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ONTOLOGY REPORT - ANNOTATIONS


Term:embryonic digestive tract development
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Accession:GO:0048566 term browser browse the term
Definition:The process whose specific outcome is the progression of the gut over time, from its formation to the mature structure during embryonic development. The gut is the region of the digestive tract extending from the beginning of the intestines to the anus.


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embryonic digestive tract development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADA adenosine deaminase acts_upstream_of_or_within ISO (MGI:74163|PMID:7670465) MGI PMID:7670465 MGI:74163 NCBI chr20:40,950,238...40,982,481
Ensembl chr20:42,044,613...42,076,868
JBrowse link
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 acts_upstream_of_or_within ISO (MGI:3663954|PMID:16806149) MGI PMID:16806149 MGI:3663954 NCBI chr15:36,925,443...37,038,288
Ensembl chr15:55,237,101...55,557,168
JBrowse link
G CXCL8 C-X-C motif chemokine ligand 8 involved_in ISO (PMID:20875417) DFLAT PMID:20875417 NCBI chr 4:50,452,857...50,456,015
Ensembl chr 4:56,286,708...56,288,083
JBrowse link
G FGF10 fibroblast growth factor 10 acts_upstream_of_or_within ISO (MGI:3611702|PMID:16308329) MGI PMID:16308329 MGI:3611702 NCBI chr 5:65,979,443...66,069,314
Ensembl chr 5:71,028,187...71,111,706
JBrowse link
G FGF9 fibroblast growth factor 9 acts_upstream_of_or_within ISO (MGI:3611702|PMID:16308329) MGI PMID:16308329 MGI:3611702 NCBI chr13:2,967,713...3,000,554
Ensembl chr13:21,273,333...21,307,198
JBrowse link
G FOXF1 forkhead box F1 acts_upstream_of_or_within ISO (MGI:3617131|PMID:16439479) MGI PMID:16439479 MGI:3617131 NCBI chr16:67,183,416...67,188,211
Ensembl chr16:86,516,119...86,519,949
JBrowse link
G FOXF2 forkhead box F2 acts_upstream_of_or_within ISO (MGI:3617131|PMID:16439479) MGI PMID:16439479 MGI:3617131 NCBI chr 6:1,209,899...1,215,970 JBrowse link
G GLI2 GLI family zinc finger 2 acts_upstream_of_or_within ISO (MGI:1353327|PMID:10693670) MGI PMID:10693670 MGI:1353327 NCBI chr2B:7,665,403...7,922,840
Ensembl chr2B:121,303,831...121,497,442
JBrowse link
G GLI3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (MGI:1353327|PMID:10693670) MGI PMID:10693670 MGI:1353327 NCBI chr 7:42,004,965...42,280,772
Ensembl chr 7:42,056,565...42,322,865
JBrowse link
G MYB MYB proto-oncogene, transcription factor acts_upstream_of_or_within ISO (MGI:1346939|PMID:10523863) MGI PMID:10523863 MGI:1346939 NCBI chr 6:132,952,728...132,990,560
Ensembl chr 6:137,048,812...137,086,194
JBrowse link
G PCSK5 proprotein convertase subtilisin/kexin type 5 involved_in ISO (PMID:18519639)
(MGI:3795695|PMID:18519639)
BHF-UCL PMID:18519639 MGI:3795695 NCBI chr 9:48,480,607...48,943,331
Ensembl chr 9:74,745,761...75,220,502
JBrowse link
G PKDCC protein kinase domain containing, cytoplasmic involved_in ISO (MGI:3813934|PMID:19097194) UniProt PMID:19097194 MGI:3813934 NCBI chr2A:42,146,153...42,156,652 JBrowse link
G RARB retinoic acid receptor beta involved_in ISO (PMID:19443732) DFLAT PMID:19443732 NCBI chr 3:24,729,220...25,499,187
Ensembl chr 3:25,660,922...25,833,297
JBrowse link
