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ONTOLOGY REPORT - ANNOTATIONS


Term:digestive tract development
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Accession:GO:0048565 term browser browse the term
Definition:The process whose specific outcome is the progression of the digestive tract over time, from its formation to the mature structure. The digestive tract is the anatomical structure through which food passes and is processed.
Synonyms:narrow_synonym: intestinal development;   intestine development
 broad_synonym: gut development


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digestive tract development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALX4 ALX homeobox 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1095762|PMID:9268572) Ensembl
MGI
PMID:9268572 GO_REF:0000107 MGI:1095762 NCBI chr11:44,260,440...44,310,139
Ensembl chr11:44,260,440...44,310,139
JBrowse link
G CCKBR cholecystokinin B receptor involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3606849|PMID:15476751) Ensembl
MGI
PMID:15476751 GO_REF:0000107 MGI:3606849 NCBI chr11:6,259,838...6,272,127
Ensembl chr11:6,259,806...6,272,127
JBrowse link
G CCNB1 cyclin B1 involved_in IEA
ISO
perinatal small intestine Ensembl
RGD
PMID:17692466 GO_REF:0000107 RGD:2316322 NCBI chr 5:69,167,150...69,178,245
Ensembl chr 5:69,167,135...69,178,245
JBrowse link
G CD36 CD36 molecule ISO RGD PMID:11595646 RGD:628450 NCBI chr 7:80,602,207...80,679,277
Ensembl chr 7:80,369,575...80,679,277
JBrowse link
G CHD8 chromodomain helicase DNA binding protein 8 involved_in
acts_upstream_of_or_within
IMP
ISO
(PMID:24998929)
(MGI:5792969|PMID:27602517)
GO_Central
MGI
PMID:24998929 PMID:27602517 MGI:5792969 NCBI chr14:21,385,199...21,456,123
Ensembl chr14:21,385,194...21,456,126
JBrowse link
G CKMT1B creatine kinase, mitochondrial 1B ISO RGD PMID:8086475 RGD:11565082 NCBI chr15:43,592,857...43,599,406
Ensembl chr15:43,593,054...43,604,901
JBrowse link
G CLDN18 claudin 18 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5489769|PMID:22437732) Ensembl
MGI
PMID:22437732 GO_REF:0000107 MGI:5489769 NCBI chr 3:137,998,816...138,033,649
Ensembl chr 3:137,998,735...138,033,655
JBrowse link
G CLMP CXADR like membrane protein involved_in IMP (PMID:22155368) UniProt PMID:22155368 NCBI chr11:123,069,872...123,195,248
Ensembl chr11:123,069,872...123,195,248
JBrowse link
G COBL cordon-bleu WH2 repeat protein involved_in
acts_upstream_of_or_within
ISS
ISO
(PMID:7586755) BHF-UCL
BHF-UCL
PMID:7586755 GO_REF:0000024 NCBI chr 7:51,016,212...51,316,809
Ensembl chr 7:51,016,212...51,316,818
JBrowse link
G COL3A1 collagen type III alpha 1 chain acts_upstream_of_or_within ISO (MGI:86656|PMID:9050868) MGI PMID:9050868 MGI:86656 NCBI chr 2:188,974,373...189,012,746
Ensembl chr 2:188,974,373...189,012,746
JBrowse link
G CYP1A1 cytochrome P450 family 1 subfamily A member 1 involved_in IEA
ISO
Ensembl
RGD
PMID:12162855 GO_REF:0000107 RGD:727721 NCBI chr15:74,719,542...74,725,528
Ensembl chr15:74,719,542...74,725,536
JBrowse link
G DCHS1 dachsous cadherin-related 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4939936|PMID:21303848) Ensembl
MGI
PMID:21303848 GO_REF:0000107 MGI:4939936 NCBI chr11:6,621,330...6,655,809
Ensembl chr11:6,621,330...6,655,809
JBrowse link
G DICER1 dicer 1, ribonuclease III acts_upstream_of_or_within ISO (MGI:4946569|PMID:21307095) MGI PMID:21307095 MGI:4946569 NCBI chr14:95,086,228...95,158,263
Ensembl chr14:95,086,228...95,158,010
JBrowse link
G EP300 E1A binding protein p300 ISO RGD PMID:17916272 RGD:2312267 NCBI chr22:41,092,592...41,180,077
Ensembl chr22:41,092,592...41,180,077
JBrowse link
G FAT4 FAT atypical cadherin 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4939936|PMID:21303848) Ensembl
MGI
PMID:21303848 GO_REF:0000107 MGI:4939936 NCBI chr 4:125,314,918...125,492,932
Ensembl chr 4:125,314,918...125,492,932
JBrowse link
G FGF10 fibroblast growth factor 10 acts_upstream_of_or_within ISO (MGI:3052435|PMID:15234214) MGI PMID:15234214 MGI:3052435 NCBI chr 5:44,300,247...44,389,706
Ensembl chr 5:44,300,247...44,389,706
JBrowse link
G FGFR2 fibroblast growth factor receptor 2 involved_in
acts_upstream_of_or_within
ISS
ISO
(MGI:3052435|PMID:15234214) UniProt
MGI
PMID:15234214 GO_REF:0000024 MGI:3052435 NCBI chr10:121,478,330...121,598,458
Ensembl chr10:121,478,332...121,598,458
JBrowse link
G FOXF1 forkhead box F1 involved_in IMP (PMID:19500772) DFLAT PMID:19500772 NCBI chr16:86,510,527...86,515,422
Ensembl chr16:86,510,527...86,515,422
JBrowse link
G HRH2 histamine receptor H2 acts_upstream_of_or_within ISO (MGI:1860000|PMID:10862789)
(MGI:3606849|PMID:15476751)
MGI PMID:10862789 PMID:15476751 MGI:1860000 MGI:3606849 NCBI chr 5:175,657,762...175,710,756
Ensembl chr 5:175,658,030...175,710,756
JBrowse link
G KIT KIT proto-oncogene, receptor tyrosine kinase involved_in ISS UniProt GO_REF:0000024 NCBI chr 4:54,657,957...54,740,715
Ensembl chr 4:54,657,918...54,740,715
JBrowse link
G LGR4 leucine rich repeat containing G protein-coupled receptor 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5581372|PMID:24680895) Ensembl
MGI
PMID:24680895 GO_REF:0000107 MGI:5581372 NCBI chr11:27,365,961...27,472,790
Ensembl chr11:27,365,961...27,472,790
JBrowse link
G MIXL1 Mix paired-like homeobox involved_in
acts_upstream_of_or_within
ISS
ISO
(MGI:2181739|PMID:12117810) BHF-UCL
MGI
PMID:12117810 GO_REF:0000024 MGI:2181739 NCBI chr 1:226,223,664...226,227,060
Ensembl chr 1:226,223,618...226,227,060
JBrowse link
G MUC4 mucin 4, cell surface associated ISO RGD PMID:15389518 RGD:2303738 NCBI chr 3:195,746,771...195,811,929
Ensembl chr 3:195,746,765...195,811,973
JBrowse link
G MYOCD myocardin involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4941650|PMID:21357509) Ensembl
MGI
PMID:21357509 GO_REF:0000107 MGI:4941650 NCBI chr17:12,665,890...12,768,949
Ensembl chr17:12,665,890...12,768,949
JBrowse link
G NAT2 N-acetyltransferase 2 ISO RGD PMID:18799802 RGD:2303764 NCBI chr 8:18,386,585...18,401,219
Ensembl chr 8:18,391,282...18,401,218
