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ONTOLOGY REPORT - ANNOTATIONS


Term:digestive tract development
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Accession:GO:0048565 term browser browse the term
Definition:The process whose specific outcome is the progression of the digestive tract over time, from its formation to the mature structure. The digestive tract is the anatomical structure through which food passes and is processed.
Synonyms:narrow_synonym: intestinal development;   intestine development
 broad_synonym: gut development


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digestive tract development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alx4 ALX homeobox 4 acts_upstream_of_or_within ISO (PMID:9268572) MGI PMID:9268572 NCBI chrNW_004624767:3,770,755...3,808,511
Ensembl chrNW_004624767:3,770,762...3,805,323
JBrowse link
G Cckbr cholecystokinin B receptor involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:15476751) Ensembl
MGI
PMID:15476751 GO_REF:0000107 NCBI chrNW_004624817:7,744,422...7,754,870
Ensembl chrNW_004624817:7,743,865...7,755,453
JBrowse link
G Cd36 CD36 molecule (CD36 blood group) ISO RGD PMID:11595646 RGD:628450 NCBI chrNW_004624739:29,341,620...29,441,232
Ensembl chrNW_004624739:29,407,568...29,441,333
JBrowse link
G Chd8 chromodomain helicase DNA binding protein 8 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:27602517) Ensembl
MGI
PMID:27602517 GO_REF:0000107 NCBI chrNW_004624825:7,411,629...7,475,111
Ensembl chrNW_004624825:7,411,629...7,474,526
JBrowse link
G Cldn18 claudin 18 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:22437732) Ensembl
MGI
PMID:22437732 GO_REF:0000107 NCBI chrNW_004624730:14,500,379...14,522,047
Ensembl chrNW_004624730:14,489,585...14,522,042
JBrowse link
G Clmp CXADR like membrane protein involved_in ISO (PMID:22155368) UniProt PMID:22155368 NCBI chrNW_004624880:1,965,264...2,063,241
Ensembl chrNW_004624880:1,965,476...2,059,420
JBrowse link
G Cobl cordon-bleu WH2 repeat protein involved_in ISO (PMID:7586755) BHF-UCL PMID:7586755 NCBI chrNW_004624740:3,332,977...3,399,915 JBrowse link
G Col3a1 collagen type III alpha 1 chain acts_upstream_of_or_within
involved_in
ISO (PMID:9050868)
(PMID:20587693)
MGI PMID:9050868 PMID:20587693 NCBI chrNW_004624899:1,192,078...1,230,528
Ensembl chrNW_004624899:1,192,360...1,230,404
JBrowse link
G Dchs1 dachsous cadherin-related 1 acts_upstream_of_or_within ISO (PMID:21303848) MGI PMID:21303848 NCBI chrNW_004624817:8,111,714...8,147,699
Ensembl chrNW_004624817:8,111,718...8,134,342
JBrowse link
G Dicer1 dicer 1, ribonuclease III acts_upstream_of_or_within ISO (PMID:21307095) MGI PMID:21307095 NCBI chrNW_004624734:7,604,049...7,681,481
Ensembl chrNW_004624734:7,608,273...7,651,819
JBrowse link
G Fat4 FAT atypical cadherin 4 acts_upstream_of_or_within ISO (PMID:21303848) MGI PMID:21303848 NCBI chrNW_004624777:6,095,166...6,293,142
Ensembl chrNW_004624777:6,095,643...6,292,980
JBrowse link
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:15234214) MGI
Ensembl
PMID:15234214 GO_REF:0000107 NCBI chrNW_004624759:10,904,626...10,983,509
Ensembl chrNW_004624759:10,904,989...10,983,574
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO (PMID:15234214) MGI PMID:15234214 NCBI chrNW_004624737:25,052,698...25,158,346
Ensembl chrNW_004624737:25,052,606...25,158,529
JBrowse link
G Foxf1 forkhead box F1 involved_in ISO (PMID:19500772) DFLAT PMID:19500772 NCBI chrNW_004624746:2,599,211...2,603,031
Ensembl chrNW_004624746:2,599,106...2,603,336
JBrowse link
G Hrh2 histamine receptor H2 acts_upstream_of_or_within ISO (PMID:15476751)
(PMID:10862789)
MGI PMID:10862789 PMID:15476751 NCBI chrNW_004624733:14,261,799...14,308,320
Ensembl chrNW_004624733:14,260,720...14,308,217
JBrowse link
G Kit KIT proto-oncogene, receptor tyrosine kinase involved_in ISO (PMID:15067126) UniProt PMID:15067126 NCBI chrNW_004624761:14,733,912...14,831,428 JBrowse link
G Lgr4 leucine rich repeat containing G protein-coupled receptor 4 acts_upstream_of_or_within ISO (PMID:24680895) MGI PMID:24680895 NCBI chrNW_004624766:17,110,809...17,147,585
Ensembl chrNW_004624766:17,112,909...17,147,785
JBrowse link
G LOC101707509 cytochrome P450 1A1 ISO RGD PMID:12162855 RGD:727721 NCBI chrNW_004627988:7...1,323 JBrowse link
G Mixl1 Mix paired-like homeobox acts_upstream_of_or_within ISO (PMID:12117810) MGI PMID:12117810 NCBI chrNW_004624807:322,723...325,089
Ensembl chrNW_004624807:322,723...326,149
JBrowse link
G Muc4 mucin 4, cell surface associated ISO RGD PMID:15389518 RGD:2303738 NCBI chrNW_004624730:61,153,753...61,176,859 JBrowse link
G Myocd myocardin acts_upstream_of_or_within ISO (PMID:21357509) MGI PMID:21357509 NCBI chrNW_004624877:618,789...647,471 JBrowse link
G Nipbl NIPBL cohesin loading factor involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624759:17,899,152...18,078,213
Ensembl chrNW_004624759:17,899,152...17,999,295
JBrowse link
G Nkx2-2 NK2 homeobox 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:18987169) Ensembl
MGI
PMID:18987169 GO_REF:0000107 NCBI chrNW_004624741:21,857,911...21,860,128
Ensembl chrNW_004624741:21,852,205...21,860,040
JBrowse link
G Nkx2-3 NK2 homeobox 3 acts_upstream_of_or_within ISO (PMID:10207146)
(PMID:10926756)
MGI PMID:10207146 PMID:10926756 NCBI chrNW_004624737:11,253,490...11,256,974
Ensembl chrNW_004624737:11,253,483...11,256,232
JBrowse link
G Nkx2-6 NK2 homeobox 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624758:18,908,988...18,914,794
