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ONTOLOGY REPORT - ANNOTATIONS


Term:digestive tract development
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Accession:GO:0048565 term browser browse the term
Definition:The process whose specific outcome is the progression of the digestive tract over time, from its formation to the mature structure. The digestive tract is the anatomical structure through which food passes and is processed.
Synonyms:narrow_synonym: intestinal development;   intestine development
 broad_synonym: gut development


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digestive tract development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alx4 ALX homeobox 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:9268572) Ensembl
MGI
PMID:9268572 GO_REF:0000107 NCBI chrNW_004936562:4,316,550...4,326,022
Ensembl chrNW_004936562:4,314,870...4,326,000
JBrowse link
G Cckbr cholecystokinin B receptor involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:15476751) Ensembl
MGI
PMID:15476751 GO_REF:0000107 NCBI chrNW_004936842:329,551...341,491
Ensembl chrNW_004936842:329,376...341,808
JBrowse link
G Ccnb1 cyclin B1 ISO perinatal small intestine RGD PMID:17692466 RGD:2316322 NCBI chrNW_004936480:400,287...407,677
Ensembl chrNW_004936480:399,224...407,704
JBrowse link
G Cd36 CD36 molecule (CD36 blood group) ISO RGD PMID:11595646 RGD:628450 NCBI chrNW_004936810:791,823...838,303
Ensembl chrNW_004936810:758,182...838,365
JBrowse link
G Chd8 chromodomain helicase DNA binding protein 8 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:27602517) Ensembl
MGI
PMID:27602517 GO_REF:0000107 NCBI chrNW_004936880:546,250...608,061
Ensembl chrNW_004936880:546,236...608,080
JBrowse link
G Cldn18 claudin 18 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:22437732) Ensembl
MGI
PMID:22437732 GO_REF:0000107 NCBI chrNW_004936540:373,889...401,535
Ensembl chrNW_004936540:373,889...401,535
JBrowse link
G Clmp CXADR like membrane protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936542:7,591,223...7,685,040
Ensembl chrNW_004936542:7,587,272...7,685,144
JBrowse link
G Cobl cordon-bleu WH2 repeat protein involved_in ISO (PMID:7586755) BHF-UCL PMID:7586755 NCBI chrNW_004936686:621,502...872,824 JBrowse link
G Col3a1 collagen type III alpha 1 chain involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:9050868) Ensembl
MGI
PMID:9050868 GO_REF:0000107 NCBI chrNW_004936506:8,886,494...8,923,921
Ensembl chrNW_004936506:8,886,494...8,923,930
JBrowse link
G Dchs1 dachsous cadherin-related 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21303848) Ensembl
MGI
PMID:21303848 GO_REF:0000107 NCBI chrNW_004936842:677,416...697,013
Ensembl chrNW_004936842:677,416...697,003
JBrowse link
G Dicer1 dicer 1, ribonuclease III acts_upstream_of_or_within ISO (PMID:21307095) MGI PMID:21307095 NCBI chrNW_004936846:528,768...584,599
Ensembl chrNW_004936846:532,972...575,689
JBrowse link
G Ep300 E1A binding protein p300 ISO RGD PMID:17916272 RGD:2312267 NCBI chrNW_004936492:696,982...778,132
Ensembl chrNW_004936492:696,960...778,138
JBrowse link
G Fat4 FAT atypical cadherin 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21303848) Ensembl
MGI
PMID:21303848 GO_REF:0000107 NCBI chrNW_004936662:3,537,917...3,704,012
Ensembl chrNW_004936662:3,537,925...3,690,877
JBrowse link
G Fgf10 fibroblast growth factor 10 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:15234214) Ensembl
MGI
PMID:15234214 GO_REF:0000107 NCBI chrNW_004936480:18,114,231...18,195,884
Ensembl chrNW_004936480:18,114,204...18,195,898
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO (PMID:15234214) MGI PMID:15234214 NCBI chrNW_004936486:10,506,680...10,606,272
Ensembl chrNW_004936486:10,507,097...10,602,019
JBrowse link
G Foxf1 forkhead box F1 involved_in ISO (PMID:19500772) DFLAT PMID:19500772 NCBI chrNW_004943883:4...1,756 JBrowse link
G Hrh2 histamine receptor H2 acts_upstream_of_or_within ISO (PMID:10862789)
(PMID:15476751)
MGI PMID:10862789 PMID:15476751 NCBI chrNW_004936609:624,446...664,049
Ensembl chrNW_004936609:622,311...664,084
JBrowse link
G Kit KIT proto-oncogene, receptor tyrosine kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936482:17,162,854...17,238,319
Ensembl chrNW_004936482:17,162,950...17,238,274
JBrowse link
G Lgr4 leucine rich repeat containing G protein-coupled receptor 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:24680895) Ensembl
MGI
PMID:24680895 GO_REF:0000107 NCBI chrNW_004936540:5,752,319...5,846,074
Ensembl chrNW_004936540:5,752,197...5,845,159
JBrowse link
G LOC101958024 mucin-19 acts_upstream_of_or_within ISO (PMID:37475871) MGI PMID:37475871 NCBI chrNW_004936607:418,290...443,988 JBrowse link
G LOC101969148 cytochrome P450 1A1 ISO RGD PMID:12162855 RGD:727721 NCBI chrNW_004936471:33,682,730...33,688,332
Ensembl chrNW_004936471:33,682,730...33,688,332
JBrowse link
G Mixl1 Mix paired-like homeobox involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:12117810) Ensembl
MGI
PMID:12117810 GO_REF:0000107 NCBI chrNW_004936526:2,984,900...2,989,494
Ensembl chrNW_004936526:2,984,907...2,987,893
JBrowse link
G Muc4 mucin 4, cell surface associated ISO RGD PMID:15389518 RGD:2303738 NCBI chrNW_004936784:515,608...539,915 JBrowse link
G Myocd myocardin involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21357509) Ensembl
MGI
PMID:21357509 GO_REF:0000107 NCBI chrNW_004936595:5,256,615...5,356,563
Ensembl chrNW_004936595:5,256,785...5,351,723
JBrowse link
G Nipbl NIPBL cohesin loading factor involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004936518:4,870,686...5,041,099
Ensembl chrNW_004936518:4,869,546...4,969,450
JBrowse link
G Nkx2-2 NK2 homeobox 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:18987169) Ensembl
MGI