JBrowse link
G NIPBL NIPBL cohesin loading factor involved_in IBA (PMID:21873635) GO_Central PMID:21873635 NCBI chr 5:36,876,769...37,066,413
Ensembl chr 5:36,876,769...37,066,413
JBrowse link
G NKX2-2 NK2 homeobox 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3835247|PMID:18987169) Ensembl
MGI
PMID:18987169 GO_REF:0000107 MGI:3835247 NCBI chr20:21,511,010...21,514,064
Ensembl chr20:21,511,017...21,514,064
JBrowse link
G NKX2-3 NK2 homeobox 3 acts_upstream_of_or_within ISO (MGI:1334782|PMID:10207146)
(MGI:1888604|PMID:10926756)
MGI PMID:10207146 PMID:10926756 MGI:1334782 MGI:1888604 NCBI chr10:99,532,942...99,536,524
Ensembl chr10:99,532,942...99,536,524
JBrowse link
G NKX2-6 NK2 homeobox 6 involved_in
acts_upstream_of_or_within
ISS
ISO
(PMID:9545560) BHF-UCL
BHF-UCL
PMID:9545560 GO_REF:0000024 NCBI chr 8:23,701,740...23,706,756
Ensembl chr 8:23,701,740...23,706,756
JBrowse link
G NR1H4 nuclear receptor subfamily 1 group H member 4 ISO RGD PMID:11984532 RGD:1625207 NCBI chr12:100,473,866...100,564,414
Ensembl chr12:100,473,708...100,564,414
JBrowse link
G NTS neurotensin ISO RGD PMID:8571204 RGD:9743850 NCBI chr12:85,874,295...85,882,992
Ensembl chr12:85,874,295...85,882,992
JBrowse link
G OXTR oxytocin receptor involved_in IEA
ISO
Ensembl
RGD
PMID:19003903 GO_REF:0000107 RGD:2303961 NCBI chr 3:8,750,381...8,769,613
Ensembl chr 3:8,750,381...8,769,628
JBrowse link
G PDGFA platelet derived growth factor subunit A involved_in
acts_upstream_of_or_within
ISO (MGI:1860627|PMID:10903171)
(MGI:5543868|PMID:23938297)
UniProt
MGI
PMID:10903171 PMID:23938297 MGI:1860627 MGI:5543868 NCBI chr 7:497,245...520,668
Ensembl chr 7:497,258...520,296
JBrowse link
G PDGFC platelet derived growth factor C involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5543868|PMID:23938297) Ensembl
MGI
PMID:23938297 GO_REF:0000107 MGI:5543868 NCBI chr 4:156,760,454...156,971,799
Ensembl chr 4:156,760,454...156,971,799
JBrowse link
G PDX1 pancreatic and duodenal homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4355651|PMID:19619492) Ensembl
MGI
PMID:19619492 GO_REF:0000107 MGI:4355651 NCBI chr13:27,919,982...27,926,313
Ensembl chr13:27,920,000...27,926,313
JBrowse link
G PKD1 polycystin 1, transient receptor potential channel interacting involved_in IEP (PMID:11891195) UniProt PMID:11891195 NCBI chr16:2,088,708...2,135,898
Ensembl chr16:2,088,708...2,135,898
JBrowse link
G RB1 RB transcriptional corepressor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3703460|PMID:17257418) Ensembl
MGI
PMID:17257418 GO_REF:0000107 MGI:3703460 NCBI chr13:48,303,751...48,481,890
Ensembl chr13:48,303,744...48,599,436
JBrowse link
G SLC4A2 solute carrier family 4 member 2 involved_in IEA
ISO
Ensembl
RGD
PMID:8770049 GO_REF:0000107 RGD:9999233 NCBI chr 7:151,058,200...151,076,527
Ensembl chr 7:151,057,210...151,076,526
JBrowse link
G SMO smoothened, frizzled class receptor acts_upstream_of_or_within ISO (MGI:4355651|PMID:19619492) MGI PMID:19619492 MGI:4355651 NCBI chr 7:129,188,633...129,213,548
Ensembl chr 7:129,188,633...129,213,545
JBrowse link
G TGFB1 transforming growth factor beta 1 involved_in IEA
ISO
Ensembl
RGD
PMID:12815632 GO_REF:0000107 RGD:2302031 NCBI chr19:41,330,323...41,353,922
Ensembl chr19:41,301,587...41,353,922
JBrowse link
G TGFB2 transforming growth factor beta 2 ISO RGD PMID:12815632 RGD:2302031 NCBI chr 1:218,345,336...218,444,619
Ensembl chr 1:218,345,336...218,444,619
JBrowse link
G TGFB3 transforming growth factor beta 3 involved_in IEA
ISO
Ensembl
RGD
PMID:12815632 GO_REF:0000107 RGD:2302031 NCBI chr14:75,958,097...75,983,011
Ensembl chr14:75,958,097...75,983,011
JBrowse link
G TGFBR1 transforming growth factor beta receptor 1 ISO RGD PMID:12815632 RGD:2302031 NCBI chr 9:99,104,038...99,154,192
Ensembl chr 9:99,104,038...99,154,192
JBrowse link
G TGFBR2 transforming growth factor beta receptor 2 involved_in IEA
ISO
Ensembl
RGD
PMID:12815632 GO_REF:0000107 RGD:2302031 NCBI chr 3:30,606,472...30,694,142
Ensembl chr 3:30,606,601...30,694,142
JBrowse link
G THRA thyroid hormone receptor alpha ISO RGD PMID:17496154 RGD:2314319 NCBI chr17:40,062,193...40,093,867
Ensembl chr17:40,058,290...40,093,867
JBrowse link
G TK1 thymidine kinase 1 ISO RGD PMID:6701043 RGD:2317231 NCBI chr17:78,174,079...78,187,204
Ensembl chr17:78,174,091...78,187,233
JBrowse link
cloaca development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHI1 Abelson helper integration site 1 involved_in ISS UniProt GO_REF:0000024 NCBI chr 6:135,283,532...135,497,771
Ensembl chr 6:135,283,407...135,498,434
JBrowse link
cloacal septation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:17442697) Ensembl
UniProt
PMID:17442697 GO_REF:0000107 NCBI chr14:53,949,736...53,956,891
Ensembl chr14:53,949,736...53,958,761
JBrowse link
G TP63 tumor protein p63 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2387879|PMID:12368184) Ensembl
MGI
PMID:12368184 GO_REF:0000107 MGI:2387879 NCBI chr 3:189,596,746...189,897,276
Ensembl chr 3:189,631,389...189,897,276
JBrowse link
G WNT11 Wnt family member 11 involved_in IEP (PMID:9757009) UniProt PMID:9757009 NCBI chr11:76,186,325...76,210,842
Ensembl chr11:76,186,325...76,210,736
JBrowse link
determination of digestive tract left/right asymmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCDC103 coiled-coil domain containing 103 involved_in IMP (PMID:22581229) BHF-UCL PMID:22581229 NCBI chr17:44,899,729...44,905,390
Ensembl chr17:44,899,142...44,905,390
JBrowse link
G CCDC39 coiled-coil domain containing 39 involved_in IMP (PMID:22693285) BHF-UCL PMID:22693285 NCBI chr 3:180,614,008...180,679,489
Ensembl chr 3:180,614,008...180,870,933
Ensembl chr 3:180,614,008...180,870,933
JBrowse link
G CCDC40 coiled-coil domain containing 40 involved_in IMP (PMID:22693285) BHF-UCL PMID:22693285 NCBI chr17:80,036,632...80,100,613
Ensembl chr17:80,036,632...80,100,613
JBrowse link
G DNAAF1 dynein axonemal assembly factor 1 involved_in IMP (PMID:19944405) BHF-UCL PMID:19944405 NCBI chr16:84,145,266...84,178,761
