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ONTOLOGY REPORT - ANNOTATIONS


Term:digestive tract development
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Accession:GO:0048565 term browser browse the term
Definition:The process whose specific outcome is the progression of the digestive tract over time, from its formation to the mature structure. The digestive tract is the anatomical structure through which food passes and is processed.
Synonyms:narrow_synonym: intestinal development;   intestine development
 broad_synonym: gut development


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digestive tract development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALX4 ALX homeobox 4 ISO (MGI:MGI:1095762|PMID:9268572) MGI PMID:9268572 MGI:MGI:1095762 NCBI chr11:44,219,865...44,269,597 JBrowse link
G CCKBR cholecystokinin B receptor ISO (MGI:MGI:3606849|PMID:15476751) MGI PMID:15476751 MGI:MGI:3606849 NCBI chr11:6,393,435...6,405,821
Ensembl chr11:6,075,816...6,088,145
JBrowse link
G CCNB1 cyclin B1 ISO perinatal small intestine RGD PMID:17692466 RGD:2316322 NCBI chr 5:44,826,103...44,836,832
Ensembl chr 5:46,394,362...46,405,332
JBrowse link
G CD36 CD36 molecule ISO RGD PMID:11595646 RGD:628450 NCBI chr 7:72,566,478...72,643,517
Ensembl chr 7:86,265,114...86,305,865
JBrowse link
G CHD8 chromodomain helicase DNA binding protein 8 ISO (PMID:24998929)
(MGI:MGI:5792969|PMID:27602517)
GO_Central
MGI
PMID:24998929, PMID:27602517 MGI:MGI:5792969 NCBI chr14:2,202,847...2,274,012
Ensembl chr14:20,281,422...20,326,361
JBrowse link
G CLDN18 claudin 18 ISO (MGI:MGI:5489769|PMID:22437732) MGI PMID:22437732 MGI:MGI:5489769 NCBI chr 3:135,037,555...135,061,105
Ensembl chr 3:142,478,031...142,512,548
JBrowse link
G CLMP CXADR like membrane protein ISO (PMID:22155368) UniProtKB PMID:22155368 NCBI chr11:117,902,792...118,023,936
Ensembl chr11:121,824,398...121,942,055
JBrowse link
G COBL cordon-bleu WH2 repeat protein ISO (PMID:7586755) BHF-UCL PMID:7586755 NCBI chr 7:51,652,318...51,952,256
Ensembl chr 7:51,895,807...52,097,841
JBrowse link
G COL3A1 collagen type III alpha 1 chain ISO (MGI:MGI:86656|PMID:9050868) MGI PMID:9050868 MGI:MGI:86656 NCBI chr2B:76,285,115...76,322,703
Ensembl chr2B:194,204,613...194,242,956
JBrowse link
G CYP1A1 cytochrome P450 family 1 subfamily A member 1 ISO RGD PMID:12162855 RGD:727721 NCBI chr15:53,664,968...53,672,277
Ensembl chr15:73,284,566...73,290,636
JBrowse link
G DCHS1 dachsous cadherin-related 1 ISO (MGI:MGI:4939936|PMID:21303848) MGI PMID:21303848 MGI:MGI:4939936 NCBI chr11:6,753,383...6,787,896
Ensembl chr11:6,436,536...6,456,352
JBrowse link
G DICER1 dicer 1, ribonuclease III ISO (MGI:MGI:4946569|PMID:21307095) MGI PMID:21307095 MGI:MGI:4946569 NCBI chr14:75,709,029...75,780,779
Ensembl chr14:95,036,385...95,107,940
JBrowse link
G EP300 E1A binding protein p300 ISO RGD PMID:17916272 RGD:2312267 NCBI chr22:21,986,467...22,076,921
Ensembl chr22:40,079,503...40,168,604
JBrowse link
G FAT4 FAT atypical cadherin 4 ISO (MGI:MGI:4939936|PMID:21303848) MGI PMID:21303848 MGI:MGI:4939936 NCBI chr 4:117,494,842...117,674,382
Ensembl chr 4:128,637,516...128,814,407
JBrowse link
G FGF10 fibroblast growth factor 10 ISO (MGI:MGI:3052435|PMID:15234214) MGI PMID:15234214 MGI:MGI:3052435 NCBI chr 5:65,979,443...66,069,314
Ensembl chr 5:71,028,187...71,111,706
JBrowse link
G FGFR2 fibroblast growth factor receptor 2 ISO (MGI:MGI:3052435|PMID:15234214) MGI PMID:15234214 MGI:MGI:3052435 NCBI chr10:118,055,854...118,175,440
Ensembl chr10:121,469,735...121,588,815
JBrowse link
G FOXF1 forkhead box F1 ISO (PMID:19500772) DFLAT PMID:19500772 NCBI chr16:67,183,416...67,188,211
Ensembl chr16:86,516,119...86,519,949
JBrowse link
G HRH2 histamine receptor H2 ISO (MGI:MGI:3606849|PMID:15476751)
(MGI:MGI:1860000|PMID:10862789)
MGI PMID:10862789, PMID:15476751 MGI:MGI:1860000, MGI:MGI:3606849 NCBI chr 5:171,004,893...171,057,539
Ensembl chr 5:177,928,039...177,931,566
JBrowse link
G KIT KIT proto-oncogene, receptor tyrosine kinase ISO (MGI:MGI:3040777|PMID:15067126) UniProtKB PMID:15067126 MGI:MGI:3040777 NCBI chr 4:69,199,543...69,282,323
Ensembl chr 4:75,761,946...75,844,473
JBrowse link
G LGR4 leucine rich repeat containing G protein-coupled receptor 4 ISO (MGI:MGI:5581372|PMID:24680895) MGI PMID:24680895 MGI:MGI:5581372 NCBI chr11:27,330,279...27,437,201
Ensembl chr11:27,229,963...27,291,571
JBrowse link
G LOC100972297 polycystin-1 ISO (PMID:11891195) UniProtKB PMID:11891195 NCBI chr16:604,927...1,697,831 JBrowse link
G MIXL1 Mix paired-like homeobox ISO (MGI:MGI:2181739|PMID:12117810) MGI PMID:12117810 MGI:MGI:2181739 NCBI chr 1:201,682,488...201,686,358 JBrowse link
G MUC4 mucin 4, cell surface associated ISO RGD PMID:15389518 RGD:2303738 NCBI chr 3:193,050,895...193,114,931 JBrowse link
G MYOCD myocardin ISO (MGI:MGI:4941650|PMID:21357509) MGI PMID:21357509 MGI:MGI:4941650 NCBI chr17:38,880,120...38,983,246
Ensembl chr17:43,584,259...43,681,659
JBrowse link
