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ONTOLOGY REPORT - ANNOTATIONS


Term:digestive tract development
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Accession:GO:0048565 term browser browse the term
Definition:The process whose specific outcome is the progression of the digestive tract over time, from its formation to the mature structure. The digestive tract is the anatomical structure through which food passes and is processed.
Synonyms:narrow_synonym: intestinal development;   intestine development
 broad_synonym: gut development


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digestive tract development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALX4 ALX homeobox 4 acts_upstream_of_or_within ISO (MGI:1095762|PMID:9268572) MGI PMID:9268572 MGI:1095762 NCBI chr18:44,922,042...44,967,557
Ensembl chr18:44,922,150...44,967,550
JBrowse link
G B9D2 B9 domain containing 2 ISO RGD PMID:12815632 RGD:2302031 NCBI chr 1:112,621,832...112,627,726
Ensembl chr 1:112,621,633...112,643,885
JBrowse link
G CCKBR cholecystokinin B receptor involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3606849|PMID:15476751) Ensembl
MGI
PMID:15476751 GO_REF:0000107 MGI:3606849 NCBI chr21:29,602,066...29,606,343
Ensembl chr21:29,604,150...29,605,725
JBrowse link
G CCNB1 cyclin B1 ISO perinatal small intestine RGD PMID:17692466 RGD:2316322 NCBI chr 2:54,256,957...54,264,749 JBrowse link
G CD36 CD36 molecule ISO RGD PMID:11595646 RGD:628450 NCBI chr18:20,299,808...20,375,856
Ensembl chr18:20,339,050...20,372,639
JBrowse link
G CHD8 chromodomain helicase DNA binding protein 8 acts_upstream_of_or_within
involved_in
ISO (MGI:5792969|PMID:27602517)
(PMID:24998929)
MGI
GO_Central
PMID:24998929 PMID:27602517 MGI:5792969 NCBI chr15:18,430,601...18,492,564
Ensembl chr15:18,431,019...18,491,920
JBrowse link
G CLDN18 claudin 18 acts_upstream_of_or_within ISO (MGI:5489769|PMID:22437732) MGI PMID:22437732 MGI:5489769 NCBI chr23:34,229,115...34,257,431
Ensembl chr23:34,228,992...34,255,650
JBrowse link
G CLMP CXADR like membrane protein involved_in ISO (PMID:22155368) UniProt PMID:22155368 NCBI chr 5:11,255,054...11,289,578
Ensembl chr 5:11,267,038...11,286,682
JBrowse link
G COBL cordon-bleu WH2 repeat protein acts_upstream_of_or_within ISO (PMID:7586755) BHF-UCL PMID:7586755 NCBI chr18:2,206,957...2,386,333
Ensembl chr18:2,208,260...2,459,206
JBrowse link
G COL3A1 collagen type III alpha 1 chain acts_upstream_of_or_within ISO (MGI:86656|PMID:9050868) MGI PMID:9050868 MGI:86656 NCBI chr36:30,488,250...30,526,367
Ensembl chr36:30,488,488...30,536,765
JBrowse link
G CYP1A1 cytochrome P450 family 1 subfamily A member 1 ISO RGD PMID:12162855 RGD:727721 NCBI chr30:37,793,277...37,799,535
Ensembl chr30:37,793,508...37,796,866
JBrowse link
G DCHS1 dachsous cadherin-related 1 acts_upstream_of_or_within ISO (MGI:4939936|PMID:21303848) MGI PMID:21303848 MGI:4939936 NCBI chr21:29,927,713...29,955,742
Ensembl chr21:29,928,176...29,948,713
JBrowse link
G DICER1 dicer 1, ribonuclease III acts_upstream_of_or_within ISO (MGI:4946569|PMID:21307095) MGI PMID:21307095 MGI:4946569 NCBI chr 8:63,970,245...64,029,438
Ensembl chr 8:63,972,027...64,019,879
JBrowse link
G FAT4 FAT atypical cadherin 4 acts_upstream_of_or_within ISO (MGI:4939936|PMID:21303848) MGI PMID:21303848 MGI:4939936 NCBI chr19:15,157,595...15,332,821
Ensembl chr19:15,158,922...15,332,045
JBrowse link
G FGF10 fibroblast growth factor 10 acts_upstream_of_or_within ISO (MGI:3052435|PMID:15234214) MGI PMID:15234214 MGI:3052435 NCBI chr 4:65,851,130...65,930,944
Ensembl chr 4:65,851,069...65,928,192
JBrowse link
G FGFR2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO (MGI:3052435|PMID:15234214) MGI PMID:15234214 MGI:3052435 NCBI chr28:31,303,882...31,411,015
Ensembl chr28:31,303,894...31,411,621
JBrowse link
G FOXF1 forkhead box F1 involved_in ISO (PMID:19500772) DFLAT PMID:19500772 NCBI chr 5:66,343,776...66,347,785
Ensembl chr 5:66,345,150...66,347,935
JBrowse link
G HRH2 histamine receptor H2 acts_upstream_of_or_within ISO (MGI:3606849|PMID:15476751)
(MGI:1860000|PMID:10862789)
MGI PMID:10862789 PMID:15476751 MGI:1860000 MGI:3606849 NCBI chr 4:37,333,843...37,407,146
Ensembl chr 4:37,275,852...37,386,072
JBrowse link
G KIT KIT proto-oncogene, receptor tyrosine kinase involved_in ISS UniProt GO_REF:0000024 NCBI chr13:47,108,442...47,190,935
Ensembl chr13:47,108,504...47,190,029
JBrowse link
G LGR4 leucine rich repeat containing G protein-coupled receptor 4 acts_upstream_of_or_within ISO (MGI:5581372|PMID:24680895) MGI PMID:24680895 MGI:5581372 NCBI chr21:47,952,019...47,995,530
Ensembl chr21:47,952,890...47,996,288
JBrowse link
G MIXL1 Mix paired-like homeobox acts_upstream_of_or_within ISO (MGI:2181739|PMID:12117810) MGI PMID:12117810 MGI:2181739 NCBI chr 7:38,651,481...38,652,560 JBrowse link
G MUC4 mucin 4, cell surface associated ISO RGD PMID:15389518 RGD:2303738 NCBI chr33:29,061,372...29,084,938
Ensembl chr33:29,063,096...29,111,802
JBrowse link
G MYOCD myocardin involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4941650|PMID:21357509) Ensembl
MGI
PMID:21357509 GO_REF:0000107 MGI:4941650 NCBI chr 5:36,674,476...36,774,435
Ensembl chr 5:36,674,300...36,769,327
JBrowse link
G NKX2-2 NK2 homeobox 2 acts_upstream_of_or_within ISO (MGI:3835247|PMID:18987169) MGI PMID:18987169 MGI:3835247 NCBI chr24:1,933,176...1,935,875
Ensembl chr24:1,925,013...1,935,874