Ensembl chr16:84,145,287...84,178,767
JBrowse link
G MEGF8 multiple EGF like domains 8 involved_in
acts_upstream_of_or_within
ISS
ISO
(MGI:3839019|PMID:18043505) UniProt
MGI
PMID:18043505 GO_REF:0000024 MGI:3839019 NCBI chr19:42,325,635...42,378,765
Ensembl chr19:42,325,609...42,378,769
JBrowse link
G ZIC3 Zic family member 3 involved_in IMP (PMID:9354794) BHF-UCL PMID:9354794 NCBI chr  X:137,566,127...137,577,691
Ensembl chr  X:137,566,127...137,577,691
JBrowse link
determination of intestine left/right asymmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NPHP3 nephrocystin 3 involved_in IMP (PMID:20007846) BHF-UCL PMID:20007846 NCBI chr 3:132,680,609...132,722,409
Ensembl chr 3:132,680,609...132,722,432
JBrowse link
determination of stomach left/right asymmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NPHP3 nephrocystin 3 involved_in IMP (PMID:18371931) BHF-UCL PMID:18371931 NCBI chr 3:132,680,609...132,722,409
Ensembl chr 3:132,680,609...132,722,432
JBrowse link
digestive tract mesoderm development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SHH sonic hedgehog signaling molecule ISO RGD PMID:9368764 RGD:2306312 NCBI chr 7:155,799,980...155,812,463
Ensembl chr 7:155,799,980...155,812,463
JBrowse link
digestive tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGR2 anterior gradient 2, protein disulphide isomerase family member involved_in ISS UniProt GO_REF:0000024 NCBI chr 7:16,791,811...16,804,999
Ensembl chr 7:16,791,811...16,833,433
JBrowse link
G BBS7 Bardet-Biedl syndrome 7 involved_in ISS BHF-UCL GO_REF:0000024 NCBI chr 4:121,824,329...121,870,487
Ensembl chr 4:121,824,329...121,870,487
JBrowse link
G BCL2 BCL2 apoptosis regulator involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:70264|PMID:7812968) Ensembl
MGI
PMID:7812968 GO_REF:0000107 MGI:70264 NCBI chr18:63,123,346...63,320,280
Ensembl chr18:63,123,346...63,320,128
JBrowse link
G CFC1B cripto, FRL-1, cryptic family 1B acts_upstream_of_or_within ISO (MGI:1346729|PMID:10521397) MGI PMID:10521397 MGI:1346729 NCBI chr 2:130,521,212...130,528,603
Ensembl chr 2:130,521,197...130,528,604
JBrowse link
G EGFR epidermal growth factor receptor acts_upstream_of_or_within ISO (MGI:74263|PMID:7618084) MGI PMID:7618084 MGI:74263 NCBI chr 7:55,019,017...55,211,628
Ensembl chr 7:55,019,017...55,211,628
JBrowse link
G EPHB3 EPH receptor B3 involved_in ISS UniProt GO_REF:0000024 NCBI chr 3:184,561,785...184,582,408
Ensembl chr 3:184,561,785...184,582,408
JBrowse link
G FGFR3 fibroblast growth factor receptor 3 acts_upstream_of_or_within ISO (MGI:4352984|PMID:19407216) MGI PMID:19407216 MGI:4352984 NCBI chr 4:1,793,293...1,808,872
Ensembl chr 4:1,793,293...1,808,872
JBrowse link
G GLI1 GLI family zinc finger 1 involved_in TAS (PMID:11001584) BHF-UCL PMID:11001584 NCBI chr12:57,459,785...57,472,451
Ensembl chr12:57,459,785...57,472,268
JBrowse link
G HIF1A hypoxia inducible factor 1 subunit alpha involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4830408|PMID:20808783) Ensembl
MGI
PMID:20808783 GO_REF:0000107 MGI:4830408 NCBI chr14:61,695,513...61,748,258
Ensembl chr14:61,695,513...61,748,259
JBrowse link
G IL18 interleukin 18 ISO RGD PMID:21088234 RGD:4889157 NCBI chr11:112,143,251...112,164,104
Ensembl chr11:112,143,253...112,164,096
JBrowse link
G NODAL nodal growth differentiation factor involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2155575|PMID:11311163) Ensembl
MGI
PMID:11311163 GO_REF:0000107 MGI:2155575 NCBI chr10:70,431,936...70,447,951
Ensembl chr10:70,431,936...70,447,951
JBrowse link
G PERCC1 proline and glutamate rich with coiled coil 1 involved_in ISS UniProt GO_REF:0000024 NCBI chr16:1,431,078...1,434,441
Ensembl chr16:1,431,078...1,434,441
JBrowse link
G SFRP1 secreted frizzled related protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3839161|PMID:19300477) Ensembl
MGI
PMID:19300477 GO_REF:0000107 MGI:3839161 NCBI chr 8:41,261,962...41,309,473
Ensembl chr 8:41,261,962...41,309,473
JBrowse link
G SFRP2 secreted frizzled related protein 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3839161|PMID:19300477) Ensembl
MGI
PMID:19300477 GO_REF:0000107 MGI:3839161 NCBI chr 4:153,780,591...153,789,083
Ensembl chr 4:153,780,591...153,789,083
JBrowse link
G SFRP5 secreted frizzled related protein 5 acts_upstream_of_or_within ISO (MGI:3839161|PMID:19300477) MGI PMID:19300477 MGI:3839161 NCBI chr10:97,766,751...97,771,999
Ensembl chr10:97,766,751...97,771,999
JBrowse link
G SHH sonic hedgehog signaling molecule acts_upstream_of_or_within ISO (MGI:1277744|PMID:9731532) MGI PMID:9731532 MGI:1277744 NCBI chr 7:155,799,980...155,812,463
Ensembl chr 7:155,799,980...155,812,463
JBrowse link
G SOX10 SRY-box transcription factor 10 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3699432|PMID:15843399), (MGI:56157|PMID:6512238) Ensembl
MGI
PMID:6512238 PMID:15843399 GO_REF:0000107 MGI:3699432 MGI:56157 NCBI chr22:37,972,312...37,984,555
Ensembl chr22:37,970,686...37,987,422
JBrowse link
G STRA6 signaling receptor and transporter of retinol STRA6 involved_in IMP (PMID:17273977) DFLAT PMID:17273977 NCBI chr15:74,179,466...74,212,267
Ensembl chr15:74,179,466...74,212,267
JBrowse link
G STX2 syntaxin 2 ISO RGD PMID:12464668 RGD:1298909 NCBI chr12:130,789,600...130,839,274
Ensembl chr12:130,789,600...130,839,266
JBrowse link
G TP73 tumor protein p73 acts_upstream_of_or_within ISO (MGI:1354064|PMID:10716451) MGI PMID:10716451 MGI:1354064 NCBI chr 1:3,652,516...3,736,201
Ensembl chr 1:3,652,516...3,736,201
JBrowse link
G VANGL2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO (MGI:3839161|PMID:19300477) MGI PMID:19300477 MGI:3839161 NCBI chr 1:160,400,564...160,428,674
Ensembl chr 1:160,400,564...160,428,670
JBrowse link
G WNT5A Wnt family member 5A acts_upstream_of_or_within ISO (MGI:3839161|PMID:19300477) MGI PMID:19300477 MGI:3839161 NCBI chr 3:55,465,715...55,505,261
Ensembl chr 3:55,465,715...55,490,539
JBrowse link
embryonic digestive tract development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADA adenosine deaminase involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:74163|PMID:7670465) Ensembl
