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ONTOLOGY REPORT - ANNOTATIONS

Term:embryonic organ morphogenesis
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Accession:GO:0048562 term browser browse the term
Definition:Morphogenesis, during the embryonic phase, of a tissue or tissues that work together to perform a specific function or functions. Morphogenesis is the process in which anatomical structures are generated and organized. Organs are commonly observed as visibly distinct structures, but may also exist as loosely associated clusters of cells that work together to perform a specific function or functions.

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embryonic organ morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgfr2 fibroblast growth factor receptor 2 ISO MGI:2153818 (MGI:3578080|PMID:15843416) RGD PMID:15843416 MGI:3578080 NCBI chr 1:200,590,951...200,696,946
Ensembl chr 1:200,590,953...200,696,928 		JBrowse link
G Foxe1 forkhead box E1 ISO MGI:2181780 (MGI:1276273|PMID:9697704) RGD PMID:9697704 MGI:1276273 NCBI chr 5:61,954,549...61,957,357
Ensembl chr 5:61,954,549...61,957,357 		JBrowse link
G Hoxc4 homeo box C4 IEA
ISO		 GO_REF:0000107
MGI:2150683 (MGI:81673|PMID:8660891)		 Ensembl
RGD		 PMID:8660891 GO_REF:0000107 MGI:81673 NCBI chr 7:144,646,605...144,652,589
Ensembl chr 7:144,647,587...144,650,129 		JBrowse link
G Neurod1 neuronal differentiation 1 ISO (MGI:1096974|PMID:9308961) RGD PMID:9308961 MGI:1096974 NCBI chr 3:66,414,314...66,417,617
Ensembl chr 3:66,414,308...66,417,741 		JBrowse link
G Rbp4 retinol binding protein 4 ISO (MGI:3604178|PMID:15994349) RGD PMID:15994349 MGI:3604178 NCBI chr 1:256,806,476...256,813,678
Ensembl chr 1:256,806,472...256,813,711 		JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 ISO MGI:2386105|MGI:3611933 (MGI:3610843|PMID:16287714) RGD PMID:16287714 MGI:3610843 NCBI chr 8:22,648,323...22,739,468
Ensembl chr 8:22,648,323...22,739,468 		JBrowse link
auditory receptor cell morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mir96 microRNA 96 ISO MGI:4354110 (MGI:4353582|PMID:19363478) RGD PMID:19363478 MGI:4353582 NCBI chr 4:57,463,366...57,463,471
Ensembl chr 4:57,463,366...57,463,471 		JBrowse link
G Rac1 Rac family small GTPase 1 ISO MGI:2663662|MGI:2663669 (MGI:4430014|PMID:20016102) RGD PMID:20016102 MGI:4430014 NCBI chr12:13,090,316...13,111,841
Ensembl chr12:13,090,172...13,111,873 		JBrowse link
G Scrib scribble planar cell polarity protein ISO MGI:2139764 (MGI:4439427|PMID:20215345) RGD PMID:20215345 MGI:4439427 NCBI chr 7:117,105,810...117,128,802
Ensembl chr 7:117,105,810...117,128,798 		JBrowse link
G Sec24b SEC24 homolog B, COPII coat complex component ISO MGI:2145950|MGI:4440621 (MGI:4439427|PMID:20215345) RGD PMID:20215345 MGI:4439427 NCBI chr 2:230,286,886...230,356,887
Ensembl chr 2:230,287,296...230,356,919 		JBrowse link
G Slitrk6 SLIT and NTRK-like family, member 6 ISO MGI:4417931 (MGI:4413621|PMID:19936227) RGD PMID:19936227 MGI:4413621 NCBI chr15:95,507,632...95,514,259
Ensembl chr15:95,507,640...95,514,259 		JBrowse link
G Wdpcp WD repeat containing planar cell polarity effector IEA
ISO		 GO_REF:0000107
MGI:5558098 (MGI:5544506|PMID:24302887)		 Ensembl
RGD		 PMID:24302887 GO_REF:0000107 MGI:5544506 NCBI chr14:106,393,959...106,759,511
Ensembl chr14:106,393,959...106,759,505 		JBrowse link