PMID:18987169 GO_REF:0000107 NCBI chrNW_004936620:3,961,106...3,962,910
Ensembl chrNW_004936620:3,961,106...3,969,503
JBrowse link
G Nkx2-3 NK2 homeobox 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:10207146)
(PMID:10926756)
Ensembl
MGI
PMID:10207146 PMID:10926756 GO_REF:0000107 NCBI chrNW_004936636:529,669...532,237
Ensembl chrNW_004936636:529,669...532,237
JBrowse link
G Nkx2-6 NK2 homeobox 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936555:7,111,678...7,114,944
Ensembl chrNW_004936555:7,111,678...7,114,944
JBrowse link
G Npr2 natriuretic peptide receptor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936524:3,779,398...3,798,074
Ensembl chrNW_004936524:3,779,392...3,798,501
JBrowse link
G Nr1h3 nuclear receptor subfamily 1 group H member 3 ISO intestine RGD PMID:17341476 RGD:401827282 NCBI chrNW_004936562:1,937,665...1,946,680
Ensembl chrNW_004936562:1,937,667...1,946,669
JBrowse link
G Nr1h4 nuclear receptor subfamily 1 group H member 4 ISO RGD PMID:11984532 RGD:1625207 NCBI chrNW_004936492:13,315,265...13,365,186
Ensembl chrNW_004936492:13,315,265...13,374,034
JBrowse link
G Nts neurotensin ISO RGD PMID:8571204 RGD:9743850 NCBI chrNW_004936507:3,318,982...3,329,248
Ensembl chrNW_004936507:3,318,915...3,329,342
JBrowse link
G Oxtr oxytocin receptor ISO RGD PMID:19003903 RGD:2303961 NCBI chrNW_004936602:4,241,743...4,259,866
Ensembl chrNW_004936602:4,241,737...4,260,549
JBrowse link
G Pdgfa platelet derived growth factor subunit A acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:23938297) MGI
Ensembl
PMID:23938297 GO_REF:0000107 NCBI chrNW_004936754:808,894...828,554
Ensembl chrNW_004936754:808,213...828,613
JBrowse link
G Pdgfc platelet derived growth factor C involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:23938297) Ensembl
MGI
PMID:23938297 GO_REF:0000107 NCBI chrNW_004936576:3,357,399...3,555,828
Ensembl chrNW_004936576:3,357,424...3,554,890
JBrowse link
G Pdx1 pancreatic and duodenal homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:19619492) Ensembl
MGI
PMID:19619492 GO_REF:0000107 NCBI chrNW_004936472:23,102,534...23,107,127
Ensembl chrNW_004936472:23,102,534...23,107,127
JBrowse link
G Pkd1 polycystin 1, transient receptor potential channel interacting involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936694:1,923,383...1,958,160
Ensembl chrNW_004936694:1,930,621...1,957,179
JBrowse link
G Rb1 RB transcriptional corepressor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:17257418) Ensembl
MGI
PMID:17257418 GO_REF:0000107 NCBI chrNW_004936565:1,596,227...1,746,706
Ensembl chrNW_004936565:1,597,593...1,746,846
JBrowse link
G Rcbtb2 RCC1 and BTB domain containing protein 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:26291700) MGI
Ensembl
PMID:26291700 GO_REF:0000107 NCBI chrNW_004936565:1,750,565...1,789,779
Ensembl chrNW_004936565:1,750,105...1,789,737
JBrowse link
G Slc4a2 solute carrier family 4 member 2 ISO RGD PMID:8770049 RGD:9999233 NCBI chrNW_004936527:6,485,566...6,499,901
Ensembl chrNW_004936527:6,485,511...6,499,924
JBrowse link
G Smo smoothened, frizzled class receptor involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:19619492) Ensembl
MGI
PMID:19619492 GO_REF:0000107 NCBI chrNW_004936579:5,893,064...5,917,021
Ensembl chrNW_004936579:5,892,542...5,917,281
JBrowse link
G Tgfb1 transforming growth factor beta 1 ISO RGD PMID:12815632 RGD:2302031 NCBI chrNW_004936661:3,742,080...3,758,266
Ensembl chrNW_004936661:3,742,066...3,758,272
JBrowse link
G Tgfb2 transforming growth factor beta 2 ISO RGD PMID:12815632 RGD:2302031 NCBI chrNW_004936628:310,720...394,002
Ensembl chrNW_004936628:308,691...394,007
JBrowse link
G Tgfb3 transforming growth factor beta 3 ISO RGD PMID:12815632 RGD:2302031 NCBI chrNW_004936488:4,986,712...5,008,728
Ensembl chrNW_004936488:4,986,748...5,008,496
JBrowse link
G Tgfbr1 transforming growth factor beta receptor 1 ISO RGD PMID:12815632 RGD:2302031 NCBI chrNW_004936524:7,656,523...7,680,043
Ensembl chrNW_004936524:7,655,847...7,681,097
JBrowse link
G Tgfbr2 transforming growth factor beta receptor 2 ISO RGD PMID:12815632 RGD:2302031 NCBI chrNW_004936473:21,324,669...21,409,430
Ensembl chrNW_004936473:21,324,658...21,409,430
JBrowse link
G Thra thyroid hormone receptor alpha ISO RGD PMID:17496154 RGD:2314319 NCBI chrNW_004936490:15,188,341...15,206,032
Ensembl chrNW_004936490:15,193,150...15,206,784
JBrowse link
G Tk1 thymidine kinase 1 ISO RGD PMID:6701043 RGD:2317231 NCBI chrNW_004936594:2,784,891...2,794,693
Ensembl chrNW_004936594:2,784,226...2,794,830
JBrowse link
chordate pharynx development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chrd chordin involved_in ISO (PMID:12810603) MGI PMID:12810603 NCBI chrNW_004936578:5,498,473...5,507,195
Ensembl chrNW_004936578:5,498,887...5,507,198
JBrowse link
G Crkl CRK like proto-oncogene, adaptor protein involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:25565927) Ensembl
MGI
PMID:25565927 GO_REF:0000107 NCBI chrNW_004936619:2,447,686...2,479,589
Ensembl chrNW_004936619:2,447,614...2,479,805
JBrowse link
G Ednrb endothelin receptor type B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936511:3,446,864...3,478,434
Ensembl chrNW_004936511:3,446,839...3,478,434
JBrowse link
G Foxe1 forkhead box E1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936524:6,619,128...6,620,278
Ensembl chrNW_004936524:6,619,128...6,620,278
JBrowse link
cloacal septation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tp63 tumor protein p63 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:12368184) Ensembl
MGI
PMID:12368184 GO_REF:0000107 NCBI chrNW_004936578:492,267...705,282
Ensembl chrNW_004936578:491,507...705,729
JBrowse link
G Wnt11 Wnt family member 11 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936498:4,909,041...4,927,482
