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ONTOLOGY REPORT - ANNOTATIONS


Term:digestive tract development
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Accession:GO:0048565 term browser browse the term
Definition:The process whose specific outcome is the progression of the digestive tract over time, from its formation to the mature structure. The digestive tract is the anatomical structure through which food passes and is processed.
Synonyms:narrow_synonym: intestinal development;   intestine development
 broad_synonym: gut development


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digestive tract development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alx4 ALX homeobox 4 acts_upstream_of_or_within ISO (MGI:1095762|PMID:9268572) MGI PMID:9268572 MGI:1095762 NCBI chrNW_004955422:3,278,615...3,290,799
Ensembl chrNW_004955422:3,278,615...3,291,714
JBrowse link
G Cckbr cholecystokinin B receptor acts_upstream_of_or_within ISO (MGI:3606849|PMID:15476751) MGI PMID:15476751 MGI:3606849 NCBI chrNW_004955414:22,001,351...22,011,275
Ensembl chrNW_004955414:22,000,436...22,011,433
JBrowse link
G Ccnb1 cyclin B1 ISO perinatal small intestine RGD PMID:17692466 RGD:2316322 NCBI chrNW_004955446:140,661...149,500
Ensembl chrNW_004955446:140,093...149,500
JBrowse link
G Cd36 CD36 molecule ISO RGD PMID:11595646 RGD:628450 NCBI chrNW_004955410:5,003,720...5,120,903
Ensembl chrNW_004955410:5,003,668...5,075,313
JBrowse link
G Chd8 chromodomain helicase DNA binding protein 8 involved_in
acts_upstream_of_or_within
ISO (PMID:24998929)
(MGI:5792969|PMID:27602517)
GO_Central
MGI
PMID:24998929 PMID:27602517 MGI:5792969 NCBI chrNW_004955550:2,115,649...2,175,687
Ensembl chrNW_004955550:2,115,649...2,175,181
JBrowse link
G Cldn18 claudin 18 acts_upstream_of_or_within ISO (MGI:5489769|PMID:22437732) MGI PMID:22437732 MGI:5489769 NCBI chrNW_004955501:962,188...991,922
Ensembl chrNW_004955501:962,188...991,922
JBrowse link
G Clmp CXADR like membrane protein involved_in ISO (PMID:22155368) UniProt PMID:22155368 NCBI chrNW_004955412:23,876,003...23,984,603
Ensembl chrNW_004955412:23,876,003...23,970,119
JBrowse link
G Col3a1 collagen type III alpha 1 chain acts_upstream_of_or_within ISO (MGI:86656|PMID:9050868) MGI PMID:9050868 MGI:86656 NCBI chrNW_004955403:9,720,831...9,758,019
Ensembl chrNW_004955403:9,721,114...9,757,887
JBrowse link
G Dchs1 dachsous cadherin-related 1 acts_upstream_of_or_within ISO (MGI:4939936|PMID:21303848) MGI PMID:21303848 MGI:4939936 NCBI chrNW_004955414:22,331,590...22,365,761
Ensembl chrNW_004955414:22,332,059...22,351,576
JBrowse link
G Dicer1 dicer 1, ribonuclease III acts_upstream_of_or_within ISO (MGI:4946569|PMID:21307095) MGI PMID:21307095 MGI:4946569 NCBI chrNW_004955438:17,374,899...17,431,599
Ensembl chrNW_004955438:17,382,493...17,431,797
JBrowse link
G Ep300 E1A binding protein p300 ISO RGD PMID:17916272 RGD:2312267 NCBI chrNW_004955413:26,647,553...26,727,875
Ensembl chrNW_004955413:26,648,339...26,727,933
JBrowse link
G Fat4 FAT atypical cadherin 4 acts_upstream_of_or_within ISO (MGI:4939936|PMID:21303848) MGI PMID:21303848 MGI:4939936 NCBI chrNW_004955428:15,621,333...15,812,167
Ensembl chrNW_004955428:15,622,498...15,810,896
JBrowse link
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within ISO (MGI:3052435|PMID:15234214) MGI PMID:15234214 MGI:3052435 NCBI chrNW_004955446:18,163,117...18,244,840
Ensembl chrNW_004955446:18,163,117...18,245,199
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO (MGI:3052435|PMID:15234214) MGI PMID:15234214 MGI:3052435 NCBI chrNW_004955551:2,321,190...2,427,000 JBrowse link
G Foxf1 forkhead box F1 involved_in ISO (PMID:19500772) DFLAT PMID:19500772 NCBI chrNW_004955541:1,341,715...1,345,397
Ensembl chrNW_004955541:1,317,114...1,346,590
JBrowse link
G Hrh2 histamine receptor H2 acts_upstream_of_or_within ISO (MGI:3606849|PMID:15476751)
(MGI:1860000|PMID:10862789)
MGI PMID:10862789 PMID:15476751 MGI:1860000 MGI:3606849 NCBI chrNW_004955408:28,186,316...28,225,146
Ensembl chrNW_004955408:28,186,249...28,229,411
JBrowse link
G Kit KIT proto-oncogene, receptor tyrosine kinase involved_in ISO (MGI:3040777|PMID:15067126) UniProt PMID:15067126 MGI:3040777 NCBI chrNW_004955447:16,149,014...16,226,151
Ensembl chrNW_004955447:16,148,605...16,226,734
JBrowse link
G Lgr4 leucine rich repeat containing G protein-coupled receptor 4 acts_upstream_of_or_within ISO (MGI:5581372|PMID:24680895) MGI PMID:24680895 MGI:5581372 NCBI chrNW_004955476:6,611,102...6,629,294
Ensembl chrNW_004955476:6,610,103...6,629,264
JBrowse link
G LOC102010850 cytochrome P450 1A1 ISO RGD PMID:12162855 RGD:727721 NCBI chrNW_004955450:3,183,958...3,189,488
Ensembl chrNW_004955450:3,183,750...3,189,488
JBrowse link
G Mixl1 Mix paired-like homeobox acts_upstream_of_or_within ISO (MGI:2181739|PMID:12117810) MGI PMID:12117810 MGI:2181739 NCBI chrNW_004955489:418,650...422,428 JBrowse link
G Muc4 mucin 4, cell surface associated ISO RGD PMID:15389518 RGD:2303738 NCBI chrNW_004955420:12,228,801...12,274,840 JBrowse link
G Myocd myocardin acts_upstream_of_or_within ISO (MGI:4941650|PMID:21357509) MGI PMID:21357509 MGI:4941650 NCBI chrNW_004955467:4,653,065...4,743,438
Ensembl chrNW_004955467:4,656,380...4,743,110
JBrowse link
G Nkx2-2 NK2 homeobox 2 acts_upstream_of_or_within ISO (MGI:3835247|PMID:18987169) MGI PMID:18987169 MGI:3835247 NCBI chrNW_004955415:29,263,741...29,268,259
Ensembl chrNW_004955415:29,258,434...29,268,259
JBrowse link