G NAT2 N-acetyltransferase 2 ISO RGD PMID:18799802 RGD:2303764 NCBI chr 8:17,606,445...17,623,397
Ensembl chr 8:14,575,455...14,576,327
JBrowse link
G NKX2-2 NK2 homeobox 2 ISO (MGI:MGI:3835247|PMID:18987169) MGI PMID:18987169 MGI:MGI:3835247 NCBI chr20:21,468,872...21,480,627
Ensembl chr20:21,429,401...21,432,492
JBrowse link
G NKX2-3 NK2 homeobox 3 ISO (MGI:MGI:1334782|PMID:10207146)
(MGI:MGI:1888604|PMID:10926756)
MGI PMID:10207146, PMID:10926756 MGI:MGI:1334782, MGI:MGI:1888604 NCBI chr10:96,146,636...96,150,238 JBrowse link
G NKX2-6 NK2 homeobox 6 ISO (PMID:9545560) BHF-UCL PMID:9545560 NCBI chr 8:22,949,843...22,955,391
Ensembl chr 8:19,884,480...19,888,643
JBrowse link
G NR1H4 nuclear receptor subfamily 1 group H member 4 ISO RGD PMID:11984532 RGD:1625207 NCBI chr12:98,052,778...98,144,085
Ensembl chr12:101,457,885...101,548,058
JBrowse link
G NTS neurotensin ISO RGD PMID:8571204 RGD:9743850 NCBI chr12:83,402,313...83,410,356
Ensembl chr12:86,640,720...86,648,745
JBrowse link
G OXTR oxytocin receptor ISO RGD PMID:19003903 RGD:2303961 NCBI chr 3:8,701,344...8,721,706 JBrowse link
G PDGFA platelet derived growth factor subunit A ISO (MGI:MGI:1860627|PMID:10903171)
(MGI:MGI:5543868|PMID:23938297)
UniProtKB
MGI
PMID:10903171, PMID:23938297 MGI:MGI:1860627, MGI:MGI:5543868 NCBI chr 7:648,722...672,023 JBrowse link
G PDGFC platelet derived growth factor C ISO (MGI:MGI:5543868|PMID:23938297) MGI PMID:23938297 MGI:MGI:5543868 NCBI chr 4:149,105,330...149,317,254
Ensembl chr 4:160,922,827...161,131,960
JBrowse link
G PDX1 pancreatic and duodenal homeobox 1 ISO (MGI:MGI:4355651|PMID:19619492) MGI PMID:19619492 MGI:MGI:4355651 NCBI chr13:9,199,572...9,206,202 JBrowse link
G RB1 RB transcriptional corepressor 1 ISO (MGI:MGI:3703460|PMID:17257418) MGI PMID:17257418 MGI:MGI:3703460 NCBI chr13:29,453,872...29,624,665
Ensembl chr13:48,155,795...48,324,575
JBrowse link
G SLC4A2 solute carrier family 4 member 2 ISO RGD PMID:8770049 RGD:9999233 NCBI chr 7:142,646,413...142,663,376
Ensembl chr 7:154,799,256...154,815,919
JBrowse link
G SMO smoothened, frizzled class receptor ISO (MGI:MGI:4355651|PMID:19619492) MGI PMID:19619492 MGI:MGI:4355651 NCBI chr 7:121,143,968...121,168,873
Ensembl chr 7:133,668,304...133,693,048
JBrowse link
G TGFB1 transforming growth factor beta 1 ISO RGD PMID:12815632 RGD:2302031 NCBI chr19:38,324,009...38,347,003
Ensembl chr19:46,831,659...46,852,973
JBrowse link
G TGFB2 transforming growth factor beta 2 ISO RGD PMID:12815632 RGD:2302031 NCBI chr 1:193,907,398...194,005,800
Ensembl chr 1:198,758,751...198,859,041
JBrowse link
G TGFB3 transforming growth factor beta 3 ISO RGD PMID:12815632 RGD:2302031 NCBI chr14:56,516,697...56,542,097
Ensembl chr14:75,359,505...75,382,412
JBrowse link
G TGFBR1 transforming growth factor beta receptor 1 ISO RGD PMID:12815632 RGD:2302031 NCBI chr 9:70,195,007...70,243,514
Ensembl chr 9:98,332,739...98,362,748
JBrowse link
G TGFBR2 transforming growth factor beta receptor 2 ISO RGD PMID:12815632 RGD:2302031 NCBI chr 3:30,536,187...30,623,653
Ensembl chr 3:30,854,460...30,938,856
JBrowse link
G THRA thyroid hormone receptor alpha ISO RGD PMID:17496154 RGD:2314319 NCBI chr17:17,196,459...17,226,263 JBrowse link
G TK1 thymidine kinase 1 ISO RGD PMID:6701043 RGD:2317231 NCBI chr17:72,251,416...72,265,308
Ensembl chr17:77,803,749...77,816,747
JBrowse link
cloaca development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AHI1 Abelson helper integration site 1 ISO (MGI:MGI:5306539|PMID:21959375) UniProtKB PMID:21959375 MGI:MGI:5306539 NCBI chr 6:133,055,026...133,273,591
Ensembl chr 6:137,156,237...137,361,232
JBrowse link
cloacal septation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMP4 bone morphogenetic protein 4 ISO (PMID:17442697) UniProtKB PMID:17442697 NCBI chr14:34,542,132...34,549,286
Ensembl chr14:52,821,872...52,828,752
JBrowse link
G TP63 tumor protein p63 ISO (MGI:MGI:2387879|PMID:12368184) MGI PMID:12368184 MGI:MGI:2387879 NCBI chr 3:186,651,879...186,918,300
Ensembl chr 3:195,199,167...195,474,104
JBrowse link
G WNT11 Wnt family member 11 ISO (PMID:9757009) UniProtKB PMID:9757009 NCBI chr11:71,239,781...71,263,915
Ensembl chr11:74,540,169...74,560,024
JBrowse link
determination of digestive tract left/right asymmetry term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CCDC103 coiled-coil domain containing 103 ISO (PMID:22581229) BHF-UCL PMID:22581229 NCBI chr17:12,416,623...12,423,251
Ensembl chr17:12,589,984...12,595,664
JBrowse link
G CCDC39 coiled-coil domain containing 39 ISO (PMID:22693285) BHF-UCL PMID:22693285 NCBI chr 3:177,640,127...177,705,885
Ensembl chr 3:185,813,245...185,878,362
JBrowse link
G CCDC40 coiled-coil domain containing 40 ISO (PMID:22693285) BHF-UCL PMID:22693285 NCBI chr17:74,120,483...74,187,323
Ensembl chr17:79,656,287...79,722,565
JBrowse link
G DNAAF1 dynein axonemal assembly factor 1 ISO (PMID:19944405) BHF-UCL PMID:19944405 NCBI chr16:64,810,498...64,843,705 JBrowse link