Ensembl chrNW_004936498:4,908,978...4,927,165
JBrowse link
determination of digestive tract left/right asymmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccdc39 coiled-coil domain 39 molecular ruler complex subunit involved_in ISO (PMID:22693285) BHF-UCL PMID:22693285 NCBI chrNW_004936566:2,610,756...2,663,657 JBrowse link
G Ccdc40 coiled-coil domain 40 molecular ruler complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936594:4,075,105...4,124,850
Ensembl chrNW_004936594:4,089,214...4,124,153
JBrowse link
G Dnaaf1 dynein axonemal assembly factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936641:3,656,331...3,674,907
Ensembl chrNW_004936641:3,657,058...3,673,729
JBrowse link
G Dnaaf19 dynein axonemal assembly factor 19 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936541:1,259,422...1,263,885
Ensembl chrNW_004936541:1,261,044...1,262,858
JBrowse link
G Megf8 multiple EGF like domains 8 involved_in
acts_upstream_of_or_within
IEA
ISO
ISS
(PMID:18043505) Ensembl
MGI
UniProt
PMID:18043505 GO_REF:0000024 GO_REF:0000107 NCBI chrNW_004936706:157,167...198,071
Ensembl chrNW_004936706:157,019...197,500
JBrowse link
G Zic3 Zic family member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936513:9,780,895...9,792,865
Ensembl chrNW_004936513:9,786,709...9,793,077
JBrowse link
determination of intestine left/right asymmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nphp3 nephrocystin 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936529:6,013,321...6,048,249
Ensembl chrNW_004936529:6,009,301...6,049,447
JBrowse link
determination of stomach left/right asymmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nphp3 nephrocystin 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936529:6,013,321...6,048,249
Ensembl chrNW_004936529:6,009,301...6,049,447
JBrowse link
digestive tract mesoderm development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Shh sonic hedgehog signaling molecule ISO RGD PMID:9368764 RGD:2306312 NCBI chrNW_004936527:10,033,095...10,042,713
Ensembl chrNW_004936527:10,033,299...10,042,599
JBrowse link
digestive tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agr2 anterior gradient 2, protein disulphide isomerase family member involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936546:3,316,622...3,328,317
Ensembl chrNW_004936546:3,315,543...3,328,369
JBrowse link
G Bcl2 BCL2 apoptosis regulator involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:7812968) Ensembl
MGI
PMID:7812968 GO_REF:0000107 NCBI chrNW_004936497:2,209,136...2,373,580
Ensembl chrNW_004936497:2,210,334...2,210,921
JBrowse link
G Egfr epidermal growth factor receptor involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:7618084) Ensembl
MGI
PMID:7618084 GO_REF:0000107 NCBI chrNW_004936678:365,005...560,546
Ensembl chrNW_004936678:365,834...436,528
JBrowse link
G Ephb3 EPH receptor B3 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936578:5,286,580...5,297,369
Ensembl chrNW_004936578:5,287,340...5,298,142
JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 acts_upstream_of_or_within ISO (PMID:19407216) MGI PMID:19407216 NCBI chrNW_004936477:21,591,772...21,606,289
Ensembl chrNW_004936477:21,591,792...21,606,296
JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:20808783) Ensembl
MGI
PMID:20808783 GO_REF:0000107 NCBI chrNW_004936495:5,770,988...5,816,157
Ensembl chrNW_004936495:5,770,669...5,816,157
JBrowse link
G Il18 interleukin 18 ISO RGD PMID:21088234 RGD:4889157 NCBI chrNW_004936612:2,306,963...2,325,086
Ensembl chrNW_004936612:2,306,875...2,325,189
JBrowse link
G Nodal nodal growth differentiation factor involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:11311163) Ensembl
MGI
PMID:11311163 GO_REF:0000107 NCBI chrNW_004936521:8,171,146...8,178,802
Ensembl chrNW_004936521:8,171,146...8,178,705
JBrowse link
G Npr2 natriuretic peptide receptor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936524:3,779,398...3,798,074
Ensembl chrNW_004936524:3,779,392...3,798,501
JBrowse link
G Percc1 proline and glutamate rich with coiled coil 1 involved_in ISO (PMID:31217582) UniProt PMID:31217582 NCBI chrNW_004936694:2,475,981...2,479,716 JBrowse link
G Sfrp1 secreted frizzled related protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:19300477) Ensembl
MGI
PMID:19300477 GO_REF:0000107 NCBI chrNW_004936785:1,276,478...1,320,397
Ensembl chrNW_004936785:1,276,420...1,321,017
JBrowse link
G Sfrp2 secreted frizzled related protein 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:19300477) Ensembl
MGI
PMID:19300477 GO_REF:0000107 NCBI chrNW_004936576:604,174...612,440
Ensembl chrNW_004936576:604,069...613,021
JBrowse link
G Sfrp5 secreted frizzled related protein 5 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:19300477) Ensembl
MGI
PMID:19300477 GO_REF:0000107 NCBI chrNW_004936636:1,968,410...1,973,885
Ensembl chrNW_004936636:1,968,330...1,973,916
JBrowse link
G Shh sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:9731532) Ensembl
MGI
PMID:9731532 GO_REF:0000107 NCBI chrNW_004936527:10,033,095...10,042,713
Ensembl chrNW_004936527:10,033,299...10,042,599
JBrowse link
G Sox10 SRY-box transcription factor 10 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:15843399), (PMID:6512238) Ensembl
MGI
PMID:6512238 PMID:15843399 GO_REF:0000107 NCBI chrNW_004936492:3,173,770...3,183,423
Ensembl chrNW_004936492:3,173,741...3,185,024
JBrowse link
G Stra6 signaling receptor and transporter of retinol STRA6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:33,224,174...33,245,076
Ensembl chrNW_004936471:33,224,859...33,245,030
JBrowse link
G Stx2 syntaxin 2 ISO RGD PMID:12464668 RGD:1298909 NCBI chrNW_004936660:1,616,774...1,652,585
Ensembl chrNW_004936660:1,616,771...1,649,207
JBrowse link