G Nkx2-3 NK2 homeobox 3 acts_upstream_of_or_within ISO (MGI:1334782|PMID:10207146)
(MGI:1888604|PMID:10926756)
MGI PMID:10207146 PMID:10926756 MGI:1334782 MGI:1888604 NCBI chrNW_004955507:5,454,871...5,457,247
Ensembl chrNW_004955507:5,455,087...5,457,660
JBrowse link
G Nkx2-6 NK2 homeobox 6 acts_upstream_of_or_within ISO (PMID:9545560) BHF-UCL PMID:9545560 NCBI chrNW_004955403:46,831,758...46,836,358
Ensembl chrNW_004955403:46,831,696...46,836,333
JBrowse link
G Nr1h4 nuclear receptor subfamily 1 group H member 4 ISO RGD PMID:11984532 RGD:1625207 NCBI chrNW_004955405:36,160,360...36,236,258
Ensembl chrNW_004955405:36,160,049...36,237,751
JBrowse link
G Nts neurotensin ISO RGD PMID:8571204 RGD:9743850 NCBI chrNW_004955405:23,696,258...23,758,487
Ensembl chrNW_004955405:23,748,280...23,758,529
JBrowse link
G Oxtr oxytocin receptor ISO RGD PMID:19003903 RGD:2303961 NCBI chrNW_004955561:340,387...354,499
Ensembl chrNW_004955561:337,902...354,336
JBrowse link
G Pdgfa platelet derived growth factor subunit A acts_upstream_of_or_within
involved_in
ISO (MGI:5543868|PMID:23938297)
(MGI:1860627|PMID:10903171)
MGI
UniProt
PMID:10903171 PMID:23938297 MGI:1860627 MGI:5543868 NCBI chrNW_004955460:8,328,400...8,346,755
Ensembl chrNW_004955460:8,326,891...8,346,550
JBrowse link
G Pdgfc platelet derived growth factor C acts_upstream_of_or_within ISO (MGI:5543868|PMID:23938297) MGI PMID:23938297 MGI:5543868 NCBI chrNW_004955471:10,318,683...10,500,624
Ensembl chrNW_004955471:10,418,455...10,500,668
JBrowse link
G Pdx1 pancreatic and duodenal homeobox 1 acts_upstream_of_or_within ISO (MGI:4355651|PMID:19619492) MGI PMID:19619492 MGI:4355651 NCBI chrNW_004955497:7,281,886...7,307,969 JBrowse link
G Pkd1 polycystin 1, transient receptor potential channel interacting involved_in ISO (PMID:11891195) UniProt PMID:11891195 NCBI chrNW_004955442:15,132,555...15,178,377
Ensembl chrNW_004955442:15,145,640...15,178,377
JBrowse link
G Rb1 RB transcriptional corepressor 1 acts_upstream_of_or_within ISO (MGI:3703460|PMID:17257418) MGI PMID:17257418 MGI:3703460 NCBI chrNW_004955431:1,960,765...2,124,576
Ensembl chrNW_004955431:1,960,661...2,124,576
JBrowse link
G Slc4a2 solute carrier family 4 member 2 ISO RGD PMID:8770049 RGD:9999233 NCBI chrNW_004955491:5,498,472...5,513,389
Ensembl chrNW_004955491:5,499,033...5,517,319
JBrowse link
G Smo smoothened, frizzled class receptor acts_upstream_of_or_within ISO (MGI:4355651|PMID:19619492) MGI PMID:19619492 MGI:4355651 NCBI chrNW_004955479:9,963,377...9,991,670
Ensembl chrNW_004955479:9,964,170...9,993,165
JBrowse link
G Tgfb1 transforming growth factor beta 1 ISO RGD PMID:12815632 RGD:2302031 NCBI chrNW_004955555:274,405...288,441
Ensembl chrNW_004955555:270,652...288,441
JBrowse link
G Tgfb2 transforming growth factor beta 2 ISO RGD PMID:12815632 RGD:2302031 NCBI chrNW_004955406:174,949...249,248
Ensembl chrNW_004955406:172,814...249,248
JBrowse link
G Tgfb3 transforming growth factor beta 3 ISO RGD PMID:12815632 RGD:2302031 NCBI chrNW_004955438:33,129...55,180
Ensembl chrNW_004955438:29,415...55,180
JBrowse link
G Tgfbr1 transforming growth factor beta receptor 1 ISO RGD PMID:12815632 RGD:2302031 NCBI chrNW_004955419:26,490,899...26,546,349
Ensembl chrNW_004955419:26,490,899...26,547,017
JBrowse link
G Tgfbr2 transforming growth factor beta receptor 2 ISO RGD PMID:12815632 RGD:2302031 NCBI chrNW_004955430:21,919,338...21,999,688
Ensembl chrNW_004955430:21,932,553...22,001,837
JBrowse link
G Thra thyroid hormone receptor alpha ISO RGD PMID:17496154 RGD:2314319 NCBI chrNW_004955451:14,731,746...14,743,545
Ensembl chrNW_004955451:14,731,746...14,744,367
JBrowse link
G Tk1 thymidine kinase 1 ISO RGD PMID:6701043 RGD:2317231 NCBI chrNW_004955506:4,379,830...4,390,729
Ensembl chrNW_004955506:4,379,830...4,394,713
JBrowse link
cloaca development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ahi1 Abelson helper integration site 1 involved_in ISO (MGI:5306539|PMID:21959375) UniProt PMID:21959375 MGI:5306539 NCBI chrNW_004955439:1,277,185...1,460,296
Ensembl chrNW_004955439:1,276,760...1,474,202
JBrowse link
cloacal septation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO (PMID:17442697) UniProt PMID:17442697 NCBI chrNW_004955409:9,432,835...9,439,680
Ensembl chrNW_004955409:9,432,841...9,440,303
JBrowse link
G Tp63 tumor protein p63 acts_upstream_of_or_within ISO (MGI:2387879|PMID:12368184) MGI PMID:12368184 MGI:2387879 NCBI chrNW_004955420:18,178,639...18,384,786
Ensembl chrNW_004955420:18,176,155...18,384,786
JBrowse link
G Wnt11 Wnt family member 11 involved_in ISO (PMID:9757009) UniProt PMID:9757009 NCBI chrNW_004955414:15,674,478...15,694,758
Ensembl chrNW_004955414:15,674,940...15,694,883
JBrowse link
determination of digestive tract left/right asymmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccdc103 coiled-coil domain containing 103 involved_in ISO (PMID:22581229) BHF-UCL PMID:22581229 NCBI chrNW_004955451:17,690,148...17,693,285
Ensembl chrNW_004955451:17,690,368...17,693,285
JBrowse link
G Ccdc39 coiled-coil domain containing 39 involved_in ISO (PMID:22693285) BHF-UCL PMID:22693285 NCBI chrNW_004955420:9,689,076...9,727,806
Ensembl chrNW_004955420:9,690,295...9,727,835
JBrowse link
G Ccdc40 coiled-coil domain containing 40 involved_in ISO (PMID:22693285) BHF-UCL PMID:22693285 NCBI chrNW_004955506:2,783,837...2,840,248
Ensembl chrNW_004955506:2,784,548...2,838,026
JBrowse link
G Dnaaf1 dynein axonemal assembly factor 1 involved_in ISO (PMID:19944405) BHF-UCL PMID:19944405 NCBI chrNW_004955564:132,497...149,399 JBrowse link