G MEGF8 multiple EGF like domains 8 ISO (MGI:MGI:3839019|PMID:18043505) MGI PMID:18043505 MGI:MGI:3839019 NCBI chr19:39,213,339...39,265,391
Ensembl chr19:47,805,307...47,858,636
JBrowse link
G ZIC3 Zic family member 3 ISO (PMID:9354794) BHF-UCL PMID:9354794 NCBI chr  X:126,691,534...126,705,788
Ensembl chr  X:136,954,024...136,967,819
JBrowse link
determination of intestine left/right asymmetry term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NPHP3 nephrocystin 3 ISO (PMID:20007846) BHF-UCL PMID:20007846 NCBI chr 3:129,753,399...129,795,300 JBrowse link
determination of stomach left/right asymmetry term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NPHP3 nephrocystin 3 ISO (PMID:18371931) BHF-UCL PMID:18371931 NCBI chr 3:129,753,399...129,795,300 JBrowse link
digestive tract mesoderm development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SHH sonic hedgehog signaling molecule ISO RGD PMID:9368764 RGD:2306312 NCBI chr 7:147,400,112...147,414,036
Ensembl chr 7:159,114,666...159,126,651
JBrowse link
digestive tract morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGR2 anterior gradient 2, protein disulphide isomerase family member ISO (MGI:MGI:5634869|PMID:25666625) UniProtKB PMID:25666625 MGI:MGI:5634869 NCBI chr 7:17,446,275...17,489,802
Ensembl chr 7:16,773,281...16,785,879
JBrowse link
G BCL2 BCL2 apoptosis regulator ISO (MGI:MGI:70264|PMID:7812968) MGI PMID:7812968 MGI:MGI:70264 NCBI chr18:56,481,212...56,679,012
Ensembl chr18:59,802,443...59,992,100
JBrowse link
G CFC1B cripto, FRL-1, cryptic family 1B ISO (MGI:MGI:1346729|PMID:10521397) MGI PMID:10521397 MGI:MGI:1346729 NCBI chr2B:29,354,004...29,362,161 JBrowse link
G EGFR epidermal growth factor receptor ISO (MGI:MGI:74263|PMID:7618084) MGI PMID:7618084 MGI:MGI:74263 NCBI chr 7:55,614,042...55,807,285
Ensembl chr 7:56,046,296...56,111,615
JBrowse link
G EPHB3 EPH receptor B3 ISO (MGI:MGI:2388849|PMID:12408869) UniProtKB PMID:12408869 MGI:MGI:2388849 NCBI chr 3:181,604,188...181,624,744
Ensembl chr 3:190,089,522...190,104,905
JBrowse link
G FGFR3 fibroblast growth factor receptor 3 ISO (MGI:MGI:4352984|PMID:19407216) MGI PMID:19407216 MGI:MGI:4352984 NCBI chr 4:1,933,172...1,948,742 JBrowse link
G HIF1A hypoxia inducible factor 1 subunit alpha ISO (MGI:MGI:4830408|PMID:20808783) MGI PMID:20808783 MGI:MGI:4830408 NCBI chr14:42,295,691...42,348,478
Ensembl chr14:60,552,374...60,604,885
JBrowse link
G IL18 interleukin 18 ISO RGD PMID:21088234 RGD:4889157 NCBI chr11:107,024,376...107,045,194
Ensembl chr11:110,867,586...110,888,371
JBrowse link
G NODAL nodal growth differentiation factor ISO (MGI:MGI:2155575|PMID:11311163) MGI PMID:11311163 MGI:MGI:2155575 NCBI chr10:66,906,866...66,916,938
Ensembl chr10:69,433,959...69,443,972
JBrowse link
G PERCC1 proline and glutamate rich with coiled coil 1 ISO (MGI:MGI:6368375|PMID:31217582) UniProt PMID:31217582 MGI:MGI:6368375 NCBI chr16:47,713...54,208 JBrowse link
G SFRP1 secreted frizzled related protein 1 ISO (MGI:MGI:3839161|PMID:19300477) MGI PMID:19300477 MGI:MGI:3839161 NCBI chr 8:40,507,027...40,555,053 JBrowse link
G SFRP2 secreted frizzled related protein 2 ISO (MGI:MGI:3839161|PMID:19300477) MGI PMID:19300477 MGI:MGI:3839161 NCBI chr 4:146,123,075...146,131,543
Ensembl chr 4:157,944,733...157,953,258
JBrowse link
G SFRP5 secreted frizzled related protein 5 ISO (MGI:MGI:3839161|PMID:19300477) MGI PMID:19300477 MGI:MGI:3839161 NCBI chr10:94,383,269...94,389,053
Ensembl chr10:97,877,790...97,882,850
JBrowse link
G SHH sonic hedgehog signaling molecule ISO (MGI:MGI:1277744|PMID:9731532) MGI PMID:9731532 MGI:MGI:1277744 NCBI chr 7:147,400,112...147,414,036
Ensembl chr 7:159,114,666...159,126,651
JBrowse link
G SOX10 SRY-box transcription factor 10 ISO (MGI:MGI:3699432|PMID:15843399), (MGI:MGI:56157|PMID:6512238) MGI PMID:6512238, PMID:15843399 MGI:MGI:3699432, MGI:MGI:56157 NCBI chr22:18,885,679...18,897,927
Ensembl chr22:36,713,310...36,723,439
JBrowse link
G STRA6 signaling receptor and transporter of retinol STRA6 ISO (PMID:17273977) DFLAT PMID:17273977 NCBI chr15:53,117,891...53,150,790
Ensembl chr15:72,741,482...72,770,876
JBrowse link
G STX2 syntaxin 2 ISO RGD PMID:12464668 RGD:1298909 NCBI chr12:128,416,793...128,464,452
Ensembl chr12:132,614,793...132,650,559
JBrowse link
G TP73 tumor protein p73 ISO (MGI:MGI:1354064|PMID:10716451) MGI PMID:10716451 MGI:MGI:1354064 NCBI chr 1:2,323,399...2,405,295
Ensembl chr 1:3,476,064...3,529,206
JBrowse link
G VANGL2 VANGL planar cell polarity protein 2 ISO (MGI:MGI:3839161|PMID:19300477) MGI PMID:19300477 MGI:MGI:3839161 NCBI chr 1:135,754,897...135,783,031
Ensembl chr 1:139,683,745...139,704,281
JBrowse link
G WNT5A Wnt family member 5A ISO (MGI:MGI:3839161|PMID:19300477) MGI PMID:19300477 MGI:MGI:3839161 NCBI chr 3:55,396,279...55,418,579
Ensembl chr 3:56,621,380...56,638,051
JBrowse link
embryonic digestive tract development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ADA adenosine deaminase ISO (MGI:MGI:74163|PMID:7670465) MGI PMID:7670465 MGI:MGI:74163 NCBI chr20:40,950,238...40,982,481
