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ONTOLOGY REPORT - ANNOTATIONS


Term:digestive tract development
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Accession:GO:0048565 term browser browse the term
Definition:The process whose specific outcome is the progression of the digestive tract over time, from its formation to the mature structure. The digestive tract is the anatomical structure through which food passes and is processed.
Synonyms:narrow_synonym: intestinal development;   intestine development
 broad_synonym: gut development


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digestive tract development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alx4 aristaless-like homeobox 4 acts_upstream_of_or_within IMP (MGI:1095762|PMID:9268572) MGI PMID:9268572 MGI:1095762 NCBI chr 2:93,642,434...93,681,341
Ensembl chr 2:93,642,384...93,681,339
JBrowse link
G Cckbr cholecystokinin B receptor acts_upstream_of_or_within IMP (MGI:3606849|PMID:15476751) MGI PMID:15476751 MGI:3606849 NCBI chr 7:105,425,676...105,436,339
Ensembl chr 7:105,425,731...105,470,898
JBrowse link
G Ccnb1 cyclin B1 ISO perinatal small intestine RGD PMID:17692466 RGD:2316322 NCBI chr13:100,778,739...100,786,486
Ensembl chr13:100,778,650...100,786,570
JBrowse link
G Cd36 CD36 molecule ISO RGD PMID:11595646 RGD:628450 NCBI chr 5:17,781,690...17,888,959
Ensembl chr 5:17,781,690...17,888,801
JBrowse link
G Chd8 chromodomain helicase DNA binding protein 8 involved_in
acts_upstream_of_or_within
ISO
IMP
(MGI:5792969|PMID:27602517) MGI PMID:27602517 GO_REF:0000096 MGI:4834177 MGI:5792969 NCBI chr14:52,198,151...52,258,042
Ensembl chr14:52,198,151...52,257,780
JBrowse link
G Ckmt1 creatine kinase, mitochondrial 1, ubiquitous ISO RGD PMID:8086475 RGD:11565082 NCBI chr 2:121,357,773...121,363,737
Ensembl chr 2:121,357,714...121,363,737
JBrowse link
G Cldn18 claudin 18 acts_upstream_of_or_within IMP (MGI:5489769|PMID:22437732) MGI PMID:22437732 MGI:5489769 NCBI chr 9:99,690,796...99,717,267
Ensembl chr 9:99,689,461...99,717,267
JBrowse link
G Clmp CXADR-like membrane protein involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 9:40,682,123...40,785,553
Ensembl chr 9:40,685,962...40,785,319
JBrowse link
G Cobl cordon-bleu WH2 repeat acts_upstream_of_or_within IEP (PMID:7586755) BHF-UCL PMID:7586755 NCBI chr11:12,236,676...12,465,022
Ensembl chr11:12,236,608...12,464,960
JBrowse link
G Col3a1 collagen, type III, alpha 1 acts_upstream_of_or_within IMP (MGI:86656|PMID:9050868) MGI PMID:9050868 MGI:86656 NCBI chr 1:45,311,538...45,349,706
Ensembl chr 1:45,311,538...45,349,706
JBrowse link
G Cyp1a1 cytochrome P450, family 1, subfamily a, polypeptide 1 ISO RGD PMID:12162855 RGD:727721 NCBI chr 9:57,687,928...57,703,824
Ensembl chr 9:57,687,928...57,703,824
JBrowse link
G Dchs1 dachsous cadherin related 1 acts_upstream_of_or_within IMP (MGI:4939936|PMID:21303848) MGI PMID:21303848 MGI:4939936 NCBI chr 7:105,752,989...105,788,355
Ensembl chr 7:105,752,990...105,787,654
JBrowse link
G Dicer1 dicer 1, ribonuclease type III acts_upstream_of_or_within IMP (MGI:4946569|PMID:21307095) MGI PMID:21307095 MGI:4946569 NCBI chr12:104,687,740...104,751,968
Ensembl chr12:104,687,742...104,751,952
JBrowse link
G Ep300 E1A binding protein p300 ISO RGD PMID:17916272 RGD:2312267 NCBI chr15:81,586,209...81,652,077
Ensembl chr15:81,585,351...81,652,077
JBrowse link
G Fat4 FAT atypical cadherin 4 acts_upstream_of_or_within IMP (MGI:4939936|PMID:21303848) MGI PMID:21303848 MGI:4939936 NCBI chr 3:38,884,667...39,011,992
Ensembl chr 3:38,886,940...39,011,985
JBrowse link
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within IMP (MGI:3052435|PMID:15234214) MGI PMID:15234214 MGI:3052435 NCBI chr13:118,714,699...118,792,573
Ensembl chr13:118,669,791...118,792,115
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within IMP (MGI:3052435|PMID:15234214) MGI PMID:15234214 MGI:3052435 NCBI chr 7:130,162,451...130,266,808
Ensembl chr 7:130,162,451...133,123,350
JBrowse link
G Foxf1 forkhead box F1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 8:121,084,386...121,088,154
Ensembl chr 8:121,084,386...121,088,144
JBrowse link
G Hrh2 histamine receptor H2 acts_upstream_of_or_within IMP (MGI:1860000|PMID:10862789)
(MGI:3606849|PMID:15476751)
MGI PMID:10862789 PMID:15476751 MGI:1860000 MGI:3606849 NCBI chr13:54,191,970...54,236,182
Ensembl chr13:54,192,129...54,236,180
JBrowse link
G Kit KIT proto-oncogene receptor tyrosine kinase involved_in IMP (MGI:3040777|PMID:15067126) UniProt PMID:15067126 MGI:3040777 NCBI chr 5:75,574,987...75,656,722
Ensembl chr 5:75,574,916...75,656,722
JBrowse link
G Lgr4 leucine-rich repeat-containing G protein-coupled receptor 4 acts_upstream_of_or_within IMP (MGI:5581372|PMID:24680895) MGI PMID:24680895 MGI:5581372 NCBI chr 2:109,917,647...110,014,257
Ensembl chr 2:109,917,647...110,014,257
JBrowse link
G Mixl1 Mix1 homeobox-like 1 (Xenopus laevis) acts_upstream_of_or_within IMP (MGI:2181739|PMID:12117810) MGI PMID:12117810 MGI:2181739 NCBI chr 1:180,693,043...180,697,034
Ensembl chr 1:180,693,043...180,697,034
JBrowse link
G Muc4 mucin 4 ISO RGD PMID:15389518 RGD:2303738 NCBI chr16:32,735,886...32,782,391
Ensembl chr16:32,735,886...32,782,391
JBrowse link
G Myocd myocardin acts_upstream_of_or_within IMP (MGI:4941650|PMID:21357509) MGI PMID:21357509 MGI:4941650 NCBI chr11:65,173,608...65,269,989
Ensembl chr11:65,176,561...65,269,989
JBrowse link
G Nat2 N-acetyltransferase 2 (arylamine N-acetyltransferase) ISO RGD PMID:18799802 RGD:2303764 NCBI chr 8:67,494,875...67,502,644
Ensembl chr 8:67,494,858...67,502,584
JBrowse link