Ensembl chrNW_004624758:18,911,010...18,914,001
JBrowse link
G Npr2 natriuretic peptide receptor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624868:4,974,690...4,993,886
Ensembl chrNW_004624868:4,974,810...4,993,817
JBrowse link
G Nr1h3 nuclear receptor subfamily 1 group H member 3 ISO intestine RGD PMID:17341476 RGD:401827282 NCBI chrNW_004624767:1,459,601...1,473,224
Ensembl chrNW_004624767:1,459,601...1,467,795
JBrowse link
G Nr1h4 nuclear receptor subfamily 1 group H member 4 ISO RGD PMID:11984532 RGD:1625207 NCBI chrNW_004624750:7,222,306...7,303,809
Ensembl chrNW_004624750:7,219,251...7,303,834
JBrowse link
G Nts neurotensin ISO RGD PMID:8571204 RGD:9743850 NCBI chrNW_004624837:5,035,237...5,045,560
Ensembl chrNW_004624837:5,035,159...5,045,651
JBrowse link
G Oxtr oxytocin receptor ISO RGD PMID:19003903 RGD:2303961 NCBI chrNW_004624731:3,367,645...3,384,815
Ensembl chrNW_004624731:3,370,701...3,385,640
JBrowse link
G Pdgfa platelet derived growth factor subunit A involved_in
acts_upstream_of_or_within
ISO (PMID:10903171)
(PMID:23938297)
UniProt
MGI
PMID:10903171 PMID:23938297 NCBI chrNW_004624740:26,172,808...26,191,557
Ensembl chrNW_004624740:26,169,064...26,188,866
JBrowse link
G Pdgfc platelet derived growth factor C acts_upstream_of_or_within ISO (PMID:23938297) MGI PMID:23938297 NCBI chrNW_004624848:1,484,904...1,674,410
Ensembl chrNW_004624848:1,484,947...1,674,641
JBrowse link
G Pdx1 pancreatic and duodenal homeobox 1 acts_upstream_of_or_within ISO (PMID:19619492) MGI PMID:19619492 NCBI chrNW_004624776:10,591,855...10,596,738
Ensembl chrNW_004624776:10,591,855...10,596,676
JBrowse link
G Pkd1 polycystin 1, transient receptor potential channel interacting involved_in ISO (PMID:11891195) UniProt PMID:11891195 NCBI chrNW_004624913:118,520...166,939
Ensembl chrNW_004624913:118,733...165,859
JBrowse link
G Rb1 RB transcriptional corepressor 1 acts_upstream_of_or_within ISO (PMID:17257418) MGI PMID:17257418 NCBI chrNW_004624748:6,358,588...6,533,217
Ensembl chrNW_004624748:6,358,180...6,533,249
JBrowse link
G Rcbtb2 RCC1 and BTB domain containing protein 2 acts_upstream_of_or_within ISO (PMID:26291700) MGI PMID:26291700 NCBI chrNW_004624748:6,305,821...6,355,511
Ensembl chrNW_004624748:6,311,636...6,355,591
JBrowse link
G Slc4a2 solute carrier family 4 member 2 ISO RGD PMID:8770049 RGD:9999233 NCBI chrNW_004624800:5,545,380...5,560,789 JBrowse link
G Smo smoothened, frizzled class receptor acts_upstream_of_or_within ISO (PMID:19619492) MGI PMID:19619492 NCBI chrNW_004624783:7,012,385...7,039,302
Ensembl chrNW_004624783:7,011,899...7,039,921
JBrowse link
G Tgfb1 transforming growth factor beta 1 ISO RGD PMID:12815632 RGD:2302031 NCBI chrNW_004624907:162,567...175,696
Ensembl chrNW_004624907:161,569...176,605
JBrowse link
G Tgfb2 transforming growth factor beta 2 ISO RGD PMID:12815632 RGD:2302031 NCBI chrNW_004624835:2,363,059...2,436,536
Ensembl chrNW_004624835:2,363,139...2,437,643
JBrowse link
G Tgfb3 transforming growth factor beta 3 ISO RGD PMID:12815632 RGD:2302031 NCBI chrNW_004624734:25,717,011...25,739,942
Ensembl chrNW_004624734:25,716,972...25,739,199
JBrowse link
G Tgfbr1 transforming growth factor beta receptor 1 ISO RGD PMID:12815632 RGD:2302031 NCBI chrNW_004624825:1,773,158...1,899,120
Ensembl chrNW_004624825:1,839,178...1,899,156
JBrowse link
G Tgfbr2 transforming growth factor beta receptor 2 ISO RGD PMID:12815632 RGD:2302031 NCBI chrNW_004624788:8,447,679...8,535,821
Ensembl chrNW_004624788:8,447,542...8,535,959
JBrowse link
G Thra thyroid hormone receptor alpha ISO RGD PMID:17496154 RGD:2314319 NCBI chrNW_004624795:3,109,663...3,132,494
Ensembl chrNW_004624795:3,108,854...3,132,464
JBrowse link
G Tk1 thymidine kinase 1 ISO RGD PMID:6701043 RGD:2317231 NCBI chrNW_004624801:7,685,003...7,692,949
Ensembl chrNW_004624801:7,685,017...7,692,872
JBrowse link
chordate pharynx development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chrd chordin involved_in ISO (PMID:12810603) MGI PMID:12810603 NCBI chrNW_004624730:72,201,239...72,209,843
Ensembl chrNW_004624730:72,201,644...72,209,843
JBrowse link
G Crkl CRK like proto-oncogene, adaptor protein acts_upstream_of_or_within ISO (PMID:25565927) MGI PMID:25565927 NCBI chrNW_004624945:734,532...767,184
Ensembl chrNW_004624945:734,532...767,168
JBrowse link
G Ednrb endothelin receptor type B involved_in ISO (PMID:18199583) MGI PMID:18199583 NCBI chrNW_004624751:22,459,613...22,491,409
Ensembl chrNW_004624751:22,459,584...22,491,606
JBrowse link
G Foxe1 forkhead box E1 involved_in ISO (PMID:15494458) UniProt PMID:15494458 NCBI chrNW_004624825:2,979,447...2,981,412
Ensembl chrNW_004624825:2,980,176...2,981,303
JBrowse link
cloacal septation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tp63 tumor protein p63 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:12368184) MGI
Ensembl
PMID:12368184 GO_REF:0000107 NCBI chrNW_004624730:67,283,444...67,489,808
Ensembl chrNW_004624730:67,286,160...67,489,670
JBrowse link
G Wnt11 Wnt family member 11 involved_in ISO (PMID:9757009) UniProt PMID:9757009 NCBI chrNW_004624817:931,686...952,474
Ensembl chrNW_004624817:932,970...952,326
JBrowse link
determination of digestive tract left/right asymmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccdc39 coiled-coil domain 39 molecular ruler complex subunit involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624730:58,436,427...58,471,926