Ensembl chr20:42,044,613...42,076,868
JBrowse link
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 ISO (MGI:MGI:3663954|PMID:16806149) MGI PMID:16806149 MGI:MGI:3663954 NCBI chr15:36,925,443...37,038,288
Ensembl chr15:55,237,101...55,557,168
JBrowse link
G CXCL8 C-X-C motif chemokine ligand 8 ISO (PMID:20875417) DFLAT PMID:20875417 NCBI chr 4:50,452,857...50,456,015
Ensembl chr 4:56,286,708...56,288,083
JBrowse link
G FGF10 fibroblast growth factor 10 ISO (MGI:MGI:3611702|PMID:16308329) MGI PMID:16308329 MGI:MGI:3611702 NCBI chr 5:65,979,443...66,069,314
Ensembl chr 5:71,028,187...71,111,706
JBrowse link
G FGF9 fibroblast growth factor 9 ISO (MGI:MGI:3611702|PMID:16308329) MGI PMID:16308329 MGI:MGI:3611702 NCBI chr13:2,967,713...3,000,554
Ensembl chr13:21,273,333...21,307,198
JBrowse link
G FOXF1 forkhead box F1 ISO (MGI:MGI:3617131|PMID:16439479) MGI PMID:16439479 MGI:MGI:3617131 NCBI chr16:67,183,416...67,188,211
Ensembl chr16:86,516,119...86,519,949
JBrowse link
G FOXF2 forkhead box F2 ISO (MGI:MGI:3617131|PMID:16439479) MGI PMID:16439479 MGI:MGI:3617131 NCBI chr 6:1,209,899...1,215,970 JBrowse link
G GLI2 GLI family zinc finger 2 ISO (MGI:MGI:1353327|PMID:10693670) MGI PMID:10693670 MGI:MGI:1353327 NCBI chr2B:7,665,403...7,922,840
Ensembl chr2B:121,303,831...121,497,442
JBrowse link
G GLI3 GLI family zinc finger 3 ISO (MGI:MGI:1353327|PMID:10693670) MGI PMID:10693670 MGI:MGI:1353327 NCBI chr 7:42,004,965...42,280,772
Ensembl chr 7:42,056,565...42,322,865
JBrowse link
G MYB MYB proto-oncogene, transcription factor ISO (MGI:MGI:1346939|PMID:10523863) MGI PMID:10523863 MGI:MGI:1346939 NCBI chr 6:132,952,728...132,990,560
Ensembl chr 6:137,048,812...137,086,194
JBrowse link
G PCSK5 proprotein convertase subtilisin/kexin type 5 ISO (MGI:MGI:3795695|PMID:18519639)
(PMID:18519639)
BHF-UCL PMID:18519639 MGI:MGI:3795695 NCBI chr 9:48,480,607...48,943,331
Ensembl chr 9:74,745,761...75,220,502
JBrowse link
G PKDCC protein kinase domain containing, cytoplasmic ISO (MGI:MGI:3813934|PMID:19097194) UniProtKB PMID:19097194 MGI:MGI:3813934 NCBI chr2A:42,146,153...42,156,652 JBrowse link
G RARB retinoic acid receptor beta ISO (PMID:19443732) DFLAT PMID:19443732 NCBI chr 3:24,729,220...25,499,187
Ensembl chr 3:25,660,922...25,833,297
JBrowse link
G RARRES2 retinoic acid receptor responder 2 ISO (PMID:19443732) DFLAT PMID:19443732 NCBI chr 7:141,953,600...141,956,991
Ensembl chr 7:154,106,275...154,109,635
JBrowse link
G SALL1 spalt like transcription factor 1 ISO (PMID:18280297) UniProtKB PMID:18280297 NCBI chr16:31,396,399...31,412,753
Ensembl chr16:50,274,090...50,284,819
JBrowse link
G SCT secretin ISO RGD PMID:1711228 RGD:729899 NCBI chr11:632,073...634,296 JBrowse link
G STRA6 signaling receptor and transporter of retinol STRA6 ISO (PMID:17273977) DFLAT PMID:17273977 NCBI chr15:53,117,891...53,150,790
Ensembl chr15:72,741,482...72,770,876
JBrowse link
G TGFB2 transforming growth factor beta 2 ISO (PMID:20875417) DFLAT PMID:20875417 NCBI chr 1:193,907,398...194,005,800
Ensembl chr 1:198,758,751...198,859,041
JBrowse link
G TNF tumor necrosis factor ISO (PMID:20875417) DFLAT PMID:20875417 NCBI chr 6:31,236,650...31,239,423
Ensembl chr 6:32,126,618...32,129,381
JBrowse link
embryonic digestive tract morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FGF10 fibroblast growth factor 10 ISO (MGI:MGI:3722952|PMID:16618415)
(MGI:MGI:3040447|PMID:15017552)
MGI PMID:15017552, PMID:16618415 MGI:MGI:3040447, MGI:MGI:3722952 NCBI chr 5:65,979,443...66,069,314
Ensembl chr 5:71,028,187...71,111,706
JBrowse link
G FGFR2 fibroblast growth factor receptor 2 ISO (MGI:MGI:5285062|PMID:21550054)
(MGI:MGI:3722952|PMID:16618415), (MGI:MGI:5317412|PMID:21492869)
MGI PMID:16618415, PMID:21492869, PMID:21550054 MGI:MGI:3722952, MGI:MGI:5285062, MGI:MGI:5317412 NCBI chr10:118,055,854...118,175,440
Ensembl chr10:121,469,735...121,588,815
JBrowse link
G FOXF1 forkhead box F1 ISO (PMID:19500772) DFLAT PMID:19500772 NCBI chr16:67,183,416...67,188,211
Ensembl chr16:86,516,119...86,519,949
JBrowse link
G GATA4 GATA binding protein 4 ISO (MGI:MGI:3590399|PMID:16127717) MGI PMID:16127717 MGI:MGI:3590399 NCBI chr 8:7,442,921...7,526,731 JBrowse link
G GLI3 GLI family zinc finger 3 ISO (MGI:MGI:3608164|PMID:16247775) MGI PMID:16247775 MGI:MGI:3608164 NCBI chr 7:42,004,965...42,280,772
Ensembl chr 7:42,056,565...42,322,865
JBrowse link
G HLX H2.0 like homeobox ISO (MGI:MGI:79044|PMID:8557196) MGI PMID:8557196 MGI:MGI:79044 NCBI chr 1:196,465,704...196,471,803
Ensembl chr 1:201,500,470...201,506,222
JBrowse link
G HNF1B HNF1 homeobox B ISO (MGI:MGI:3807614|PMID:18635606) MGI PMID:18635606 MGI:MGI:3807614 NCBI chr17:19,333,485...19,392,147
Ensembl chr17:19,633,424...19,691,863
JBrowse link
G ID2 inhibitor of DNA binding 2 ISO (MGI:MGI:4399020|PMID:16888283) UniProtKB PMID:16888283 MGI:MGI:4399020 NCBI chr2A:8,681,592...8,684,014
Ensembl chr2A:8,847,776...8,850,720