G Megf8 multiple EGF like domains 8 acts_upstream_of_or_within ISO (MGI:3839019|PMID:18043505) MGI PMID:18043505 MGI:3839019 NCBI chrNW_004955555:549,921...591,978
Ensembl chrNW_004955555:548,416...591,978
JBrowse link
G Zic3 Zic family member 3 involved_in ISO (PMID:9354794) BHF-UCL PMID:9354794 NCBI chrNW_004955489:7,560,684...7,571,739
Ensembl chrNW_004955489:7,560,684...7,571,892
JBrowse link
determination of intestine left/right asymmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nphp3 nephrocystin 3 involved_in ISO (PMID:20007846) BHF-UCL PMID:20007846 NCBI chrNW_004955501:5,799,879...5,837,022 JBrowse link
determination of stomach left/right asymmetry term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nphp3 nephrocystin 3 involved_in ISO (PMID:18371931) BHF-UCL PMID:18371931 NCBI chrNW_004955501:5,799,879...5,837,022 JBrowse link
digestive tract mesoderm development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Shh sonic hedgehog signaling molecule ISO RGD PMID:9368764 RGD:2306312 NCBI chrNW_004955491:8,647,133...8,657,381 JBrowse link
digestive tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agr2 anterior gradient 2, protein disulphide isomerase family member involved_in ISO (MGI:5634869|PMID:25666625) UniProt PMID:25666625 MGI:5634869 NCBI chrNW_004955410:19,984,768...19,995,446
Ensembl chrNW_004955410:19,984,768...19,995,733
JBrowse link
G Bcl2 BCL2 apoptosis regulator acts_upstream_of_or_within ISO (MGI:70264|PMID:7812968) MGI PMID:7812968 MGI:70264 NCBI chrNW_004955402:46,911,125...47,084,214
Ensembl chrNW_004955402:46,916,266...47,084,485
JBrowse link
G Egfr epidermal growth factor receptor acts_upstream_of_or_within ISO (MGI:74263|PMID:7618084) MGI PMID:7618084 MGI:74263 NCBI chrNW_004955456:321,222...456,431 JBrowse link
G Ephb3 EPH receptor B3 involved_in ISO (MGI:2388849|PMID:12408869) UniProt PMID:12408869 MGI:2388849 NCBI chrNW_004955420:22,900,588...22,919,924
Ensembl chrNW_004955420:22,901,337...22,920,712
JBrowse link
G Fgfr3 fibroblast growth factor receptor 3 acts_upstream_of_or_within ISO (MGI:4352984|PMID:19407216) MGI PMID:19407216 MGI:4352984 NCBI chrNW_004955514:1,030,244...1,038,590
Ensembl chrNW_004955514:1,025,600...1,038,590
JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha acts_upstream_of_or_within ISO (MGI:4830408|PMID:20808783) MGI PMID:20808783 MGI:4830408 NCBI chrNW_004955466:8,000,311...8,022,497
Ensembl chrNW_004955466:8,000,044...8,022,497
JBrowse link
G Il18 interleukin 18 ISO RGD PMID:21088234 RGD:4889157 NCBI chrNW_004955412:13,807,361...13,826,007
Ensembl chrNW_004955412:13,806,553...13,825,634
JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO (MGI:2155575|PMID:11311163) MGI PMID:11311163 MGI:2155575 NCBI chrNW_004955437:20,828,448...20,835,486
Ensembl chrNW_004955437:20,828,448...20,835,628
JBrowse link
G Percc1 proline and glutamate rich with coiled coil 1 involved_in ISO (MGI:6368375|PMID:31217582) UniProt PMID:31217582 MGI:6368375 NCBI chrNW_004955442:15,800,513...15,803,478 JBrowse link
G Sfrp1 secreted frizzled related protein 1 acts_upstream_of_or_within ISO (MGI:3839161|PMID:19300477) MGI PMID:19300477 MGI:3839161 NCBI chrNW_004955536:1,663,721...1,702,678
Ensembl chrNW_004955536:1,663,344...1,703,514
JBrowse link
G Sfrp2 secreted frizzled related protein 2 acts_upstream_of_or_within ISO (MGI:3839161|PMID:19300477) MGI PMID:19300477 MGI:3839161 NCBI chrNW_004955471:8,103,937...8,112,596
Ensembl chrNW_004955471:8,103,783...8,112,321
JBrowse link
G Sfrp5 secreted frizzled related protein 5 acts_upstream_of_or_within ISO (MGI:3839161|PMID:19300477) MGI PMID:19300477 MGI:3839161 NCBI chrNW_004955507:3,836,607...3,841,910
Ensembl chrNW_004955507:3,836,607...3,841,910
JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO (MGI:1277744|PMID:9731532) MGI PMID:9731532 MGI:1277744 NCBI chrNW_004955491:8,647,133...8,657,381 JBrowse link
G Sox10 SRY-box transcription factor 10 acts_upstream_of_or_within ISO (MGI:3699432|PMID:15843399), (MGI:56157|PMID:6512238) MGI PMID:6512238 PMID:15843399 MGI:3699432 MGI:56157 NCBI chrNW_004955413:24,313,311...24,323,112
Ensembl chrNW_004955413:24,311,783...24,323,315
JBrowse link
G Stra6 signaling receptor and transporter of retinol STRA6 involved_in ISO (PMID:17273977) DFLAT PMID:17273977 NCBI chrNW_004955450:3,579,081...3,602,538
Ensembl chrNW_004955450:3,580,662...3,602,600
JBrowse link
G Stx2 syntaxin 2 ISO RGD PMID:12464668 RGD:1298909 NCBI chrNW_004955482:1,249,972...1,273,250
Ensembl chrNW_004955482:1,252,600...1,270,913
JBrowse link
G Tp73 tumor protein p73 acts_upstream_of_or_within ISO (MGI:1354064|PMID:10716451) MGI PMID:10716451 MGI:1354064 NCBI chrNW_004955486:7,914,608...7,961,992
Ensembl chrNW_004955486:7,914,440...7,952,982
JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 acts_upstream_of_or_within ISO (MGI:3839161|PMID:19300477) MGI PMID:19300477 MGI:3839161 NCBI chrNW_004955468:12,162,084...12,189,322
Ensembl chrNW_004955468:12,161,843...12,189,547
JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO (MGI:3839161|PMID:19300477) MGI PMID:19300477 MGI:3839161 NCBI chrNW_004955430:5,304,817...5,325,684
Ensembl chrNW_004955430:5,304,745...5,325,684
JBrowse link
embryonic digestive tract development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase acts_upstream_of_or_within ISO (MGI:74163|PMID:7670465) MGI PMID:7670465 MGI:74163 NCBI chrNW_004955445:12,696,096...12,717,488