G Tp73 tumor protein p73 acts_upstream_of_or_within ISO (PMID:10716451) MGI PMID:10716451 NCBI chrNW_004936737:171,894...211,464
Ensembl chrNW_004936737:172,467...211,464
JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO (PMID:19300477) MGI PMID:19300477 NCBI chrNW_004936740:228,377...242,318
Ensembl chrNW_004936740:228,317...242,601
JBrowse link
G Wnt5a Wnt family member 5A involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:19300477) Ensembl
MGI
PMID:19300477 GO_REF:0000107 NCBI chrNW_004936473:6,031,627...6,052,211
Ensembl chrNW_004936473:6,029,976...6,052,159
JBrowse link
embryonic digestive tract development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase acts_upstream_of_or_within ISO (PMID:7670465) MGI PMID:7670465 NCBI chrNW_004936530:2,217,713...2,224,070 JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family member A2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16806149) Ensembl
MGI
PMID:16806149 GO_REF:0000107 NCBI chrNW_004936471:19,175,997...19,263,335
Ensembl chrNW_004936471:19,175,992...19,263,335
JBrowse link
G Fgf10 fibroblast growth factor 10 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16308329) Ensembl
MGI
PMID:16308329 GO_REF:0000107 NCBI chrNW_004936480:18,114,231...18,195,884
Ensembl chrNW_004936480:18,114,204...18,195,898
JBrowse link
G Fgf9 fibroblast growth factor 9 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16308329) Ensembl
MGI
PMID:16308329 GO_REF:0000107 NCBI chrNW_004936720:282,291...316,629
Ensembl chrNW_004936720:279,521...316,674
JBrowse link
G Foxf1 forkhead box F1 acts_upstream_of_or_within ISO (PMID:16439479) MGI PMID:16439479 NCBI chrNW_004943883:4...1,756 JBrowse link
G Foxf2 forkhead box F2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16439479) Ensembl
MGI
PMID:16439479 GO_REF:0000107 NCBI chrNW_004936633:2,538,209...2,543,649
Ensembl chrNW_004936633:2,536,970...2,543,765
JBrowse link
G Gli2 GLI family zinc finger 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:10693670) Ensembl
MGI
PMID:10693670 GO_REF:0000107 NCBI chrNW_004936469:49,616,552...49,788,760
Ensembl chrNW_004936469:49,617,095...49,673,213
JBrowse link
G Gli3 GLI family zinc finger 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:10693670) Ensembl
MGI
PMID:10693670 GO_REF:0000107 NCBI chrNW_004936478:17,129,922...17,403,630
Ensembl chrNW_004936478:17,126,911...17,403,011
JBrowse link
G LOC101964975 interleukin-8 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936598:1,779,471...1,781,353
Ensembl chrNW_004936598:1,779,471...1,781,353
JBrowse link
G Myb MYB proto-oncogene, transcription factor acts_upstream_of_or_within ISO (PMID:10523863) MGI PMID:10523863 NCBI chrNW_004936560:2,797,943...2,828,813
Ensembl chrNW_004936560:2,796,697...2,829,650
JBrowse link
G Pcsk5 proprotein convertase subtilisin/kexin type 5 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936503:11,466,955...11,896,887
Ensembl chrNW_004936503:11,466,950...11,896,887
JBrowse link
G Pkdcc protein kinase domain containing, cytoplasmic involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936508:9,550,201...9,559,493
Ensembl chrNW_004936508:9,550,224...9,559,499
JBrowse link
G Rarb retinoic acid receptor beta involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936473:16,983,829...17,146,517
Ensembl chrNW_004936473:16,983,600...17,148,885
JBrowse link
G Rarres2 retinoic acid receptor responder 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936527:5,949,161...5,952,367
Ensembl chrNW_004936527:5,947,960...5,952,579
JBrowse link
G Sall1 spalt like transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936475:4,106,663...4,121,356
Ensembl chrNW_004936475:4,106,084...4,121,413
JBrowse link
G Sct secretin ISO RGD PMID:1711228 RGD:729899 NCBI chrNW_004936888:459,168...459,919
Ensembl chrNW_004936888:459,247...459,911
JBrowse link
G Stra6 signaling receptor and transporter of retinol STRA6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936471:33,224,174...33,245,076
Ensembl chrNW_004936471:33,224,859...33,245,030
JBrowse link
G Tgfb2 transforming growth factor beta 2 involved_in ISS
IEA
AgBase
Ensembl
GO_REF:0000024 GO_REF:0000107 NCBI chrNW_004936628:310,720...394,002
Ensembl chrNW_004936628:308,691...394,007
JBrowse link
G Tnf tumor necrosis factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936727:1,936,066...1,937,766
Ensembl chrNW_004936727:1,936,066...1,937,766
JBrowse link
embryonic digestive tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf10 fibroblast growth factor 10 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16618415)
(PMID:15017552)
Ensembl
MGI
PMID:15017552 PMID:16618415 GO_REF:0000107 NCBI chrNW_004936480:18,114,231...18,195,884
Ensembl chrNW_004936480:18,114,204...18,195,898
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO (PMID:21550054)
(PMID:16618415), (PMID:21492869)
MGI PMID:16618415 PMID:21492869 PMID:21550054 NCBI chrNW_004936486:10,506,680...10,606,272
Ensembl chrNW_004936486:10,507,097...10,602,019
JBrowse link
G Foxf1 forkhead box F1 involved_in ISO (PMID:19500772) DFLAT PMID:19500772 NCBI chrNW_004943883:4...1,756 JBrowse link
G Gata4 GATA binding protein 4 acts_upstream_of_or_within ISO (PMID:16127717) MGI PMID:16127717 NCBI chrNW_004936675:3,408,549...3,420,828 JBrowse link
G Gli3 GLI family zinc finger 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16247775) Ensembl
MGI
PMID:16247775 GO_REF:0000107 NCBI chrNW_004936478:17,129,922...17,403,630
Ensembl chrNW_004936478:17,126,911...17,403,011
JBrowse link
G Hlx H2.0 like homeobox involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:8557196) Ensembl
MGI
PMID:8557196 GO_REF:0000107 NCBI chrNW_004936650:1,416,825...1,422,595
Ensembl chrNW_004936650:1,416,812...1,422,588
JBrowse link
G Hnf1b HNF1 homeobox B involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:18635606) Ensembl