JBrowse link
G IHH Indian hedgehog signaling molecule ISO (MGI:MGI:1858523|PMID:10821773) MGI PMID:10821773 MGI:MGI:1858523 NCBI chr2B:106,312,472...106,319,124
Ensembl chr2B:224,906,271...224,911,506
JBrowse link
G NIPBL NIPBL cohesin loading factor ISO (PMID:19242925), (PMID:8291537) BHF-UCL PMID:8291537, PMID:19242925 NCBI chr 5:73,306,527...73,491,367
Ensembl chr 5:78,585,649...78,698,184
JBrowse link
G OVOL2 ovo like zinc finger 2 ISO (MGI:MGI:3618450|PMID:16423343) MGI PMID:16423343 MGI:MGI:3618450 NCBI chr20:17,983,277...18,019,441
Ensembl chr20:17,962,123...17,994,486
JBrowse link
G PDGFRA platelet derived growth factor receptor alpha ISO (MGI:MGI:1860627|PMID:10903171) UniProtKB PMID:10903171 MGI:MGI:1860627 NCBI chr 4:69,639,081...69,709,870
Ensembl chr 4:76,199,382...76,271,097
JBrowse link
G PITX2 paired like homeodomain 2 ISO (MGI:MGI:5285062|PMID:21550054) MGI PMID:21550054 MGI:MGI:5285062 NCBI chr 4:103,112,624...103,137,356 JBrowse link
G SHH sonic hedgehog signaling molecule ISO (MGI:MGI:1858523|PMID:10821773) MGI PMID:10821773 MGI:MGI:1858523 NCBI chr 7:147,400,112...147,414,036
Ensembl chr 7:159,114,666...159,126,651
JBrowse link
G SHOX2 short stature homeobox 2 ISO (MGI:MGI:3604918|PMID:16141225) MGI PMID:16141225 MGI:MGI:3604918 NCBI chr 3:155,138,969...155,149,619
Ensembl chr 3:163,190,284...163,199,239
JBrowse link
G SIX2 SIX homeobox 2 ISO (MGI:MGI:4365896|PMID:19660448) UniProtKB PMID:19660448 MGI:MGI:4365896 NCBI chr2A:45,109,414...45,113,887
Ensembl chr2A:46,039,582...46,044,035
JBrowse link
G SOX11 SRY-box transcription factor 11 ISO (MGI:MGI:3052265|PMID:15254231) UniProtKB PMID:15254231 MGI:MGI:3052265 NCBI chr2A:5,699,738...5,711,210 JBrowse link
G TCF21 transcription factor 21 ISO RGD PMID:11804032 RGD:727206 NCBI chr 6:131,656,582...131,662,983
Ensembl chr 6:135,754,896...135,761,294
JBrowse link
G TCF7 transcription factor 7 ISO (MGI:MGI:3042541|PMID:15057272) MGI PMID:15057272 MGI:MGI:3042541 NCBI chr 5:129,518,134...129,549,972 JBrowse link
G TCF7L2 transcription factor 7 like 2 ISO (MGI:MGI:3042541|PMID:15057272) MGI PMID:15057272 MGI:MGI:3042541 NCBI chr10:109,541,524...109,759,499
Ensembl chr10:112,978,167...113,192,281
JBrowse link
embryonic ectodermal digestive tract development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G VPS52 VPS52 subunit of GARP complex ISO (MGI:MGI:5449815|PMID:23142660) MGI PMID:23142660 MGI:MGI:5449815 NCBI chr 6:32,822,394...32,844,120
Ensembl chr 6:33,936,683...33,958,404
JBrowse link
embryonic ectodermal digestive tract morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FOXF1 forkhead box F1 ISO (PMID:19500772) DFLAT PMID:19500772 NCBI chr16:67,183,416...67,188,211
Ensembl chr16:86,516,119...86,519,949
JBrowse link
embryonic foregut morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ACVR2B activin A receptor type 2B ISO (MGI:MGI:1861876|PMID:10921901) MGI PMID:10921901 MGI:MGI:1861876 NCBI chr 3:38,350,838...38,389,839
Ensembl chr 3:38,633,093...38,662,063
JBrowse link
G CTNNB1 catenin beta 1 ISO (MGI:MGI:3820452|PMID:18692041) MGI PMID:18692041 MGI:MGI:3820452 NCBI chr 3:41,104,940...41,145,934
Ensembl chr 3:41,373,726...41,414,030
JBrowse link
G EPB41L5 erythrocyte membrane protein band 4.1 like 5 ISO (MGI:MGI:3821807|PMID:18794329) MGI PMID:18794329 MGI:MGI:3821807 NCBI chr2B:6,945,289...7,111,595
Ensembl chr2B:120,521,145...120,687,209
JBrowse link
G FOXF1 forkhead box F1 ISO (MGI:MGI:2135612|PMID:11493558) MGI PMID:11493558 MGI:MGI:2135612 NCBI chr16:67,183,416...67,188,211
Ensembl chr16:86,516,119...86,519,949
JBrowse link
G FOXP4 forkhead box P4 ISO (MGI:MGI:3054576|PMID:15361625) MGI PMID:15361625 MGI:MGI:3054576 NCBI chr 6:41,133,751...41,189,709
Ensembl chr 6:42,459,420...42,496,205
JBrowse link
G GATA4 GATA binding protein 4 ISO (MGI:MGI:87489|PMID:9136933)
(MGI:MGI:87488|PMID:9136932)
MGI PMID:9136932, PMID:9136933 MGI:MGI:87488, MGI:MGI:87489 NCBI chr 8:7,442,921...7,526,731 JBrowse link
G NCKAP1 NCK associated protein 1 ISO (MGI:MGI:3701029|PMID:16831833) MGI PMID:16831833 MGI:MGI:3701029 NCBI chr2B:70,193,950...70,308,442
Ensembl chr2B:188,003,235...188,116,710
JBrowse link
G SHH sonic hedgehog signaling molecule ISO (MGI:MGI:1277744|PMID:9731532) MGI PMID:9731532 MGI:MGI:1277744 NCBI chr 7:147,400,112...147,414,036
Ensembl chr 7:159,114,666...159,126,651
JBrowse link
G SMAD2 SMAD family member 2 ISO (MGI:MGI:3618021|PMID:15183723) MGI PMID:15183723 MGI:MGI:3618021 NCBI chr18:41,213,001...41,309,902
Ensembl chr18:44,580,905...44,668,530
JBrowse link
G SMAD3 SMAD family member 3 ISO (MGI:MGI:3618021|PMID:15183723) MGI PMID:15183723 MGI:MGI:3618021 NCBI chr15:46,013,764...46,143,126
Ensembl chr15:64,284,949...64,414,185
JBrowse link
G SOX17 SRY-box transcription factor 17 ISO (MGI:MGI:4946573|PMID:21305474)
(MGI:MGI:4355651|PMID:19619492)
(MGI:MGI:4415813|PMID:18462699)
BHF-UCL
MGI
PMID:18462699, PMID:19619492, PMID:21305474 MGI:MGI:4355651, MGI:MGI:4415813, MGI:MGI:4946573 NCBI chr 8:50,883,088...50,885,542