JBrowse link
G NKX2-3 NK2 homeobox 3 acts_upstream_of_or_within ISO (MGI:1334782|PMID:10207146)
(MGI:1888604|PMID:10926756)
MGI PMID:10207146 PMID:10926756 MGI:1334782 MGI:1888604 NCBI chr28:12,466,319...12,469,467
Ensembl chr28:12,466,368...12,469,473
JBrowse link
G NKX2-6 NK2 homeobox 6 acts_upstream_of_or_within ISO (PMID:9545560) BHF-UCL PMID:9545560 NCBI chr25:33,781,294...33,787,460
Ensembl chr25:33,781,249...33,785,761
JBrowse link
G NR1H4 nuclear receptor subfamily 1 group H member 4 ISO RGD PMID:11984532 RGD:1625207 NCBI chr15:39,497,313...39,608,120
Ensembl chr15:39,536,290...39,608,116
JBrowse link
G NTS neurotensin ISO RGD PMID:8571204 RGD:9743850 NCBI chr15:27,361,002...27,372,232
Ensembl chr15:27,361,002...27,372,232
JBrowse link
G OXTR oxytocin receptor ISO RGD PMID:19003903 RGD:2303961 NCBI chr20:9,358,797...9,382,308
Ensembl chr20:9,358,916...9,378,343
JBrowse link
G PDGFA platelet derived growth factor subunit A involved_in
acts_upstream_of_or_within
ISO (MGI:1860627|PMID:10903171)
(MGI:5543868|PMID:23938297)
UniProt
MGI
PMID:10903171 PMID:23938297 MGI:1860627 MGI:5543868 NCBI chr 6:16,271,082...16,293,246
Ensembl chr 6:16,270,104...16,292,396
JBrowse link
G PDGFC platelet derived growth factor C acts_upstream_of_or_within ISO (MGI:5543868|PMID:23938297) MGI PMID:23938297 MGI:5543868 NCBI chr15:54,143,637...54,239,962
Ensembl chr15:54,145,381...54,345,830
JBrowse link
G PDX1 pancreatic and duodenal homeobox 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4355651|PMID:19619492) Ensembl
MGI
PMID:19619492 GO_REF:0000107 MGI:4355651 NCBI chr25:11,741,863...11,746,885
Ensembl chr25:11,741,863...11,746,885
JBrowse link
G PKD1 polycystin 1, transient receptor potential channel interacting involved_in ISO (PMID:11891195) UniProt PMID:11891195 NCBI chr 6:38,811,051...38,865,503
Ensembl chr 6:38,837,964...38,865,503
JBrowse link
G RB1 RB transcriptional corepressor 1 acts_upstream_of_or_within ISO (MGI:3703460|PMID:17257418) MGI PMID:17257418 MGI:3703460 NCBI chr22:3,061,621...3,204,625
Ensembl chr22:3,063,239...3,257,726
JBrowse link
G SLC4A2 solute carrier family 4 member 2 ISO RGD PMID:8770049 RGD:9999233 NCBI chr16:15,111,078...15,126,618
Ensembl chr16:15,111,116...15,126,617
JBrowse link
G SMO smoothened, frizzled class receptor acts_upstream_of_or_within ISO (MGI:4355651|PMID:19619492) MGI PMID:19619492 MGI:4355651 NCBI chr14:7,518,871...7,527,703
Ensembl chr14:7,518,856...7,528,033
JBrowse link
G TGFB2 transforming growth factor beta 2 ISO RGD PMID:12815632 RGD:2302031 NCBI chr38:13,430,832...13,511,655
Ensembl chr38:13,429,148...13,510,242
JBrowse link
G TGFB3 transforming growth factor beta 3 ISO RGD PMID:12815632 RGD:2302031 NCBI chr 8:48,920,874...48,946,037
Ensembl chr 8:48,923,423...48,945,816
JBrowse link
G TGFBR1 transforming growth factor beta receptor 1 ISO RGD PMID:12815632 RGD:2302031 NCBI chr11:56,191,383...56,223,042
Ensembl chr11:56,161,772...56,218,594
JBrowse link
G TGFBR2 transforming growth factor beta receptor 2 ISO RGD PMID:12815632 RGD:2302031 NCBI chr23:13,886,869...13,946,480
Ensembl chr23:13,889,000...13,977,636
JBrowse link
G THRA thyroid hormone receptor alpha ISO RGD PMID:17496154 RGD:2314319 NCBI chr 9:22,469,466...22,493,445
Ensembl chr 9:22,468,594...22,493,445
JBrowse link
G TK1 thymidine kinase 1 ISO RGD PMID:6701043 RGD:2317231 NCBI chr 9:2,959,450...2,970,908
Ensembl chr 9:2,959,488...2,971,064
JBrowse link
G ZC3H7B zinc finger CCCH-type containing 7B ISO RGD PMID:17916272 RGD:2312267 NCBI chr10:23,882,379...23,944,850
Ensembl chr10:23,884,981...23,920,131
JBrowse link
cloaca development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHI1 Abelson helper integration site 1 involved_in ISS UniProt GO_REF:0000024 NCBI chr 1:27,966,101...28,199,163
Ensembl chr 1:27,998,874...28,198,351
JBrowse link
cloacal septation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within
IEA
ISO
(PMID:17442697) Ensembl
UniProt
PMID:17442697 GO_REF:0000107 NCBI chr 8:29,997,563...30,254,307
Ensembl chr 8:29,997,569...30,004,557
JBrowse link
G TP63 tumor protein p63 acts_upstream_of_or_within ISO (MGI:2387879|PMID:12368184) MGI PMID:12368184 MGI:2387879 NCBI chr34:21,766,861...21,985,095
Ensembl chr34:21,766,496...21,983,046
JBrowse link
G WNT11 Wnt family member 11 involved_in IEA Ensembl GO_REF:0000107 NCBI chr21:22,442,496...22,463,040
Ensembl chr21:22,446,051...22,463,173
JBrowse link
determination of digestive tract left/right asymmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCDC103 coiled-coil domain containing 103 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:18,581,544...18,585,939
Ensembl chr 9:18,582,468...18,584,612
JBrowse link
G CCDC39 coiled-coil domain containing 39 involved_in ISO (PMID:22693285) BHF-UCL PMID:22693285 NCBI chr34:13,915,763...13,959,574
Ensembl chr34:13,905,434...13,959,340
JBrowse link
G CCDC40 coiled-coil domain containing 40 involved_in ISO (PMID:22693285) BHF-UCL PMID:22693285 NCBI chr 9:1,616,029...1,656,043
Ensembl chr 9:1,601,121...1,656,597
JBrowse link
G DNAAF1 dynein axonemal assembly factor 1 involved_in ISO (PMID:19944405) BHF-UCL PMID:19944405 NCBI chr 5:68,184,532...68,205,651
Ensembl chr 5:68,184,532...68,205,656
JBrowse link
G MEGF8 multiple EGF like domains 8 acts_upstream_of_or_within ISO (MGI:3839019|PMID:18043505) MGI PMID:18043505 MGI:3839019 NCBI chr 1:112,020,344...112,063,120