Ensembl chrNW_004624730:58,436,469...58,471,799
JBrowse link
G Ccdc40 coiled-coil domain 40 molecular ruler complex subunit involved_in ISO (PMID:22693285) BHF-UCL PMID:22693285 NCBI chrNW_004624801:9,160,852...9,217,033
Ensembl chrNW_004624801:9,160,805...9,217,756
JBrowse link
G Dnaaf1 dynein axonemal assembly factor 1 involved_in ISO (PMID:19944405) BHF-UCL PMID:19944405 NCBI chrNW_004624746:3,412,888...3,441,710 JBrowse link
G Dnaaf19 dynein axonemal assembly factor 19 involved_in ISO (PMID:22581229) BHF-UCL PMID:22581229 NCBI chrNW_004624795:404,102...407,025
Ensembl chrNW_004624795:404,068...406,979
JBrowse link
G Megf8 multiple EGF like domains 8 involved_in
acts_upstream_of_or_within
ISS
ISO
(PMID:18043505) UniProt
MGI
PMID:18043505 GO_REF:0000024 NCBI chrNW_004624907:397,008...438,091
Ensembl chrNW_004624907:397,008...438,091
JBrowse link
G Zic3 Zic family member 3 involved_in ISO (PMID:9354794) BHF-UCL PMID:9354794 NCBI chrNW_004624808:9,201,025...9,212,192
Ensembl chrNW_004624808:9,200,952...9,212,093
JBrowse link
determination of intestine left/right asymmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nphp3 nephrocystin 3 involved_in ISO (PMID:20007846) BHF-UCL PMID:20007846 NCBI chrNW_004624730:8,824,370...8,874,614
Ensembl chrNW_004624730:8,816,643...8,874,649
JBrowse link
determination of stomach left/right asymmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nphp3 nephrocystin 3 involved_in ISO (PMID:18371931) BHF-UCL PMID:18371931 NCBI chrNW_004624730:8,824,370...8,874,614
Ensembl chrNW_004624730:8,816,643...8,874,649
JBrowse link
digestive tract mesoderm development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Shh sonic hedgehog signaling molecule ISO RGD PMID:9368764 RGD:2306312 NCBI chrNW_004624800:2,202,986...2,215,309
Ensembl chrNW_004624800:2,203,393...2,212,068
JBrowse link
digestive tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agr2 anterior gradient 2, protein disulphide isomerase family member involved_in ISO (PMID:25666625) UniProt PMID:25666625 NCBI chrNW_004624739:13,428,049...13,440,949
Ensembl chrNW_004624739:13,428,130...13,442,070
JBrowse link
G Bcl2 BCL2 apoptosis regulator acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:7812968) MGI
Ensembl
PMID:7812968 GO_REF:0000107 NCBI chrNW_004624792:8,854,345...9,032,727
Ensembl chrNW_004624792:8,859,522...9,031,344
JBrowse link
G Egfr epidermal growth factor receptor acts_upstream_of_or_within ISO (PMID:7618084) MGI PMID:7618084 NCBI chrNW_004624740:584,133...713,205
Ensembl chrNW_004624740:589,606...713,271
JBrowse link
G Ephb3 EPH receptor B3 involved_in ISO (PMID:12408869) UniProt PMID:12408869 NCBI chrNW_004624730:71,964,337...71,983,021
Ensembl chrNW_004624730:71,965,108...71,982,593
JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 acts_upstream_of_or_within ISO (PMID:19407216) MGI PMID:19407216 NCBI chrNW_004624755:25,633,690...25,647,361
Ensembl chrNW_004624755:25,635,165...25,646,932
JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:20808783) MGI
Ensembl
PMID:20808783 GO_REF:0000107 NCBI chrNW_004624734:39,414,458...39,471,705
Ensembl chrNW_004624734:39,411,824...39,471,705
JBrowse link
G Il18 interleukin 18 ISO RGD PMID:21088234 RGD:4889157 NCBI chrNW_004624784:7,294,286...7,312,959
Ensembl chrNW_004624784:7,294,183...7,304,687
JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO (PMID:11311163) MGI PMID:11311163 NCBI chrNW_004624754:4,557,407...4,564,580
Ensembl chrNW_004624754:4,557,952...4,564,644
JBrowse link
G Npr2 natriuretic peptide receptor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624868:4,974,690...4,993,886
Ensembl chrNW_004624868:4,974,810...4,993,817
JBrowse link
G Sfrp1 secreted frizzled related protein 1 acts_upstream_of_or_within ISO (PMID:19300477) MGI PMID:19300477 NCBI chrNW_004624780:2,133,105...2,172,301
Ensembl chrNW_004624780:2,132,960...2,174,508
JBrowse link
G Sfrp2 secreted frizzled related protein 2 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:19300477) MGI
Ensembl
PMID:19300477 GO_REF:0000107 NCBI chrNW_004624858:5,052,736...5,061,495
Ensembl chrNW_004624858:5,052,518...5,061,591
JBrowse link
G Sfrp5 secreted frizzled related protein 5 acts_upstream_of_or_within
involved_in
ISO (PMID:19300477)
(PMID:18981481)
MGI
BHF-UCL
PMID:18981481 PMID:19300477 NCBI chrNW_004624737:9,395,589...9,401,600
Ensembl chrNW_004624737:9,395,393...9,401,173
JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO (PMID:9731532) MGI PMID:9731532 NCBI chrNW_004624800:2,202,986...2,215,309
Ensembl chrNW_004624800:2,203,393...2,212,068
JBrowse link
G Sox10 SRY-box transcription factor 10 acts_upstream_of_or_within ISO (PMID:15843399), (PMID:6512238) MGI PMID:6512238 PMID:15843399 NCBI chrNW_004624752:9,965,015...9,976,244
Ensembl chrNW_004624752:9,965,756...9,973,777
JBrowse link
G Stra6 signaling receptor and transporter of retinol STRA6 involved_in ISO (PMID:17273977) DFLAT PMID:17273977 NCBI chrNW_004624781:304,890...413,655
Ensembl chrNW_004624781:389,481...413,728
JBrowse link
G Stx2 syntaxin 2 ISO RGD PMID:12464668 RGD:1298909 NCBI chrNW_004624747:27,247,947...27,272,698
Ensembl chrNW_004624747:27,249,608...27,272,728
JBrowse link
G Tp73 tumor protein p73 acts_upstream_of_or_within ISO (PMID:10716451) MGI PMID:10716451 NCBI chrNW_004624818:6,775,588...6,817,187
Ensembl chrNW_004624818:6,775,599...6,809,289
JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO (PMID:19300477) MGI PMID:19300477 NCBI chrNW_004624794:841,302...867,717