auditory receptor cell stereocilium organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp2b2 ATPase plasma membrane Ca2+ transporting 2 ISO MGI:1856799 (MGI:3709803|PMID:11875276) RGD PMID:11875276 MGI:3709803 NCBI chr 4:145,704,779...145,948,997
Ensembl chr 4:145,703,046...146,016,325 		JBrowse link
G Cdh23 cadherin-related 23 ISO
IEA		 MGI:1856228|MGI:1856681|MGI:1891428|MGI:2154548|MGI:2154549 (MGI:1929001|PMID:11138008), (MGI:1933915|PMID:11322776), (MGI:3526751|PMID:15537665), (MGI:3625226|PMID:12121736), (MGI:3686545|PMID:17050716), (MGI:5468200|PMID:23217710), (MGI:75953|PMID:7610888), (MGI:81497|PMID:8790740), (MGI:86134|PMID:9039475)
GO_REF:0000107		 RGD
Ensembl		 PMID:7610888 PMID:8790740 PMID:9039475 PMID:11138008 PMID:11322776 PMID:12121736 PMID:15537665 PMID:17050716 PMID:23217710 GO_REF:0000107 MGI:1929001 MGI:1933915 MGI:3526751 MGI:3625226 MGI:3686545 MGI:5468200 MGI:75953 MGI:81497 MGI:86134 NCBI chr20:29,857,018...30,263,758
Ensembl chr20:29,857,637...29,990,111 		JBrowse link
G Clic5 chloride intracellular channel 5 ISO
IBA		 MGI:3663254 (MGI:3663248|PMID:17021174)
PMID:21873635		 RGD PMID:17021174, PMID:21873635 MGI:3663248, RGD:13792537 NCBI chr 9:19,121,676...19,372,673
Ensembl chr 9:19,121,677...19,372,673 		JBrowse link
G Clrn1 clarin 1 IEA
ISO		 GO_REF:0000107
MGI:3850171 (MGI:3849925|PMID:19414487), (MGI:4353469|PMID:19423712)		 Ensembl
RGD		 PMID:19414487 PMID:19423712 GO_REF:0000107 MGI:3849925 MGI:4353469 NCBI chr 2:149,049,925...149,088,787
Ensembl chr 2:149,049,925...149,088,787 		JBrowse link
G Grxcr2 glutaredoxin and cysteine rich domain containing 2 ISO MGI:2139535|MGI:6281113|MGI:6281114 (MGI:6278501|PMID:30380417) RGD PMID:30380417 MGI:6278501 NCBI chr18:36,308,925...36,334,643
Ensembl chr18:36,308,925...36,322,320 		JBrowse link
G Lhfpl5 LHFPL tetraspan subfamily member 5 ISO MGI:3055797|MGI:3718054 (MGI:3578102|PMID:15905332), (MGI:3759710|PMID:17876667), (MGI:5468200|PMID:23217710) RGD PMID:15905332 PMID:17876667 PMID:23217710 MGI:3578102 MGI:3759710 MGI:5468200 NCBI chr20:5,815,837...5,826,137
Ensembl chr20:5,815,837...5,826,137 		JBrowse link
G Myo3a myosin IIIA ISO MGI:2448580 (MGI:5766107|PMID:26754646) RGD PMID:26754646 MGI:5766107 NCBI chr17:88,952,635...89,167,538
Ensembl chr17:88,963,981...89,167,018 		JBrowse link
G Myo3b myosin IIIB ISO MGI:2183924 (MGI:5766107|PMID:26754646) RGD PMID:26754646 MGI:5766107 NCBI chr 3:56,355,433...56,717,740
Ensembl chr 3:56,355,431...56,584,547 		JBrowse link
G Myo7a myosin VIIA ISO MGI:1860092|MGI:2155422 (MGI:2156358|PMID:11753415), (MGI:3625226|PMID:12121736), (MGI:3686545|PMID:17050716) RGD PMID:11753415 PMID:12121736 PMID:17050716 MGI:2156358 MGI:3625226 MGI:3686545 NCBI chr 1:163,001,313...163,071,545
Ensembl chr 1:163,001,875...163,071,508 		JBrowse link
G Pcdh15 protocadherin related 15 ISO MGI:1855958|MGI:1856394|MGI:1856396|MGI:1890219|MGI:2151877|MGI:3505691 (MGI:1928787|PMID:10978835), (MGI:3526751|PMID:15537665), (MGI:3619110|PMID:11124469), (MGI:3654702|PMID:16887306), (MGI:5468200|PMID:23217710) RGD PMID:10978835 PMID:11124469 PMID:15537665 PMID:16887306 PMID:23217710 MGI:1928787 MGI:3526751 MGI:3619110 MGI:3654702 MGI:5468200 NCBI chr20:14,952,213...15,334,745
Ensembl chr20:14,952,213...15,334,745 		JBrowse link
G Pdzd7 PDZ domain containing 7 ISO
IBA		 MGI:4433578 (MGI:5565635|PMID:24334608)