Ensembl chr 1:112,021,960...112,024,773
JBrowse link
G ZIC3 Zic family member 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:107,822,002...107,833,582
Ensembl chr  X:107,821,948...107,833,597
JBrowse link
determination of intestine left/right asymmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NPHP3 nephrocystin 3 involved_in ISO (PMID:20007846) BHF-UCL PMID:20007846 NCBI chr23:29,662,486...29,703,629
Ensembl chr23:29,645,641...29,703,805
JBrowse link
determination of stomach left/right asymmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NPHP3 nephrocystin 3 involved_in ISO (PMID:18371931) BHF-UCL PMID:18371931 NCBI chr23:29,662,486...29,703,629
Ensembl chr23:29,645,641...29,703,805
JBrowse link
digestive tract mesoderm development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SHH sonic hedgehog signaling molecule ISO RGD PMID:9368764 RGD:2306312 NCBI chr16:18,650,553...18,663,571
Ensembl chr16:18,484,809...18,662,903
JBrowse link
digestive tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGR2 anterior gradient 2, protein disulphide isomerase family member involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:31,303,784...31,316,752
Ensembl chr14:31,305,567...31,316,686
JBrowse link
G BCL2 BCL2 apoptosis regulator acts_upstream_of_or_within ISO (MGI:70264|PMID:7812968) MGI PMID:7812968 MGI:70264 NCBI chr 1:13,733,849...13,900,653
Ensembl chr 1:13,731,406...13,900,658
JBrowse link
G EGFR epidermal growth factor receptor acts_upstream_of_or_within ISO (MGI:74263|PMID:7618084) MGI PMID:7618084 MGI:74263 NCBI chr18:5,983,669...6,044,092
Ensembl chr18:5,982,770...6,042,631
JBrowse link
G EPHB3 EPH receptor B3 involved_in ISO (MGI:2388849|PMID:12408869) UniProt PMID:12408869 MGI:2388849 NCBI chr34:17,422,746...17,433,769
Ensembl chr34:17,422,842...17,462,954
JBrowse link
G FGFR3 fibroblast growth factor receptor 3 acts_upstream_of_or_within ISO (MGI:4352984|PMID:19407216) MGI PMID:19407216 MGI:4352984 NCBI chr 3:62,309,128...62,318,932
Ensembl chr 3:62,303,756...62,323,896
JBrowse link
G HIF1A hypoxia inducible factor 1 subunit alpha involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4830408|PMID:20808783) Ensembl
MGI
PMID:20808783 GO_REF:0000107 MGI:4830408 NCBI chr 8:36,614,045...36,656,692
Ensembl chr 8:36,614,045...36,656,692
JBrowse link
G IL18 interleukin 18 ISO RGD PMID:21088234 RGD:4889157 NCBI chr 5:20,972,742...20,995,327
Ensembl chr 5:20,972,871...20,995,348
JBrowse link
G LOC609557 cryptic protein acts_upstream_of_or_within ISO (MGI:1346729|PMID:10521397) MGI PMID:10521397 MGI:1346729 NCBI chr19:20,318,937...20,384,369 JBrowse link
G NODAL nodal growth differentiation factor acts_upstream_of_or_within ISO (MGI:2155575|PMID:11311163) MGI PMID:11311163 MGI:2155575 NCBI chr 4:21,366,828...21,374,623
Ensembl chr 4:21,367,583...21,375,151
JBrowse link
G PERCC1 proline and glutamate rich with coiled coil 1 involved_in ISO (MGI:6368375|PMID:31217582) UniProt PMID:31217582 MGI:6368375
G SFRP1 secreted frizzled related protein 1 acts_upstream_of_or_within ISO (MGI:3839161|PMID:19300477) MGI PMID:19300477 MGI:3839161 NCBI chr16:24,262,451...24,306,162
Ensembl chr16:24,261,946...24,302,964
JBrowse link
G SFRP2 secreted frizzled related protein 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3839161|PMID:19300477) Ensembl
MGI
PMID:19300477 GO_REF:0000107 MGI:3839161 NCBI chr15:51,541,197...51,548,765
Ensembl chr15:51,540,500...51,548,765
JBrowse link
G SFRP5 secreted frizzled related protein 5 acts_upstream_of_or_within ISO (MGI:3839161|PMID:19300477) MGI PMID:19300477 MGI:3839161 NCBI chr28:10,994,180...10,999,552
Ensembl chr28:10,993,930...10,999,564
JBrowse link
G SHH sonic hedgehog signaling molecule acts_upstream_of_or_within ISO (MGI:1277744|PMID:9731532) MGI PMID:9731532 MGI:1277744 NCBI chr16:18,650,553...18,663,571
Ensembl chr16:18,484,809...18,662,903
JBrowse link
G SOX10 SRY-box transcription factor 10 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3699432|PMID:15843399), (MGI:56157|PMID:6512238) Ensembl
MGI
PMID:6512238 PMID:15843399 GO_REF:0000107 MGI:3699432 MGI:56157 NCBI chr10:26,680,441...26,690,530
Ensembl chr10:26,681,122...26,689,882
JBrowse link
G STRA6 signaling receptor and transporter of retinol STRA6 involved_in ISO (PMID:17273977) DFLAT PMID:17273977 NCBI chr30:37,331,834...37,359,449
Ensembl chr30:37,331,832...37,353,529
JBrowse link
G STX2 syntaxin 2 ISO RGD PMID:12464668 RGD:1298909 NCBI chr26:1,459,110...1,494,801
Ensembl chr26:1,454,189...1,494,823
JBrowse link
G TP73 tumor protein p73 acts_upstream_of_or_within ISO (MGI:1354064|PMID:10716451) MGI PMID:10716451 MGI:1354064 NCBI chr 5:58,194,385...58,241,159
Ensembl chr 5:58,187,826...58,240,839
JBrowse link
G VANGL2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO (MGI:3839161|PMID:19300477) MGI PMID:19300477 MGI:3839161 NCBI chr38:21,822,873...21,824,537 JBrowse link
G WNT5A Wnt family member 5A acts_upstream_of_or_within ISO (MGI:3839161|PMID:19300477) MGI PMID:19300477 MGI:3839161 NCBI chr20:34,756,430...34,790,937
Ensembl chr20:34,769,930...34,786,673
JBrowse link
embryonic digestive tract development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADA adenosine deaminase acts_upstream_of_or_within ISO (MGI:74163|PMID:7670465) MGI PMID:7670465 MGI:74163 NCBI chr24:32,083,786...32,119,810
Ensembl chr24:32,083,931...32,111,160
JBrowse link