Ensembl chrNW_004624794:841,247...867,708
JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO (PMID:19300477) MGI PMID:19300477 NCBI chrNW_004624822:1,824,378...1,843,599
Ensembl chrNW_004624822:1,825,238...1,841,288
JBrowse link
embryonic digestive tract development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase acts_upstream_of_or_within ISO (PMID:7670465) MGI PMID:7670465 NCBI chrNW_004624790:9,809,550...9,829,199
Ensembl chrNW_004624790:9,809,492...9,829,883
JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family member A2 acts_upstream_of_or_within ISO (PMID:16806149) MGI PMID:16806149 NCBI chrNW_004624781:13,756,469...13,845,253
Ensembl chrNW_004624781:13,756,390...13,845,479
JBrowse link
G Cxcl8 C-X-C motif chemokine ligand 8 involved_in ISO (PMID:20875417) DFLAT PMID:20875417 NCBI chrNW_004624730:1,744,097...1,747,206
Ensembl chrNW_004624730:1,743,916...1,747,293
JBrowse link
G Fgf10 fibroblast growth factor 10 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16308329) Ensembl
MGI
PMID:16308329 GO_REF:0000107 NCBI chrNW_004624759:10,904,626...10,983,509
Ensembl chrNW_004624759:10,904,989...10,983,574
JBrowse link
G Fgf9 fibroblast growth factor 9 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:16308329) Ensembl
MGI
PMID:16308329 GO_REF:0000107 NCBI chrNW_004624776:16,022,118...16,055,413
Ensembl chrNW_004624776:16,019,835...16,055,498
JBrowse link
G Foxf1 forkhead box F1 acts_upstream_of_or_within ISO (PMID:16439479) MGI PMID:16439479 NCBI chrNW_004624746:2,599,211...2,603,031
Ensembl chrNW_004624746:2,599,106...2,603,336
JBrowse link
G Foxf2 forkhead box F2 acts_upstream_of_or_within ISO (PMID:16439479) MGI PMID:16439479 NCBI chrNW_004624756:23,209,402...23,213,817
Ensembl chrNW_004624756:23,209,390...23,213,802
JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO (PMID:10693670) MGI PMID:10693670 NCBI chrNW_004624732:24,159,407...24,381,495
Ensembl chrNW_004624732:24,159,312...24,328,452
JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (PMID:10693670) MGI PMID:10693670 NCBI chrNW_004624740:18,961,395...19,238,760
Ensembl chrNW_004624740:18,975,596...19,235,900
JBrowse link
G Myb MYB proto-oncogene, transcription factor acts_upstream_of_or_within ISO (PMID:10523863) MGI PMID:10523863 NCBI chrNW_004624886:2,455,704...2,489,593 JBrowse link
G Pcsk5 proprotein convertase subtilisin/kexin type 5 involved_in ISO (PMID:18519639) BHF-UCL PMID:18519639 NCBI chrNW_004624811:3,453,218...3,862,970 JBrowse link
G Pkdcc protein kinase domain containing, cytoplasmic involved_in ISO (PMID:19097194) UniProt PMID:19097194 NCBI chrNW_004624738:23,759,382...23,768,743
Ensembl chrNW_004624738:23,759,398...23,771,639
JBrowse link
G Rarb retinoic acid receptor beta involved_in ISO (PMID:19443732) DFLAT PMID:19443732 NCBI chrNW_004624788:2,738,341...3,493,140
Ensembl chrNW_004624788:3,257,697...3,493,132
JBrowse link
G Rarres2 retinoic acid receptor responder 2 involved_in ISO (PMID:19443732) DFLAT PMID:19443732 NCBI chrNW_004624800:6,138,236...6,140,922
Ensembl chrNW_004624800:6,139,006...6,140,679
JBrowse link
G Sall1 spalt like transcription factor 1 involved_in ISO (PMID:18280297) UniProt PMID:18280297 NCBI chrNW_004624757:5,572,510...5,587,623
Ensembl chrNW_004624757:5,572,528...5,587,617
JBrowse link
G Sct secretin ISO RGD PMID:1711228 RGD:729899 NCBI chrNW_004624766:21,841,994...21,842,754
Ensembl chrNW_004624766:21,842,014...21,842,683
JBrowse link
G Stra6 signaling receptor and transporter of retinol STRA6 involved_in ISO (PMID:17273977) DFLAT PMID:17273977 NCBI chrNW_004624781:304,890...413,655
Ensembl chrNW_004624781:389,481...413,728
JBrowse link
G Tgfb2 transforming growth factor beta 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624835:2,363,059...2,436,536
Ensembl chrNW_004624835:2,363,139...2,437,643
JBrowse link
G Tnf tumor necrosis factor involved_in ISO (PMID:20875417) DFLAT PMID:20875417 NCBI chrNW_004624754:24,623,059...24,625,647
Ensembl chrNW_004624754:24,623,425...24,625,531
JBrowse link
embryonic digestive tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf10 fibroblast growth factor 10 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:15017552)
(PMID:16618415)
Ensembl
MGI
PMID:15017552 PMID:16618415 GO_REF:0000107 NCBI chrNW_004624759:10,904,626...10,983,509
Ensembl chrNW_004624759:10,904,989...10,983,574
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO (PMID:21550054)
(PMID:16618415), (PMID:21492869)
MGI PMID:16618415 PMID:21492869 PMID:21550054 NCBI chrNW_004624737:25,052,698...25,158,346
Ensembl chrNW_004624737:25,052,606...25,158,529
JBrowse link
G Foxf1 forkhead box F1 involved_in ISO (PMID:19500772) DFLAT PMID:19500772 NCBI chrNW_004624746:2,599,211...2,603,031
Ensembl chrNW_004624746:2,599,106...2,603,336
JBrowse link
G Gata4 GATA binding protein 4 acts_upstream_of_or_within ISO (PMID:16127717) MGI PMID:16127717 NCBI chrNW_004624758:25,278,878...25,319,317
Ensembl chrNW_004624758:25,278,874...25,319,318
JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (PMID:16247775) MGI PMID:16247775 NCBI chrNW_004624740:18,961,395...19,238,760
Ensembl chrNW_004624740:18,975,596...19,235,900
JBrowse link
G Hlx H2.0 like homeobox acts_upstream_of_or_within ISO (PMID:8557196) MGI PMID:8557196 NCBI chrNW_004624835:4,223,252...4,227,892
Ensembl chrNW_004624835:4,223,511...4,227,979
JBrowse link