Ensembl chrNW_004955445:12,696,096...12,717,488
JBrowse link
G Aldh1a2 aldehyde dehydrogenase 1 family member A2 acts_upstream_of_or_within ISO (MGI:3663954|PMID:16806149) MGI PMID:16806149 MGI:3663954 NCBI chrNW_004955450:16,406,578...16,453,048
Ensembl chrNW_004955450:16,406,436...16,453,180
JBrowse link
G Cxcl8 C-X-C motif chemokine ligand 8 involved_in ISO (PMID:20875417) DFLAT PMID:20875417 NCBI chrNW_004955474:247,326...250,355
Ensembl chrNW_004955474:241,501...250,643
JBrowse link
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within ISO (MGI:3611702|PMID:16308329) MGI PMID:16308329 MGI:3611702 NCBI chrNW_004955446:18,163,117...18,244,840
Ensembl chrNW_004955446:18,163,117...18,245,199
JBrowse link
G Fgf9 fibroblast growth factor 9 acts_upstream_of_or_within ISO (MGI:3611702|PMID:16308329) MGI PMID:16308329 MGI:3611702 NCBI chrNW_004955497:2,199,424...2,232,088
Ensembl chrNW_004955497:2,199,409...2,235,893
JBrowse link
G Foxf1 forkhead box F1 acts_upstream_of_or_within ISO (MGI:3617131|PMID:16439479) MGI PMID:16439479 MGI:3617131 NCBI chrNW_004955541:1,341,715...1,345,397
Ensembl chrNW_004955541:1,317,114...1,346,590
JBrowse link
G Foxf2 forkhead box F2 acts_upstream_of_or_within ISO (MGI:3617131|PMID:16439479) MGI PMID:16439479 MGI:3617131 NCBI chrNW_004955465:11,740,374...11,744,619
Ensembl chrNW_004955465:11,740,323...11,744,619
JBrowse link
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO (MGI:1353327|PMID:10693670) MGI PMID:10693670 MGI:1353327 NCBI chrNW_004955459:8,892,917...9,124,672
Ensembl chrNW_004955459:8,892,869...9,118,499
JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (MGI:1353327|PMID:10693670) MGI PMID:10693670 MGI:1353327 NCBI chrNW_004955460:1,528,457...1,805,584
Ensembl chrNW_004955460:1,528,412...1,805,918
JBrowse link
G Myb MYB proto-oncogene, transcription factor acts_upstream_of_or_within ISO (MGI:1346939|PMID:10523863) MGI PMID:10523863 MGI:1346939 NCBI chrNW_004955439:1,523,516...1,560,185
Ensembl chrNW_004955439:1,521,292...1,560,220
JBrowse link
G Pcsk5 proprotein convertase subtilisin/kexin type 5 involved_in ISO (PMID:18519639)
(MGI:3795695|PMID:18519639)
BHF-UCL PMID:18519639 MGI:3795695 NCBI chrNW_004955512:2,914,834...3,333,440
Ensembl chrNW_004955512:2,917,243...3,333,688
JBrowse link
G Pkdcc protein kinase domain containing, cytoplasmic involved_in ISO (MGI:3813934|PMID:19097194) UniProt PMID:19097194 MGI:3813934 NCBI chrNW_004955441:9,462,530...9,471,446
Ensembl chrNW_004955441:9,462,530...9,471,446
JBrowse link
G Rarb retinoic acid receptor beta involved_in ISO (PMID:19443732) DFLAT PMID:19443732 NCBI chrNW_004955430:17,067,536...17,457,558
Ensembl chrNW_004955430:17,295,174...17,460,045
JBrowse link
G Rarres2 retinoic acid receptor responder 2 involved_in ISO (PMID:19443732) DFLAT PMID:19443732 NCBI chrNW_004955491:4,954,809...4,957,724
Ensembl chrNW_004955491:4,955,068...4,956,956
JBrowse link
G Sall1 spalt like transcription factor 1 involved_in ISO (PMID:18280297) UniProt PMID:18280297 NCBI chrNW_004955433:9,146,074...9,161,171
Ensembl chrNW_004955433:9,144,748...9,161,171
JBrowse link
G Sct secretin ISO RGD PMID:1711228 RGD:729899 NCBI chrNW_004955476:11,433,857...11,434,662
Ensembl chrNW_004955476:11,433,969...11,434,574
JBrowse link
G Stra6 signaling receptor and transporter of retinol STRA6 involved_in ISO (PMID:17273977) DFLAT PMID:17273977 NCBI chrNW_004955450:3,579,081...3,602,538
Ensembl chrNW_004955450:3,580,662...3,602,600
JBrowse link
G Tgfb2 transforming growth factor beta 2 involved_in ISO (PMID:20875417) DFLAT PMID:20875417 NCBI chrNW_004955406:174,949...249,248
Ensembl chrNW_004955406:172,814...249,248
JBrowse link
G Tnf tumor necrosis factor involved_in ISO (PMID:20875417) DFLAT PMID:20875417 NCBI chrNW_004955437:117,267...119,899
Ensembl chrNW_004955437:117,206...120,700
JBrowse link
embryonic digestive tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within ISO (MGI:3722952|PMID:16618415)
(MGI:3040447|PMID:15017552)
MGI PMID:15017552 PMID:16618415 MGI:3040447 MGI:3722952 NCBI chrNW_004955446:18,163,117...18,244,840
Ensembl chrNW_004955446:18,163,117...18,245,199
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO (MGI:5285062|PMID:21550054)
(MGI:3722952|PMID:16618415), (MGI:5317412|PMID:21492869)
MGI PMID:16618415 PMID:21492869 PMID:21550054 MGI:3722952 MGI:5285062 MGI:5317412 NCBI chrNW_004955551:2,321,190...2,427,000 JBrowse link
G Foxf1 forkhead box F1 involved_in ISO (PMID:19500772) DFLAT PMID:19500772 NCBI chrNW_004955541:1,341,715...1,345,397
Ensembl chrNW_004955541:1,317,114...1,346,590
JBrowse link
G Gata4 GATA binding protein 4 acts_upstream_of_or_within ISO (MGI:3590399|PMID:16127717) MGI PMID:16127717 MGI:3590399 NCBI chrNW_004955403:52,958,318...53,029,267
Ensembl chrNW_004955403:52,987,644...53,029,267
JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (MGI:3608164|PMID:16247775) MGI PMID:16247775 MGI:3608164 NCBI chrNW_004955460:1,528,457...1,805,584
Ensembl chrNW_004955460:1,528,412...1,805,918
JBrowse link
G Hlx H2.0 like homeobox acts_upstream_of_or_within ISO (MGI:79044|PMID:8557196) MGI PMID:8557196 MGI:79044 NCBI chrNW_004955520:2,937,131...2,941,170
Ensembl chrNW_004955520:2,936,815...2,941,170
JBrowse link
G Hnf1b HNF1 homeobox B acts_upstream_of_or_within ISO (MGI:3807614|PMID:18635606) MGI PMID:18635606 MGI:3807614 NCBI chrNW_004955451:320,283...371,420
Ensembl chrNW_004955451:320,283...371,420
JBrowse link
G Id2 inhibitor of DNA binding 2 involved_in ISO (MGI:4399020|PMID:16888283) UniProt PMID:16888283 MGI:4399020 NCBI chrNW_004955487:878,326...880,783