G Nipbl NIPBL cohesin loading factor involved_in IBA (MGI:6201960|PMID:21873635) GO_Central PMID:21873635 MGI:6201960 NCBI chr15:8,289,824...8,465,315
Ensembl chr15:8,290,617...8,444,463
JBrowse link
G Nkx2-2 NK2 homeobox 2 acts_upstream_of_or_within IMP (MGI:3835247|PMID:18987169) MGI PMID:18987169 MGI:3835247 NCBI chr 2:147,176,485...147,195,434
Ensembl chr 2:147,177,546...147,194,243
JBrowse link
G Nkx2-3 NK2 homeobox 3 acts_upstream_of_or_within IMP (MGI:1334782|PMID:10207146)
(MGI:1888604|PMID:10926756)
MGI PMID:10207146 PMID:10926756 MGI:1334782 MGI:1888604 NCBI chr19:43,612,325...43,615,892
Ensembl chr19:43,612,325...43,615,892
JBrowse link
G Nkx2-6 NK2 homeobox 6 acts_upstream_of_or_within IEP (PMID:9545560) BHF-UCL PMID:9545560 NCBI chr14:69,171,802...69,175,540
Ensembl chr14:69,171,802...69,175,518
JBrowse link
G Nr1h4 nuclear receptor subfamily 1, group H, member 4 ISO RGD PMID:11984532 RGD:1625207 NCBI chr10:89,454,234...89,533,645
Ensembl chr10:89,454,234...89,533,585
JBrowse link
G Nts neurotensin ISO RGD PMID:8571204 RGD:9743850 NCBI chr10:102,481,756...102,490,418
Ensembl chr10:102,481,756...102,490,486
JBrowse link
G Oxtr oxytocin receptor ISO RGD PMID:19003903 RGD:2303961 NCBI chr 6:112,473,683...112,491,035
Ensembl chr 6:112,473,683...112,489,943
JBrowse link
G Pdgfa platelet derived growth factor, alpha involved_in
acts_upstream_of_or_within
IMP
IGI
(MGI:1860627|PMID:10903171)
(MGI:5543868|PMID:23938297)
UniProt
MGI
PMID:10903171 PMID:23938297 MGI:1860627 MGI:5543868 NCBI chr 5:138,976,014...139,000,792
Ensembl chr 5:138,976,014...138,997,370
JBrowse link
G Pdgfc platelet-derived growth factor, C polypeptide acts_upstream_of_or_within IGI (MGI:5543868|PMID:23938297) MGI PMID:23938297 MGI:5543868 NCBI chr 3:81,036,416...81,214,040
Ensembl chr 3:81,036,416...81,214,040
JBrowse link
G Pdx1 pancreatic and duodenal homeobox 1 acts_upstream_of_or_within IMP (MGI:4355651|PMID:19619492) MGI PMID:19619492 MGI:4355651 NCBI chr 5:147,270,097...147,275,848
Ensembl chr 5:147,269,959...147,275,848
JBrowse link
G Pkd1 polycystin 1, transient receptor potential channel interacting involved_in ISO (PMID:11891195) UniProt PMID:11891195 NCBI chr17:24,548,689...24,596,514
Ensembl chr17:24,549,834...24,596,508
JBrowse link
G Rb1 RB transcriptional corepressor 1 acts_upstream_of_or_within IMP (MGI:3703460|PMID:17257418) MGI PMID:17257418 MGI:3703460 NCBI chr14:73,192,858...73,325,951
Ensembl chr14:73,183,673...73,325,822
JBrowse link
G Slc4a2 solute carrier family 4 (anion exchanger), member 2 ISO RGD PMID:8770049 RGD:9999233 NCBI chr 5:24,423,761...24,440,947
Ensembl chr 5:24,423,837...24,440,950
JBrowse link
G Smo smoothened, frizzled class receptor acts_upstream_of_or_within IMP (MGI:4355651|PMID:19619492) MGI PMID:19619492 MGI:4355651 NCBI chr 6:29,735,497...29,761,366
Ensembl chr 6:29,735,503...29,761,365
JBrowse link
G Tgfb1 transforming growth factor, beta 1 ISO RGD PMID:12815632 RGD:2302031 NCBI chr 7:25,687,002...25,705,077
Ensembl chr 7:25,687,002...25,705,077
JBrowse link
G Tgfb2 transforming growth factor, beta 2 ISO RGD PMID:12815632 RGD:2302031 NCBI chr 1:186,622,787...186,709,697
Ensembl chr 1:186,622,792...186,705,989
JBrowse link
G Tgfb3 transforming growth factor, beta 3 ISO RGD PMID:12815632 RGD:2302031 NCBI chr12:86,056,743...86,079,041
Ensembl chr12:86,056,745...86,079,041
JBrowse link
G Tgfbr1 transforming growth factor, beta receptor I ISO RGD PMID:12815632 RGD:2302031 NCBI chr 4:47,353,222...47,414,926
Ensembl chr 4:47,353,222...47,414,931
JBrowse link
G Tgfbr2 transforming growth factor, beta receptor II ISO RGD PMID:12815632 RGD:2302031 NCBI chr 9:116,087,695...116,175,363
Ensembl chr 9:116,084,293...116,175,360
JBrowse link
G Thra thyroid hormone receptor alpha ISO RGD PMID:17496154 RGD:2314319 NCBI chr11:98,740,776...98,769,006
Ensembl chr11:98,740,638...98,769,006
JBrowse link
G Tk1 thymidine kinase 1 ISO RGD PMID:6701043 RGD:2317231 NCBI chr11:117,815,519...117,826,087
Ensembl chr11:117,815,526...117,826,092
JBrowse link
cloaca development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 involved_in IGI (MGI:5306539|PMID:21959375) UniProt PMID:21959375 MGI:5306539 NCBI chr10:20,952,232...21,080,429
Ensembl chr10:20,952,547...21,080,429
JBrowse link
cloacal septation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within IEP (PMID:17442697) UniProt PMID:17442697 NCBI chr14:46,383,525...46,390,669
Ensembl chr14:46,383,520...46,390,669
JBrowse link
G Trp63 transformation related protein 63 acts_upstream_of_or_within IMP (MGI:2387879|PMID:12368184) MGI PMID:12368184 MGI:2387879 NCBI chr16:25,683,763...25,892,088
Ensembl chr16:25,683,763...25,892,102
JBrowse link
G Wnt11 wingless-type MMTV integration site family, member 11 involved_in ISO (PMID:9757009) UniProt PMID:9757009 NCBI chr 7:98,835,084...98,854,747
Ensembl chr 7:98,835,112...98,855,195
JBrowse link
determination of digestive tract left/right asymmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccdc103 coiled-coil domain containing 103 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr11:102,881,224...102,885,216
Ensembl chr11:102,881,204...102,885,216
JBrowse link
G Ccdc39 coiled-coil domain containing 39 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 3:33,810,757...33,844,325
Ensembl chr 3:33,812,362...33,844,310
JBrowse link
G Ccdc40 coiled-coil domain containing 40 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr11:119,228,490...119,265,248
Ensembl chr11:119,228,572...119,265,238
JBrowse link
G Dnaaf1 dynein, axonemal assembly factor 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 8:119,575,235...119,598,454
Ensembl chr 8:119,575,235...119,598,454
JBrowse link
G Megf8 multiple EGF-like-domains 8 acts_upstream_of_or_within IMP