Ensembl chr 8:48,257,287...48,259,808
JBrowse link
embryonic hindgut morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DACT1 dishevelled binding antagonist of beta catenin 1 ISO (MGI:MGI:4457465|PMID:20145239) UniProtKB PMID:20145239 MGI:MGI:4457465 NCBI chr14:39,231,910...39,242,353
Ensembl chr14:57,499,906...57,510,019
JBrowse link
G HOXA13 homeobox A13 ISO RGD PMID:17161201 RGD:1599527 NCBI chr 7:27,838,656...27,844,562 JBrowse link
G HOXD13 homeobox D13 ISO RGD PMID:17161201 RGD:1599527 NCBI chr2B:63,372,517...63,375,731 JBrowse link
G TCF7 transcription factor 7 ISO (MGI:MGI:3042541|PMID:15057272) MGI PMID:15057272 MGI:MGI:3042541 NCBI chr 5:129,518,134...129,549,972 JBrowse link
G TCF7L2 transcription factor 7 like 2 ISO (MGI:MGI:3042541|PMID:15057272) MGI PMID:15057272 MGI:MGI:3042541 NCBI chr10:109,541,524...109,759,499
Ensembl chr10:112,978,167...113,192,281
JBrowse link
endodermal digestive tract morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FGFR2 fibroblast growth factor receptor 2 ISO (MGI:MGI:5285062|PMID:21550054) MGI PMID:21550054 MGI:MGI:5285062 NCBI chr10:118,055,854...118,175,440
Ensembl chr10:121,469,735...121,588,815
JBrowse link
G ID2 inhibitor of DNA binding 2 ISO (PMID:16888283) UniProtKB PMID:16888283 NCBI chr2A:8,681,592...8,684,014
Ensembl chr2A:8,847,776...8,850,720
JBrowse link
G PITX2 paired like homeodomain 2 ISO (MGI:MGI:5285062|PMID:21550054) MGI PMID:21550054 MGI:MGI:5285062 NCBI chr 4:103,112,624...103,137,356 JBrowse link
G SOX17 SRY-box transcription factor 17 ISO (MGI:MGI:4946573|PMID:21305474) BHF-UCL PMID:21305474 MGI:MGI:4946573 NCBI chr 8:50,883,088...50,885,542
Ensembl chr 8:48,257,287...48,259,808
JBrowse link
enteric smooth muscle cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EDNRB endothelin receptor type B ISO (MGI:MGI:1330409|PMID:10021336) BHF-UCL PMID:10021336 MGI:MGI:1330409 NCBI chr13:59,112,349...59,136,615
Ensembl chr13:78,153,020...78,177,286
JBrowse link
foregut morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NOTCH1 notch receptor 1 ISO (MGI:MGI:3603059|PMID:16107537) MGI PMID:16107537 MGI:MGI:3603059 NCBI chr 9:107,568,670...107,621,032
Ensembl chr 9:136,544,639...136,598,740
JBrowse link
hindgut development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G IFT172 intraflagellar transport 172 ISO (MGI:MGI:5285455|PMID:21653639) MGI PMID:21653639 MGI:MGI:5285455 NCBI chr2A:27,448,139...27,492,302
Ensembl chr2A:27,536,534...27,580,406
JBrowse link
hindgut morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G GLI2 GLI family zinc finger 2 ISO (MGI:MGI:2148409|PMID:11485934) MGI PMID:11485934 MGI:MGI:2148409 NCBI chr2B:7,665,403...7,922,840
Ensembl chr2B:121,303,831...121,497,442
JBrowse link
G GLI3 GLI family zinc finger 3 ISO (MGI:MGI:2148409|PMID:11485934) MGI PMID:11485934 MGI:MGI:2148409 NCBI chr 7:42,004,965...42,280,772
Ensembl chr 7:42,056,565...42,322,865
JBrowse link
G SHH sonic hedgehog signaling molecule ISO (MGI:MGI:2148409|PMID:11485934) MGI PMID:11485934 MGI:MGI:2148409 NCBI chr 7:147,400,112...147,414,036
Ensembl chr 7:159,114,666...159,126,651
JBrowse link
G WNT5A Wnt family member 5A ISO (MGI:MGI:3822053|PMID:18804104) MGI PMID:18804104 MGI:MGI:3822053 NCBI chr 3:55,396,279...55,418,579
Ensembl chr 3:56,621,380...56,638,051
JBrowse link
intestinal epithelial cell development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G C1GALT1 core 1 synthase, glycoprotein-N-acetylgalactosamine 3-beta-galactosyltransferase 1 ISO (MGI:MGI:5002772|PMID:21383503) MGI PMID:21383503 MGI:MGI:5002772 NCBI chr 7:7,881,615...8,002,349
Ensembl chr 7:7,314,423...7,328,760
JBrowse link
G CDH1 cadherin 1 ISO (MGI:MGI:5449145|PMID:22766025) MGI PMID:22766025 MGI:MGI:5449145 NCBI chr16:49,108,745...49,206,347
Ensembl chr16:68,502,584...68,596,488
JBrowse link
G DICER1 dicer 1, ribonuclease III ISO (MGI:MGI:4946569|PMID:21307095) MGI PMID:21307095 MGI:MGI:4946569 NCBI chr14:75,709,029...75,780,779
Ensembl chr14:95,036,385...95,107,940
JBrowse link
G GSDMC gasdermin C ISO (PMID:17350798) UniProtKB PMID:17350798 NCBI chr 8:126,384,575...126,423,505
Ensembl chr 8:129,118,445...129,147,808
JBrowse link
G IL6ST interleukin 6 signal transducer ISO (PMID:25731159)
(MGI:MGI:5629863|PMID:25731159)
UniProt PMID:25731159 MGI:MGI:5629863 NCBI chr 5:58,023,704...58,081,895
Ensembl chr 5:59,669,606...59,708,817
JBrowse link
G KLF5 Kruppel like factor 5 ISO (MGI:MGI:5471906|PMID:23266329) MGI PMID:23266329 MGI:MGI:5471906 NCBI chr13:54,287,578...54,310,216 JBrowse link
G NKX3-2 NK3 homeobox 2 ISO (MGI:MGI:4946569|PMID:21307095) MGI PMID:21307095 MGI:MGI:4946569 NCBI chr 4:7,958,218...7,961,844
Ensembl chr 4:13,258,949...13,262,458
JBrowse link
G PRDM1 PR/SET domain 1 ISO (MGI:MGI:5014435|PMID:21670299) MGI PMID:21670299 MGI:MGI:5014435 NCBI chr 6:103,899,410...103,923,389
Ensembl chr 6:107,773,229...107,796,815
JBrowse link