Ensembl chrNW_004955487:878,326...880,783
JBrowse link
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within ISO (MGI:1858523|PMID:10821773) MGI PMID:10821773 MGI:1858523 NCBI chrNW_004955453:14,376,665...14,382,536
Ensembl chrNW_004955453:14,376,718...14,381,747
JBrowse link
G Nipbl NIPBL cohesin loading factor involved_in ISO (PMID:19242925), (PMID:8291537) BHF-UCL PMID:8291537 PMID:19242925 NCBI chrNW_004955426:21,666,958...21,841,515
Ensembl chrNW_004955426:21,666,857...21,841,515
JBrowse link
G Ovol2 ovo like zinc finger 2 acts_upstream_of_or_within ISO (MGI:3618450|PMID:16423343) MGI PMID:16423343 MGI:3618450 NCBI chrNW_004955415:26,825,284...26,843,438
Ensembl chrNW_004955415:26,825,284...26,843,438
JBrowse link
G Pdgfra platelet derived growth factor receptor alpha involved_in ISO (MGI:1860627|PMID:10903171) UniProt PMID:10903171 MGI:1860627 NCBI chrNW_004955447:16,570,652...16,613,410
Ensembl chrNW_004955447:16,569,909...16,612,373
JBrowse link
G Pitx2 paired like homeodomain 2 acts_upstream_of_or_within ISO (MGI:5285062|PMID:21550054) MGI PMID:21550054 MGI:5285062 NCBI chrNW_004955457:15,803,493...15,823,193
Ensembl chrNW_004955457:15,803,219...15,823,310
JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO (MGI:1858523|PMID:10821773) MGI PMID:10821773 MGI:1858523 NCBI chrNW_004955491:8,647,133...8,657,381 JBrowse link
G Shox2 short stature homeobox 2 acts_upstream_of_or_within ISO (MGI:3604918|PMID:16141225) MGI PMID:16141225 MGI:3604918 NCBI chrNW_004955448:8,937,656...8,947,890
Ensembl chrNW_004955448:8,937,610...8,947,890
JBrowse link
G Six2 SIX homeobox 2 involved_in ISO (MGI:4365896|PMID:19660448) UniProt PMID:19660448 MGI:4365896 NCBI chrNW_004955441:12,029,530...12,033,214
Ensembl chrNW_004955441:12,029,480...12,033,214
JBrowse link
G Sox11 SRY-box transcription factor 11 involved_in ISO (MGI:3052265|PMID:15254231) UniProt PMID:15254231 MGI:3052265 NCBI chrNW_004955487:2,678,961...2,680,869
Ensembl chrNW_004955487:2,679,145...2,680,521
JBrowse link
G Tcf21 transcription factor 21 ISO RGD PMID:11804032 RGD:727206 NCBI chrNW_004955439:2,617,562...2,620,613
Ensembl chrNW_004955439:2,617,492...2,620,644
JBrowse link
G Tcf7 transcription factor 7 acts_upstream_of_or_within ISO (MGI:3042541|PMID:15057272) MGI PMID:15057272 MGI:3042541 NCBI chrNW_004955408:5,362,423...5,388,684
Ensembl chrNW_004955408:5,362,084...5,388,527
JBrowse link
G Tcf7l2 transcription factor 7 like 2 acts_upstream_of_or_within ISO (MGI:3042541|PMID:15057272) MGI PMID:15057272 MGI:3042541 NCBI chrNW_004955431:18,020,309...18,207,926
Ensembl chrNW_004955431:18,020,409...18,209,134
JBrowse link
embryonic ectodermal digestive tract development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Vps52 VPS52 subunit of GARP complex acts_upstream_of_or_within ISO (MGI:5449815|PMID:23142660) MGI PMID:23142660 MGI:5449815 NCBI chrNW_004955437:1,820,355...1,833,615
Ensembl chrNW_004955437:1,820,817...1,833,363
JBrowse link
embryonic ectodermal digestive tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxf1 forkhead box F1 involved_in ISO (PMID:19500772) DFLAT PMID:19500772 NCBI chrNW_004955541:1,341,715...1,345,397
Ensembl chrNW_004955541:1,317,114...1,346,590
JBrowse link
embryonic foregut morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr2b activin A receptor type 2B acts_upstream_of_or_within ISO (MGI:1861876|PMID:10921901) MGI PMID:10921901 MGI:1861876 NCBI chrNW_004955427:25,438,652...25,467,360
Ensembl chrNW_004955427:25,438,652...25,467,360
JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within ISO (MGI:3820452|PMID:18692041) MGI PMID:18692041 MGI:3820452 NCBI chrNW_004955420:29,030,716...29,047,447
Ensembl chrNW_004955420:29,030,716...29,047,449
JBrowse link
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 acts_upstream_of_or_within ISO (MGI:3821807|PMID:18794329) MGI PMID:18794329 MGI:3821807 NCBI chrNW_004955459:9,641,926...9,783,718
Ensembl chrNW_004955459:9,641,884...9,784,173
JBrowse link
G Foxf1 forkhead box F1 acts_upstream_of_or_within ISO (MGI:2135612|PMID:11493558) MGI PMID:11493558 MGI:2135612 NCBI chrNW_004955541:1,341,715...1,345,397
Ensembl chrNW_004955541:1,317,114...1,346,590
JBrowse link
G Foxp4 forkhead box P4 acts_upstream_of_or_within ISO (MGI:3054576|PMID:15361625) MGI PMID:15361625 MGI:3054576 NCBI chrNW_004955437:8,029,346...8,056,243
Ensembl chrNW_004955437:8,014,939...8,057,033
JBrowse link
G Gata4 GATA binding protein 4 acts_upstream_of_or_within ISO (MGI:87489|PMID:9136933)
(MGI:87488|PMID:9136932)
MGI PMID:9136932 PMID:9136933 MGI:87488 MGI:87489 NCBI chrNW_004955403:52,958,318...53,029,267
Ensembl chrNW_004955403:52,987,644...53,029,267
JBrowse link
G Nckap1 NCK associated protein 1 acts_upstream_of_or_within ISO (MGI:3701029|PMID:16831833) MGI PMID:16831833 MGI:3701029 NCBI chrNW_004955403:14,476,689...14,554,380
Ensembl chrNW_004955403:14,480,162...14,554,702
JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO (MGI:1277744|PMID:9731532) MGI PMID:9731532 MGI:1277744 NCBI chrNW_004955491:8,647,133...8,657,381 JBrowse link
G Smad2 SMAD family member 2 acts_upstream_of_or_within ISO (MGI:3618021|PMID:15183723) MGI PMID:15183723 MGI:3618021 NCBI chrNW_004955402:33,131,760...33,217,144
Ensembl chrNW_004955402:33,136,778...33,216,844
JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of_or_within ISO (MGI:3618021|PMID:15183723) MGI PMID:15183723 MGI:3618021 NCBI chrNW_004955450:8,747,651...8,842,003