ISO
(MGI:3839019|PMID:18043505)
(MGI:3838463|PMID:19218456)
MGI PMID:18043505 PMID:19218456 MGI:3838463 MGI:3839019 NCBI chr 7:25,316,738...25,365,917
Ensembl chr 7:25,317,164...25,365,917
JBrowse link
G Zic3 zinc finger protein of the cerebellum 3 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr  X:58,030,628...58,036,630
Ensembl chr  X:58,022,700...58,041,736
JBrowse link
determination of intestine left/right asymmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nphp3 nephronophthisis 3 (adolescent) involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 9:104,002,544...104,043,811
Ensembl chr 9:104,002,544...104,043,818
JBrowse link
determination of stomach left/right asymmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nphp3 nephronophthisis 3 (adolescent) involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 9:104,002,544...104,043,811
Ensembl chr 9:104,002,544...104,043,818
JBrowse link
digestive tract mesoderm development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Shh sonic hedgehog involved_in ISO RGD
MGI
PMID:9368764 GO_REF:0000096 MGI:4417868 RGD:2306312 NCBI chr 5:28,456,840...28,467,101
Ensembl chr 5:28,456,815...28,467,256
JBrowse link
digestive tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agr2 anterior gradient 2 involved_in IMP (MGI:5634869|PMID:25666625) UniProt PMID:25666625 MGI:5634869 NCBI chr12:35,992,925...36,004,081
Ensembl chr12:35,992,907...36,004,087
JBrowse link
G Bcl2 B cell leukemia/lymphoma 2 acts_upstream_of_or_within IMP (MGI:70264|PMID:7812968) MGI PMID:7812968 MGI:70264 NCBI chr 1:106,538,176...106,714,290
Ensembl chr 1:106,538,178...106,714,274
JBrowse link
G Cfc1 cripto, FRL-1, cryptic family 1 acts_upstream_of_or_within IMP (MGI:1346729|PMID:10521397) MGI PMID:10521397 MGI:1346729 NCBI chr 1:34,535,648...34,544,311
Ensembl chr 1:34,535,648...34,544,313
JBrowse link
G Egfr epidermal growth factor receptor acts_upstream_of_or_within IMP (MGI:74263|PMID:7618084) MGI PMID:7618084 MGI:74263 NCBI chr11:16,752,203...16,913,907
Ensembl chr11:16,752,203...16,918,158
JBrowse link
G Ephb3 Eph receptor B3 involved_in IMP (MGI:2388849|PMID:12408869) UniProt PMID:12408869 MGI:2388849 NCBI chr16:21,204,620...21,223,309
Ensembl chr16:21,204,755...21,223,305
JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 acts_upstream_of_or_within IMP (MGI:4352984|PMID:19407216) MGI PMID:19407216 MGI:4352984 NCBI chr 5:33,721,724...33,737,068
Ensembl chr 5:33,721,674...33,737,068
JBrowse link
G Hif1a hypoxia inducible factor 1, alpha subunit acts_upstream_of_or_within IMP (MGI:4830408|PMID:20808783) MGI PMID:20808783 MGI:4830408 NCBI chr12:73,901,324...73,947,554
Ensembl chr12:73,901,375...73,947,530
JBrowse link
G Il18 interleukin 18 ISO RGD PMID:21088234 RGD:4889157 NCBI chr 9:50,554,700...50,581,841
Ensembl chr 9:50,554,827...50,581,840
JBrowse link
G Nodal nodal acts_upstream_of_or_within IMP (MGI:2155575|PMID:11311163) MGI PMID:11311163 MGI:2155575 NCBI chr10:61,417,972...61,425,338
Ensembl chr10:61,417,972...61,425,338
JBrowse link
G Percc1 proline and glutamate rich with coiled coil 1 involved_in IMP (MGI:6368375|PMID:31217582) UniProt PMID:31217582 MGI:6368375 NCBI chr17:25,171,154...25,180,818
Ensembl chr17:25,172,897...25,175,471
JBrowse link
G Sfrp1 secreted frizzled-related protein 1 acts_upstream_of_or_within IGI (MGI:3839161|PMID:19300477) MGI PMID:19300477 MGI:3839161 NCBI chr 8:23,411,383...23,449,632
Ensembl chr 8:23,411,502...23,449,632
JBrowse link
G Sfrp2 secreted frizzled-related protein 2 acts_upstream_of_or_within IGI (MGI:3839161|PMID:19300477) MGI PMID:19300477 MGI:3839161 NCBI chr 3:83,765,750...83,774,314
Ensembl chr 3:83,766,321...83,774,316
JBrowse link
G Sfrp5 secreted frizzled-related sequence protein 5 acts_upstream_of_or_within IGI (MGI:3839161|PMID:19300477) MGI PMID:19300477 MGI:3839161 NCBI chr19:42,197,971...42,202,252
Ensembl chr19:42,197,971...42,202,252
JBrowse link
G Shh sonic hedgehog acts_upstream_of_or_within IMP (MGI:1277744|PMID:9731532) MGI PMID:9731532 MGI:1277744 NCBI chr 5:28,456,840...28,467,101
Ensembl chr 5:28,456,815...28,467,256
JBrowse link
G Sox10 SRY (sex determining region Y)-box 10 acts_upstream_of_or_within IMP (MGI:3699432|PMID:15843399), (MGI:56157|PMID:6512238) MGI PMID:6512238 PMID:15843399 MGI:3699432 MGI:56157 NCBI chr15:79,154,913...79,164,490
Ensembl chr15:79,154,908...79,165,240
JBrowse link
G Stra6 stimulated by retinoic acid gene 6 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 9:58,063,793...58,154,004
Ensembl chr 9:58,063,788...58,153,996
JBrowse link
G Stx2 syntaxin 2 involved_in ISO RGD
MGI
PMID:12464668 GO_REF:0000096 MGI:4417868 RGD:1298909 NCBI chr 5:128,984,557...129,008,600
Ensembl chr 5:128,984,557...129,008,574
JBrowse link
G Trp73 transformation related protein 73 acts_upstream_of_or_within IMP (MGI:1354064|PMID:10716451) MGI PMID:10716451 MGI:1354064 NCBI chr 4:154,056,249...154,139,875
Ensembl chr 4:154,056,253...154,140,208
Ensembl chr 4:154,056,253...154,140,208
JBrowse link
G Vangl2 VANGL planar cell polarity 2 acts_upstream_of_or_within IGI (MGI:3839161|PMID:19300477) MGI PMID:19300477 MGI:3839161 NCBI chr 1:172,000,960...172,027,318
Ensembl chr 1:172,000,960...172,028,444
JBrowse link
G Wnt5a wingless-type MMTV integration site family, member 5A acts_upstream_of_or_within IMP (MGI:3839161|PMID:19300477) MGI PMID:19300477 MGI:3839161 NCBI chr14:28,504,543...28,527,448
Ensembl chr14:28,504,750...28,527,448
JBrowse link
embryonic digestive tract development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase acts_upstream_of_or_within IMP (MGI:74163|PMID:7670465) MGI PMID:7670465 MGI:74163 NCBI chr 2:163,726,571...163,750,239