G SPDEF SAM pointed domain containing ETS transcription factor ISO (MGI:MGI:4410300|PMID:19549527) MGI PMID:19549527 MGI:MGI:4410300 NCBI chr 6:34,102,610...34,140,800
Ensembl chr 6:35,202,983...35,209,639
JBrowse link
G SRC SRC proto-oncogene, non-receptor tyrosine kinase ISO (PMID:25731159)
(MGI:MGI:5629863|PMID:25731159)
UniProt PMID:25731159 MGI:MGI:5629863 NCBI chr20:33,667,614...33,727,126
Ensembl chr20:34,822,271...34,839,634
JBrowse link
G TIGAR TP53 induced glycolysis regulatory phosphatase ISO (MGI:MGI:5498602|PMID:23726973) MGI PMID:23726973 MGI:MGI:5498602 NCBI chr12:4,429,945...4,462,142
Ensembl chr12:4,353,272...4,385,380
JBrowse link
G YAP1 Yes1 associated transcriptional regulator ISO (PMID:25731159)
(MGI:MGI:5629863|PMID:25731159)
UniProt PMID:25731159 MGI:MGI:5629863 NCBI chr11:97,061,367...97,186,961
Ensembl chr11:100,552,424...100,681,301
JBrowse link
G YIPF6 Yip1 domain family member 6 ISO (MGI:MGI:5437477|PMID:22802641) MGI PMID:22802641 MGI:MGI:5437477 NCBI chr  X:57,738,236...57,815,002
Ensembl chr  X:67,803,940...67,839,711
JBrowse link
intestinal epithelial cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CBFA2T2 CBFA2/RUNX1 partner transcriptional co-repressor 2 ISO (MGI:MGI:5629454|PMID:25398765) UniProtKB PMID:25398765 MGI:MGI:5629454 NCBI chr20:29,780,902...29,937,398
Ensembl chr20:31,002,486...31,072,929
JBrowse link
G CDX2 caudal type homeobox 2 ISO (MGI:MGI:5301472|PMID:22015720) UniProtKB PMID:22015720 MGI:MGI:5301472 NCBI chr13:9,241,856...9,250,297
Ensembl chr13:27,586,340...27,593,632
JBrowse link
G GATA4 GATA binding protein 4 ISO (PMID:9566909) MGI PMID:9566909 NCBI chr 8:7,442,921...7,526,731 JBrowse link
G GATA6 GATA binding protein 6 ISO (PMID:9566909) MGI PMID:9566909 NCBI chr18:15,411,764...15,444,402 JBrowse link
G PTK6 protein tyrosine kinase 6 ISO (MGI:MGI:3640030|PMID:16782882) UniProtKB PMID:16782882 MGI:MGI:3640030 Ensembl chr20:61,453,386...61,462,951 JBrowse link
G SAV1 salvador family WW domain containing protein 1 ISO (MGI:MGI:3785211|PMID:18369314) MGI PMID:18369314 MGI:MGI:3785211 NCBI chr14:31,223,140...31,257,871
Ensembl chr14:49,525,687...49,560,347
JBrowse link
intestinal epithelial cell maturation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CDKN1A cyclin dependent kinase inhibitor 1A ISO RGD PMID:20466941 RGD:8662316 NCBI chr 6:36,241,405...36,250,032
Ensembl chr 6:37,436,990...37,445,599
JBrowse link
G HIF1A hypoxia inducible factor 1 subunit alpha ISO (MGI:MGI:4830408|PMID:20808783) MGI PMID:20808783 MGI:MGI:4830408 NCBI chr14:42,295,691...42,348,478
Ensembl chr14:60,552,374...60,604,885
JBrowse link
G HOXA5 homeobox A5 ISO (MGI:MGI:1349338|PMID:10564089) MGI PMID:10564089 MGI:MGI:1349338 NCBI chr 7:27,786,040...27,789,339
Ensembl chr 7:27,385,175...27,388,990
JBrowse link
G TYMS thymidylate synthetase ISO RGD PMID:1260861 RGD:2317427 NCBI chr18:13,653,085...13,668,478
Ensembl chr18:17,295,182...17,310,320
JBrowse link
midgut development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ALDH1A1 aldehyde dehydrogenase 1 family member A1 ISO RGD PMID:15964596 RGD:1643113 NCBI chr 9:51,737,305...51,916,648
Ensembl chr 9:71,680,890...71,814,085
JBrowse link
G ALDH1A2 aldehyde dehydrogenase 1 family member A2 ISO RGD PMID:15964596 RGD:1643113 NCBI chr15:36,925,443...37,038,288
Ensembl chr15:55,237,101...55,557,168
JBrowse link
G ARG2 arginase 2 ISO RGD PMID:10050048 RGD:4144052 NCBI chr14:48,197,831...48,231,829
Ensembl chr14:67,075,941...67,109,962
JBrowse link
G ASL argininosuccinate lyase ISO RGD PMID:9544996 RGD:4139911 NCBI chr 7:59,971,529...59,988,722
Ensembl chr 7:73,142,842...73,157,472
JBrowse link
G ASS1 argininosuccinate synthase 1 ISO RGD PMID:9544996 RGD:4139911 NCBI chr 9:101,569,442...101,625,899
Ensembl chr 9:130,219,993...130,276,036
JBrowse link
G CASP1 caspase 1 ISO RGD PMID:12396474 RGD:5130192 NCBI chr11:99,965,964...99,975,640
Ensembl chr11:103,448,497...103,458,149
JBrowse link
G CPS1 carbamoyl-phosphate synthase 1 ISO RGD PMID:9544996 RGD:4139911 NCBI chr2B:97,735,486...97,936,623
Ensembl chr2B:216,136,857...216,337,728
JBrowse link
G CTNNB1 catenin beta 1 ISO RGD PMID:17356920 RGD:2289844 NCBI chr 3:41,104,940...41,145,934
Ensembl chr 3:41,373,726...41,414,030
JBrowse link
G DAB1 DAB adaptor protein 1 ISO RGD PMID:19946030 RGD:2317766 NCBI chr 1:56,279,089...57,529,881
Ensembl chr 1:58,005,136...58,286,708
JBrowse link
G EGFR epidermal growth factor receptor ISO RGD PMID:7926492 RGD:10395256 NCBI chr 7:55,614,042...55,807,285
Ensembl chr 7:56,046,296...56,111,615
JBrowse link
G FOXF1 forkhead box F1 ISO (PMID:19500772) DFLAT PMID:19500772 NCBI chr16:67,183,416...67,188,211
Ensembl chr16:86,516,119...86,519,949
JBrowse link
G HMGCS2 3-hydroxy-3-methylglutaryl-CoA synthase 2 ISO RGD PMID:8620869 RGD:2326125 NCBI chr 1:82,778,489...82,798,987
Ensembl chr 1:117,775,770...117,796,679
JBrowse link
G OTC ornithine carbamoyltransferase ISO RGD PMID:9544996 RGD:4139911 NCBI chr  X:30,796,828...30,868,144
Ensembl chr  X:38,505,232...38,575,819
JBrowse link