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 acts_upstream_of_or_within ISO (MGI:3663954|PMID:16806149) MGI PMID:16806149 MGI:3663954 NCBI chr30:23,074,432...23,170,374
Ensembl chr30:23,074,432...23,340,030
JBrowse link
G CXCL8 C-X-C motif chemokine ligand 8 involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:62,435,035...62,438,354
Ensembl chr13:62,434,422...62,438,354
JBrowse link
G FGF10 fibroblast growth factor 10 acts_upstream_of_or_within ISO (MGI:3611702|PMID:16308329) MGI PMID:16308329 MGI:3611702 NCBI chr 4:65,851,130...65,930,944
Ensembl chr 4:65,851,069...65,928,192
JBrowse link
G FGF9 fibroblast growth factor 9 acts_upstream_of_or_within ISO (MGI:3611702|PMID:16308329) MGI PMID:16308329 MGI:3611702 NCBI chr25:16,630,321...16,665,935
Ensembl chr25:16,632,812...16,663,550
JBrowse link
G FOXF1 forkhead box F1 acts_upstream_of_or_within ISO (MGI:3617131|PMID:16439479) MGI PMID:16439479 MGI:3617131 NCBI chr 5:66,343,776...66,347,785
Ensembl chr 5:66,345,150...66,347,935
JBrowse link
G FOXF2 forkhead box F2 acts_upstream_of_or_within ISO (MGI:3617131|PMID:16439479) MGI PMID:16439479 MGI:3617131 NCBI chr35:1,841,165...1,846,649
Ensembl chr35:1,841,123...1,846,663
JBrowse link
G GLI2 GLI family zinc finger 2 acts_upstream_of_or_within ISO (MGI:1353327|PMID:10693670) MGI PMID:10693670 MGI:1353327 NCBI chr19:29,128,401...29,383,324
Ensembl chr19:29,130,227...29,383,658
JBrowse link
G GLI3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (MGI:1353327|PMID:10693670) MGI PMID:10693670 MGI:1353327 NCBI chr18:7,800,817...8,071,531
Ensembl chr18:7,801,394...8,068,132
JBrowse link
G MYB MYB proto-oncogene, transcription factor acts_upstream_of_or_within ISO (MGI:1346939|PMID:10523863) MGI PMID:10523863 MGI:1346939 NCBI chr 1:27,908,309...27,991,984
Ensembl chr 1:27,908,364...27,991,969
JBrowse link
G PCSK5 proprotein convertase subtilisin/kexin type 5 involved_in ISO (MGI:3795695|PMID:18519639)
(PMID:18519639)
BHF-UCL PMID:18519639 MGI:3795695 NCBI chr 1:82,088,090...82,506,131
Ensembl chr 1:82,090,664...82,555,145
JBrowse link
G PKDCC protein kinase domain containing, cytoplasmic involved_in ISO (MGI:3813934|PMID:19097194) UniProt PMID:19097194 MGI:3813934 NCBI chr17:33,659,352...33,669,237
Ensembl chr17:33,659,272...33,668,892
JBrowse link
G RARB retinoic acid receptor beta involved_in IEA Ensembl GO_REF:0000107 NCBI chr23:18,207,253...18,931,128
Ensembl chr23:18,207,760...18,482,652
JBrowse link
G RARRES2 retinoic acid receptor responder 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:14,671,345...14,675,000
Ensembl chr16:14,671,130...14,674,926
JBrowse link
G SALL1 spalt like transcription factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 2:64,242,742...64,260,021
Ensembl chr 2:64,243,987...64,259,521
JBrowse link
G SCT secretin ISO RGD PMID:1711228 RGD:729899
G STRA6 signaling receptor and transporter of retinol STRA6 involved_in ISO (PMID:17273977) DFLAT PMID:17273977 NCBI chr30:37,331,834...37,359,449
Ensembl chr30:37,331,832...37,353,529
JBrowse link
G TGFB2 transforming growth factor beta 2 involved_in ISS AgBase GO_REF:0000024 NCBI chr38:13,430,832...13,511,655
Ensembl chr38:13,429,148...13,510,242
JBrowse link
G TNF tumor necrosis factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr12:1,074,561...1,076,425
Ensembl chr12:1,074,552...1,076,425
JBrowse link
embryonic digestive tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FGF10 fibroblast growth factor 10 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3040447|PMID:15017552)
(MGI:3722952|PMID:16618415)
Ensembl
MGI
PMID:15017552 PMID:16618415 GO_REF:0000107 MGI:3040447 MGI:3722952 NCBI chr 4:65,851,130...65,930,944
Ensembl chr 4:65,851,069...65,928,192
JBrowse link
G FGFR2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO (MGI:3722952|PMID:16618415), (MGI:5317412|PMID:21492869)
(MGI:5285062|PMID:21550054)
MGI PMID:16618415 PMID:21492869 PMID:21550054 MGI:3722952 MGI:5285062 MGI:5317412 NCBI chr28:31,303,882...31,411,015
Ensembl chr28:31,303,894...31,411,621
JBrowse link
G FOXF1 forkhead box F1 involved_in ISO (PMID:19500772) DFLAT PMID:19500772 NCBI chr 5:66,343,776...66,347,785
Ensembl chr 5:66,345,150...66,347,935
JBrowse link
G GATA4 GATA binding protein 4 acts_upstream_of_or_within ISO (MGI:3590399|PMID:16127717) MGI PMID:16127717 MGI:3590399 NCBI chr25:26,126,172...26,211,474
Ensembl chr25:26,127,853...26,182,989
JBrowse link
G GLI3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (MGI:3608164|PMID:16247775) MGI PMID:16247775 MGI:3608164 NCBI chr18:7,800,817...8,071,531
Ensembl chr18:7,801,394...8,068,132
JBrowse link
G HLX H2.0 like homeobox acts_upstream_of_or_within ISO (MGI:79044|PMID:8557196) MGI PMID:8557196 MGI:79044 NCBI chr38:15,538,744...15,543,686
Ensembl chr38:15,539,029...15,542,152
JBrowse link
G HNF1B HNF1 homeobox B involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3807614|PMID:18635606) Ensembl
MGI
PMID:18635606 GO_REF:0000107 MGI:3807614 NCBI chr 9:37,437,992...37,493,200
Ensembl chr 9:37,438,583...37,492,993
JBrowse link
G IHH Indian hedgehog signaling molecule acts_upstream_of_or_within ISO (MGI:1858523|PMID:10821773) MGI PMID:10821773 MGI:1858523 NCBI chr37:25,616,942...25,622,989 JBrowse link
G LOC102151783 inhibitor of DNA binding 2 involved_in ISO (MGI:4399020|PMID:16888283) UniProt PMID:16888283 MGI:4399020 NCBI chr10:54,954,852...54,957,116 JBrowse link