Ensembl chr 2:163,726,584...163,750,239
JBrowse link
G Aldh1a2 aldehyde dehydrogenase family 1, subfamily A2 acts_upstream_of_or_within IMP (MGI:3663954|PMID:16806149) MGI PMID:16806149 MGI:3663954 NCBI chr 9:71,215,789...71,296,243
Ensembl chr 9:71,215,789...71,296,243
JBrowse link
G Cxcl15 chemokine (C-X-C motif) ligand 15 involved_in ISO (PMID:20875417) DFLAT PMID:20875417 NCBI chr 5:90,794,534...90,803,067
Ensembl chr 5:90,794,534...90,803,067
JBrowse link
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within IMP (MGI:3611702|PMID:16308329) MGI PMID:16308329 MGI:3611702 NCBI chr13:118,714,699...118,792,573
Ensembl chr13:118,669,791...118,792,115
JBrowse link
G Fgf9 fibroblast growth factor 9 acts_upstream_of_or_within IMP (MGI:3611702|PMID:16308329) MGI PMID:16308329 MGI:3611702 NCBI chr14:58,070,671...58,112,854
Ensembl chr14:58,070,547...58,112,720
JBrowse link
G Foxf1 forkhead box F1 acts_upstream_of_or_within IGI (MGI:3617131|PMID:16439479) MGI PMID:16439479 MGI:3617131 NCBI chr 8:121,084,386...121,088,154
Ensembl chr 8:121,084,386...121,088,144
JBrowse link
G Foxf2 forkhead box F2 acts_upstream_of_or_within IGI (MGI:3617131|PMID:16439479) MGI PMID:16439479 MGI:3617131 NCBI chr13:31,625,816...31,631,406
Ensembl chr13:31,625,816...31,631,403
JBrowse link
G Gli2 GLI-Kruppel family member GLI2 acts_upstream_of_or_within IMP (MGI:1353327|PMID:10693670) MGI PMID:10693670 MGI:1353327 NCBI chr 1:118,834,061...119,054,405
Ensembl chr 1:118,834,132...119,053,619
JBrowse link
G Gli3 GLI-Kruppel family member GLI3 acts_upstream_of_or_within IMP (MGI:1353327|PMID:10693670) MGI PMID:10693670 MGI:1353327 NCBI chr13:15,463,723...15,730,026
Ensembl chr13:15,463,235...15,730,026
JBrowse link
G Myb myeloblastosis oncogene acts_upstream_of_or_within IMP (MGI:1346939|PMID:10523863) MGI PMID:10523863 MGI:1346939 NCBI chr10:21,124,930...21,160,984
Ensembl chr10:21,124,935...21,160,984
JBrowse link
G Pcsk5 proprotein convertase subtilisin/kexin type 5 involved_in ISO
IMP
(MGI:3795695|PMID:18519639) MGI
BHF-UCL
PMID:18519639 GO_REF:0000096 MGI:3795695 MGI:4834177 NCBI chr19:17,432,314...17,837,712
Ensembl chr19:17,432,319...17,837,632
JBrowse link
G Pkdcc protein kinase domain containing, cytoplasmic involved_in IMP (MGI:3813934|PMID:19097194) UniProt PMID:19097194 MGI:3813934 NCBI chr17:83,215,283...83,225,069
Ensembl chr17:83,215,292...83,225,070
JBrowse link
G Rarb retinoic acid receptor, beta involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr14:16,430,839...17,082,331
Ensembl chr14:16,430,839...16,819,156
JBrowse link
G Rarres2 retinoic acid receptor responder (tazarotene induced) 2 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 6:48,569,696...48,572,845
Ensembl chr 6:48,569,696...48,572,789
JBrowse link
G Sall1 spalt like transcription factor 1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 8:89,027,242...89,044,162
Ensembl chr 8:89,027,235...89,044,162
JBrowse link
G Sct secretin ISO RGD PMID:1711228 RGD:729899 NCBI chr 7:141,278,329...141,279,174
Ensembl chr 7:141,278,330...141,279,133
JBrowse link
G Stra6 stimulated by retinoic acid gene 6 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 9:58,063,793...58,154,004
Ensembl chr 9:58,063,788...58,153,996
JBrowse link
G Tgfb2 transforming growth factor, beta 2 involved_in ISO (PMID:20875417) DFLAT PMID:20875417 NCBI chr 1:186,622,787...186,709,697
Ensembl chr 1:186,622,792...186,705,989
JBrowse link
G Tnf tumor necrosis factor involved_in ISO (PMID:20875417) DFLAT PMID:20875417 NCBI chr17:35,199,367...35,202,007
Ensembl chr17:35,199,381...35,202,007
JBrowse link
embryonic digestive tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within IMP (MGI:3722952|PMID:16618415)
(MGI:3040447|PMID:15017552)
MGI PMID:15017552 PMID:16618415 MGI:3040447 MGI:3722952 NCBI chr13:118,714,699...118,792,573
Ensembl chr13:118,669,791...118,792,115
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within IMP (MGI:3722952|PMID:16618415), (MGI:5317412|PMID:21492869)
(MGI:5285062|PMID:21550054)
MGI PMID:16618415 PMID:21492869 PMID:21550054 MGI:3722952 MGI:5285062 MGI:5317412 NCBI chr 7:130,162,451...130,266,808
Ensembl chr 7:130,162,451...133,123,350
JBrowse link
G Foxf1 forkhead box F1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 8:121,084,386...121,088,154
Ensembl chr 8:121,084,386...121,088,144
JBrowse link
G Gata4 GATA binding protein 4 acts_upstream_of_or_within IMP (MGI:3590399|PMID:16127717) MGI PMID:16127717 MGI:3590399 NCBI chr14:63,198,914...63,271,712
Ensembl chr14:63,198,922...63,271,692
JBrowse link
G Gli3 GLI-Kruppel family member GLI3 acts_upstream_of_or_within IMP (MGI:3608164|PMID:16247775) MGI PMID:16247775 MGI:3608164 NCBI chr13:15,463,723...15,730,026
Ensembl chr13:15,463,235...15,730,026
JBrowse link
G Hlx H2.0-like homeobox acts_upstream_of_or_within IMP (MGI:79044|PMID:8557196) MGI PMID:8557196 MGI:79044 NCBI chr 1:184,727,143...184,732,493
Ensembl chr 1:184,727,140...184,732,619
JBrowse link
G Hnf1b HNF1 homeobox B acts_upstream_of_or_within IMP (MGI:3807614|PMID:18635606) MGI PMID:18635606 MGI:3807614 NCBI chr11:83,850,209...83,905,917
Ensembl chr11:83,850,063...83,905,819
JBrowse link
G Id2 inhibitor of DNA binding 2 involved_in IDA (MGI:4399020|PMID:16888283) UniProt PMID:16888283 MGI:4399020 NCBI chr12:25,093,799...25,096,092
Ensembl chr12:25,093,799...25,097,140
JBrowse link
G Ihh Indian hedgehog acts_upstream_of_or_within IMP (MGI:1858523|PMID:10821773) MGI PMID:10821773 MGI:1858523 NCBI chr 1:74,945,315...74,951,672
Ensembl chr 1:74,945,315...74,951,672
JBrowse link
G Nipbl NIPBL cohesin loading factor involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr15:8,289,824...8,465,315