G RELN reelin ISO RGD PMID:19946030 RGD:2317766 NCBI chr 7:95,464,285...95,984,813
Ensembl chr 7:108,208,344...108,728,037
JBrowse link
G RXRA retinoid X receptor alpha ISO RGD PMID:15964596 RGD:1643113 NCBI chr 9:105,424,046...105,539,241
Ensembl chr 9:134,082,865...134,144,704
JBrowse link
G SMO smoothened, frizzled class receptor ISO (MGI:MGI:5142377|PMID:11517919) BHF-UCL PMID:11517919 MGI:MGI:5142377 NCBI chr 7:121,143,968...121,168,873
Ensembl chr 7:133,668,304...133,693,048
JBrowse link
G WNT5A Wnt family member 5A ISO (MGI:MGI:3833777|PMID:19100728) MGI PMID:19100728 MGI:MGI:3833777 NCBI chr 3:55,396,279...55,418,579
Ensembl chr 3:56,621,380...56,638,051
JBrowse link
negative regulation of stomach neuroendocrine cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G HES1 hes family bHLH transcription factor 1 ISO (MGI:MGI:3804618|PMID:18173746) MGI PMID:18173746 MGI:MGI:3804618 NCBI chr 3:191,432,513...191,435,387
Ensembl chr 3:201,749,044...201,754,257
JBrowse link
negative regulation of Wnt signaling pathway involved in digestive tract morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G SFRP5 secreted frizzled related protein 5 ISO (PMID:18981481) BHF-UCL PMID:18981481 NCBI chr10:94,383,269...94,389,053
Ensembl chr10:97,877,790...97,882,850
JBrowse link
pharynx development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CRKL CRK like proto-oncogene, adaptor protein ISO (MGI:MGI:6102264|PMID:25565927) MGI PMID:25565927 MGI:MGI:6102264 NCBI chr22:3,141,147...3,177,448
Ensembl chr22:19,632,359...19,668,858
JBrowse link
G FOXE1 forkhead box E1 ISO (PMID:15494458) UniProtKB PMID:15494458 NCBI chr 9:68,943,747...68,947,226 JBrowse link
G TBX2 T-box transcription factor 2 ISO (MGI:MGI:3487212|PMID:15459098) BHF-UCL PMID:15459098 MGI:MGI:3487212 NCBI chr17:55,501,932...55,511,537
Ensembl chr17:60,622,098...60,630,189
JBrowse link
post-embryonic digestive tract morphogenesis term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NKX2-3 NK2 homeobox 3 ISO (MGI:MGI:1888604|PMID:10926756) MGI PMID:10926756 MGI:MGI:1888604 NCBI chr10:96,146,636...96,150,238 JBrowse link
posterior midgut development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EDNRB endothelin receptor type B ISO (MGI:MGI:77408|PMID:8582288) MGI PMID:8582288 MGI:MGI:77408 NCBI chr13:59,112,349...59,136,615
Ensembl chr13:78,153,020...78,177,286
JBrowse link
stomach development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EXT1 exostosin glycosyltransferase 1 ISO (MGI:MGI:6160687|PMID:29700203) MGI PMID:29700203 MGI:MGI:6160687 NCBI chr 8:114,489,325...114,803,763
Ensembl chr 8:117,011,919...117,324,851
JBrowse link
stomach neuroendocrine cell differentiation term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ASCL1 achaete-scute family bHLH transcription factor 1 ISO (MGI:MGI:3804618|PMID:18173746) MGI PMID:18173746 MGI:MGI:3804618 NCBI chr12:100,536,895...100,539,737
Ensembl chr12:103,932,302...103,932,999
JBrowse link
visceral mesoderm-endoderm interaction involved in midgut development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FOXL1 forkhead box L1 ISO (MGI:MGI:893314|PMID:9203584) MGI PMID:9203584 MGI:MGI:893314 NCBI chr16:67,249,157...67,252,278 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12529
    multicellular organismal process 6476
      multicellular organism development 4970
        tube development 1132
          digestive tract development 158
            determination of digestive tract left/right asymmetry + 7
            digestive tract mesoderm development 1
            digestive tract morphogenesis + 57
            ectodermal digestive tract development + 2
            embryonic digestive tract development + 37
            enteric smooth muscle cell differentiation 1
            hindgut development + 10
            intestinal epithelial cell differentiation + 23
            midgut development + 19
            pharynx development + 3
            stomach development + 4
Path 2
Term Annotations click to browse term
  biological_process 12529
    developmental process 5818
      anatomical structure development 5431
        multicellular organism development 4970
          system development 4675
            digestive system development 172
              digestive tract development 158
                determination of digestive tract left/right asymmetry + 7
                digestive tract mesoderm development 1
                digestive tract morphogenesis + 57
                ectodermal digestive tract development + 2
                embryonic digestive tract development + 37
                enteric smooth muscle cell differentiation 1
                hindgut development + 10
                intestinal epithelial cell differentiation + 23
                midgut development + 19
                pharynx development + 3
                stomach development + 4
paths to the root

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RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.