G RARRES2 retinoic acid receptor responder 2 involved_in ISO (PMID:19443732) DFLAT PMID:19443732 NCBI chr 7:141,953,600...141,956,991
Ensembl chr 7:154,106,275...154,109,635
JBrowse link
G SALL1 spalt like transcription factor 1 involved_in ISO (PMID:18280297) UniProt PMID:18280297 NCBI chr16:31,396,399...31,412,753
Ensembl chr16:50,274,090...50,284,819
JBrowse link
G SCT secretin ISO RGD PMID:1711228 RGD:729899 NCBI chr11:632,073...634,296 JBrowse link
G STRA6 signaling receptor and transporter of retinol STRA6 involved_in ISO (PMID:17273977) DFLAT PMID:17273977 NCBI chr15:53,117,891...53,150,790
Ensembl chr15:72,741,482...72,770,876
JBrowse link
G TGFB2 transforming growth factor beta 2 involved_in ISO (PMID:20875417) DFLAT PMID:20875417 NCBI chr 1:193,907,398...194,005,800
Ensembl chr 1:198,758,751...198,859,041
JBrowse link
G TNF tumor necrosis factor involved_in ISO (PMID:20875417) DFLAT PMID:20875417 NCBI chr 6:31,236,650...31,239,423
Ensembl chr 6:32,126,618...32,129,381
JBrowse link
embryonic digestive tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FGF10 fibroblast growth factor 10 acts_upstream_of_or_within ISO (MGI:3722952|PMID:16618415)
(MGI:3040447|PMID:15017552)
MGI PMID:15017552 PMID:16618415 MGI:3040447 MGI:3722952 NCBI chr 5:65,979,443...66,069,314
Ensembl chr 5:71,028,187...71,111,706
JBrowse link
G FGFR2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO (MGI:3722952|PMID:16618415), (MGI:5317412|PMID:21492869)
(MGI:5285062|PMID:21550054)
MGI PMID:16618415 PMID:21492869 PMID:21550054 MGI:3722952 MGI:5285062 MGI:5317412 NCBI chr10:118,055,854...118,175,440
Ensembl chr10:121,469,735...121,588,815
JBrowse link
G FOXF1 forkhead box F1 involved_in ISO (PMID:19500772) DFLAT PMID:19500772 NCBI chr16:67,183,416...67,188,211
Ensembl chr16:86,516,119...86,519,949
JBrowse link
G GATA4 GATA binding protein 4 acts_upstream_of_or_within ISO (MGI:3590399|PMID:16127717) MGI PMID:16127717 MGI:3590399 NCBI chr 8:7,442,921...7,526,731 JBrowse link
G GLI3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (MGI:3608164|PMID:16247775) MGI PMID:16247775 MGI:3608164 NCBI chr 7:42,004,965...42,280,772
Ensembl chr 7:42,056,565...42,322,865
JBrowse link
G HLX H2.0 like homeobox acts_upstream_of_or_within ISO (MGI:79044|PMID:8557196) MGI PMID:8557196 MGI:79044 NCBI chr 1:196,465,704...196,471,803
Ensembl chr 1:201,500,470...201,506,222
JBrowse link
G HNF1B HNF1 homeobox B acts_upstream_of_or_within ISO (MGI:3807614|PMID:18635606) MGI PMID:18635606 MGI:3807614 NCBI chr17:19,333,485...19,392,147
Ensembl chr17:19,633,424...19,691,863
JBrowse link
G ID2 inhibitor of DNA binding 2 involved_in ISO (MGI:4399020|PMID:16888283) UniProt PMID:16888283 MGI:4399020 NCBI chr2A:8,681,592...8,684,014
Ensembl chr2A:8,847,776...8,850,720
JBrowse link
G IHH Indian hedgehog signaling molecule acts_upstream_of_or_within ISO (MGI:1858523|PMID:10821773) MGI PMID:10821773 MGI:1858523 NCBI chr2B:106,312,472...106,319,124
Ensembl chr2B:224,906,271...224,911,506
JBrowse link
G NIPBL NIPBL cohesin loading factor involved_in ISO (PMID:19242925), (PMID:8291537) BHF-UCL PMID:8291537 PMID:19242925 NCBI chr 5:73,306,527...73,491,367
Ensembl chr 5:78,585,649...78,698,184
JBrowse link
G OVOL2 ovo like zinc finger 2 acts_upstream_of_or_within ISO (MGI:3618450|PMID:16423343) MGI PMID:16423343 MGI:3618450 NCBI chr20:17,983,277...18,019,441