MGI
PMID:18635606 GO_REF:0000107 NCBI chrNW_004936490:649,551...702,448
Ensembl chrNW_004936490:649,546...702,672
JBrowse link
G Id2 inhibitor of DNA binding 2 involved_in ISO (PMID:16888283) UniProt PMID:16888283 NCBI chrNW_004936532:5,236,175...5,238,689
Ensembl chrNW_004936532:5,236,037...5,238,881
JBrowse link
G Ihh Indian hedgehog signaling molecule involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:10821773) Ensembl
MGI
PMID:10821773 GO_REF:0000107 NCBI chrNW_004936569:1,474,693...1,480,562
Ensembl chrNW_004936569:1,474,665...1,480,568
JBrowse link
G Nipbl NIPBL cohesin loading factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936518:4,870,686...5,041,099
Ensembl chrNW_004936518:4,869,546...4,969,450
JBrowse link
G Ovol2 ovo like zinc finger 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16423343) Ensembl
MGI
PMID:16423343 GO_REF:0000107 NCBI chrNW_004936485:2,096,495...2,128,002
Ensembl chrNW_004936485:2,096,495...2,128,540
JBrowse link
G Pdgfra platelet derived growth factor receptor alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936482:16,804,129...16,853,539
Ensembl chrNW_004936482:16,807,569...16,853,587
JBrowse link
G Pitx2 paired like homeodomain 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21550054) Ensembl
MGI
PMID:21550054 GO_REF:0000107 NCBI chrNW_004936563:1,713,294...1,732,431 JBrowse link
G Shh sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:10821773) Ensembl
MGI
PMID:10821773 GO_REF:0000107 NCBI chrNW_004936527:10,033,095...10,042,713
Ensembl chrNW_004936527:10,033,299...10,042,599
JBrowse link
G Shox2 SHOX homeobox 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16141225) Ensembl
MGI
PMID:16141225 GO_REF:0000107 NCBI chrNW_004936519:4,810,777...4,818,733
Ensembl chrNW_004936519:4,809,687...4,818,792
JBrowse link
G Six2 SIX homeobox 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936508:7,047,563...7,051,129
Ensembl chrNW_004936508:7,047,304...7,051,732
JBrowse link
G Sox11 SRY-box transcription factor 11 involved_in ISO (PMID:15254231) UniProt PMID:15254231 NCBI chrNW_004937107:203,120...207,185 JBrowse link
G Tcf21 transcription factor 21 ISO RGD PMID:11804032 RGD:727206 NCBI chrNW_004936560:1,733,903...1,736,895
Ensembl chrNW_004936560:1,733,903...1,736,890
JBrowse link
G Tcf7 transcription factor 7 acts_upstream_of_or_within ISO (PMID:15057272) MGI PMID:15057272 NCBI chrNW_004936647:1,096,726...1,125,753
Ensembl chrNW_004936647:1,097,019...1,125,729
JBrowse link
G Tcf7l2 transcription factor 7 like 2 acts_upstream_of_or_within ISO (PMID:15057272) MGI PMID:15057272 NCBI chrNW_004936486:3,473,877...3,660,565
Ensembl chrNW_004936486:3,473,843...3,660,576
JBrowse link
embryonic ectodermal digestive tract development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Vps52 VPS52 subunit of GARP complex involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:23142660) Ensembl
MGI
PMID:23142660 GO_REF:0000107 NCBI chrNW_004936476:25,594,168...25,612,044
Ensembl chrNW_004936476:25,594,114...25,612,066
JBrowse link
embryonic ectodermal digestive tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxf1 forkhead box F1 involved_in ISO (PMID:19500772) DFLAT PMID:19500772 NCBI chrNW_004943883:4...1,756 JBrowse link
embryonic foregut morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr2b activin A receptor type 2B involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:10921901) Ensembl
MGI
PMID:10921901 GO_REF:0000107 NCBI chrNW_004936473:27,816,366...27,822,555
Ensembl chrNW_004936473:27,815,399...27,822,476
JBrowse link
G Ctnnb1 catenin beta 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:18692041) Ensembl
MGI
PMID:18692041 GO_REF:0000107 NCBI chrNW_004936473:29,999,542...30,034,610
Ensembl chrNW_004936473:29,999,562...30,038,293
JBrowse link
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:18794329) Ensembl
MGI
PMID:18794329 GO_REF:0000107 NCBI chrNW_004936469:50,329,564...50,443,532
Ensembl chrNW_004936469:50,329,409...50,443,626
JBrowse link
G Foxf1 forkhead box F1 acts_upstream_of_or_within ISO (PMID:11493558) MGI PMID:11493558 NCBI chrNW_004943883:4...1,756 JBrowse link
G Foxp4 forkhead box P4 acts_upstream_of_or_within ISO (PMID:15361625) MGI PMID:15361625 NCBI chrNW_004936476:18,314,108...18,346,149
Ensembl chrNW_004936476:18,313,951...18,346,199
JBrowse link
G Gata4 GATA binding protein 4 acts_upstream_of_or_within ISO (PMID:9136933)
(PMID:9136932)
MGI PMID:9136932 PMID:9136933 NCBI chrNW_004936675:3,408,549...3,420,828 JBrowse link
G Nckap1 NCK associated protein 1 acts_upstream_of_or_within ISO (PMID:16831833) MGI PMID:16831833 NCBI chrNW_004936509:11,525,764...11,624,833
Ensembl chrNW_004936509:11,524,556...11,624,621
JBrowse link
G Shh sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:9731532) Ensembl
MGI
PMID:9731532 GO_REF:0000107 NCBI chrNW_004936527:10,033,095...10,042,713
Ensembl chrNW_004936527:10,033,299...10,042,599
JBrowse link
G Smad2 SMAD family member 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:15183723) Ensembl
MGI
PMID:15183723 GO_REF:0000107 NCBI chrNW_004936497:14,723,199...14,812,160
Ensembl chrNW_004936497:14,723,199...14,801,697
JBrowse link
G Smad3 SMAD family member 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:15183723) Ensembl
MGI
PMID:15183723 GO_REF:0000107 NCBI chrNW_004936471:27,080,662...27,185,861
Ensembl chrNW_004936471:27,080,575...27,189,793
JBrowse link
G Sox17 SRY-box transcription factor 17 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:18462699)
(PMID:19619492)
Ensembl
MGI
PMID:18462699 PMID:19619492 GO_REF:0000107 NCBI chrNW_004936496:1,248,582...1,251,406
Ensembl chrNW_004936496:1,248,577...1,251,430
JBrowse link