G NIPBL NIPBL cohesin loading factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:71,583,118...71,780,986
Ensembl chr 4:71,583,732...71,780,852
JBrowse link
G OVOL2 ovo like zinc finger 2 acts_upstream_of_or_within ISO (MGI:3618450|PMID:16423343) MGI PMID:16423343 MGI:3618450 NCBI chr24:5,020,608...5,050,487
Ensembl chr24:5,020,813...5,050,309
JBrowse link
G PDGFRA platelet derived growth factor receptor alpha involved_in IEA Ensembl GO_REF:0000107 NCBI chr13:46,729,722...46,775,828
Ensembl chr13:46,730,703...46,773,278
JBrowse link
G PITX2 paired like homeodomain 2 acts_upstream_of_or_within ISO (MGI:5285062|PMID:21550054) MGI PMID:21550054 MGI:5285062 NCBI chr32:30,710,161...30,730,162
Ensembl chr32:30,710,685...30,730,273
JBrowse link
G SHH sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1858523|PMID:10821773) Ensembl
MGI
PMID:10821773 GO_REF:0000107 MGI:1858523 NCBI chr16:18,650,553...18,663,571
Ensembl chr16:18,484,809...18,662,903
JBrowse link
G SHOX2 short stature homeobox 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3604918|PMID:16141225) Ensembl
MGI
PMID:16141225 GO_REF:0000107 MGI:3604918 NCBI chr23:51,484,696...51,492,586
Ensembl chr23:51,484,421...51,492,566
JBrowse link
G SIX2 SIX homeobox 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:47,399,152...47,403,503
Ensembl chr10:47,400,034...47,403,509
JBrowse link
G SOX11 SRY-box transcription factor 11 involved_in ISO (MGI:3052265|PMID:15254231) UniProt PMID:15254231 MGI:3052265
G TCF21 transcription factor 21 ISO RGD PMID:11804032 RGD:727206 NCBI chr 1:26,856,281...26,859,654
Ensembl chr 1:26,856,587...26,859,647
JBrowse link
G TCF7 transcription factor 7 acts_upstream_of_or_within ISO (MGI:3042541|PMID:15057272) MGI PMID:15057272 MGI:3042541 NCBI chr11:22,313,113...22,346,221
Ensembl chr11:22,313,105...22,344,004
JBrowse link
G TCF7L2 transcription factor 7 like 2 acts_upstream_of_or_within ISO (MGI:3042541|PMID:15057272) MGI PMID:15057272 MGI:3042541 NCBI chr28:23,966,079...24,162,775
Ensembl chr28:23,966,073...24,163,737
JBrowse link
embryonic ectodermal digestive tract development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G VPS52 VPS52 subunit of GARP complex acts_upstream_of_or_within ISO (MGI:5449815|PMID:23142660) MGI PMID:23142660 MGI:5449815 NCBI chr12:2,697,508...2,712,831
Ensembl chr12:2,697,508...2,712,831
JBrowse link
embryonic ectodermal digestive tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FOXF1 forkhead box F1 involved_in ISO (PMID:19500772) DFLAT PMID:19500772 NCBI chr 5:66,343,776...66,347,785
Ensembl chr 5:66,345,150...66,347,935
JBrowse link
embryonic foregut morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACVR2B activin A receptor type 2B acts_upstream_of_or_within ISO (MGI:1861876|PMID:10921901) MGI PMID:10921901 MGI:1861876 NCBI chr23:8,211,555...8,225,596
Ensembl chr23:8,192,483...8,218,894
JBrowse link
G CTNNB1 catenin beta 1 acts_upstream_of_or_within ISO (MGI:3820452|PMID:18692041) MGI PMID:18692041 MGI:3820452 NCBI chr23:10,559,722...10,572,933
Ensembl chr23:10,559,718...10,572,927
JBrowse link
G EPB41L5 erythrocyte membrane protein band 4.1 like 5 acts_upstream_of_or_within ISO (MGI:3821807|PMID:18794329) MGI PMID:18794329 MGI:3821807 NCBI chr19:29,916,994...30,063,243
Ensembl chr19:29,921,636...30,063,216
JBrowse link
G FOXF1 forkhead box F1 acts_upstream_of_or_within ISO (MGI:2135612|PMID:11493558) MGI PMID:11493558 MGI:2135612 NCBI chr 5:66,343,776...66,347,785
Ensembl chr 5:66,345,150...66,347,935
JBrowse link
G FOXP4 forkhead box P4 acts_upstream_of_or_within ISO (MGI:3054576|PMID:15361625) MGI PMID:15361625 MGI:3054576 NCBI chr12:10,239,402...10,292,892
Ensembl chr12:10,258,166...10,291,125
JBrowse link
G GATA4 GATA binding protein 4 acts_upstream_of_or_within ISO (MGI:87488|PMID:9136932)
(MGI:87489|PMID:9136933)
MGI PMID:9136932 PMID:9136933 MGI:87488 MGI:87489 NCBI chr25:26,126,172...26,211,474
Ensembl chr25:26,127,853...26,182,989
JBrowse link
G NCKAP1 NCK associated protein 1 acts_upstream_of_or_within ISO (MGI:3701029|PMID:16831833) MGI PMID:16831833 MGI:3701029 NCBI chr36:25,965,243...26,054,775
Ensembl chr36:25,965,938...26,054,760
JBrowse link
G SHH sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:1277744|PMID:9731532) Ensembl
MGI
PMID:9731532 GO_REF:0000107 MGI:1277744 NCBI chr16:18,650,553...18,663,571
Ensembl chr16:18,484,809...18,662,903
JBrowse link
G SMAD2 SMAD family member 2 acts_upstream_of_or_within ISO (MGI:3618021|PMID:15183723) MGI PMID:15183723 MGI:3618021 NCBI chr 7:43,696,883...43,778,063
Ensembl chr 7:43,700,445...43,769,983
JBrowse link
G SMAD3 SMAD family member 3 acts_upstream_of_or_within ISO (MGI:3618021|PMID:15183723) MGI PMID:15183723 MGI:3618021 NCBI chr30:31,246,313...31,360,098
Ensembl chr30:31,245,657...31,363,337
JBrowse link
G SOX17 SRY-box transcription factor 17 acts_upstream_of_or_within
involved_in
ISO (MGI:4415813|PMID:18462699)
(MGI:4946573|PMID:21305474)
(MGI:4355651|PMID:19619492)
MGI
BHF-UCL
PMID:18462699 PMID:19619492 PMID:21305474 MGI:4355651 MGI:4415813 MGI:4946573 NCBI chr29:5,979,092...5,981,504
Ensembl chr29:5,979,261...5,981,124
JBrowse link
embryonic hindgut morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DACT1 dishevelled binding antagonist of beta catenin 1 involved_in ISO (MGI:4457465|PMID:20145239) UniProt PMID:20145239 MGI:4457465 NCBI chr 8:33,950,016...33,959,671
Ensembl chr 8:33,949,926...33,958,449