Ensembl chrNW_004955450:8,747,651...8,842,136
JBrowse link
G Sox17 SRY-box transcription factor 17 involved_in
acts_upstream_of_or_within
ISO (MGI:4946573|PMID:21305474)
(MGI:4355651|PMID:19619492)
(MGI:4415813|PMID:18462699)
BHF-UCL
MGI
PMID:18462699 PMID:19619492 PMID:21305474 MGI:4355651 MGI:4415813 MGI:4946573 NCBI chrNW_004955454:13,689,403...13,690,019 JBrowse link
embryonic hindgut morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dact1 dishevelled binding antagonist of beta catenin 1 involved_in ISO (MGI:4457465|PMID:20145239) UniProt PMID:20145239 MGI:4457465 NCBI chrNW_004955466:12,367,760...12,374,141
Ensembl chrNW_004955466:12,367,775...12,373,036
JBrowse link
G Hoxa13 homeobox A13 ISO RGD PMID:17161201 RGD:1599527 NCBI chrNW_004955410:28,887,952...28,893,515
Ensembl chrNW_004955410:28,890,171...28,893,515
JBrowse link
G Hoxd13 homeobox D13 ISO RGD PMID:17161201 RGD:1599527 NCBI chrNW_004955403:20,568,314...20,575,579
Ensembl chrNW_004955403:20,568,314...20,575,579
JBrowse link
G Tcf7 transcription factor 7 acts_upstream_of_or_within ISO (MGI:3042541|PMID:15057272) MGI PMID:15057272 MGI:3042541 NCBI chrNW_004955408:5,362,423...5,388,684
Ensembl chrNW_004955408:5,362,084...5,388,527
JBrowse link
G Tcf7l2 transcription factor 7 like 2 acts_upstream_of_or_within ISO (MGI:3042541|PMID:15057272) MGI PMID:15057272 MGI:3042541 NCBI chrNW_004955431:18,020,309...18,207,926
Ensembl chrNW_004955431:18,020,409...18,209,134
JBrowse link
endodermal digestive tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgfr2 fibroblast growth factor receptor 2 acts_upstream_of_or_within ISO (MGI:5285062|PMID:21550054) MGI PMID:21550054 MGI:5285062 NCBI chrNW_004955551:2,321,190...2,427,000 JBrowse link
G Id2 inhibitor of DNA binding 2 acts_upstream_of_or_within ISO (PMID:16888283) UniProt PMID:16888283 NCBI chrNW_004955487:878,326...880,783
Ensembl chrNW_004955487:878,326...880,783
JBrowse link
G Pitx2 paired like homeodomain 2 acts_upstream_of_or_within ISO (MGI:5285062|PMID:21550054) MGI PMID:21550054 MGI:5285062 NCBI chrNW_004955457:15,803,493...15,823,193
Ensembl chrNW_004955457:15,803,219...15,823,310
JBrowse link
G Sox17 SRY-box transcription factor 17 involved_in ISO (MGI:4946573|PMID:21305474) BHF-UCL PMID:21305474 MGI:4946573 NCBI chrNW_004955454:13,689,403...13,690,019 JBrowse link
enteric smooth muscle cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ednrb endothelin receptor type B involved_in ISO (MGI:1330409|PMID:10021336) BHF-UCL PMID:10021336 MGI:1330409 NCBI chrNW_004955404:29,394,253...29,425,358
Ensembl chrNW_004955404:29,394,164...29,425,358
JBrowse link
foregut morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Notch1 notch receptor 1 acts_upstream_of_or_within ISO (MGI:3603059|PMID:16107537) MGI PMID:16107537 MGI:3603059 NCBI chrNW_004955513:4,225,939...4,264,875
Ensembl chrNW_004955513:4,225,956...4,263,259
JBrowse link
hindgut development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ift172 intraflagellar transport 172 acts_upstream_of_or_within ISO (MGI:5285455|PMID:21653639) MGI PMID:21653639 MGI:5285455 NCBI chrNW_004955469:9,418,599...9,455,026
Ensembl chrNW_004955469:9,418,609...9,455,026
JBrowse link
hindgut morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli2 GLI family zinc finger 2 acts_upstream_of_or_within ISO (MGI:2148409|PMID:11485934) MGI PMID:11485934 MGI:2148409 NCBI chrNW_004955459:8,892,917...9,124,672
Ensembl chrNW_004955459:8,892,869...9,118,499
JBrowse link
G Gli3 GLI family zinc finger 3 acts_upstream_of_or_within ISO (MGI:2148409|PMID:11485934) MGI PMID:11485934 MGI:2148409 NCBI chrNW_004955460:1,528,457...1,805,584
Ensembl chrNW_004955460:1,528,412...1,805,918
JBrowse link
G Shh sonic hedgehog signaling molecule acts_upstream_of_or_within ISO (MGI:2148409|PMID:11485934) MGI PMID:11485934 MGI:2148409 NCBI chrNW_004955491:8,647,133...8,657,381 JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO (MGI:3822053|PMID:18804104) MGI PMID:18804104 MGI:3822053 NCBI chrNW_004955430:5,304,817...5,325,684
Ensembl chrNW_004955430:5,304,745...5,325,684
JBrowse link
intestinal epithelial cell development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C1galt1 core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 acts_upstream_of_or_within ISO (MGI:5002772|PMID:21383503) MGI PMID:21383503 MGI:5002772 NCBI chrNW_004955432:14,298,873...14,353,824
Ensembl chrNW_004955432:14,298,822...14,353,824
JBrowse link
G Cdh1 cadherin 1 acts_upstream_of_or_within ISO (MGI:5449145|PMID:22766025) MGI PMID:22766025 MGI:5449145 NCBI chrNW_004955484:7,782,409...7,861,082
Ensembl chrNW_004955484:7,782,772...7,860,967
JBrowse link
G Dicer1 dicer 1, ribonuclease III acts_upstream_of_or_within ISO (MGI:4946569|PMID:21307095) MGI PMID:21307095 MGI:4946569 NCBI chrNW_004955438:17,374,899...17,431,599
Ensembl chrNW_004955438:17,382,493...17,431,797
JBrowse link
G Gsdmc gasdermin C acts_upstream_of_or_within ISO (PMID:17350798) UniProt PMID:17350798 NCBI chrNW_004955461:4,594,967...4,610,037 JBrowse link
G Il6st interleukin 6 cytokine family signal transducer involved_in ISO (PMID:25731159)
(MGI:5629863|PMID:25731159)
UniProt PMID:25731159 MGI:5629863 NCBI chrNW_004955446:11,790,636...11,837,734
Ensembl chrNW_004955446:11,790,444...11,835,001
JBrowse link
G Klf5 Kruppel like factor 5 acts_upstream_of_or_within ISO (MGI:5471906|PMID:23266329) MGI PMID:23266329 MGI:5471906 NCBI chrNW_004955404:33,642,604...33,665,445