MGI
PMID:7670465 GO_REF:0000107 MGI:74163 NCBI chr20:44,619,522...44,651,699
Ensembl chr20:44,619,522...44,652,233
JBrowse link
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3663954|PMID:16806149) Ensembl
MGI
PMID:16806149 GO_REF:0000107 MGI:3663954 NCBI chr15:57,953,429...58,065,711
Ensembl chr15:57,953,424...58,497,866
JBrowse link
G CXCL8 C-X-C motif chemokine ligand 8 involved_in IEP (PMID:20875417) DFLAT PMID:20875417 NCBI chr 4:73,740,569...73,743,716
Ensembl chr 4:73,740,541...73,743,716
JBrowse link
G FGF10 fibroblast growth factor 10 acts_upstream_of_or_within ISO (MGI:3611702|PMID:16308329) MGI PMID:16308329 MGI:3611702 NCBI chr 5:44,300,247...44,389,706
Ensembl chr 5:44,300,247...44,389,706
JBrowse link
G FGF9 fibroblast growth factor 9 acts_upstream_of_or_within ISO (MGI:3611702|PMID:16308329) MGI PMID:16308329 MGI:3611702 NCBI chr13:21,671,073...21,704,501
Ensembl chr13:21,671,073...21,704,498
JBrowse link
G FOXF1 forkhead box F1 acts_upstream_of_or_within ISO (MGI:3617131|PMID:16439479) MGI PMID:16439479 MGI:3617131 NCBI chr16:86,510,527...86,515,422
Ensembl chr16:86,510,527...86,515,422
JBrowse link
G FOXF2 forkhead box F2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3617131|PMID:16439479) Ensembl
MGI
PMID:16439479 GO_REF:0000107 MGI:3617131 NCBI chr 6:1,389,576...1,395,603
Ensembl chr 6:1,389,576...1,395,603
JBrowse link
G GLI2 GLI family zinc finger 2 involved_in
acts_upstream_of_or_within
ISS
ISO
(MGI:1353327|PMID:10693670) UniProt
MGI
PMID:10693670 GO_REF:0000024 MGI:1353327 NCBI chr 2:120,735,868...120,992,653
Ensembl chr 2:120,735,623...120,992,653
JBrowse link
G GLI3 GLI family zinc finger 3 involved_in
acts_upstream_of_or_within
TAS
ISO
(PMID:11001584)
(MGI:1353327|PMID:10693670)
BHF-UCL
MGI
PMID:10693670 PMID:11001584 MGI:1353327 NCBI chr 7:41,960,949...42,237,209
Ensembl chr 7:41,960,949...42,264,100
JBrowse link
G MYB MYB proto-oncogene, transcription factor acts_upstream_of_or_within ISO (MGI:1346939|PMID:10523863) MGI PMID:10523863 MGI:1346939 NCBI chr 6:135,181,308...135,219,172
Ensembl chr 6:135,181,308...135,219,173
JBrowse link
G PCSK5 proprotein convertase subtilisin/kexin type 5 involved_in IMP
ISS
IEA
(PMID:18519639)
(PMID:8940009)
BHF-UCL
Ensembl
PMID:8940009 PMID:18519639 GO_REF:0000107 NCBI chr 9:75,890,646...76,362,975
Ensembl chr 9:75,890,644...76,362,975
JBrowse link
G PKDCC protein kinase domain containing, cytoplasmic involved_in ISS UniProt GO_REF:0000024 NCBI chr 2:42,048,021...42,058,517
Ensembl chr 2:42,048,021...42,058,517
JBrowse link
G RARB retinoic acid receptor beta involved_in IMP (PMID:19443732) DFLAT PMID:19443732 NCBI chr 3:24,829,321...25,597,932
Ensembl chr 3:25,174,332...25,597,932
JBrowse link
G RARRES2 retinoic acid receptor responder 2 involved_in IMP (PMID:19443732) DFLAT PMID:19443732 NCBI chr 7:150,338,329...150,341,685
Ensembl chr 7:150,338,317...150,341,662
JBrowse link
G SALL1 spalt like transcription factor 1 involved_in IMP (PMID:18280297) UniProt PMID:18280297 NCBI chr16:51,135,982...51,151,270
Ensembl chr16:51,135,975...51,151,367
JBrowse link
G SCT secretin involved_in IEA
ISO
Ensembl
RGD
PMID:1711228 GO_REF:0000107 RGD:729899 NCBI chr11:626,095...627,692
Ensembl chr11:626,309...627,181
JBrowse link
G STRA6 signaling receptor and transporter of retinol STRA6 involved_in IMP (PMID:17273977) DFLAT PMID:17273977 NCBI chr15:74,179,466...74,212,267
Ensembl chr15:74,179,466...74,212,267
JBrowse link
G TGFB2 transforming growth factor beta 2 involved_in IEP (PMID:20875417) DFLAT PMID:20875417 NCBI chr 1:218,345,336...218,444,619
Ensembl chr 1:218,345,336...218,444,619
JBrowse link
G TNF tumor necrosis factor involved_in IEP (PMID:20875417) DFLAT PMID:20875417 NCBI chr 6:31,575,565...31,578,336
Ensembl chr 6:31,575,565...31,578,336
JBrowse link
embryonic digestive tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FGF10 fibroblast growth factor 10 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3722952|PMID:16618415)
(MGI:3040447|PMID:15017552)
Ensembl
MGI
PMID:15017552 PMID:16618415 GO_REF:0000107 MGI:3040447 MGI:3722952 NCBI chr 5:44,300,247...44,389,706
Ensembl chr 5:44,300,247...44,389,706
JBrowse link
G FGFR2 fibroblast growth factor receptor 2 involved_in
acts_upstream_of_or_within
ISS
ISO
(MGI:5285062|PMID:21550054)
(MGI:3722952|PMID:16618415), (MGI:5317412|PMID:21492869)
UniProt
MGI
PMID:16618415 PMID:21492869 PMID:21550054 GO_REF:0000024 MGI:3722952 MGI:5285062 MGI:5317412 NCBI chr10:121,478,330...121,598,458
Ensembl chr10:121,478,332...121,598,458
JBrowse link
G FOXF1 forkhead box F1 involved_in IMP (PMID:19500772) DFLAT PMID:19500772 NCBI chr16:86,510,527...86,515,422
Ensembl chr16:86,510,527...86,515,422
JBrowse link
G GATA4 GATA binding protein 4 acts_upstream_of_or_within ISO (MGI:3590399|PMID:16127717) MGI PMID:16127717 MGI:3590399 NCBI chr 8:11,676,935...11,760,002
Ensembl chr 8:11,676,959...11,760,002
JBrowse link
G GLI3 GLI family zinc finger 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3608164|PMID:16247775) Ensembl
MGI
PMID:16247775 GO_REF:0000107 MGI:3608164 NCBI chr 7:41,960,949...42,237,209
Ensembl chr 7:41,960,949...42,264,100
JBrowse link
G HLX H2.0 like homeobox involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:79044|PMID:8557196) Ensembl
MGI
PMID:8557196 GO_REF:0000107 MGI:79044 NCBI chr 1:220,879,443...220,885,059
Ensembl chr 1:220,879,431...220,885,059
JBrowse link
G HNF1B HNF1 homeobox B acts_upstream_of_or_within ISO (MGI:3807614|PMID:18635606) MGI PMID:18635606 MGI:3807614 NCBI chr17:37,686,431...37,745,059
Ensembl chr17:37,686,431...37,745,059
JBrowse link
G ID2 inhibitor of DNA binding 2 involved_in ISS UniProt GO_REF:0000024 NCBI chr 2:8,682,056...8,684,461
Ensembl chr 2:8,678,845...8,684,461
JBrowse link
G IHH Indian hedgehog signaling molecule involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1858523|PMID:10821773) Ensembl
MGI
PMID:10821773 GO_REF:0000107 MGI:1858523 NCBI chr 2:219,054,424...219,060,921