embryonic hindgut morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dact1 dishevelled binding antagonist of beta catenin 1 involved_in ISO (PMID:20145239) UniProt PMID:20145239 NCBI chrNW_004936495:3,017,029...3,026,759
Ensembl chrNW_004936495:3,017,150...3,025,684
JBrowse link
G Hoxa13 homeobox A13 ISO RGD PMID:17161201 RGD:1599527 NCBI chrNW_004936478:3,824,715...3,827,277
Ensembl chrNW_004936478:3,824,715...3,827,277
JBrowse link
G Hoxd13 homeobox D13 ISO RGD PMID:17161201 RGD:1599527 NCBI chrNW_004936509:5,579,846...5,581,651
Ensembl chrNW_004936509:5,579,843...5,581,651
JBrowse link
G Tcf7 transcription factor 7 acts_upstream_of_or_within ISO (PMID:15057272) MGI PMID:15057272 NCBI chrNW_004936647:1,096,726...1,125,753
Ensembl chrNW_004936647:1,097,019...1,125,729
JBrowse link
G Tcf7l2 transcription factor 7 like 2 acts_upstream_of_or_within ISO (PMID:15057272) MGI PMID:15057272 NCBI chrNW_004936486:3,473,877...3,660,565
Ensembl chrNW_004936486:3,473,843...3,660,576
JBrowse link
endodermal digestive tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO (PMID:21550054) MGI PMID:21550054 NCBI chrNW_004936486:10,506,680...10,606,272
Ensembl chrNW_004936486:10,507,097...10,602,019
JBrowse link
G Id2 inhibitor of DNA binding 2 involved_in ISO (PMID:16888283) UniProt PMID:16888283 NCBI chrNW_004936532:5,236,175...5,238,689
Ensembl chrNW_004936532:5,236,037...5,238,881
JBrowse link
G Pitx2 paired like homeodomain 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21550054) Ensembl
MGI
PMID:21550054 GO_REF:0000107 NCBI chrNW_004936563:1,713,294...1,732,431 JBrowse link
G Sox17 SRY-box transcription factor 17 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936496:1,248,582...1,251,406
Ensembl chrNW_004936496:1,248,577...1,251,430
JBrowse link
enteric smooth muscle cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ednrb endothelin receptor type B involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936511:3,446,864...3,478,434
Ensembl chrNW_004936511:3,446,839...3,478,434
JBrowse link
enterocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Yap1 Yes1 associated transcriptional regulator involved_in
acts_upstream_of
IEA
ISO
(PMID:17980593) Ensembl
MGI
PMID:17980593 GO_REF:0000107 NCBI chrNW_004936551:5,638,383...5,740,523
Ensembl chrNW_004936551:5,634,751...5,740,567
JBrowse link
foregut morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Notch1 notch receptor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16107537) Ensembl
MGI
PMID:16107537 GO_REF:0000107 NCBI chrNW_004936669:1,292,016...1,334,061
Ensembl chrNW_004936669:1,292,088...1,332,428
JBrowse link
hindgut development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ift172 intraflagellar transport 172 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21653639) Ensembl
MGI
PMID:21653639 GO_REF:0000107 NCBI chrNW_004936493:5,108,437...5,145,160
Ensembl chrNW_004936493:5,108,437...5,145,160
JBrowse link
hindgut morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli2 GLI family zinc finger 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:11485934) Ensembl
MGI
PMID:11485934 GO_REF:0000107 NCBI chrNW_004936469:49,616,552...49,788,760
Ensembl chrNW_004936469:49,617,095...49,673,213
JBrowse link
G Gli3 GLI family zinc finger 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:11485934) Ensembl
MGI
PMID:11485934 GO_REF:0000107 NCBI chrNW_004936478:17,129,922...17,403,630
Ensembl chrNW_004936478:17,126,911...17,403,011
JBrowse link
G Shh sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:11485934) Ensembl
MGI
PMID:11485934 GO_REF:0000107 NCBI chrNW_004936527:10,033,095...10,042,713
Ensembl chrNW_004936527:10,033,299...10,042,599
JBrowse link
G Wnt5a Wnt family member 5A involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:18804104) Ensembl
MGI
PMID:18804104 GO_REF:0000107 NCBI chrNW_004936473:6,031,627...6,052,211
Ensembl chrNW_004936473:6,029,976...6,052,159
JBrowse link
intestinal epithelial cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C1galt1 core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21383503) Ensembl
MGI
PMID:21383503 GO_REF:0000107 NCBI chrNW_004936585:2,650,868...2,682,152
Ensembl chrNW_004936585:2,650,872...2,682,142
JBrowse link
G Cdh1 cadherin 1 acts_upstream_of_or_within ISO (PMID:22766025) MGI PMID:22766025 NCBI chrNW_004936475:18,990,529...19,065,954
Ensembl chrNW_004936475:18,990,474...19,067,203
JBrowse link
G Dicer1 dicer 1, ribonuclease III acts_upstream_of_or_within ISO (PMID:21307095) MGI PMID:21307095 NCBI chrNW_004936846:528,768...584,599
Ensembl chrNW_004936846:532,972...575,689
JBrowse link
G Gsdmc gasdermin C involved_in ISO (PMID:17350798) UniProt PMID:17350798 NCBI chrNW_004936470:18,840,455...18,856,022
Ensembl chrNW_004936470:18,843,579...18,855,639
JBrowse link
G Il6st interleukin 6 cytokine family signal transducer involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936480:11,867,573...11,913,563
Ensembl chrNW_004936480:11,884,582...11,909,635
JBrowse link
G Klf5 KLF transcription factor 5 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:23266329) Ensembl
MGI
PMID:23266329 GO_REF:0000107 NCBI chrNW_004936511:7,806,714...7,824,833
Ensembl chrNW_004936511:7,806,708...7,824,992
JBrowse link
G Nkx3-2 NK3 homeobox 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21307095) Ensembl
MGI
PMID:21307095 GO_REF:0000107 NCBI chrNW_004936477:13,999,045...14,001,659
Ensembl chrNW_004936477:13,999,045...14,001,659
JBrowse link
G Prdm1 PR/SET domain 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21670299) Ensembl
MGI
PMID:21670299 GO_REF:0000107 NCBI chrNW_004936564:2,594,362...2,690,680
Ensembl chrNW_004936564:2,667,660...2,690,683
JBrowse link
G Spdef SAM pointed domain containing ETS transcription factor involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:19549527) Ensembl
MGI
PMID:19549527 GO_REF:0000107 NCBI chrNW_004936476:24,563,591...24,571,739