Ensembl chr20:17,962,123...17,994,486
JBrowse link
G PDGFRA platelet derived growth factor receptor alpha involved_in ISO (MGI:1860627|PMID:10903171) UniProt PMID:10903171 MGI:1860627 NCBI chr 4:69,639,081...69,709,870
Ensembl chr 4:76,199,382...76,271,097
JBrowse link
G PITX2 paired like homeodomain 2 acts_upstream_of_or_within ISO (MGI:5285062|PMID:21550054) MGI PMID:21550054 MGI:5285062 NCBI chr 4:103,112,624...103,137,356 JBrowse link
G SHH sonic hedgehog signaling molecule acts_upstream_of_or_within ISO (MGI:1858523|PMID:10821773) MGI PMID:10821773 MGI:1858523 NCBI chr 7:147,400,112...147,414,036
Ensembl chr 7:159,114,666...159,126,651
JBrowse link
G SHOX2 short stature homeobox 2 acts_upstream_of_or_within ISO (MGI:3604918|PMID:16141225) MGI PMID:16141225 MGI:3604918 NCBI chr 3:155,138,969...155,149,619
Ensembl chr 3:163,190,284...163,199,239
JBrowse link
G SIX2 SIX homeobox 2 involved_in ISO (MGI:4365896|PMID:19660448) UniProt PMID:19660448 MGI:4365896 NCBI chr2A:45,109,414...45,113,887
Ensembl chr2A:46,039,582...46,044,035
JBrowse link
G SOX11 SRY-box transcription factor 11 involved_in ISO (MGI:3052265|PMID:15254231) UniProt PMID:15254231 MGI:3052265 NCBI chr2A:5,699,738...5,711,210 JBrowse link
G TCF21 transcription factor 21 ISO RGD PMID:11804032 RGD:727206 NCBI chr 6:131,656,582...131,662,983
Ensembl chr 6:135,754,896...135,761,294
JBrowse link
G TCF7 transcription factor 7 acts_upstream_of_or_within ISO (MGI:3042541|PMID:15057272) MGI PMID:15057272 MGI:3042541 NCBI chr 5:129,518,134...129,549,972
Ensembl chr 5:135,671,095...135,702,734
JBrowse link
G TCF7L2 transcription factor 7 like 2 acts_upstream_of_or_within ISO (MGI:3042541|PMID:15057272) MGI PMID:15057272 MGI:3042541 NCBI chr10:109,541,524...109,759,499
Ensembl chr10:112,978,167...113,192,281
JBrowse link
embryonic ectodermal digestive tract development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G VPS52 VPS52 subunit of GARP complex acts_upstream_of_or_within ISO (MGI:5449815|PMID:23142660) MGI PMID:23142660 MGI:5449815 NCBI chr 6:32,822,394...32,844,120
Ensembl chr 6:33,936,683...33,958,404
JBrowse link
embryonic ectodermal digestive tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FOXF1 forkhead box F1 involved_in ISO (PMID:19500772) DFLAT PMID:19500772 NCBI chr16:67,183,416...67,188,211
Ensembl chr16:86,516,119...86,519,949
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12657
    developmental process 5905
      anatomical structure development 5509
        animal organ development 3658
          embryonic organ development 508
            embryonic digestive tract development 37
              embryonic digestive tract morphogenesis + 20
              embryonic ectodermal digestive tract development + 2
Path 2
Term Annotations click to browse term
  biological_process 12657
    developmental process 5905
      anatomical structure development 5509
        multicellular organism development 5038
          system development 4740
            animal organ development 3658
              embryonic organ development 508
                embryonic digestive tract development 37
                  embryonic digestive tract morphogenesis + 20
                  embryonic ectodermal digestive tract development + 2
paths to the root