Ensembl chr 2:219,054,424...219,060,921
JBrowse link
G NIPBL NIPBL cohesin loading factor involved_in IMP (PMID:19242925), (PMID:8291537) BHF-UCL PMID:8291537 PMID:19242925 NCBI chr 5:36,876,769...37,066,413
Ensembl chr 5:36,876,769...37,066,413
JBrowse link
G OVOL2 ovo like zinc finger 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3618450|PMID:16423343) Ensembl
MGI
PMID:16423343 GO_REF:0000107 MGI:3618450 NCBI chr20:18,024,152...18,059,188
Ensembl chr20:17,956,979...18,059,188
JBrowse link
G PDGFRA platelet derived growth factor receptor alpha involved_in ISS UniProt GO_REF:0000024 NCBI chr 4:54,229,127...54,298,245
Ensembl chr 4:54,229,280...54,298,245
JBrowse link
G PITX2 paired like homeodomain 2 acts_upstream_of_or_within ISO (MGI:5285062|PMID:21550054) MGI PMID:21550054 MGI:5285062 NCBI chr 4:110,617,423...110,642,123
Ensembl chr 4:110,617,423...110,642,123
JBrowse link
G RBPMS2 RNA binding protein, mRNA processing factor 2 involved_in ISS UniProt GO_REF:0000024 NCBI chr15:64,739,891...64,775,589
Ensembl chr15:64,739,891...64,775,589
JBrowse link
G SHH sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1858523|PMID:10821773) Ensembl
MGI
PMID:10821773 GO_REF:0000107 MGI:1858523 NCBI chr 7:155,799,980...155,812,463
Ensembl chr 7:155,799,980...155,812,463
JBrowse link
G SHOX2 short stature homeobox 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3604918|PMID:16141225) Ensembl
MGI
PMID:16141225 GO_REF:0000107 MGI:3604918 NCBI chr 3:158,095,905...158,106,420
Ensembl chr 3:158,095,905...158,106,420
JBrowse link
G SIX2 SIX homeobox 2 involved_in ISS UniProt GO_REF:0000024 NCBI chr 2:45,005,182...45,009,645
Ensembl chr 2:45,005,182...45,009,452
JBrowse link
G SOX11 SRY-box transcription factor 11 involved_in ISS UniProt GO_REF:0000024 NCBI chr 2:5,692,384...5,701,385
Ensembl chr 2:5,692,384...5,701,385
JBrowse link
G TCF21 transcription factor 21 involved_in ISS
ISO
UniProt
RGD
PMID:11804032 GO_REF:0000024 RGD:727206 NCBI chr 6:133,889,113...133,895,537
Ensembl chr 6:133,889,113...133,895,553
JBrowse link
G TCF7 transcription factor 7 acts_upstream_of_or_within ISO (MGI:3042541|PMID:15057272) MGI PMID:15057272 MGI:3042541 NCBI chr 5:134,114,681...134,148,229
Ensembl chr 5:134,114,681...134,151,865
JBrowse link
G TCF7L2 transcription factor 7 like 2 acts_upstream_of_or_within ISO (MGI:3042541|PMID:15057272) MGI PMID:15057272 MGI:3042541 NCBI chr10:112,950,247...113,167,678
Ensembl chr10:112,950,247...113,167,678
JBrowse link
embryonic ectodermal digestive tract development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G VPS52 VPS52 subunit of GARP complex involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5449815|PMID:23142660) Ensembl
MGI
PMID:23142660 GO_REF:0000107 MGI:5449815 NCBI chr 6:33,250,272...33,271,965
Ensembl chr 6:33,250,272...33,272,047
JBrowse link
embryonic ectodermal digestive tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FOXF1 forkhead box F1 involved_in IMP (PMID:19500772) DFLAT PMID:19500772 NCBI chr16:86,510,527...86,515,422
Ensembl chr16:86,510,527...86,515,422
JBrowse link
embryonic foregut morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACVR2B activin A receptor type 2B acts_upstream_of_or_within ISO (MGI:1861876|PMID:10921901) MGI PMID:10921901 MGI:1861876 NCBI chr 3:38,453,890...38,493,142
Ensembl chr 3:38,453,890...38,493,142
JBrowse link
G CTNNB1 catenin beta 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3820452|PMID:18692041) Ensembl
MGI
PMID:18692041 GO_REF:0000107 MGI:3820452 NCBI chr 3:41,199,422...41,240,445
Ensembl chr 3:41,194,741...41,260,096
JBrowse link
G EPB41L5 erythrocyte membrane protein band 4.1 like 5 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3821807|PMID:18794329) Ensembl
MGI
PMID:18794329 GO_REF:0000107 MGI:3821807 NCBI chr 2:120,013,032...120,179,119
Ensembl chr 2:120,013,077...120,179,119
JBrowse link
G FOXF1 forkhead box F1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2135612|PMID:11493558) Ensembl
MGI
PMID:11493558 GO_REF:0000107 MGI:2135612 NCBI chr16:86,510,527...86,515,422
Ensembl chr16:86,510,527...86,515,422
JBrowse link
G FOXP4 forkhead box P4 acts_upstream_of_or_within ISO (MGI:3054576|PMID:15361625) MGI PMID:15361625 MGI:3054576 NCBI chr 6:41,546,381...41,602,384
Ensembl chr 6:41,546,381...41,602,384
JBrowse link
G GATA4 GATA binding protein 4 involved_in
acts_upstream_of_or_within
ISS
ISO
(MGI:87488|PMID:9136932)
(MGI:87489|PMID:9136933)
BHF-UCL
MGI
PMID:9136932 PMID:9136933 GO_REF:0000024 MGI:87488 MGI:87489 NCBI chr 8:11,676,935...11,760,002
Ensembl chr 8:11,676,959...11,760,002
JBrowse link
G NCKAP1 NCK associated protein 1 acts_upstream_of_or_within ISO (MGI:3701029|PMID:16831833) MGI PMID:16831833 MGI:3701029 NCBI chr 2:182,909,115...183,038,457
Ensembl chr 2:182,909,115...183,038,858
JBrowse link
G SHH sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1277744|PMID:9731532) Ensembl
MGI
PMID:9731532 GO_REF:0000107 MGI:1277744 NCBI chr 7:155,799,980...155,812,463
Ensembl chr 7:155,799,980...155,812,463
JBrowse link
G SMAD2 SMAD family member 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3618021|PMID:15183723) Ensembl
MGI
PMID:15183723 GO_REF:0000107 MGI:3618021 NCBI chr18:47,808,957...47,931,188
Ensembl chr18:47,808,957...47,931,146
JBrowse link
G SMAD3 SMAD family member 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3618021|PMID:15183723) Ensembl
MGI
PMID:15183723 GO_REF:0000107 MGI:3618021 NCBI chr15:67,065,602...67,195,195
Ensembl chr15:67,063,763...67,195,173
JBrowse link
G SOX17 SRY-box transcription factor 17 involved_in
acts_upstream_of_or_within
ISS
ISO
(MGI:4355651|PMID:19619492)
(MGI:4415813|PMID:18462699)
BHF-UCL
MGI
PMID:18462699 PMID:19619492 GO_REF:0000024 MGI:4355651 MGI:4415813 NCBI chr 8:54,457,935...54,460,892
Ensembl chr 8:54,457,935...54,460,892
JBrowse link
embryonic hindgut morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DACT1 dishevelled binding antagonist of beta catenin 1 involved_in ISS UniProt GO_REF:0000024 NCBI chr14:58,634,061...58,648,321