Ensembl chrNW_004936476:24,563,591...24,570,692
JBrowse link
G Src SRC proto-oncogene, non-receptor tyrosine kinase involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936561:3,826,802...3,844,406
Ensembl chrNW_004936561:3,825,787...3,844,483
JBrowse link
G Tigar TP53 induced glycolysis regulatory phosphatase involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:23726973) Ensembl
MGI
PMID:23726973 GO_REF:0000107 NCBI chrNW_004936606:4,518,525...4,540,109
Ensembl chrNW_004936606:4,518,584...4,540,114
JBrowse link
G Yap1 Yes1 associated transcriptional regulator involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936551:5,638,383...5,740,523
Ensembl chrNW_004936551:5,634,751...5,740,567
JBrowse link
G Yipf6 Yip1 domain family member 6 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:22802641) Ensembl
MGI
PMID:22802641 GO_REF:0000107 NCBI chrNW_004936777:169,794...193,155
Ensembl chrNW_004936777:169,080...193,231
JBrowse link
intestinal epithelial cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cbfa2t2 CBFA2/RUNX1 partner transcriptional co-repressor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936561:6,926,856...6,971,062
Ensembl chrNW_004936561:6,924,897...6,971,793
JBrowse link
G Cdx2 caudal type homeobox 2 involved_in ISO (PMID:22015720) UniProt PMID:22015720 NCBI chrNW_004936472:23,137,936...23,141,205 JBrowse link
G Gata4 GATA binding protein 4 acts_upstream_of_or_within ISO (PMID:9566909) MGI PMID:9566909 NCBI chrNW_004936675:3,408,549...3,420,828 JBrowse link
G Gata5 GATA binding protein 5 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:9566909) MGI
Ensembl
PMID:9566909 GO_REF:0000107 NCBI chrNW_004936514:10,061,675...10,070,541
Ensembl chrNW_004936514:10,061,675...10,070,541
JBrowse link
G Gata6 GATA binding protein 6 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:9566909) MGI
Ensembl
PMID:9566909 GO_REF:0000107 NCBI chrNW_004936550:1,814,336...1,844,399
Ensembl chrNW_004936550:1,814,336...1,844,399
JBrowse link
G Ptk6 protein tyrosine kinase 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936514:10,826,013...10,833,170
Ensembl chrNW_004936514:10,826,724...10,832,954
JBrowse link
G Sav1 salvador family WW domain containing protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:18369314) Ensembl
MGI
PMID:18369314 GO_REF:0000107 NCBI chrNW_004936495:14,955,234...14,977,720
Ensembl chrNW_004936495:14,954,542...14,976,580
JBrowse link
G Sox9 SRY-box transcription factor 9 involved_in
acts_upstream_of
IEA
ISO
(PMID:17681175) Ensembl
MGI
PMID:17681175 GO_REF:0000107 NCBI chrNW_004936655:1,849,044...1,852,648
Ensembl chrNW_004936655:1,847,272...1,852,705
JBrowse link
G Yap1 Yes1 associated transcriptional regulator involved_in
acts_upstream_of
IEA
ISO
(PMID:17980593) Ensembl
MGI
PMID:17980593 GO_REF:0000107 NCBI chrNW_004936551:5,638,383...5,740,523
Ensembl chrNW_004936551:5,634,751...5,740,567
JBrowse link
intestinal epithelial cell maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdkn1a cyclin dependent kinase inhibitor 1A ISO RGD PMID:20466941 RGD:8662316 NCBI chrNW_004936476:22,717,308...22,725,127
Ensembl chrNW_004936476:22,717,260...22,725,182
JBrowse link
G Fzd5 frizzled class receptor 5 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:15778706) Ensembl
MGI
PMID:15778706 GO_REF:0000107 NCBI chrNW_004936631:3,909,046...3,915,939
Ensembl chrNW_004936631:3,911,693...3,915,560
JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:20808783) Ensembl
MGI
PMID:20808783 GO_REF:0000107 NCBI chrNW_004936495:5,770,988...5,816,157
Ensembl chrNW_004936495:5,770,669...5,816,157
JBrowse link
G Hoxa5 homeobox A5 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:10564089) Ensembl
MGI
PMID:10564089 GO_REF:0000107 NCBI chrNW_004936478:3,768,757...3,771,850
Ensembl chrNW_004936478:3,769,258...3,771,840
JBrowse link
G Tmigd1 transmembrane and immunoglobulin domain containing 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:33129760) Ensembl
MGI
PMID:33129760 GO_REF:0000107 NCBI chrNW_004936538:6,317,802...6,331,974
Ensembl chrNW_004936538:6,318,046...6,331,974
JBrowse link
G Tyms thymidylate synthetase ISO RGD PMID:1260861 RGD:2317427 NCBI chrNW_004936550:33,797...42,233
Ensembl chrNW_004936550:34,048...41,840
JBrowse link
midgut development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a1 aldehyde dehydrogenase 1 family member A1 ISO RGD PMID:15964596 RGD:1643113 NCBI chrNW_004936503:8,869,073...8,953,726
Ensembl chrNW_004936503:8,868,961...8,918,532
JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family member A2 ISO RGD PMID:15964596 RGD:1643113 NCBI chrNW_004936471:19,175,997...19,263,335
Ensembl chrNW_004936471:19,175,992...19,263,335
JBrowse link
G Arg2 arginase 2 ISO RGD PMID:10050048 RGD:4144052 NCBI chrNW_004936495:11,004,296...11,045,467
Ensembl chrNW_004936495:11,004,176...11,045,472
JBrowse link
G Asl argininosuccinate lyase ISO RGD PMID:9544996 RGD:4139911 NCBI chrNW_004936543:7,688,788...7,699,842
Ensembl chrNW_004936543:7,688,741...7,699,851
JBrowse link
G Ass1 argininosuccinate synthase 1 ISO RGD PMID:9544996 RGD:4139911 NCBI chrNW_004936487:17,482,307...17,527,407
Ensembl chrNW_004936487:17,486,826...17,527,435
JBrowse link
G Cps1 carbamoyl-phosphate synthase 1 ISO RGD PMID:9544996 RGD:4139911 NCBI chrNW_004936586:5,739,038...5,850,317
Ensembl chrNW_004936586:5,739,337...5,850,312
JBrowse link
G Ctnnb1 catenin beta 1 ISO RGD PMID:17356920 RGD:2289844 NCBI chrNW_004936473:29,999,542...30,034,610
Ensembl chrNW_004936473:29,999,562...30,038,293
JBrowse link
G Dab1 DAB adaptor protein 1 ISO RGD PMID:19946030 RGD:2317766 NCBI chrNW_004936522:3,498,395...4,612,560
Ensembl chrNW_004936522:4,333,647...4,616,044
JBrowse link
G Egfr epidermal growth factor receptor ISO RGD PMID:7926492 RGD:10395256 NCBI chrNW_004936678:365,005...560,546