Ensembl chr15:8,290,617...8,444,463
JBrowse link
G Ovol2 ovo like zinc finger 2 acts_upstream_of_or_within IMP (MGI:3618450|PMID:16423343) MGI PMID:16423343 MGI:3618450 NCBI chr 2:144,305,175...144,332,080
Ensembl chr 2:144,305,175...144,332,146
JBrowse link
G Pdgfra platelet derived growth factor receptor, alpha polypeptide involved_in IMP (MGI:1860627|PMID:10903171) UniProt PMID:10903171 MGI:1860627 NCBI chr 5:75,151,322...75,198,206
Ensembl chr 5:75,152,292...75,198,215
JBrowse link
G Pitx2 paired-like homeodomain transcription factor 2 acts_upstream_of_or_within IMP (MGI:5285062|PMID:21550054) MGI PMID:21550054 MGI:5285062 NCBI chr 3:129,199,878...129,219,594
Ensembl chr 3:129,199,878...129,219,591
JBrowse link
G Shh sonic hedgehog involved_in
acts_upstream_of_or_within
TAS
IMP
(MGI:5306328|PMID:11001584)
(MGI:1858523|PMID:10821773)
BHF-UCL
MGI
PMID:10821773 PMID:11001584 MGI:1858523 MGI:5306328 NCBI chr 5:28,456,840...28,467,101
Ensembl chr 5:28,456,815...28,467,256
JBrowse link
G Shox2 short stature homeobox 2 acts_upstream_of_or_within IMP (MGI:3604918|PMID:16141225) MGI PMID:16141225 MGI:3604918 NCBI chr 3:66,971,723...66,981,771
Ensembl chr 3:66,971,727...66,981,771
JBrowse link
G Six2 sine oculis-related homeobox 2 involved_in IMP (MGI:4365896|PMID:19660448) UniProt PMID:19660448 MGI:4365896 NCBI chr17:85,662,736...85,688,254
Ensembl chr17:85,684,277...85,688,274
JBrowse link
G Sox11 SRY (sex determining region Y)-box 11 involved_in IMP (MGI:3052265|PMID:15254231) UniProt PMID:15254231 MGI:3052265 NCBI chr12:27,334,268...27,342,718
Ensembl chr12:27,334,264...27,342,574
JBrowse link
G Tcf21 transcription factor 21 involved_in ISO RGD
MGI
PMID:11804032 GO_REF:0000096 MGI:4417868 RGD:727206 NCBI chr10:22,817,263...22,820,143
Ensembl chr10:22,817,281...22,820,174
JBrowse link
G Tcf7 transcription factor 7, T cell specific acts_upstream_of_or_within IGI (MGI:3042541|PMID:15057272) MGI PMID:15057272 MGI:3042541 NCBI chr11:52,246,527...52,283,383
Ensembl chr11:52,252,371...52,283,331
JBrowse link
G Tcf7l2 transcription factor 7 like 2, T cell specific, HMG box acts_upstream_of_or_within IGI (MGI:3042541|PMID:15057272) MGI PMID:15057272 MGI:3042541 NCBI chr19:55,741,797...55,933,659
Ensembl chr19:55,741,820...55,933,654
JBrowse link
embryonic ectodermal digestive tract development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Vps52 VPS52 GARP complex subunit acts_upstream_of_or_within IMP (MGI:5449815|PMID:23142660) MGI PMID:23142660 MGI:5449815 NCBI chr17:33,955,779...33,967,038
Ensembl chr17:33,955,812...33,967,035
JBrowse link
embryonic ectodermal digestive tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxf1 forkhead box F1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 8:121,084,386...121,088,154
Ensembl chr 8:121,084,386...121,088,144
JBrowse link
embryonic foregut morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr2b activin receptor IIB acts_upstream_of_or_within IMP (MGI:1861876|PMID:10921901) MGI PMID:10921901 MGI:1861876 NCBI chr 9:119,401,583...119,442,148
Ensembl chr 9:119,402,118...119,434,995
JBrowse link
G Ctnnb1 catenin (cadherin associated protein), beta 1 acts_upstream_of_or_within IMP (MGI:3820452|PMID:18692041) MGI PMID:18692041 MGI:3820452 NCBI chr 9:120,933,400...120,960,507
Ensembl chr 9:120,929,216...120,960,507
JBrowse link
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 acts_upstream_of_or_within IMP (MGI:3821807|PMID:18794329) MGI PMID:18794329 MGI:3821807 NCBI chr 1:119,545,032...119,649,096
Ensembl chr 1:119,545,037...119,649,000
JBrowse link
G Foxf1 forkhead box F1 acts_upstream_of_or_within IMP (MGI:2135612|PMID:11493558) MGI PMID:11493558 MGI:2135612 NCBI chr 8:121,084,386...121,088,154
Ensembl chr 8:121,084,386...121,088,144
JBrowse link
G Foxp4 forkhead box P4 acts_upstream_of_or_within IMP (MGI:3054576|PMID:15361625) MGI PMID:15361625 MGI:3054576 NCBI chr17:47,867,133...47,924,632
Ensembl chr17:47,867,133...47,924,645
JBrowse link
G Gata4 GATA binding protein 4 acts_upstream_of_or_within IMP (MGI:87489|PMID:9136933)
(MGI:87488|PMID:9136932)
MGI PMID:9136932 PMID:9136933 MGI:87488 MGI:87489 NCBI chr14:63,198,914...63,271,712
Ensembl chr14:63,198,922...63,271,692
JBrowse link
G Nckap1 NCK-associated protein 1 acts_upstream_of_or_within IMP (MGI:3701029|PMID:16831833) MGI PMID:16831833 MGI:3701029 NCBI chr 2:80,500,512...80,581,182
Ensembl chr 2:80,500,512...80,581,380
JBrowse link
G Shh sonic hedgehog acts_upstream_of_or_within IMP (MGI:1277744|PMID:9731532) MGI PMID:9731532 MGI:1277744 NCBI chr 5:28,456,840...28,467,101
Ensembl chr 5:28,456,815...28,467,256
JBrowse link
G Smad2 SMAD family member 2 acts_upstream_of_or_within IGI (MGI:3618021|PMID:15183723) MGI PMID:15183723 MGI:3618021 NCBI chr18:76,241,090...76,311,748
Ensembl chr18:76,241,580...76,310,963
JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of_or_within IGI (MGI:3618021|PMID:15183723) MGI PMID:15183723 MGI:3618021 NCBI chr 9:63,646,766...63,757,994
Ensembl chr 9:63,646,767...63,757,994
JBrowse link
G Sox17 SRY (sex determining region Y)-box 17 involved_in
acts_upstream_of_or_within
IMP (MGI:4946573|PMID:21305474)
(MGI:4355651|PMID:19619492)
(MGI:4415813|PMID:18462699)
BHF-UCL
MGI
PMID:18462699 PMID:19619492 PMID:21305474 MGI:4355651 MGI:4415813 MGI:4946573 NCBI chr 1:4,490,928...4,497,426
Ensembl chr 1:4,490,931...4,497,354
JBrowse link
embryonic hindgut morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dact1 dishevelled-binding antagonist of beta-catenin 1 involved_in IMP (MGI:4457465|PMID:20145239) UniProt PMID:20145239 MGI:4457465 NCBI chr12:71,309,884...71,320,107
Ensembl chr12:71,309,884...71,320,107
JBrowse link