JBrowse link
G HOXA13 homeobox A13 ISO RGD PMID:17161201 RGD:1599527 NCBI chr14:40,371,234...40,375,261
Ensembl chr14:40,373,059...40,375,980
JBrowse link
G HOXD13 homeobox D13 ISO RGD PMID:17161201 RGD:1599527 NCBI chr36:19,901,184...19,903,837 JBrowse link
G TCF7 transcription factor 7 acts_upstream_of_or_within ISO (MGI:3042541|PMID:15057272) MGI PMID:15057272 MGI:3042541 NCBI chr11:22,313,113...22,346,221
Ensembl chr11:22,313,105...22,344,004
JBrowse link
G TCF7L2 transcription factor 7 like 2 acts_upstream_of_or_within ISO (MGI:3042541|PMID:15057272) MGI PMID:15057272 MGI:3042541 NCBI chr28:23,966,079...24,162,775
Ensembl chr28:23,966,073...24,163,737
JBrowse link
endodermal digestive tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FGFR2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO (MGI:5285062|PMID:21550054) MGI PMID:21550054 MGI:5285062 NCBI chr28:31,303,882...31,411,015
Ensembl chr28:31,303,894...31,411,621
JBrowse link
G LOC102151783 inhibitor of DNA binding 2 acts_upstream_of_or_within ISO (PMID:16888283) UniProt PMID:16888283 NCBI chr10:54,954,852...54,957,116 JBrowse link
G PITX2 paired like homeodomain 2 acts_upstream_of_or_within ISO (MGI:5285062|PMID:21550054) MGI PMID:21550054 MGI:5285062 NCBI chr32:30,710,161...30,730,162
Ensembl chr32:30,710,685...30,730,273
JBrowse link
G SOX17 SRY-box transcription factor 17 involved_in ISO (MGI:4946573|PMID:21305474) BHF-UCL PMID:21305474 MGI:4946573 NCBI chr29:5,979,092...5,981,504
Ensembl chr29:5,979,261...5,981,124
JBrowse link
enteric smooth muscle cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EDNRB endothelin receptor type B involved_in ISO (MGI:1330409|PMID:10021336) BHF-UCL PMID:10021336 MGI:1330409 NCBI chr22:31,415,324...31,438,772
Ensembl chr22:31,417,308...31,437,587
JBrowse link
foregut morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NOTCH1 notch receptor 1 acts_upstream_of_or_within ISO (MGI:3603059|PMID:16107537) MGI PMID:16107537 MGI:3603059 NCBI chr 9:48,975,972...49,018,985
Ensembl chr 9:48,974,757...49,017,277
JBrowse link
hindgut development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IFT172 intraflagellar transport 172 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5285455|PMID:21653639) Ensembl
MGI
PMID:21653639 GO_REF:0000107 MGI:5285455 NCBI chr17:21,389,462...21,426,970
Ensembl chr17:21,389,482...21,426,796
JBrowse link
hindgut morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GLI2 GLI family zinc finger 2 acts_upstream_of_or_within ISO (MGI:2148409|PMID:11485934) MGI PMID:11485934 MGI:2148409 NCBI chr19:29,128,401...29,383,324
Ensembl chr19:29,130,227...29,383,658
JBrowse link
G GLI3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (MGI:2148409|PMID:11485934) MGI PMID:11485934 MGI:2148409 NCBI chr18:7,800,817...8,071,531
Ensembl chr18:7,801,394...8,068,132
JBrowse link
G SHH sonic hedgehog signaling molecule involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:2148409|PMID:11485934) Ensembl
MGI
PMID:11485934 GO_REF:0000107 MGI:2148409 NCBI chr16:18,650,553...18,663,571
Ensembl chr16:18,484,809...18,662,903
JBrowse link
G WNT5A Wnt family member 5A acts_upstream_of_or_within ISO (MGI:3822053|PMID:18804104) MGI PMID:18804104 MGI:3822053 NCBI chr20:34,756,430...34,790,937
Ensembl chr20:34,769,930...34,786,673
JBrowse link
intestinal epithelial cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C1GALT1 core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 acts_upstream_of_or_within ISO (MGI:5002772|PMID:21383503) MGI PMID:21383503 MGI:5002772 NCBI chr14:22,863,861...22,902,232
Ensembl chr14:22,885,720...22,944,206
JBrowse link
G CDH1 cadherin 1 acts_upstream_of_or_within ISO (MGI:5449145|PMID:22766025) MGI PMID:22766025 MGI:5449145 NCBI chr 5:80,757,508...80,834,878
Ensembl chr 5:80,757,508...80,834,878
JBrowse link
G DICER1 dicer 1, ribonuclease III acts_upstream_of_or_within ISO (MGI:4946569|PMID:21307095) MGI PMID:21307095 MGI:4946569 NCBI chr 8:63,970,245...64,029,438
Ensembl chr 8:63,972,027...64,019,879
JBrowse link
G GSDMC gasdermin C acts_upstream_of_or_within ISO (PMID:17350798) UniProt PMID:17350798 NCBI chr13:26,906,167...26,919,599
Ensembl chr13:26,907,120...26,919,353
JBrowse link
G IL6ST interleukin 6 cytokine family signal transducer involved_in ISO (MGI:5629863|PMID:25731159)
(PMID:25731159)
UniProt PMID:25731159 MGI:5629863 NCBI chr 2:43,214,050...43,273,014
Ensembl chr 2:43,214,050...43,248,124
JBrowse link
G KLF5 Kruppel like factor 5 acts_upstream_of_or_within ISO (MGI:5471906|PMID:23266329) MGI PMID:23266329 MGI:5471906 NCBI chr22:27,163,179...27,185,241
Ensembl chr22:27,162,397...27,200,871
JBrowse link
G MIR203 microRNA mir-203 acts_upstream_of_or_within ISO (MGI:4946569|PMID:21307095) MGI PMID:21307095 MGI:4946569 NCBI chr 8:71,774,247...71,774,340
Ensembl chr 8:71,774,247...71,774,340
JBrowse link
G MIR7-1 microRNA mir-7-1 acts_upstream_of_or_within ISO (MGI:4946569|PMID:21307095) MGI PMID:21307095 MGI:4946569 NCBI chr 1:75,509,765...75,509,828
Ensembl chr 1:75,509,743...75,509,851
JBrowse link
G NKX3-2 NK3 homeobox 2 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4946569|PMID:21307095) Ensembl
MGI
PMID:21307095 GO_REF:0000107 MGI:4946569 NCBI chr 3:66,543,046...66,546,779
Ensembl chr 3:66,543,046...66,545,580
JBrowse link
G PRDM1 PR/SET domain 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:5014435|PMID:21670299) Ensembl