Ensembl chrNW_004955404:33,644,077...33,658,094
JBrowse link
G Nkx3-2 NK3 homeobox 2 acts_upstream_of_or_within ISO (MGI:4946569|PMID:21307095) MGI PMID:21307095 MGI:4946569 NCBI chrNW_004955480:10,212,929...10,215,814
Ensembl chrNW_004955480:10,213,761...10,216,860
JBrowse link
G Prdm1 PR/SET domain 1 acts_upstream_of_or_within ISO (MGI:5014435|PMID:21670299) MGI PMID:21670299 MGI:5014435 NCBI chrNW_004955411:31,434,503...31,455,995
Ensembl chrNW_004955411:31,434,503...31,456,056
JBrowse link
G Spdef SAM pointed domain containing ETS transcription factor acts_upstream_of_or_within ISO (MGI:4410300|PMID:19549527) MGI PMID:19549527 MGI:4410300 NCBI chrNW_004955437:2,667,499...2,679,940
Ensembl chrNW_004955437:2,666,105...2,680,061
JBrowse link
G Src SRC proto-oncogene, non-receptor tyrosine kinase involved_in ISO (PMID:25731159)
(MGI:5629863|PMID:25731159)
UniProt PMID:25731159 MGI:5629863 NCBI chrNW_004955445:19,213,210...19,227,670
Ensembl chrNW_004955445:19,215,161...19,228,695
JBrowse link
G Tigar TP53 induced glycolysis regulatory phosphatase acts_upstream_of_or_within ISO (MGI:5498602|PMID:23726973) MGI PMID:23726973 MGI:5498602 NCBI chrNW_004955413:2,129,719...2,153,873
Ensembl chrNW_004955413:2,129,678...2,154,380
JBrowse link
G Yap1 Yes1 associated transcriptional regulator involved_in ISO (PMID:25731159)
(MGI:5629863|PMID:25731159)
UniProt PMID:25731159 MGI:5629863 NCBI chrNW_004955412:5,423,866...5,533,728
Ensembl chrNW_004955412:5,423,855...5,534,408
JBrowse link
G Yipf6 Yip1 domain family member 6 acts_upstream_of_or_within ISO (MGI:5437477|PMID:22802641) MGI PMID:22802641 MGI:5437477 NCBI chrNW_004955475:8,085,017...8,101,624
Ensembl chrNW_004955475:8,084,886...8,101,624
JBrowse link
intestinal epithelial cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cbfa2t2 CBFA2/RUNX1 partner transcriptional co-repressor 2 involved_in ISO (MGI:5629454|PMID:25398765) UniProt PMID:25398765 MGI:5629454 NCBI chrNW_004955422:27,671,215...27,809,384
Ensembl chrNW_004955422:27,671,215...27,809,381
JBrowse link
G Cdx2 caudal type homeobox 2 involved_in ISO (MGI:5301472|PMID:22015720) UniProt PMID:22015720 MGI:5301472 NCBI chrNW_004955497:7,316,372...7,321,627 JBrowse link
G Gata4 GATA binding protein 4 acts_upstream_of_or_within ISO (PMID:9566909) MGI PMID:9566909 NCBI chrNW_004955403:52,958,318...53,029,267
Ensembl chrNW_004955403:52,987,644...53,029,267
JBrowse link
G Gata5 GATA binding protein 5 acts_upstream_of_or_within ISO (PMID:9566909) MGI PMID:9566909 NCBI chrNW_004955528:1,595,231...1,604,979
Ensembl chrNW_004955528:1,595,231...1,604,979
JBrowse link
G Ptk6 protein tyrosine kinase 6 involved_in ISO (MGI:3640030|PMID:16782882) UniProt PMID:16782882 MGI:3640030 NCBI chrNW_004955528:687,996...695,596
Ensembl chrNW_004955528:687,996...695,596
JBrowse link
G Sav1 salvador family WW domain containing protein 1 acts_upstream_of_or_within ISO (MGI:3785211|PMID:18369314) MGI PMID:18369314 MGI:3785211 NCBI chrNW_004955409:12,200,721...12,221,520
Ensembl chrNW_004955409:12,200,721...12,220,410
JBrowse link
intestinal epithelial cell maturation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdkn1a cyclin dependent kinase inhibitor 1A ISO RGD PMID:20466941 RGD:8662316 NCBI chrNW_004955437:6,254,638...6,261,278
Ensembl chrNW_004955437:6,254,309...6,261,479
JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha acts_upstream_of_or_within ISO (MGI:4830408|PMID:20808783) MGI PMID:20808783 MGI:4830408 NCBI chrNW_004955466:8,000,311...8,022,497
Ensembl chrNW_004955466:8,000,044...8,022,497
JBrowse link
G Hoxa5 homeobox A5 acts_upstream_of_or_within ISO (MGI:1349338|PMID:10564089) MGI PMID:10564089 MGI:1349338 NCBI chrNW_004955410:28,835,795...28,838,244
Ensembl chrNW_004955410:28,834,127...28,838,244
JBrowse link
G Tyms thymidylate synthetase ISO RGD PMID:1260861 RGD:2317427 NCBI chrNW_004955402:9,295,862...9,304,952
Ensembl chrNW_004955402:9,296,321...9,306,631
JBrowse link
midgut development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a2 aldehyde dehydrogenase 1 family member A2 ISO RGD PMID:15964596 RGD:1643113 NCBI chrNW_004955450:16,406,578...16,453,048
Ensembl chrNW_004955450:16,406,436...16,453,180
JBrowse link
G Arg2 arginase 2 ISO RGD PMID:10050048 RGD:4144052 NCBI chrNW_004955466:2,549,557...2,577,060
Ensembl chrNW_004955466:2,549,557...2,577,060
JBrowse link
G Asl argininosuccinate lyase ISO RGD PMID:9544996 RGD:4139911 NCBI chrNW_004955456:8,409,767...8,419,915 JBrowse link
G Ass1 argininosuccinate synthase 1 ISO RGD PMID:9544996 RGD:4139911 NCBI chrNW_004955513:443,372...485,190
Ensembl chrNW_004955513:445,462...485,190
JBrowse link
G Cps1 carbamoyl-phosphate synthase 1 ISO RGD PMID:9544996 RGD:4139911 NCBI chrNW_004955457:4,848,116...4,961,384
Ensembl chrNW_004955457:4,844,152...4,961,246
JBrowse link
G Ctnnb1 catenin beta 1 ISO RGD PMID:17356920 RGD:2289844 NCBI chrNW_004955420:29,030,716...29,047,447
Ensembl chrNW_004955420:29,030,716...29,047,449
JBrowse link
G Dab1 DAB adaptor protein 1 ISO RGD PMID:19946030 RGD:2317766 NCBI chrNW_004955464:2,325,529...2,721,497
Ensembl chrNW_004955464:2,455,346...2,724,358
JBrowse link
G Egfr epidermal growth factor receptor ISO RGD PMID:7926492 RGD:10395256 NCBI chrNW_004955456:321,222...456,431 JBrowse link
G Foxf1 forkhead box F1 involved_in ISO (PMID:19500772) DFLAT PMID:19500772 NCBI chrNW_004955541:1,341,715...1,345,397
Ensembl chrNW_004955541:1,317,114...1,346,590
JBrowse link
G Hmgcs2 3-hydroxy-3-methylglutaryl-CoA synthase 2 ISO RGD PMID:8620869 RGD:2326125 NCBI chrNW_004955435:22,804,484...22,820,807