G Hoxa13 homeobox A13 involved_in ISO RGD
MGI
PMID:17161201 GO_REF:0000096 MGI:4417868 RGD:1599527 NCBI chr 6:52,258,853...52,260,880
Ensembl chr 6:52,257,694...52,260,880
JBrowse link
G Hoxd13 homeobox D13 involved_in ISO RGD
MGI
PMID:17161201 GO_REF:0000096 MGI:4417868 RGD:1599527 NCBI chr 2:74,668,225...74,671,603
Ensembl chr 2:74,668,310...74,671,599
JBrowse link
G Tcf7 transcription factor 7, T cell specific acts_upstream_of_or_within IGI (MGI:3042541|PMID:15057272) MGI PMID:15057272 MGI:3042541 NCBI chr11:52,246,527...52,283,383
Ensembl chr11:52,252,371...52,283,331
JBrowse link
G Tcf7l2 transcription factor 7 like 2, T cell specific, HMG box acts_upstream_of_or_within IGI (MGI:3042541|PMID:15057272) MGI PMID:15057272 MGI:3042541 NCBI chr19:55,741,797...55,933,659
Ensembl chr19:55,741,820...55,933,654
JBrowse link
endodermal digestive tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within IMP (MGI:5285062|PMID:21550054) MGI PMID:21550054 MGI:5285062 NCBI chr 7:130,162,451...130,266,808
Ensembl chr 7:130,162,451...133,123,350
JBrowse link
G Id2 inhibitor of DNA binding 2 acts_upstream_of_or_within IEP (PMID:16888283) UniProt PMID:16888283 NCBI chr12:25,093,799...25,096,092
Ensembl chr12:25,093,799...25,097,140
JBrowse link
G Pitx2 paired-like homeodomain transcription factor 2 acts_upstream_of_or_within IMP (MGI:5285062|PMID:21550054) MGI PMID:21550054 MGI:5285062 NCBI chr 3:129,199,878...129,219,594
Ensembl chr 3:129,199,878...129,219,591
JBrowse link
G Sox17 SRY (sex determining region Y)-box 17 involved_in IMP (MGI:4946573|PMID:21305474) BHF-UCL PMID:21305474 MGI:4946573 NCBI chr 1:4,490,928...4,497,426
Ensembl chr 1:4,490,931...4,497,354
JBrowse link
enteric smooth muscle cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ednrb endothelin receptor type B involved_in IDA (MGI:1330409|PMID:10021336) BHF-UCL PMID:10021336 MGI:1330409 NCBI chr14:103,814,615...103,844,508
Ensembl chr14:103,814,625...103,844,402
JBrowse link
foregut morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Notch1 notch 1 acts_upstream_of_or_within IMP (MGI:3603059|PMID:16107537) MGI PMID:16107537 MGI:3603059 NCBI chr 2:26,457,902...26,503,822
Ensembl chr 2:26,457,903...26,516,663
JBrowse link
hindgut development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ift172 intraflagellar transport 172 acts_upstream_of_or_within IMP (MGI:5285455|PMID:21653639) MGI PMID:21653639 MGI:5285455 NCBI chr 5:31,253,279...31,291,391
Ensembl chr 5:31,253,277...31,291,116
JBrowse link
hindgut morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli2 GLI-Kruppel family member GLI2 acts_upstream_of_or_within IGI
IMP
(MGI:2148409|PMID:11485934) MGI PMID:11485934 MGI:2148409 NCBI chr 1:118,834,061...119,054,405
Ensembl chr 1:118,834,132...119,053,619
JBrowse link
G Gli3 GLI-Kruppel family member GLI3 acts_upstream_of_or_within IGI (MGI:2148409|PMID:11485934) MGI PMID:11485934 MGI:2148409 NCBI chr13:15,463,723...15,730,026
Ensembl chr13:15,463,235...15,730,026
JBrowse link
G Shh sonic hedgehog acts_upstream_of_or_within IMP (MGI:2148409|PMID:11485934) MGI PMID:11485934 MGI:2148409 NCBI chr 5:28,456,840...28,467,101
Ensembl chr 5:28,456,815...28,467,256
JBrowse link
G Wnt5a wingless-type MMTV integration site family, member 5A acts_upstream_of_or_within IMP (MGI:3822053|PMID:18804104) MGI PMID:18804104 MGI:3822053 NCBI chr14:28,504,543...28,527,448
Ensembl chr14:28,504,750...28,527,448
JBrowse link
intestinal epithelial cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C1galt1 core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase, 1 acts_upstream_of_or_within IMP (MGI:5002772|PMID:21383503) MGI PMID:21383503 MGI:5002772 NCBI chr 6:7,845,224...7,872,042
Ensembl chr 6:7,844,842...7,875,687
JBrowse link
G Cdh1 cadherin 1 acts_upstream_of_or_within IMP (MGI:5449145|PMID:22766025) MGI PMID:22766025 MGI:5449145 NCBI chr 8:106,603,350...106,670,247
Ensembl chr 8:106,603,351...106,670,246
JBrowse link
G Dicer1 dicer 1, ribonuclease type III acts_upstream_of_or_within IGI (MGI:4946569|PMID:21307095) MGI PMID:21307095 MGI:4946569 NCBI chr12:104,687,740...104,751,968
Ensembl chr12:104,687,742...104,751,952
JBrowse link
G Gsdmc2 gasdermin C2 acts_upstream_of_or_within IEP (PMID:17350798) UniProt PMID:17350798 NCBI chr15:63,824,328...63,845,193
Ensembl chr15:63,824,346...63,845,177
JBrowse link
G Il6st interleukin 6 signal transducer involved_in ISO
IDA
(MGI:5629863|PMID:25731159) MGI
UniProt
PMID:25731159 GO_REF:0000096 MGI:4834177 MGI:5629863 NCBI chr13:112,464,070...112,506,860
Ensembl chr13:112,464,070...112,510,086
JBrowse link
G Klf5 Kruppel-like factor 5 acts_upstream_of_or_within IMP (MGI:5471906|PMID:23266329) MGI PMID:23266329 MGI:5471906 NCBI chr14:99,298,691...99,313,412
Ensembl chr14:99,298,691...99,315,036
JBrowse link
G Mir203 microRNA 203 acts_upstream_of_or_within IDA (MGI:4946569|PMID:21307095) MGI PMID:21307095 MGI:4946569 NCBI chr12:112,130,880...112,130,955
Ensembl chr12:112,130,880...112,130,955
JBrowse link
G Mir7-1 microRNA 7-1 acts_upstream_of_or_within IDA (MGI:4946569|PMID:21307095) MGI PMID:21307095 MGI:4946569 NCBI chr13:58,392,779...58,392,886
Ensembl chr13:58,392,779...58,392,886
JBrowse link
G Mir7-2 microRNA 7-2 acts_upstream_of_or_within IDA (MGI:4946569|PMID:21307095) MGI PMID:21307095 MGI:4946569 NCBI chr 7:78,888,277...78,888,373
Ensembl chr 7:78,888,277...78,888,373
JBrowse link
G Nkx3-2 NK3 homeobox 2 acts_upstream_of_or_within IGI (MGI:4946569|PMID:21307095) MGI PMID:21307095 MGI:4946569 NCBI chr 5:41,761,483...41,764,220
Ensembl chr 5:41,761,483...41,764,501
JBrowse link
G Prdm1 PR domain containing 1, with ZNF domain acts_upstream_of_or_within IMP (MGI:5014435|PMID:21670299) MGI PMID:21670299 MGI:5014435 NCBI chr10:44,437,174...44,528,558