G Hnf1b HNF1 homeobox B acts_upstream_of_or_within ISO (PMID:18635606) MGI PMID:18635606 NCBI chrNW_004624871:4,662,104...4,713,125
Ensembl chrNW_004624871:4,661,669...4,712,960
JBrowse link
G Id2 inhibitor of DNA binding 2 involved_in ISO (PMID:16888283) UniProt PMID:16888283 NCBI chrNW_004624846:2,281,292...2,283,596
Ensembl chrNW_004624846:2,277,961...2,283,571
JBrowse link
G Ihh Indian hedgehog signaling molecule involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:10821773) Ensembl
MGI
PMID:10821773 GO_REF:0000107 NCBI chrNW_004624823:5,959,329...5,965,584
Ensembl chrNW_004624823:5,959,448...5,964,769
JBrowse link
G Nipbl NIPBL cohesin loading factor involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624759:17,899,152...18,078,213
Ensembl chrNW_004624759:17,899,152...17,999,295
JBrowse link
G Ovol2 ovo like zinc finger 2 acts_upstream_of_or_within ISO (PMID:16423343) MGI PMID:16423343 NCBI chrNW_004624741:18,994,689...19,012,381
Ensembl chrNW_004624741:18,995,246...19,012,910
JBrowse link
G Pdgfra platelet derived growth factor receptor alpha involved_in ISO (PMID:10903171) UniProt PMID:10903171 NCBI chrNW_004624761:15,223,789...15,269,685
Ensembl chrNW_004624761:15,225,356...15,269,810
JBrowse link
G Pitx2 paired like homeodomain 2 acts_upstream_of_or_within ISO (PMID:21550054) MGI PMID:21550054 NCBI chrNW_004624838:4,872,279...4,889,780
Ensembl chrNW_004624838:4,871,511...4,886,384
JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO (PMID:10821773) MGI PMID:10821773 NCBI chrNW_004624800:2,202,986...2,215,309
Ensembl chrNW_004624800:2,203,393...2,212,068
JBrowse link
G Shox2 SHOX homeobox 2 acts_upstream_of_or_within ISO (PMID:16141225) MGI PMID:16141225 NCBI chrNW_004624730:35,826,631...35,836,141
Ensembl chrNW_004624730:35,825,922...35,835,756
JBrowse link
G Six2 SIX homeobox 2 involved_in ISO (PMID:19660448) UniProt PMID:19660448 NCBI chrNW_004624738:26,442,935...26,447,100
Ensembl chrNW_004624738:26,442,965...26,446,942
JBrowse link
G Sox11 SRY-box transcription factor 11 involved_in ISO (PMID:15254231) UniProt PMID:15254231 NCBI chrNW_004624846:4,043,010...4,046,660
Ensembl chrNW_004624846:4,044,893...4,046,248
JBrowse link
G Tcf21 transcription factor 21 ISO RGD PMID:11804032 RGD:727206 NCBI chrNW_004624942:890,465...893,679
Ensembl chrNW_004624942:890,365...893,811
JBrowse link
G Tcf7 transcription factor 7 acts_upstream_of_or_within ISO (PMID:15057272) MGI PMID:15057272 NCBI chrNW_004624733:38,076,800...38,104,265
Ensembl chrNW_004624733:38,076,410...38,104,173
JBrowse link
G Tcf7l2 transcription factor 7 like 2 acts_upstream_of_or_within ISO (PMID:15057272) MGI PMID:15057272 NCBI chrNW_004624737:33,341,574...33,526,814
Ensembl chrNW_004624737:33,341,029...33,526,928
JBrowse link
embryonic ectodermal digestive tract development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Vps52 VPS52 subunit of GARP complex acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:23142660) MGI
Ensembl
PMID:23142660 GO_REF:0000107 NCBI chrNW_004624754:23,549,033...23,563,756
Ensembl chrNW_004624754:23,548,998...23,563,931
JBrowse link
embryonic ectodermal digestive tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxf1 forkhead box F1 involved_in ISO (PMID:19500772) DFLAT PMID:19500772 NCBI chrNW_004624746:2,599,211...2,603,031
Ensembl chrNW_004624746:2,599,106...2,603,336
JBrowse link
embryonic foregut morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr2b activin A receptor type 2B acts_upstream_of_or_within ISO (PMID:10921901) MGI PMID:10921901 NCBI chrNW_004624731:2,557,993...2,600,250
Ensembl chrNW_004624731:2,566,063...2,600,035
JBrowse link
G Ctnnb1 catenin beta 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:18692041) Ensembl
MGI
PMID:18692041 GO_REF:0000107 NCBI chrNW_004624730:77,876,361...77,887,228
Ensembl chrNW_004624730:77,875,257...77,887,234
JBrowse link
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 acts_upstream_of_or_within ISO (PMID:18794329) MGI PMID:18794329 NCBI chrNW_004624732:24,908,711...25,088,246
Ensembl chrNW_004624732:24,908,723...25,088,244
JBrowse link
G Foxf1 forkhead box F1 acts_upstream_of_or_within ISO (PMID:11493558) MGI PMID:11493558 NCBI chrNW_004624746:2,599,211...2,603,031
Ensembl chrNW_004624746:2,599,106...2,603,336
JBrowse link
G Foxp4 forkhead box P4 acts_upstream_of_or_within ISO (PMID:15361625) MGI PMID:15361625 NCBI chrNW_004624754:17,402,788...17,445,469
Ensembl chrNW_004624754:17,404,125...17,428,736
JBrowse link
G Gata4 GATA binding protein 4 acts_upstream_of_or_within ISO (PMID:9136933)
(PMID:9136932)
MGI PMID:9136932 PMID:9136933 NCBI chrNW_004624758:25,278,878...25,319,317
Ensembl chrNW_004624758:25,278,874...25,319,318
JBrowse link
G Nckap1 NCK associated protein 1 acts_upstream_of_or_within ISO (PMID:16831833) MGI PMID:16831833 NCBI chrNW_004624844:4,679,840...4,773,617
Ensembl chrNW_004624844:4,676,741...4,773,538
JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO (PMID:9731532) MGI PMID:9731532 NCBI chrNW_004624800:2,202,986...2,215,309
Ensembl chrNW_004624800:2,203,393...2,212,068
JBrowse link
G Smad2 SMAD family member 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:15183723) Ensembl
MGI
PMID:15183723 GO_REF:0000107 NCBI chrNW_004624778:11,380,656...11,460,566
Ensembl chrNW_004624778:11,384,769...11,501,078
JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of_or_within ISO (PMID:15183723) MGI PMID:15183723 NCBI chrNW_004624781:5,795,652...5,890,047
Ensembl chrNW_004624781:5,795,652...5,890,371