Ensembl chrNW_004955435:22,804,484...22,821,482
JBrowse link
G Otc ornithine transcarbamylase ISO RGD PMID:9544996 RGD:4139911 NCBI chrNW_004955601:481,524...543,176
Ensembl chrNW_004955601:481,480...543,176
JBrowse link
G Reln reelin ISO RGD PMID:19946030 RGD:2317766 NCBI chrNW_004955410:8,424,439...8,863,966
Ensembl chrNW_004955410:8,424,394...8,863,969
JBrowse link
G Rxra retinoid X receptor alpha ISO RGD PMID:15964596 RGD:1643113 NCBI chrNW_004955513:3,313,544...3,386,544
Ensembl chrNW_004955513:3,335,897...3,386,994
JBrowse link
G Smo smoothened, frizzled class receptor involved_in ISO (MGI:5142377|PMID:11517919) BHF-UCL PMID:11517919 MGI:5142377 NCBI chrNW_004955479:9,963,377...9,991,670
Ensembl chrNW_004955479:9,964,170...9,993,165
JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within ISO (MGI:3833777|PMID:19100728) MGI PMID:19100728 MGI:3833777 NCBI chrNW_004955430:5,304,817...5,325,684
Ensembl chrNW_004955430:5,304,745...5,325,684
JBrowse link
negative regulation of stomach neuroendocrine cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hes1 hes family bHLH transcription factor 1 acts_upstream_of_or_within ISO (MGI:3804618|PMID:18173746) MGI PMID:18173746 MGI:3804618 NCBI chrNW_004955420:14,565,921...14,568,447
Ensembl chrNW_004955420:14,564,283...14,568,447
JBrowse link
negative regulation of Wnt signaling pathway involved in digestive tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Sfrp5 secreted frizzled related protein 5 involved_in ISO (PMID:18981481) BHF-UCL PMID:18981481 NCBI chrNW_004955507:3,836,607...3,841,910
Ensembl chrNW_004955507:3,836,607...3,841,910
JBrowse link
pharynx development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crkl CRK like proto-oncogene, adaptor protein acts_upstream_of_or_within ISO (MGI:6102264|PMID:25565927) MGI PMID:25565927 MGI:6102264 NCBI chrNW_004955442:19,358,202...19,388,552
Ensembl chrNW_004955442:19,358,081...19,388,815
JBrowse link
G Foxe1 forkhead box E1 involved_in ISO (PMID:15494458) UniProt PMID:15494458 NCBI chrNW_004955419:27,616,606...27,619,908 JBrowse link
G Tbx2 T-box transcription factor 2 involved_in ISO (MGI:3487212|PMID:15459098) BHF-UCL PMID:15459098 MGI:3487212 NCBI chrNW_004955451:2,458,612...2,466,264
Ensembl chrNW_004955451:2,457,568...2,466,639
JBrowse link
post-embryonic digestive tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nkx2-3 NK2 homeobox 3 acts_upstream_of_or_within ISO (MGI:1888604|PMID:10926756) MGI PMID:10926756 MGI:1888604 NCBI chrNW_004955507:5,454,871...5,457,247
Ensembl chrNW_004955507:5,455,087...5,457,660
JBrowse link
posterior midgut development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ednrb endothelin receptor type B acts_upstream_of_or_within ISO (MGI:77408|PMID:8582288) MGI PMID:8582288 MGI:77408 NCBI chrNW_004955404:29,394,253...29,425,358
Ensembl chrNW_004955404:29,394,164...29,425,358
JBrowse link
stomach development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ext1 exostosin glycosyltransferase 1 acts_upstream_of_or_within ISO (MGI:6160687|PMID:29700203) MGI PMID:29700203 MGI:6160687 NCBI chrNW_004955417:23,798,044...24,067,759
Ensembl chrNW_004955417:23,798,393...24,067,100
JBrowse link
G Kcnq1 potassium voltage-gated channel subfamily Q member 1 involved_in ISO (MGI:3512716|PMID:15385447) MGI PMID:15385447 MGI:3512716 NCBI chrNW_004955422:14,212,563...14,544,556
Ensembl chrNW_004955422:14,212,553...14,544,556
JBrowse link
stomach neuroendocrine cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ascl1 achaete-scute family bHLH transcription factor 1 acts_upstream_of_or_within ISO (MGI:3804618|PMID:18173746) MGI PMID:18173746 MGI:3804618 NCBI chrNW_004955405:37,941,243...37,943,641
Ensembl chrNW_004955405:37,941,243...37,943,641
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 11974
    multicellular organismal process 6234
      multicellular organism development 4860
        tube development 1100
          digestive tract development 153
            determination of digestive tract left/right asymmetry + 7
            digestive tract mesoderm development 1
            digestive tract morphogenesis + 56
            ectodermal digestive tract development + 2
            embryonic digestive tract development + 37
            enteric smooth muscle cell differentiation 1
            hindgut development + 10
            intestinal epithelial cell differentiation + 23
            midgut development + 16
            pharynx development + 3
            stomach development + 5
Path 2
Term Annotations click to browse term
  biological_process 11974
    developmental process 5676
      anatomical structure development 5305
        multicellular organism development 4860
          system development 4581
            digestive system development 167
              digestive tract development 153
                determination of digestive tract left/right asymmetry + 7
                digestive tract mesoderm development 1
                digestive tract morphogenesis + 56
                ectodermal digestive tract development + 2
                embryonic digestive tract development + 37
                enteric smooth muscle cell differentiation 1
                hindgut development + 10
                intestinal epithelial cell differentiation + 23
                midgut development + 16
                pharynx development + 3
                stomach development + 5
paths to the root