Ensembl chrNW_004936678:365,834...436,528
JBrowse link
G Foxf1 forkhead box F1 involved_in ISO (PMID:19500772) DFLAT PMID:19500772 NCBI chrNW_004943883:4...1,756 JBrowse link
G Hmgcs2 3-hydroxy-3-methylglutaryl-CoA synthase 2 ISO RGD PMID:8620869 RGD:2326125 NCBI chrNW_004936627:4,451,847...4,473,163
Ensembl chrNW_004936627:4,451,823...4,473,223
JBrowse link
G Otc ornithine transcarbamylase ISO RGD PMID:9544996 RGD:4139911 NCBI chrNW_004936502:5,234,253...5,291,891
Ensembl chrNW_004936502:5,234,253...5,291,891
JBrowse link
G Reg1a regenerating family member 1 alpha ISO RGD PMID:7720628 RGD:9850133 NCBI chrNW_004936556:4,873,331...4,875,608
Ensembl chrNW_004936556:4,873,331...4,875,608
JBrowse link
G Reln reelin ISO RGD PMID:19946030 RGD:2317766 NCBI chrNW_004936479:19,628,488...20,088,278
Ensembl chrNW_004936479:19,628,940...20,087,250
JBrowse link
G Rxra retinoid X receptor alpha ISO RGD PMID:15964596 RGD:1643113 NCBI chrNW_004936669:2,735,111...2,763,060
Ensembl chrNW_004936669:2,738,448...2,763,070
JBrowse link
G Smo smoothened, frizzled class receptor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936579:5,893,064...5,917,021
Ensembl chrNW_004936579:5,892,542...5,917,281
JBrowse link
G Wnt5a Wnt family member 5A involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:19100728) Ensembl
MGI
PMID:19100728 GO_REF:0000107 NCBI chrNW_004936473:6,031,627...6,052,211
Ensembl chrNW_004936473:6,029,976...6,052,159
JBrowse link
negative regulation of stomach neuroendocrine cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hes1 hes family bHLH transcription factor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:18173746) Ensembl
MGI
PMID:18173746 GO_REF:0000107 NCBI chrNW_004936711:640,002...642,580
Ensembl chrNW_004936711:639,905...642,622
JBrowse link
positive regulation of intestinal epithelial cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC101961439 twinfilin-2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936529:3,538,813...3,555,562
Ensembl chrNW_004936529:3,538,862...3,555,593
JBrowse link
post-embryonic digestive tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nkx2-3 NK2 homeobox 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:10926756) Ensembl
MGI
PMID:10926756 GO_REF:0000107 NCBI chrNW_004936636:529,669...532,237
Ensembl chrNW_004936636:529,669...532,237
JBrowse link
posterior midgut development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ednrb endothelin receptor type B involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:8582288) Ensembl
MGI
PMID:8582288 GO_REF:0000107 NCBI chrNW_004936511:3,446,864...3,478,434
Ensembl chrNW_004936511:3,446,839...3,478,434
JBrowse link
stomach development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ext1 exostosin glycosyltransferase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:29700203) Ensembl
MGI
PMID:29700203 GO_REF:0000107 NCBI chrNW_004936470:28,303,213...28,566,470
Ensembl chrNW_004936470:28,303,828...28,566,118
JBrowse link
G Kcnq1 potassium voltage-gated channel subfamily Q member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004936794:707,122...994,206
Ensembl chrNW_004936794:707,119...994,778
JBrowse link
stomach neuroendocrine cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl1 achaete-scute family bHLH transcription factor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:18173746) Ensembl
MGI
PMID:18173746 GO_REF:0000107 NCBI chrNW_004936492:11,315,929...11,317,166
Ensembl chrNW_004936492:11,316,417...11,317,166
JBrowse link
G Hes1 hes family bHLH transcription factor 1 involved_in
acts_upstream_of
IEA
ISO
(PMID:18173746) Ensembl
MGI
PMID:18173746 GO_REF:0000107 NCBI chrNW_004936711:640,002...642,580
Ensembl chrNW_004936711:639,905...642,622
JBrowse link
visceral mesoderm-endoderm interaction involved in midgut development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxl1 forkhead box L1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:9203584) Ensembl
MGI
PMID:9203584 GO_REF:0000107 NCBI chrNW_004936641:2,226,489...2,227,613
Ensembl chrNW_004936641:2,226,550...2,227,578
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16018
    multicellular organismal process 7446
      multicellular organism development 4869
        tube development 1200
          digestive tract development 164
            determination of digestive tract left/right asymmetry + 7
            digestive tract mesoderm development 1
            digestive tract morphogenesis + 55
            ectodermal digestive tract development + 2
            embryonic digestive tract development + 37
            enteric smooth muscle cell differentiation 1
            hindgut development + 10
            intestinal epithelial cell differentiation + 28
            midgut development + 19
            pharynx development + 4
            stomach development + 5
Path 2
Term Annotations click to browse term
  biological_process 16018
    developmental process 6388
      anatomical structure development 6008
        multicellular organism development 4869
          system development 4236
            digestive system development 178
              digestive tract development 164
                determination of digestive tract left/right asymmetry + 7
                digestive tract mesoderm development 1
                digestive tract morphogenesis + 55
                ectodermal digestive tract development + 2
                embryonic digestive tract development + 37
                enteric smooth muscle cell differentiation 1
                hindgut development + 10
                intestinal epithelial cell differentiation + 28
                midgut development + 19
                pharynx development + 4
                stomach development + 5
paths to the root