JBrowse link
G Sox17 SRY-box transcription factor 17 acts_upstream_of_or_within
involved_in
ISO (PMID:19619492)
(PMID:18462699)
(PMID:21305474)
MGI
BHF-UCL
PMID:18462699 PMID:19619492 PMID:21305474 NCBI chrNW_004624735:1,276,382...1,278,584
Ensembl chrNW_004624735:1,276,302...1,279,181
JBrowse link
embryonic hindgut morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dact1 dishevelled binding antagonist of beta catenin 1 involved_in ISO (PMID:20145239) UniProt PMID:20145239 NCBI chrNW_004624884:3,733,648...3,750,207
Ensembl chrNW_004624884:3,739,334...3,948,621
JBrowse link
G Hoxa13 homeobox A13 ISO RGD PMID:17161201 RGD:1599527 NCBI chrNW_004624739:3,405,860...3,410,426
Ensembl chrNW_004624739:3,406,436...3,410,851
JBrowse link
G Hoxd13 homeobox D13 ISO RGD PMID:17161201 RGD:1599527 NCBI chrNW_004624787:13,233,932...13,237,210
Ensembl chrNW_004624787:13,233,932...13,238,503
JBrowse link
G Tcf7 transcription factor 7 acts_upstream_of_or_within ISO (PMID:15057272) MGI PMID:15057272 NCBI chrNW_004624733:38,076,800...38,104,265
Ensembl chrNW_004624733:38,076,410...38,104,173
JBrowse link
G Tcf7l2 transcription factor 7 like 2 acts_upstream_of_or_within ISO (PMID:15057272) MGI PMID:15057272 NCBI chrNW_004624737:33,341,574...33,526,814
Ensembl chrNW_004624737:33,341,029...33,526,928
JBrowse link
endodermal digestive tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO (PMID:21550054) MGI PMID:21550054 NCBI chrNW_004624737:25,052,698...25,158,346
Ensembl chrNW_004624737:25,052,606...25,158,529
JBrowse link
G Id2 inhibitor of DNA binding 2 involved_in ISO (PMID:16888283) UniProt PMID:16888283 NCBI chrNW_004624846:2,281,292...2,283,596
Ensembl chrNW_004624846:2,277,961...2,283,571
JBrowse link
G Pitx2 paired like homeodomain 2 acts_upstream_of_or_within ISO (PMID:21550054) MGI PMID:21550054 NCBI chrNW_004624838:4,872,279...4,889,780
Ensembl chrNW_004624838:4,871,511...4,886,384
JBrowse link
G Sox17 SRY-box transcription factor 17 involved_in ISO (PMID:21305474) BHF-UCL PMID:21305474 NCBI chrNW_004624735:1,276,382...1,278,584
Ensembl chrNW_004624735:1,276,302...1,279,181
JBrowse link
enteric smooth muscle cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ednrb endothelin receptor type B involved_in ISO (PMID:10021336) BHF-UCL PMID:10021336 NCBI chrNW_004624751:22,459,613...22,491,409
Ensembl chrNW_004624751:22,459,584...22,491,606
JBrowse link
enterocyte differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Yap1 Yes1 associated transcriptional regulator acts_upstream_of ISO (PMID:17980593) MGI PMID:17980593 NCBI chrNW_004624878:621,214...776,363 JBrowse link
foregut morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Notch1 notch receptor 1 acts_upstream_of_or_within ISO (PMID:16107537) MGI PMID:16107537 NCBI chrNW_004624760:1,636,331...1,676,398
Ensembl chrNW_004624760:1,634,702...1,676,531
JBrowse link
hindgut development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ift172 intraflagellar transport 172 acts_upstream_of_or_within ISO (PMID:21653639) MGI PMID:21653639 NCBI chrNW_004624738:9,510,452...9,546,985
Ensembl chrNW_004624738:9,510,512...9,545,933
JBrowse link
hindgut morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO (PMID:11485934) MGI PMID:11485934 NCBI chrNW_004624732:24,159,407...24,381,495
Ensembl chrNW_004624732:24,159,312...24,328,452
JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (PMID:11485934) MGI PMID:11485934 NCBI chrNW_004624740:18,961,395...19,238,760
Ensembl chrNW_004624740:18,975,596...19,235,900
JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO (PMID:11485934) MGI PMID:11485934 NCBI chrNW_004624800:2,202,986...2,215,309
Ensembl chrNW_004624800:2,203,393...2,212,068
JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO (PMID:18804104) MGI PMID:18804104 NCBI chrNW_004624822:1,824,378...1,843,599
Ensembl chrNW_004624822:1,825,238...1,841,288
JBrowse link
intestinal epithelial cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C1galt1 core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 acts_upstream_of_or_within ISO (PMID:21383503) MGI PMID:21383503 NCBI chrNW_004624813:4,795,542...4,832,056 JBrowse link
G Cdh1 cadherin 1 acts_upstream_of_or_within ISO (PMID:22766025) MGI PMID:22766025 NCBI chrNW_004624746:17,480,472...17,557,722
Ensembl chrNW_004624746:17,483,469...17,557,581
JBrowse link
G Dicer1 dicer 1, ribonuclease III acts_upstream_of_or_within ISO (PMID:21307095) MGI PMID:21307095 NCBI chrNW_004624734:7,604,049...7,681,481
Ensembl chrNW_004624734:7,608,273...7,651,819
JBrowse link
G Gsdmc gasdermin C involved_in ISO (PMID:17350798) UniProt PMID:17350798 NCBI chrNW_004624735:25,913,246...25,955,621 JBrowse link
G Il6st interleukin 6 cytokine family signal transducer involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624759:3,258,324...3,315,265
Ensembl chrNW_004624759:3,276,741...3,312,601
JBrowse link
G Klf5 KLF transcription factor 5 acts_upstream_of_or_within ISO (PMID:23266329) MGI PMID:23266329 NCBI chrNW_004624751:27,488,434...27,509,871
Ensembl chrNW_004624751:27,489,535...27,505,494
JBrowse link
G Nkx3-2 NK3 homeobox 2 acts_upstream_of_or_within ISO (PMID:21307095) MGI PMID:21307095 NCBI chrNW_004624755:18,070,706...18,073,847
Ensembl chrNW_004624755:18,070,740...18,072,883
JBrowse link
G Prdm1 PR/SET domain 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:21670299) Ensembl
MGI
PMID:21670299 GO_REF:0000107 NCBI chrNW_004624780:16,205,056...16,227,382