Ensembl chr14:58,633,967...58,648,321
JBrowse link
G HOXA13 homeobox A13 ISO RGD PMID:17161201 RGD:1599527 NCBI chr 7:27,194,364...27,200,091
Ensembl chr 7:27,193,503...27,200,091
JBrowse link
G HOXD13 homeobox D13 involved_in IEA
ISO
Ensembl
RGD
PMID:17161201 GO_REF:0000107 RGD:1599527 NCBI chr 2:176,087,487...176,095,944
Ensembl chr 2:176,092,721...176,095,944
JBrowse link
G TCF7 transcription factor 7 acts_upstream_of_or_within ISO (MGI:3042541|PMID:15057272) MGI PMID:15057272 MGI:3042541 NCBI chr 5:134,114,681...134,148,229
Ensembl chr 5:134,114,681...134,151,865
JBrowse link
G TCF7L2 transcription factor 7 like 2 acts_upstream_of_or_within ISO (MGI:3042541|PMID:15057272) MGI PMID:15057272 MGI:3042541 NCBI chr10:112,950,247...113,167,678
Ensembl chr10:112,950,247...113,167,678
JBrowse link
endodermal digestive tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FGFR2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO (MGI:5285062|PMID:21550054) MGI PMID:21550054 MGI:5285062 NCBI chr10:121,478,330...121,598,458
Ensembl chr10:121,478,332...121,598,458
JBrowse link
G ID2 inhibitor of DNA binding 2 involved_in
acts_upstream_of_or_within
ISS
ISO
(PMID:16888283) UniProt
UniProt
PMID:16888283 GO_REF:0000024 NCBI chr 2:8,682,056...8,684,461
Ensembl chr 2:8,678,845...8,684,461
JBrowse link
G PITX2 paired like homeodomain 2 acts_upstream_of_or_within ISO (MGI:5285062|PMID:21550054) MGI PMID:21550054 MGI:5285062 NCBI chr 4:110,617,423...110,642,123
Ensembl chr 4:110,617,423...110,642,123
JBrowse link
G SOX17 SRY-box transcription factor 17 involved_in ISS BHF-UCL GO_REF:0000024 NCBI chr 8:54,457,935...54,460,892
Ensembl chr 8:54,457,935...54,460,892
JBrowse link
enteric smooth muscle cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EDNRB endothelin receptor type B involved_in ISS BHF-UCL GO_REF:0000024 NCBI chr13:77,895,481...77,975,527
Ensembl chr13:77,895,481...77,975,529
JBrowse link
foregut morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NOTCH1 notch receptor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3603059|PMID:16107537) Ensembl
MGI
PMID:16107537 GO_REF:0000107 MGI:3603059 NCBI chr 9:136,494,433...136,546,048
Ensembl chr 9:136,494,433...136,546,048
JBrowse link
hindgut development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IFT172 intraflagellar transport 172 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5285455|PMID:21653639) Ensembl
MGI
PMID:21653639 GO_REF:0000107 MGI:5285455 NCBI chr 2:27,444,373...27,489,819
Ensembl chr 2:27,444,377...27,489,805
JBrowse link
hindgut morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GLI2 GLI family zinc finger 2 involved_in
acts_upstream_of_or_within
ISS
ISO
(MGI:2148409|PMID:11485934) UniProt
MGI
PMID:11485934 GO_REF:0000024 MGI:2148409 NCBI chr 2:120,735,868...120,992,653
Ensembl chr 2:120,735,623...120,992,653
JBrowse link
G GLI3 GLI family zinc finger 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2148409|PMID:11485934) Ensembl
MGI
PMID:11485934 GO_REF:0000107 MGI:2148409 NCBI chr 7:41,960,949...42,237,209
Ensembl chr 7:41,960,949...42,264,100
JBrowse link
G SHH sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2148409|PMID:11485934) Ensembl
MGI
PMID:11485934 GO_REF:0000107 MGI:2148409 NCBI chr 7:155,799,980...155,812,463
Ensembl chr 7:155,799,980...155,812,463
JBrowse link
G WNT5A Wnt family member 5A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3822053|PMID:18804104) Ensembl
MGI
PMID:18804104 GO_REF:0000107 MGI:3822053 NCBI chr 3:55,465,715...55,505,261
Ensembl chr 3:55,465,715...55,490,539
JBrowse link
intestinal epithelial cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C1GALT1 core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 acts_upstream_of_or_within ISO (MGI:5002772|PMID:21383503) MGI PMID:21383503 MGI:5002772 NCBI chr 7:7,182,544...7,248,616
Ensembl chr 7:7,156,934...7,248,616
JBrowse link
G CDH1 cadherin 1 acts_upstream_of_or_within ISO (MGI:5449145|PMID:22766025) MGI PMID:22766025 MGI:5449145 NCBI chr16:68,737,292...68,835,537
Ensembl chr16:68,737,292...68,835,537
JBrowse link
G DICER1 dicer 1, ribonuclease III acts_upstream_of_or_within ISO (MGI:4946569|PMID:21307095) MGI PMID:21307095 MGI:4946569 NCBI chr14:95,086,228...95,158,263
Ensembl chr14:95,086,228...95,158,010
JBrowse link
G GSDMC gasdermin C acts_upstream_of_or_within ISO (PMID:17350798) UniProt PMID:17350798 NCBI chr 8:129,705,903...129,786,624
Ensembl chr 8:129,748,196...129,786,624
JBrowse link
G IL6ST interleukin 6 cytokine family signal transducer involved_in IDA (PMID:25731159) UniProt PMID:25731159 NCBI chr 5:55,935,095...55,994,963
Ensembl chr 5:55,935,095...55,995,022
JBrowse link
G KLF5 Kruppel like factor 5 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5471906|PMID:23266329) Ensembl
MGI
PMID:23266329 GO_REF:0000107 MGI:5471906 NCBI chr13:73,054,976...73,077,538
Ensembl chr13:73,054,976...73,077,541
JBrowse link
G MIR203B microRNA 203b acts_upstream_of_or_within ISO (MGI:4946569|PMID:21307095) MGI PMID:21307095 MGI:4946569 NCBI chr14:104,117,418...104,117,503
Ensembl chr14:104,117,418...104,117,503
JBrowse link
G MIR7-1 microRNA 7-1 acts_upstream_of_or_within ISO (MGI:4946569|PMID:21307095) MGI PMID:21307095 MGI:4946569 NCBI chr 9:83,969,748...83,969,857
Ensembl chr 9:83,969,748...83,969,857
JBrowse link
G NKX3-2 NK3 homeobox 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4946569|PMID:21307095) Ensembl
MGI
PMID:21307095 GO_REF:0000107 MGI:4946569 NCBI chr 4:13,540,830...13,544,508
Ensembl chr 4:13,540,830...13,544,508
JBrowse link
G PRDM1 PR/SET domain 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5014435|PMID:21670299) Ensembl
MGI
PMID:21670299 GO_REF:0000107 MGI:5014435 NCBI chr 6:106,046,729...106,109,938
Ensembl chr 6:105,993,463...106,109,939
JBrowse link
G SPDEF SAM pointed domain containing ETS transcription factor involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4410300|PMID:19549527) Ensembl
MGI
PMID:19549527 GO_REF:0000107 MGI:4410300 NCBI chr 6:34,537,800...34,556,329
