinoic acid gene 6 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 9:58,063,793...58,154,004
Ensembl chr 9:58,063,788...58,153,996
JBrowse link
G Tgfb2 transforming growth factor, beta 2 involved_in ISO (PMID:20875417) DFLAT PMID:20875417 NCBI chr 1:186,622,787...186,709,697
Ensembl chr 1:186,622,792...186,705,989
JBrowse link
G Tnf tumor necrosis factor involved_in ISO (PMID:20875417) DFLAT PMID:20875417 NCBI chr17:35,199,367...35,202,007
Ensembl chr17:35,199,381...35,202,007
JBrowse link
embryonic digestive tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within IMP (MGI:3722952|PMID:16618415)
(MGI:3040447|PMID:15017552)
MGI PMID:15017552 PMID:16618415 MGI:3040447 MGI:3722952 NCBI chr13:118,714,699...118,792,573
Ensembl chr13:118,669,791...118,792,115
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within IMP (MGI:3722952|PMID:16618415), (MGI:5317412|PMID:21492869)
(MGI:5285062|PMID:21550054)
MGI PMID:16618415 PMID:21492869 PMID:21550054 MGI:3722952 MGI:5285062 MGI:5317412 NCBI chr 7:130,162,451...130,266,808
Ensembl chr 7:130,162,451...133,123,350
JBrowse link
G Foxf1 forkhead box F1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 8:121,084,386...121,088,154
Ensembl chr 8:121,084,386...121,088,144
JBrowse link
G Gata4 GATA binding protein 4 acts_upstream_of_or_within IMP (MGI:3590399|PMID:16127717) MGI PMID:16127717 MGI:3590399 NCBI chr14:63,198,914...63,271,712
Ensembl chr14:63,198,922...63,271,692
JBrowse link
G Gli3 GLI-Kruppel family member GLI3 acts_upstream_of_or_within IMP (MGI:3608164|PMID:16247775) MGI PMID:16247775 MGI:3608164 NCBI chr13:15,463,723...15,730,026
Ensembl chr13:15,463,235...15,730,026
JBrowse link
G Hlx H2.0-like homeobox acts_upstream_of_or_within IMP (MGI:79044|PMID:8557196) MGI PMID:8557196 MGI:79044 NCBI chr 1:184,727,143...184,732,493
Ensembl chr 1:184,727,140...184,732,619
JBrowse link
G Hnf1b HNF1 homeobox B acts_upstream_of_or_within IMP (MGI:3807614|PMID:18635606) MGI PMID:18635606 MGI:3807614 NCBI chr11:83,850,209...83,905,917
Ensembl chr11:83,850,063...83,905,819
JBrowse link
G Id2 inhibitor of DNA binding 2 involved_in IDA (MGI:4399020|PMID:16888283) UniProt PMID:16888283 MGI:4399020 NCBI chr12:25,093,799...25,096,092
Ensembl chr12:25,093,799...25,097,140
JBrowse link
G Ihh Indian hedgehog acts_upstream_of_or_within IMP (MGI:1858523|PMID:10821773) MGI PMID:10821773 MGI:1858523 NCBI chr 1:74,945,315...74,951,672
Ensembl chr 1:74,945,315...74,951,672
JBrowse link
G Nipbl NIPBL cohesin loading factor involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr15:8,289,824...8,465,315
Ensembl chr15:8,290,617...8,444,463
JBrowse link
G Ovol2 ovo like zinc finger 2 acts_upstream_of_or_within IMP (MGI:3618450|PMID:16423343) MGI PMID:16423343 MGI:3618450 NCBI chr 2:144,305,175...144,332,080
Ensembl chr 2:144,305,175...144,332,146
JBrowse link
G Pdgfra platelet derived growth factor receptor, alpha polypeptide involved_in IMP (MGI:1860627|PMID:10903171) UniProt PMID:10903171 MGI:1860627 NCBI chr 5:75,151,322...75,198,206
Ensembl chr 5:75,152,292...75,198,215
JBrowse link
G Pitx2 paired-like homeodomain transcription factor 2 acts_upstream_of_or_within IMP (MGI:5285062|PMID:21550054) MGI PMID:21550054 MGI:5285062 NCBI chr 3:129,199,878...129,219,594
Ensembl chr 3:129,199,878...129,219,591
JBrowse link
G Shh sonic hedgehog involved_in
acts_upstream_of_or_within
TAS
IMP
(MGI:5306328|PMID:11001584)
(MGI:1858523|PMID:10821773)
BHF-UCL
MGI
PMID:10821773 PMID:11001584 MGI:1858523 MGI:5306328 NCBI chr 5:28,456,840...28,467,101
Ensembl chr 5:28,456,815...28,467,256
JBrowse link
G Shox2 short stature homeobox 2 acts_upstream_of_or_within IMP (MGI:3604918|PMID:16141225) MGI PMID:16141225 MGI:3604918 NCBI chr 3:66,971,723...66,981,771
Ensembl chr 3:66,971,727...66,981,771
JBrowse link
G Six2 sine oculis-related homeobox 2 involved_in IMP (MGI:4365896|PMID:19660448) UniProt PMID:19660448 MGI:4365896 NCBI chr17:85,662,736...85,688,254
Ensembl chr17:85,684,277...85,688,274
JBrowse link
G Sox11 SRY (sex determining region Y)-box 11 involved_in IMP (MGI:3052265|PMID:15254231) UniProt PMID:15254231 MGI:3052265 NCBI chr12:27,334,268...27,342,718
Ensembl chr12:27,334,264...27,342,574
JBrowse link
G Tcf21 transcription factor 21 involved_in ISO RGD
MGI
PMID:11804032 GO_REF:0000096 MGI:4417868 RGD:727206 NCBI chr10:22,817,263...22,820,143
Ensembl chr10:22,817,281...22,820,174
JBrowse link
G Tcf7 transcription factor 7, T cell specific acts_upstream_of_or_within IGI (MGI:3042541|PMID:15057272) MGI PMID:15057272 MGI:3042541 NCBI chr11:52,246,527...52,283,383
Ensembl chr11:52,252,371...52,283,331
JBrowse link
G Tcf7l2 transcription factor 7 like 2, T cell specific, HMG box acts_upstream_of_or_within IGI (MGI:3042541|PMID:15057272) MGI PMID:15057272 MGI:3042541 NCBI chr19:55,741,797...55,933,659
Ensembl chr19:55,741,820...55,933,654
JBrowse link
embryonic ectodermal digestive tract development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Vps52 VPS52 GARP complex subunit acts_upstream_of_or_within IMP (MGI:5449815|PMID:23142660) MGI PMID:23142660 MGI:5449815 NCBI chr17:33,955,779...33,967,038
Ensembl chr17:33,955,812...33,967,035
JBrowse link
embryonic ectodermal digestive tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxf1 forkhead box F1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 8:121,084,386...121,088,154
Ensembl chr 8:121,084,386...121,088,144
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28611
    developmental process 7038
      anatomical structure development 6425
        animal organ development 4195
          embryonic organ development 546
            embryonic digestive tract development 37
              embryonic digestive tract morphogenesis + 20
              embryonic ectodermal digestive tract development + 2
Path 2
Term Annotations click to browse term
  biological_process 28611
    developmental process 7038
      anatomical structure development 6425
        multicellular organism development 5800
          system development 5455
            animal organ development 4195
              embryonic organ development 546
                embryonic digestive tract development 37
                  embryonic digestive tract morphogenesis + 20
                  embryonic ectodermal digestive tract development + 2
paths to the root