Ensembl chr10:44,437,177...44,528,501
JBrowse link
G Spdef SAM pointed domain containing ets transcription factor acts_upstream_of_or_within IMP (MGI:4410300|PMID:19549527) MGI PMID:19549527 MGI:4410300 NCBI chr17:27,714,446...27,731,003
Ensembl chr17:27,714,352...27,728,955
JBrowse link
G Src Rous sarcoma oncogene involved_in ISO
IDA
(MGI:5629863|PMID:25731159) MGI
UniProt
PMID:25731159 GO_REF:0000096 MGI:4834177 MGI:5629863 NCBI chr 2:157,423,906...157,471,838
Ensembl chr 2:157,418,444...157,471,862
JBrowse link
G Tigar Trp53 induced glycolysis regulatory phosphatase acts_upstream_of_or_within IMP (MGI:5498602|PMID:23726973) MGI PMID:23726973 MGI:5498602 NCBI chr 6:127,085,116...127,109,552
Ensembl chr 6:127,085,116...127,109,557
JBrowse link
G Yap1 yes-associated protein 1 involved_in IDA
ISO
(MGI:5629863|PMID:25731159) UniProt
MGI
PMID:25731159 GO_REF:0000096 MGI:4834177 MGI:5629863 NCBI chr 9:7,931,999...8,004,638
Ensembl chr 9:7,931,999...8,004,596
JBrowse link
G Yipf6 Yip1 domain family, member 6 acts_upstream_of_or_within IMP (MGI:5437477|PMID:22802641) MGI PMID:22802641 MGI:5437477 NCBI chr  X:98,936,316...98,949,021
Ensembl chr  X:98,936,316...98,949,017
JBrowse link
intestinal epithelial cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cbfa2t2 CBFA2/RUNX1 translocation partner 2 involved_in IMP (MGI:5629454|PMID:25398765) UniProt PMID:25398765 MGI:5629454 NCBI chr 2:154,436,098...154,539,356
Ensembl chr 2:154,436,481...154,539,356
JBrowse link
G Cdx2 caudal type homeobox 2 involved_in IMP (MGI:5301472|PMID:22015720) UniProt PMID:22015720 MGI:5301472 NCBI chr 5:147,300,900...147,307,249
Ensembl chr 5:147,300,805...147,307,270
JBrowse link
G Gata4 GATA binding protein 4 acts_upstream_of_or_within ISO (MGI:1206067|PMID:9566909) MGI PMID:9566909 MGI:1206067 NCBI chr14:63,198,914...63,271,712
Ensembl chr14:63,198,922...63,271,692
JBrowse link
G Gata5 GATA binding protein 5 acts_upstream_of_or_within ISO (MGI:1206067|PMID:9566909) MGI PMID:9566909 MGI:1206067 NCBI chr 2:180,325,088...180,335,503
Ensembl chr 2:180,325,133...180,334,699
JBrowse link
G Gata6 GATA binding protein 6 acts_upstream_of_or_within ISO (MGI:1206067|PMID:9566909) MGI PMID:9566909 MGI:1206067 NCBI chr18:11,052,510...11,085,636
Ensembl chr18:11,052,064...11,085,635
JBrowse link
G Ptk6 PTK6 protein tyrosine kinase 6 involved_in IMP (MGI:3640030|PMID:16782882) UniProt PMID:16782882 MGI:3640030 NCBI chr 2:181,195,124...181,202,789
Ensembl chr 2:181,193,721...181,202,789
JBrowse link
G Sav1 salvador family WW domain containing 1 acts_upstream_of_or_within IMP (MGI:3785211|PMID:18369314) MGI PMID:18369314 MGI:3785211 NCBI chr12:69,965,009...69,988,141
Ensembl chr12:69,965,012...69,987,002
JBrowse link
intestinal epithelial cell maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdkn1a cyclin-dependent kinase inhibitor 1A (P21) ISO RGD PMID:20466941 RGD:8662316 NCBI chr17:29,090,979...29,100,722
Ensembl chr17:29,090,976...29,100,727
JBrowse link
G Hif1a hypoxia inducible factor 1, alpha subunit acts_upstream_of_or_within IMP (MGI:4830408|PMID:20808783) MGI PMID:20808783 MGI:4830408 NCBI chr12:73,901,324...73,947,554
Ensembl chr12:73,901,375...73,947,530
JBrowse link
G Hoxa5 homeobox A5 acts_upstream_of_or_within IMP (MGI:1349338|PMID:10564089) MGI PMID:10564089 MGI:1349338 NCBI chr 6:52,201,754...52,204,587
Ensembl chr 6:52,201,754...52,204,587
JBrowse link
G Tyms thymidylate synthase ISO RGD PMID:1260861 RGD:2317427 NCBI chr 5:30,038,546...30,073,645
Ensembl chr 5:30,058,202...30,073,617
JBrowse link
midgut development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a1 aldehyde dehydrogenase family 1, subfamily A1 ISO RGD PMID:15964596 RGD:1643113 NCBI chr19:20,492,583...20,643,463
Ensembl chr19:20,492,715...20,643,465
JBrowse link
G Aldh1a2 aldehyde dehydrogenase family 1, subfamily A2 ISO RGD PMID:15964596 RGD:1643113 NCBI chr 9:71,215,789...71,296,243
Ensembl chr 9:71,215,789...71,296,243
JBrowse link
G Arg2 arginase type II ISO RGD PMID:10050048 RGD:4144052 NCBI chr12:79,130,788...79,156,301
Ensembl chr12:79,130,777...79,156,301
JBrowse link
G Asl argininosuccinate lyase ISO RGD PMID:9544996 RGD:4139911 NCBI chr 5:130,011,258...130,024,381
Ensembl chr 5:130,011,258...130,029,247
JBrowse link
G Ass1 argininosuccinate synthetase 1 ISO RGD PMID:9544996 RGD:4139911 NCBI chr 2:31,470,270...31,520,670
Ensembl chr 2:31,470,207...31,520,672
JBrowse link
G Casp1 caspase 1 ISO RGD PMID:12396474 RGD:5130192 NCBI chr 9:5,298,517...5,307,281
Ensembl chr 9:5,298,508...5,307,290
JBrowse link
G Cps1 carbamoyl-phosphate synthetase 1 ISO RGD PMID:9544996 RGD:4139911 NCBI chr 1:67,122,426...67,231,267
Ensembl chr 1:67,123,026...67,231,259
JBrowse link
G Ctnnb1 catenin (cadherin associated protein), beta 1 ISO RGD PMID:17356920 RGD:2289844 NCBI chr 9:120,933,400...120,960,507
Ensembl chr 9:120,929,216...120,960,507
JBrowse link
G Dab1 disabled 1 ISO RGD PMID:19946030 RGD:2317766 NCBI chr 4:103,619,500...104,744,844
Ensembl chr 4:103,619,359...104,744,844
JBrowse link
G Egfr epidermal growth factor receptor ISO RGD PMID:7926492 RGD:10395256 NCBI chr11:16,752,203...16,913,907
Ensembl chr11:16,752,203...16,918,158
JBrowse link
G Foxf1 forkhead box F1 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr 8:121,084,386...121,088,154
Ensembl chr 8:121,084,386...121,088,144
JBrowse link
G Hmgcs2 3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2 ISO RGD PMID:8620869 RGD:2326125 NCBI chr 3:98,280,431...98,310,738
Ensembl chr 3:98,280,435...98,310,738
JBrowse link
G Otc ornithine transcarbamylase ISO RGD PMID:9544996 RGD:4139911 NCBI chr  X:10,252,230...10,321,024