Ensembl chr 6:34,537,802...34,556,333
JBrowse link
G SRC SRC proto-oncogene, non-receptor tyrosine kinase involved_in IDA (PMID:25731159) UniProt PMID:25731159 NCBI chr20:37,344,690...37,406,050
Ensembl chr20:37,344,685...37,406,050
JBrowse link
G TIGAR TP53 induced glycolysis regulatory phosphatase involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5498602|PMID:23726973) Ensembl
MGI
PMID:23726973 GO_REF:0000107 MGI:5498602 NCBI chr12:4,321,213...4,360,028
Ensembl chr12:4,307,763...4,360,028
JBrowse link
G YAP1 Yes1 associated transcriptional regulator involved_in IDA (PMID:25731159) UniProt PMID:25731159 NCBI chr11:102,109,957...102,233,424
Ensembl chr11:102,110,447...102,233,424
JBrowse link
G YIPF6 Yip1 domain family member 6 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5437477|PMID:22802641) Ensembl
MGI
PMID:22802641 GO_REF:0000107 MGI:5437477 NCBI chr  X:68,498,362...68,572,459
Ensembl chr  X:68,498,562...68,537,282
JBrowse link
intestinal epithelial cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CBFA2T2 CBFA2/RUNX1 partner transcriptional co-repressor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:33,490,070...33,650,031
Ensembl chr20:33,490,075...33,650,036
JBrowse link
G CDX2 caudal type homeobox 2 involved_in ISS UniProt GO_REF:0000024 NCBI chr13:27,960,918...27,969,337
Ensembl chr13:27,960,918...27,969,315
JBrowse link
G GATA4 GATA binding protein 4 acts_upstream_of_or_within IDA (PMID:9566909) MGI PMID:9566909 NCBI chr 8:11,676,935...11,760,002
Ensembl chr 8:11,676,959...11,760,002
JBrowse link
G GATA5 GATA binding protein 5 acts_upstream_of_or_within IDA (PMID:9566909) MGI PMID:9566909 NCBI chr20:62,463,497...62,475,995
Ensembl chr20:62,463,497...62,475,995
JBrowse link
G GATA6 GATA binding protein 6 acts_upstream_of_or_within IDA (PMID:9566909) MGI PMID:9566909 NCBI chr18:22,169,589...22,202,528
Ensembl chr18:22,169,589...22,202,528
JBrowse link
G NPY neuropeptide Y involved_in TAS (PMID:10488139) GO_Central PMID:10488139 NCBI chr 7:24,284,190...24,291,862
Ensembl chr 7:24,284,188...24,291,862
JBrowse link
G PTK6 protein tyrosine kinase 6 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:63,528,001...63,537,376
Ensembl chr20:63,528,001...63,537,376
JBrowse link
G PYY peptide YY involved_in TAS (PMID:10488139) GO_Central PMID:10488139 NCBI chr17:43,952,733...44,004,445
Ensembl chr17:43,952,738...44,004,469
JBrowse link
G SAV1 salvador family WW domain containing protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3785211|PMID:18369314) Ensembl
MGI
PMID:18369314 GO_REF:0000107 MGI:3785211 NCBI chr14:50,633,104...50,668,306
Ensembl chr14:50,632,058...50,668,306
JBrowse link
intestinal epithelial cell maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDKN1A cyclin dependent kinase inhibitor 1A involved_in IEA
ISO
Ensembl
RGD
PMID:20466941 GO_REF:0000107 RGD:8662316 NCBI chr 6:36,676,463...36,687,332
Ensembl chr 6:36,676,460...36,687,337
JBrowse link
G HIF1A hypoxia inducible factor 1 subunit alpha involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4830408|PMID:20808783) Ensembl
MGI
PMID:20808783 GO_REF:0000107 MGI:4830408 NCBI chr14:61,695,513...61,748,258
Ensembl chr14:61,695,513...61,748,259
JBrowse link
G HOXA5 homeobox A5 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1349338|PMID:10564089) Ensembl
MGI
PMID:10564089 GO_REF:0000107 MGI:1349338 NCBI chr 7:27,141,052...27,143,681
Ensembl chr 7:27,141,052...27,143,681
JBrowse link
G TYMS thymidylate synthetase involved_in IEA
ISO
Ensembl
RGD
PMID:1260861 GO_REF:0000107 RGD:2317427 NCBI chr18:657,653...673,578
Ensembl chr18:657,653...673,578
JBrowse link
midgut development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A1 aldehyde dehydrogenase 1 family member A1 ISO RGD PMID:15964596 RGD:1643113 NCBI chr 9:72,900,671...72,953,053
Ensembl chr 9:72,900,671...73,080,442
JBrowse link
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 involved_in IEA
ISO
Ensembl
RGD
PMID:15964596 GO_REF:0000107 RGD:1643113 NCBI chr15:57,953,429...58,065,711
Ensembl chr15:57,953,424...58,497,866
JBrowse link
G ARG2 arginase 2 ISO RGD PMID:10050048 RGD:4144052 NCBI chr14:67,619,920...67,651,708
Ensembl chr14:67,619,920...67,651,708
JBrowse link
G ASL argininosuccinate lyase ISO RGD PMID:9544996 RGD:4139911 NCBI chr 7:66,075,819...66,093,576
Ensembl chr 7:66,075,800...66,094,697
JBrowse link
G ASS1 argininosuccinate synthase 1 involved_in IEA
ISO
Ensembl
RGD
PMID:9544996 GO_REF:0000107 RGD:4139911 NCBI chr 9:130,444,707...130,501,274
Ensembl chr 9:130,444,961...130,501,274
JBrowse link
G CASP1 caspase 1 ISO RGD PMID:12396474 RGD:5130192 NCBI chr11:105,025,443...105,035,591
Ensembl chr11:105,025,443...105,035,250
JBrowse link
G CPS1 carbamoyl-phosphate synthase 1 involved_in IEA
ISO
Ensembl
RGD
PMID:9544996 GO_REF:0000107 RGD:4139911 NCBI chr 2:210,477,685...210,679,107
Ensembl chr 2:210,477,682...210,679,107
JBrowse link
G CTNNB1 catenin beta 1 ISO RGD PMID:17356920 RGD:2289844 NCBI chr 3:41,199,422...41,240,445
Ensembl chr 3:41,194,741...41,260,096
JBrowse link
G DAB1 DAB adaptor protein 1 involved_in IEA
ISO
Ensembl
RGD
PMID:19946030 GO_REF:0000107 RGD:2317766 NCBI chr 1:56,994,778...58,546,726
Ensembl chr 1:56,994,778...58,546,734
JBrowse link
G EGFR epidermal growth factor receptor involved_in IEA
ISO
Ensembl
RGD
PMID:7926492 GO_REF:0000107 RGD:10395256 NCBI chr 7:55,019,017...55,211,628
Ensembl chr 7:55,019,017...55,211,628
JBrowse link
G FOXF1 forkhead box F1 involved_in IMP (PMID:19500772) DFLAT PMID:19500772 NCBI chr16:86,510,527...86,515,422
Ensembl chr16:86,510,527...86,515,422
JBrowse link
G HMGCS2 3-hydroxy-3-methylglutaryl-CoA synthase 2 ISO RGD PMID:8620869 RGD:2326125 NCBI chr 1:119,747,996...119,768,932
Ensembl chr 1:119,748,002...119,768,905
JBrowse link
G OTC ornithine transcarbamylase involved_in IEA
ISO
Ensembl
RGD
PMID:9544996 GO_REF:0000107 RGD:4139911 NCBI chr  X:38,352,528...38,421,446
Ensembl chr  X:38,352,586...38,421,446
JBrowse link
G REG1A regenerating family member 1 alpha involved_in IEA