Ensembl chrNW_004624780:16,204,838...16,227,390
JBrowse link
G Spdef SAM pointed domain containing ETS transcription factor acts_upstream_of_or_within ISO (PMID:19549527) MGI PMID:19549527 NCBI chrNW_004624754:22,714,181...22,721,113
Ensembl chrNW_004624754:22,714,432...22,720,504
JBrowse link
G Src SRC proto-oncogene, non-receptor tyrosine kinase involved_in ISO (PMID:25731159) UniProt PMID:25731159 NCBI chrNW_004624842:2,212,561...2,260,514
Ensembl chrNW_004624842:2,211,020...2,230,132
JBrowse link
G Tigar TP53 induced glycolysis regulatory phosphatase acts_upstream_of_or_within ISO (PMID:23726973) MGI PMID:23726973 NCBI chrNW_004624860:1,416,419...1,455,953
Ensembl chrNW_004624860:1,417,131...1,457,717
JBrowse link
G Yap1 Yes1 associated transcriptional regulator involved_in ISO (PMID:25731159) UniProt PMID:25731159 NCBI chrNW_004624878:621,214...776,363 JBrowse link
G Yipf6 Yip1 domain family member 6 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:22802641) Ensembl
MGI
PMID:22802641 GO_REF:0000107 NCBI chrNW_004624891:1,802,679...1,832,450
Ensembl chrNW_004624891:1,802,679...1,838,666
JBrowse link
intestinal epithelial cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cbfa2t2 CBFA2/RUNX1 partner transcriptional co-repressor 2 involved_in ISO (PMID:25398765) UniProt PMID:25398765 NCBI chrNW_004624842:5,637,266...5,772,263
Ensembl chrNW_004624842:5,641,589...5,772,323
JBrowse link
G Cdx2 caudal type homeobox 2 involved_in ISO (PMID:22015720) UniProt PMID:22015720 NCBI chrNW_004624776:10,551,503...10,556,987
Ensembl chrNW_004624776:10,551,503...10,556,845
JBrowse link
G Gata4 GATA binding protein 4 acts_upstream_of_or_within ISO (PMID:9566909) MGI PMID:9566909 NCBI chrNW_004624758:25,278,878...25,319,317
Ensembl chrNW_004624758:25,278,874...25,319,318
JBrowse link
G Gata5 GATA binding protein 5 acts_upstream_of_or_within ISO (PMID:9566909) MGI PMID:9566909 NCBI chrNW_004624741:28,310,679...28,322,209
Ensembl chrNW_004624741:28,310,201...28,321,095
JBrowse link
G Gata6 GATA binding protein 6 acts_upstream_of_or_within ISO (PMID:9566909) MGI PMID:9566909 NCBI chrNW_004624770:9,772,818...9,799,837
Ensembl chrNW_004624770:9,772,818...9,798,259
JBrowse link
G Ptk6 protein tyrosine kinase 6 involved_in ISO (PMID:16782882) UniProt PMID:16782882 NCBI chrNW_004624741:29,183,992...29,192,091
Ensembl chrNW_004624741:29,185,300...29,191,863
JBrowse link
G Sav1 salvador family WW domain containing protein 1 acts_upstream_of_or_within ISO (PMID:18369314) MGI PMID:18369314 NCBI chrNW_004624731:18,262,110...18,282,386 JBrowse link
G Sox9 SRY-box transcription factor 9 acts_upstream_of ISO (PMID:17681175) MGI PMID:17681175 NCBI chrNW_004624801:2,296,353...2,300,853
Ensembl chrNW_004624801:2,296,168...2,301,596
JBrowse link
G Yap1 Yes1 associated transcriptional regulator acts_upstream_of ISO (PMID:17980593) MGI PMID:17980593 NCBI chrNW_004624878:621,214...776,363 JBrowse link
intestinal epithelial cell maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdkn1a cyclin dependent kinase inhibitor 1A ISO RGD PMID:20466941 RGD:8662316 NCBI chrNW_004624754:21,109,074...21,115,869
Ensembl chrNW_004624754:21,108,874...21,115,885
JBrowse link
G Fzd5 frizzled class receptor 5 acts_upstream_of_or_within ISO (PMID:15778706) MGI PMID:15778706 NCBI chrNW_004624765:8,222,193...8,228,530
Ensembl chrNW_004624765:8,222,237...8,228,050
JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:20808783) Ensembl
MGI
PMID:20808783 GO_REF:0000107 NCBI chrNW_004624734:39,414,458...39,471,705
Ensembl chrNW_004624734:39,411,824...39,471,705
JBrowse link
G Hoxa5 homeobox A5 acts_upstream_of_or_within ISO (PMID:10564089) MGI PMID:10564089 NCBI chrNW_004624739:3,461,779...3,464,543
Ensembl chrNW_004624739:3,461,800...3,464,785
JBrowse link
G Tmigd1 transmembrane and immunoglobulin domain containing 1 acts_upstream_of_or_within ISO (PMID:33129760) MGI PMID:33129760 NCBI chrNW_004624786:2,787,236...2,802,483
Ensembl chrNW_004624786:2,774,480...2,802,483
JBrowse link
G Tyms thymidylate synthetase ISO RGD PMID:1260861 RGD:2317427 NCBI chrNW_004624770:11,138,673...11,149,600
Ensembl chrNW_004624770:11,138,652...11,149,600
JBrowse link
midgut development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a1 aldehyde dehydrogenase 1 family member A1 ISO RGD PMID:15964596 RGD:1643113 NCBI chrNW_004624811:505,297...563,795
Ensembl chrNW_004624811:505,101...563,855
JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family member A2 ISO RGD PMID:15964596 RGD:1643113 NCBI chrNW_004624781:13,756,469...13,845,253
Ensembl chrNW_004624781:13,756,390...13,845,479
JBrowse link
G Arg2 arginase 2 ISO RGD PMID:10050048 RGD:4144052 NCBI chrNW_004624734:33,321,161...33,352,306
Ensembl chrNW_004624734:33,321,295...33,352,277
JBrowse link
G Asl argininosuccinate lyase ISO RGD PMID:9544996 RGD:4139911 NCBI chrNW_004624740:8,414,664...8,423,797
Ensembl chrNW_004624740:8,414,733...8,423,777
JBrowse link
G Ass1 argininosuccinate synthase 1 ISO RGD PMID:9544996 RGD:4139911 NCBI chrNW_004624760:5,180,095...5,221,677
Ensembl chrNW_004624760:5,180,095...5,221,732
JBrowse link
G Cps1 carbamoyl-phosphate synthase 1 ISO RGD PMID:9544996 RGD:4139911 NCBI chrNW_004624765:5,527,029...5,652,343
Ensembl chrNW_004624765:5,528,112...5,651,415
JBrowse link
G Ctnnb1 catenin beta 1 ISO RGD PMID:17356920 RGD:2289844 NCBI chrNW_004624730:77,876,361...77,887,228
Ensembl chrNW_004624730:77,875,257...77,887,234
JBrowse link