MGI
PMID:21670299 GO_REF:0000107 MGI:5014435 NCBI chr12:63,454,242...63,495,278
Ensembl chr12:63,470,974...63,495,579
JBrowse link
G SPDEF SAM pointed domain containing ETS transcription factor involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4410300|PMID:19549527) Ensembl
MGI
PMID:19549527 GO_REF:0000107 MGI:4410300 NCBI chr12:3,814,806...3,831,724
Ensembl chr12:3,815,300...3,831,477
JBrowse link
G SRC SRC proto-oncogene, non-receptor tyrosine kinase involved_in ISO (PMID:25731159)
(MGI:5629863|PMID:25731159)
UniProt PMID:25731159 MGI:5629863 NCBI chr24:25,982,499...26,019,748
Ensembl chr24:25,999,048...26,018,077
JBrowse link
G TIGAR TP53 induced glycolysis regulatory phosphatase acts_upstream_of_or_within ISO (MGI:5498602|PMID:23726973) MGI PMID:23726973 MGI:5498602 NCBI chr27:40,521,751...40,549,304
Ensembl chr27:40,523,314...40,549,332
JBrowse link
G YAP1 Yes1 associated transcriptional regulator involved_in ISO (MGI:5629863|PMID:25731159)
(PMID:25731159)
UniProt PMID:25731159 MGI:5629863 NCBI chr 5:29,394,760...29,495,977
Ensembl chr 5:29,394,541...29,496,251
JBrowse link
G YIPF6 Yip1 domain family member 6 acts_upstream_of_or_within ISO (MGI:5437477|PMID:22802641) MGI PMID:22802641 MGI:5437477 NCBI chr  X:53,026,414...53,049,619
Ensembl chr  X:53,026,609...53,045,376
JBrowse link
intestinal epithelial cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CBFA2T2 CBFA2/RUNX1 partner transcriptional co-repressor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr24:22,722,902...22,871,098
Ensembl chr24:22,723,018...22,866,484
JBrowse link
G CDX2 caudal type homeobox 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr25:11,701,134...11,707,883
Ensembl chr25:11,700,779...11,707,127
JBrowse link
G GATA4 GATA binding protein 4 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:9566909) MGI
Ensembl
PMID:9566909 GO_REF:0000107 NCBI chr25:26,126,172...26,211,474
Ensembl chr25:26,127,853...26,182,989
JBrowse link
G GATA5 GATA binding protein 5 acts_upstream_of_or_within
involved_in
ISO
IEA
(PMID:9566909) MGI
Ensembl
PMID:9566909 GO_REF:0000107 NCBI chr24:46,417,404...46,427,617
Ensembl chr24:46,417,391...46,429,858
JBrowse link
G GATA6 GATA binding protein 6 acts_upstream_of_or_within ISO (PMID:9566909) MGI PMID:9566909 NCBI chr 7:65,932,114...65,962,574 JBrowse link
G LOC102156300 collagen alpha-4(IV) chain involved_in ISO (MGI:3640030|PMID:16782882) UniProt PMID:16782882 MGI:3640030 NCBI chr24:47,124,847...47,132,516 JBrowse link
G SAV1 salvador family WW domain containing protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3785211|PMID:18369314) Ensembl
MGI
PMID:18369314 GO_REF:0000107 MGI:3785211 NCBI chr 8:27,034,606...27,061,926
Ensembl chr 8:27,022,628...27,062,611
JBrowse link
intestinal epithelial cell maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDKN1A cyclin dependent kinase inhibitor 1A ISO RGD PMID:20466941 RGD:8662316 NCBI chr12:5,746,898...5,755,103
Ensembl chr12:5,745,852...5,892,281
JBrowse link
G HIF1A hypoxia inducible factor 1 subunit alpha involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:4830408|PMID:20808783) Ensembl
MGI
PMID:20808783 GO_REF:0000107 MGI:4830408 NCBI chr 8:36,614,045...36,656,692
Ensembl chr 8:36,614,045...36,656,692
JBrowse link
G HOXA5 homeobox A5 acts_upstream_of_or_within ISO (MGI:1349338|PMID:10564089) MGI PMID:10564089 MGI:1349338 NCBI chr14:40,315,409...40,319,001
Ensembl chr14:40,315,639...40,317,768
JBrowse link
G TYMS thymidylate synthetase ISO RGD PMID:1260861 RGD:2317427 NCBI chr 7:67,487,927...67,497,747
Ensembl chr 7:67,487,927...67,497,747
JBrowse link
midgut development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A1 aldehyde dehydrogenase 1 family member A1 ISO RGD PMID:15964596 RGD:1643113 NCBI chr 1:84,940,411...84,994,789
Ensembl chr 1:84,940,411...84,994,789
JBrowse link
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 ISO RGD PMID:15964596 RGD:1643113 NCBI chr30:23,074,432...23,170,374
Ensembl chr30:23,074,432...23,340,030
JBrowse link
G ARG2 arginase 2 ISO RGD PMID:10050048 RGD:4144052 NCBI chr 8:41,588,051...41,619,406
Ensembl chr 8:41,588,150...41,619,402
JBrowse link
G ASL argininosuccinate lyase ISO RGD PMID:9544996 RGD:4139911 NCBI chr 6:768,522...779,144
Ensembl chr 6:730,358...779,424
JBrowse link
G ASS1 argininosuccinate synthase 1 ISO RGD PMID:9544996 RGD:4139911 NCBI chr 9:53,425,228...53,478,007
Ensembl chr 9:53,425,448...53,477,904
JBrowse link
G CPS1 carbamoyl-phosphate synthase 1 ISO RGD PMID:9544996 RGD:4139911 NCBI chr37:18,308,164...18,428,487
Ensembl chr37:18,143,986...18,427,697
JBrowse link
G CTNNB1 catenin beta 1 ISO RGD PMID:17356920 RGD:2289844 NCBI chr23:10,559,722...10,572,933
Ensembl chr23:10,559,718...10,572,927
JBrowse link
G DAB1 DAB adaptor protein 1 ISO RGD PMID:19946030 RGD:2317766 NCBI chr 5:51,397,837...52,505,513
Ensembl chr 5:52,231,141...52,502,336
JBrowse link
G EGFR epidermal growth factor receptor ISO RGD PMID:7926492 RGD:10395256 NCBI chr18:5,983,669...6,044,092
Ensembl chr18:5,982,770...6,042,631
JBrowse link
G FOXF1 forkhead box F1 involved_in ISO (PMID:19500772) DFLAT PMID:19500772 NCBI chr 5:66,343,776...66,347,785
Ensembl chr 5:66,345,150...66,347,935
JBrowse link
G HMGCS2 3-hydroxy-3-methylglutaryl-CoA synthase 2 ISO RGD PMID:8620869 RGD:2326125 NCBI chr17:56,679,942...56,698,521
Ensembl chr17:56,680,301...56,698,419
JBrowse link