Ensembl chr  X:10,252,305...10,321,024
JBrowse link
G Reg1 regenerating islet-derived 1 ISO RGD PMID:7720628 RGD:9850133 NCBI chr 6:78,425,983...78,428,668
Ensembl chr 6:78,422,711...78,428,667
JBrowse link
G Reg3b regenerating islet-derived 3 beta ISO RGD PMID:7720628 RGD:9850133 NCBI chr 6:78,370,885...78,373,466
Ensembl chr 6:78,370,657...78,373,466
JBrowse link
G Reln reelin ISO RGD PMID:19946030 RGD:2317766 NCBI chr 5:21,884,454...22,344,705
Ensembl chr 5:21,884,454...22,344,702
JBrowse link
G Rxra retinoid X receptor alpha ISO RGD PMID:15964596 RGD:1643113 NCBI chr 2:27,676,445...27,763,319
Ensembl chr 2:27,676,440...27,762,957
JBrowse link
G Smo smoothened, frizzled class receptor involved_in IMP (MGI:5142377|PMID:11517919) BHF-UCL PMID:11517919 MGI:5142377 NCBI chr 6:29,735,497...29,761,366
Ensembl chr 6:29,735,503...29,761,365
JBrowse link
G Wnt5a wingless-type MMTV integration site family, member 5A acts_upstream_of_or_within IMP (MGI:3833777|PMID:19100728) MGI PMID:19100728 MGI:3833777 NCBI chr14:28,504,543...28,527,448
Ensembl chr14:28,504,750...28,527,448
JBrowse link
negative regulation of stomach neuroendocrine cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hes1 hes family bHLH transcription factor 1 acts_upstream_of_or_within IMP (MGI:3804618|PMID:18173746) MGI PMID:18173746 MGI:3804618 NCBI chr16:30,065,357...30,067,796
Ensembl chr16:30,064,384...30,067,796
JBrowse link
negative regulation of Wnt signaling pathway involved in digestive tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sfrp5 secreted frizzled-related sequence protein 5 involved_in ISO MGI GO_REF:0000096 MGI:4834177 NCBI chr19:42,197,971...42,202,252
Ensembl chr19:42,197,971...42,202,252
JBrowse link
pharynx development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crkl v-crk avian sarcoma virus CT10 oncogene homolog-like acts_upstream_of_or_within IMP (MGI:6102264|PMID:25565927) MGI PMID:25565927 MGI:6102264 NCBI chr16:17,451,985...17,487,440
Ensembl chr16:17,451,987...17,487,434
JBrowse link
G Foxe1 forkhead box E1 involved_in ISO (PMID:15494458) UniProt PMID:15494458 NCBI chr 4:46,343,644...46,345,774
Ensembl chr 4:46,343,609...46,346,412
JBrowse link
G Tbx2 T-box 2 involved_in IMP (MGI:3487212|PMID:15459098) BHF-UCL PMID:15459098 MGI:3487212 NCBI chr11:85,832,615...85,841,948
Ensembl chr11:85,832,551...85,841,948
JBrowse link
post-embryonic digestive tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nkx2-3 NK2 homeobox 3 acts_upstream_of_or_within IMP (MGI:1888604|PMID:10926756) MGI PMID:10926756 MGI:1888604 NCBI chr19:43,612,325...43,615,892
Ensembl chr19:43,612,325...43,615,892
JBrowse link
posterior midgut development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ednrb endothelin receptor type B acts_upstream_of_or_within IMP (MGI:77408|PMID:8582288) MGI PMID:8582288 MGI:77408 NCBI chr14:103,814,615...103,844,508
Ensembl chr14:103,814,625...103,844,402
JBrowse link
stomach development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within IMP (MGI:6160687|PMID:29700203) MGI PMID:29700203 MGI:6160687 NCBI chr15:53,068,261...53,346,183
Ensembl chr15:53,064,038...53,346,159
JBrowse link
G Kcnq1 potassium voltage-gated channel, subfamily Q, member 1 involved_in IMP (MGI:3512716|PMID:15385447) MGI PMID:15385447 MGI:3512716 NCBI chr 7:143,106,877...143,427,050
Ensembl chr 7:143,106,362...143,427,042
JBrowse link
stomach neuroendocrine cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl1 achaete-scute family bHLH transcription factor 1 acts_upstream_of_or_within IMP (MGI:3804618|PMID:18173746) MGI PMID:18173746 MGI:3804618 NCBI chr10:87,490,819...87,493,660
Ensembl chr10:87,490,819...87,493,660
JBrowse link
visceral mesoderm-endoderm interaction involved in midgut development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxl1 forkhead box L1 acts_upstream_of_or_within IMP (MGI:893314|PMID:9203584) MGI PMID:9203584 MGI:893314 NCBI chr 8:121,127,685...121,130,644
Ensembl chr 8:121,127,940...121,130,644
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 28599
    multicellular organismal process 8886
      multicellular organism development 5798
        tube development 1260
          digestive tract development 166
            determination of digestive tract left/right asymmetry + 7
            digestive tract mesoderm development 1
            digestive tract morphogenesis + 57
            ectodermal digestive tract development + 2
            embryonic digestive tract development + 37
            enteric smooth muscle cell differentiation 1
            hindgut development + 10
            intestinal epithelial cell differentiation + 27
            midgut development + 21
            pharynx development + 3
            stomach development + 5
Path 2
Term Annotations click to browse term
  biological_process 28599
    developmental process 7034
      anatomical structure development 6424
        multicellular organism development 5798
          system development 5457
            digestive system development 180
              digestive tract development 166
                determination of digestive tract left/right asymmetry + 7
                digestive tract mesoderm development 1
                digestive tract morphogenesis + 57
                ectodermal digestive tract development + 2
                embryonic digestive tract development + 37
                enteric smooth muscle cell differentiation 1
                hindgut development + 10
                intestinal epithelial cell differentiation + 27
                midgut development + 21
                pharynx development + 3
                stomach development + 5
paths to the root