G Dab1 DAB adaptor protein 1 ISO RGD PMID:19946030 RGD:2317766 NCBI chrNW_004624862:2,053,637...3,159,712
Ensembl chrNW_004624862:2,892,851...3,144,194
JBrowse link
G Egfr epidermal growth factor receptor ISO RGD PMID:7926492 RGD:10395256 NCBI chrNW_004624740:584,133...713,205
Ensembl chrNW_004624740:589,606...713,271
JBrowse link
G Foxf1 forkhead box F1 involved_in ISO (PMID:19500772) DFLAT PMID:19500772 NCBI chrNW_004624746:2,599,211...2,603,031
Ensembl chrNW_004624746:2,599,106...2,603,336
JBrowse link
G Hmgcs2 3-hydroxy-3-methylglutaryl-CoA synthase 2 ISO RGD PMID:8620869 RGD:2326125 NCBI chrNW_004624772:15,432,612...15,464,343
Ensembl chrNW_004624772:15,432,198...15,467,797
JBrowse link
G Otc ornithine transcarbamylase ISO RGD PMID:9544996 RGD:4139911 NCBI chrNW_004624762:17,038,223...17,104,853
Ensembl chrNW_004624762:17,038,223...17,104,965
JBrowse link
G Reg1a regenerating family member 1 alpha ISO RGD PMID:7720628 RGD:9850133 NCBI chrNW_004624749:23,993,755...23,995,923 JBrowse link
G Reln reelin ISO RGD PMID:19946030 RGD:2317766 NCBI chrNW_004624739:25,472,626...25,918,064
Ensembl chrNW_004624739:25,472,561...25,918,167
JBrowse link
G Rxra retinoid X receptor alpha ISO RGD PMID:15964596 RGD:1643113 NCBI chrNW_004624760:2,379,809...2,455,749
Ensembl chrNW_004624760:2,380,708...2,456,928
JBrowse link
G Smo smoothened, frizzled class receptor involved_in ISO (PMID:11517919) BHF-UCL PMID:11517919 NCBI chrNW_004624783:7,012,385...7,039,302
Ensembl chrNW_004624783:7,011,899...7,039,921
JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO (PMID:19100728) MGI PMID:19100728 NCBI chrNW_004624822:1,824,378...1,843,599
Ensembl chrNW_004624822:1,825,238...1,841,288
JBrowse link
negative regulation of stomach neuroendocrine cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hes1 hes family bHLH transcription factor 1 acts_upstream_of_or_within ISO (PMID:18173746) MGI PMID:18173746 NCBI chrNW_004624730:63,563,848...63,566,303
Ensembl chrNW_004624730:63,563,754...63,566,781
JBrowse link
post-embryonic digestive tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nkx2-3 NK2 homeobox 3 acts_upstream_of_or_within ISO (PMID:10926756) MGI PMID:10926756 NCBI chrNW_004624737:11,253,490...11,256,974
Ensembl chrNW_004624737:11,253,483...11,256,232
JBrowse link
posterior midgut development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ednrb endothelin receptor type B acts_upstream_of_or_within ISO (PMID:8582288) MGI PMID:8582288 NCBI chrNW_004624751:22,459,613...22,491,409
Ensembl chrNW_004624751:22,459,584...22,491,606
JBrowse link
stomach development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO (PMID:29700203) MGI PMID:29700203 NCBI chrNW_004624763:16,126,582...16,393,476
Ensembl chrNW_004624763:16,126,938...16,392,804
JBrowse link
G Kcnq1 potassium voltage-gated channel subfamily Q member 1 involved_in ISO (PMID:15385447) MGI PMID:15385447 NCBI chrNW_004624767:15,252,961...15,613,373
Ensembl chrNW_004624767:15,252,950...15,613,562
JBrowse link
stomach neuroendocrine cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl1 achaete-scute family bHLH transcription factor 1 acts_upstream_of_or_within ISO (PMID:18173746) MGI PMID:18173746 NCBI chrNW_004624750:5,487,046...5,489,399
Ensembl chrNW_004624750:5,487,053...5,493,339
JBrowse link
G Hes1 hes family bHLH transcription factor 1 acts_upstream_of ISO (PMID:18173746) MGI PMID:18173746 NCBI chrNW_004624730:63,563,848...63,566,303
Ensembl chrNW_004624730:63,563,754...63,566,781
JBrowse link
visceral mesoderm-endoderm interaction involved in midgut development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxl1 forkhead box L1 acts_upstream_of_or_within ISO (PMID:9203584) MGI PMID:9203584 NCBI chrNW_004624746:2,640,486...2,645,326
Ensembl chrNW_004624746:2,642,691...2,643,731
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15114
    multicellular organismal process 7140
      multicellular organism development 4733
        tube development 1173
          digestive tract development 159
            determination of digestive tract left/right asymmetry + 7
            digestive tract mesoderm development 1
            digestive tract morphogenesis + 54
            ectodermal digestive tract development + 2
            embryonic digestive tract development + 37
            enteric smooth muscle cell differentiation 1
            hindgut development + 10
            intestinal epithelial cell differentiation + 27
            midgut development + 19
            pharynx development + 4
            stomach development + 5
Path 2
Term Annotations click to browse term
  biological_process 15114
    developmental process 6196
      anatomical structure development 5828
        multicellular organism development 4733
          system development 4130
            digestive system development 173
              digestive tract development 159
                determination of digestive tract left/right asymmetry + 7
                digestive tract mesoderm development 1
                digestive tract morphogenesis + 54
                ectodermal digestive tract development + 2
                embryonic digestive tract development + 37
                enteric smooth muscle cell differentiation 1
                hindgut development + 10
                intestinal epithelial cell differentiation + 27
                midgut development + 19
                pharynx development + 4
                stomach development + 5
paths to the root