G OTC ornithine transcarbamylase ISO RGD PMID:9544996 RGD:4139911 NCBI chr  X:33,130,921...33,200,441
Ensembl chr  X:33,131,040...33,199,595
JBrowse link
G RELN reelin ISO RGD PMID:19946030 RGD:2317766 NCBI chr18:16,275,822...16,773,875
Ensembl chr18:16,275,837...16,773,875
JBrowse link
G RXRA retinoid X receptor alpha ISO RGD PMID:15964596 RGD:1643113 NCBI chr 9:50,525,195...50,575,720
Ensembl chr 9:50,484,567...50,573,119
JBrowse link
G SMO smoothened, frizzled class receptor involved_in ISO (MGI:5142377|PMID:11517919) BHF-UCL PMID:11517919 MGI:5142377 NCBI chr14:7,518,871...7,527,703
Ensembl chr14:7,518,856...7,528,033
JBrowse link
G WNT5A Wnt family member 5A acts_upstream_of_or_within ISO (MGI:3833777|PMID:19100728) MGI PMID:19100728 MGI:3833777 NCBI chr20:34,756,430...34,790,937
Ensembl chr20:34,769,930...34,786,673
JBrowse link
negative regulation of stomach neuroendocrine cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HES1 hes family bHLH transcription factor 1 acts_upstream_of_or_within ISO (MGI:3804618|PMID:18173746) MGI PMID:18173746 MGI:3804618
negative regulation of Wnt signaling pathway involved in digestive tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SFRP5 secreted frizzled related protein 5 involved_in ISO (PMID:18981481) BHF-UCL PMID:18981481 NCBI chr28:10,994,180...10,999,552
Ensembl chr28:10,993,930...10,999,564
JBrowse link
pharynx development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CRKL CRK like proto-oncogene, adaptor protein involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:6102264|PMID:25565927) Ensembl
MGI
PMID:25565927 GO_REF:0000107 MGI:6102264 NCBI chr26:30,542,276...30,582,479
Ensembl chr26:30,545,311...30,581,964
JBrowse link
G FOXE1 forkhead box E1 involved_in ISO (PMID:15494458) UniProt PMID:15494458 NCBI chr11:55,143,389...55,145,954 JBrowse link
G TBX2 T-box transcription factor 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:35,237,323...35,245,066
Ensembl chr 9:35,235,649...35,245,736
JBrowse link
post-embryonic digestive tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NKX2-3 NK2 homeobox 3 acts_upstream_of_or_within ISO (MGI:1888604|PMID:10926756) MGI PMID:10926756 MGI:1888604 NCBI chr28:12,466,319...12,469,467
Ensembl chr28:12,466,368...12,469,473
JBrowse link
posterior midgut development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EDNRB endothelin receptor type B acts_upstream_of_or_within ISO (MGI:77408|PMID:8582288) MGI PMID:8582288 MGI:77408 NCBI chr22:31,415,324...31,438,772
Ensembl chr22:31,417,308...31,437,587
JBrowse link
stomach development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EXT1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO (MGI:6160687|PMID:29700203) MGI PMID:29700203 MGI:6160687 NCBI chr13:17,172,497...17,457,084
Ensembl chr13:17,172,705...17,456,469
JBrowse link
G KCNQ1 potassium voltage-gated channel subfamily Q member 1 involved_in ISO (MGI:3512716|PMID:15385447) MGI PMID:15385447 MGI:3512716 NCBI chr18:46,554,390...46,830,533
Ensembl chr18:46,518,908...46,830,043
JBrowse link
stomach neuroendocrine cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASCL1 achaete-scute family bHLH transcription factor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
(MGI:3804618|PMID:18173746) Ensembl
MGI
PMID:18173746 GO_REF:0000107 MGI:3804618 NCBI chr15:41,694,021...41,696,933
Ensembl chr15:41,694,269...41,695,391
JBrowse link
visceral mesoderm-endoderm interaction involved in midgut development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FOXL1 forkhead box L1 acts_upstream_of_or_within ISO (MGI:893314|PMID:9203584) MGI PMID:9203584 MGI:893314 NCBI chr 5:66,281,543...66,287,357
Ensembl chr 5:66,283,528...66,284,598
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 13872
    multicellular organismal process 6832
      multicellular organism development 5207
        tube development 1179
          digestive tract development 160
            determination of digestive tract left/right asymmetry + 7
            digestive tract mesoderm development 1
            digestive tract morphogenesis + 57
            ectodermal digestive tract development + 2
            embryonic digestive tract development + 37
            enteric smooth muscle cell differentiation 1
            hindgut development + 10
            intestinal epithelial cell differentiation + 26
            midgut development + 18
            pharynx development + 3
            stomach development + 5
Path 2
Term Annotations click to browse term
  biological_process 13872
    developmental process 6138
      anatomical structure development 5709
        multicellular organism development 5207
          system development 4900
            digestive system development 175
              digestive tract development 160
                determination of digestive tract left/right asymmetry + 7
                digestive tract mesoderm development 1
                digestive tract morphogenesis + 57
                ectodermal digestive tract development + 2
                embryonic digestive tract development + 37
                enteric smooth muscle cell differentiation 1
                hindgut development + 10
                intestinal epithelial cell differentiation + 26
                midgut development + 18
                pharynx development + 3
                stomach development + 5
paths to the root