ISO
Ensembl
RGD
PMID:7720628 GO_REF:0000107 RGD:9850133 NCBI chr 2:79,120,488...79,123,409
Ensembl chr 2:79,120,362...79,123,409
JBrowse link
G REG3A regenerating family member 3 alpha ISO RGD PMID:7720628 RGD:9850133 NCBI chr 2:79,157,006...79,159,753
Ensembl chr 2:79,157,003...79,159,753
JBrowse link
G RELN reelin ISO RGD PMID:19946030 RGD:2317766 NCBI chr 7:103,471,789...103,989,658
Ensembl chr 7:103,471,381...103,989,658
JBrowse link
G RXRA retinoid X receptor alpha ISO RGD PMID:15964596 RGD:1643113 NCBI chr 9:134,326,455...134,440,585
Ensembl chr 9:134,317,098...134,440,585
JBrowse link
G SMO smoothened, frizzled class receptor involved_in ISS BHF-UCL GO_REF:0000024 NCBI chr 7:129,188,633...129,213,548
Ensembl chr 7:129,188,633...129,213,545
JBrowse link
G WNT5A Wnt family member 5A involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3833777|PMID:19100728) Ensembl
MGI
PMID:19100728 GO_REF:0000107 MGI:3833777 NCBI chr 3:55,465,715...55,505,261
Ensembl chr 3:55,465,715...55,490,539
JBrowse link
negative regulation of stomach neuroendocrine cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HES1 hes family bHLH transcription factor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3804618|PMID:18173746) Ensembl
MGI
PMID:18173746 GO_REF:0000107 MGI:3804618 NCBI chr 3:194,136,148...194,138,732
Ensembl chr 3:194,136,148...194,138,732
JBrowse link
negative regulation of Wnt signaling pathway involved in digestive tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SFRP5 secreted frizzled related protein 5 involved_in IMP (PMID:18981481) BHF-UCL PMID:18981481 NCBI chr10:97,766,751...97,771,999
Ensembl chr10:97,766,751...97,771,999
JBrowse link
pharynx development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CRKL CRK like proto-oncogene, adaptor protein involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:6102264|PMID:25565927) Ensembl
MGI
PMID:25565927 GO_REF:0000107 MGI:6102264 NCBI chr22:20,917,407...20,953,747
Ensembl chr22:20,917,407...20,953,747
JBrowse link
G FOXE1 forkhead box E1 involved_in IEP (PMID:15494458) UniProt PMID:15494458 NCBI chr 9:97,853,226...97,856,717
Ensembl chr 9:97,853,226...97,856,717
JBrowse link
G TBX2 T-box transcription factor 2 involved_in ISS BHF-UCL GO_REF:0000024 NCBI chr17:61,399,843...61,409,466
Ensembl chr17:61,399,843...61,409,466
JBrowse link
post-embryonic digestive tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NKX2-3 NK2 homeobox 3 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1888604|PMID:10926756) Ensembl
MGI
PMID:10926756 GO_REF:0000107 MGI:1888604 NCBI chr10:99,532,942...99,536,524
Ensembl chr10:99,532,942...99,536,524
JBrowse link
posterior midgut development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EDNRB endothelin receptor type B involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:77408|PMID:8582288) Ensembl
MGI
PMID:8582288 GO_REF:0000107 MGI:77408 NCBI chr13:77,895,481...77,975,527
Ensembl chr13:77,895,481...77,975,529
JBrowse link
G RET ret proto-oncogene involved_in TAS (PMID:8114939) PINC PMID:8114939 NCBI chr10:43,077,069...43,130,351
Ensembl chr10:43,077,064...43,130,351
JBrowse link
stomach development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EXT1 exostosin glycosyltransferase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:6160687|PMID:29700203) Ensembl
MGI
PMID:29700203 GO_REF:0000107 MGI:6160687 NCBI chr 8:117,794,490...118,111,826
Ensembl chr 8:117,794,490...118,111,826
JBrowse link
G KCNQ1 potassium voltage-gated channel subfamily Q member 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:2,445,008...2,849,110
Ensembl chr11:2,444,684...2,849,105
JBrowse link
stomach neuroendocrine cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASCL1 achaete-scute family bHLH transcription factor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3804618|PMID:18173746) Ensembl
MGI
PMID:18173746 GO_REF:0000107 MGI:3804618 NCBI chr12:102,957,674...102,960,513
Ensembl chr12:102,957,674...102,960,513
JBrowse link
visceral mesoderm-endoderm interaction involved in midgut development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FOXL1 forkhead box L1 involved_in
acts_upstream_of_or_within
ISS
ISO
(MGI:893314|PMID:9203584) UniProt
MGI
PMID:9203584 GO_REF:0000024 MGI:893314 NCBI chr16:86,578,549...86,583,478
Ensembl chr16:86,576,368...86,583,478
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 18532
    multicellular organismal process 8415
      multicellular organism development 5911
        tube development 1280
          digestive tract development 171
            determination of digestive tract left/right asymmetry + 7
            digestive tract mesoderm development 1
            digestive tract morphogenesis + 60
            ectodermal digestive tract development + 2
            embryonic digestive tract development + 38
            enteric smooth muscle cell differentiation 1
            hindgut development + 10
            intestinal epithelial cell differentiation + 28
            midgut development + 22
            pharynx development + 3
            stomach development + 5
Path 2
Term Annotations click to browse term
  biological_process 18532
    developmental process 7217
      anatomical structure development 6540
        multicellular organism development 5911
          system development 5588
            digestive system development 186
              digestive tract development 171
                determination of digestive tract left/right asymmetry + 7
                digestive tract mesoderm development 1
                digestive tract morphogenesis + 60
                ectodermal digestive tract development + 2
                embryonic digestive tract development + 38
                enteric smooth muscle cell differentiation 1
                hindgut development + 10
                intestinal epithelial cell differentiation + 28
                midgut development + 22
                pharynx development + 3
                stomach development + 5
paths to the root