PMID:21873635		 RGD PMID:24334608, PMID:21873635 MGI:5565635, RGD:13792537 NCBI chr 1:264,776,393...264,796,206
Ensembl chr 1:264,776,398...264,794,938 		JBrowse link
G Pls1 plastin 1 IEA
ISO		 GO_REF:0000107
(MGI:5608770|PMID:25124451)		 Ensembl
RGD		 PMID:25124451 GO_REF:0000107 MGI:5608770 NCBI chr 8:103,557,361...103,659,625
Ensembl chr 8:103,557,364...103,608,913 		JBrowse link
G Rest RE1-silencing transcription factor ISS
ISO		 GO_REF:0000024
(MGI:6193260|PMID:29961578)		 UniProt
RGD		 PMID:29961578 GO_REF:0000024 MGI:6193260 NCBI chr14:33,131,985...33,152,019
Ensembl chr14:33,134,511...33,164,141 		JBrowse link
G Ripor2 RHO family interacting cell polarization regulator 2 ISO (MGI:5789047|PMID:27269051) RGD PMID:27269051 MGI:5789047 NCBI chr17:42,324,594...42,549,907
Ensembl chr17:42,324,594...42,422,053 		JBrowse link
G Scrib scribble planar cell polarity protein ISO MGI:2139764 (MGI:4439427|PMID:20215345) RGD PMID:20215345 MGI:4439427 NCBI chr 7:117,105,810...117,128,802
Ensembl chr 7:117,105,810...117,128,798 		JBrowse link
G Sec24b SEC24 homolog B, COPII coat complex component ISO MGI:2145950|MGI:4440621 (MGI:4439427|PMID:20215345) RGD PMID:20215345 MGI:4439427 NCBI chr 2:230,286,886...230,356,887
Ensembl chr 2:230,287,296...230,356,919 		JBrowse link
G Slc9a3r1 SLC9A3 regulator 1 ISO MGI:3526430 (MGI:5578076|PMID:24920589) RGD PMID:24920589 MGI:5578076 NCBI chr10:103,713,045...103,730,145
Ensembl chr10:103,713,045...103,730,145 		JBrowse link
G Sod1 superoxide dismutase 1 ISS
ISO		 GO_REF:0000024
MGI:1857872 (MGI:1344578|PMID:10466888), (MGI:3700629|PMID:10464373)		 UniProt
RGD		 PMID:10464373 PMID:10466888 GO_REF:0000024 MGI:1344578 MGI:3700629 NCBI chr11:30,363,282...30,368,858
Ensembl chr11:30,363,280...30,368,862 		JBrowse link
G Strc stereocilin ISO MGI:3818633 (MGI:3818235|PMID:18849963), (MGI:5430850|PMID:21165971) RGD PMID:18849963 PMID:21165971 MGI:3818235 MGI:5430850 NCBI chr 3:113,324,403...113,343,513
Ensembl chr 3:113,324,698...113,342,675 		JBrowse link
G Tprn taperin ISO MGI:2685697 (MGI:6278501|PMID:30380417) RGD PMID:30380417 MGI:6278501 NCBI chr 3:2,480,232...2,487,710
Ensembl chr 3:2,480,232...2,487,710 		JBrowse link
G Triobp TRIO and F-actin binding protein ISO MGI:4881773 (MGI:4881391|PMID:20510926) RGD PMID:20510926 MGI:4881391 NCBI chr 7:120,173,892...120,237,145
Ensembl chr 7:120,176,530...120,230,420 		JBrowse link
G Whrn whirlin IEA
IBA
ISO		 GO_REF:0000107
PMID:21873635
MGI:4432119 (MGI:5796227|PMID:27117407)		 Ensembl
RGD		 PMID:27117407, PMID:21873635 GO_REF:0000107 MGI:5796227, RGD:13792537 NCBI chr 5:79,235,541...79,317,206
Ensembl chr 5:79,234,950...79,317,206 		JBrowse link
closure of optic fissure term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Phactr4 phosphatase and actin regulator 4 ISO (MGI:3719969|PMID:17609112) RGD PMID:17609112 MGI:3719969 NCBI chr 5:150,533,895...150,609,423
Ensembl chr 5:150,546,430...150,609,352 		JBrowse link
G Sox11 SRY-box transcription factor 11 ISS
ISO		 GO_REF:0000024
(MGI:3797299|PMID:18423449)		 UniProt
RGD		 PMID:18423449 GO_REF:0000024 MGI:3797299 NCBI chr 6:46,629,967...46,631,988
Ensembl chr 6:46,629,974...46,631,983 		JBrowse link
cochlea morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cthrc1 collagen triple helix repeat containing 1 ISO MGI:1915838 (MGI:3814781|PMID:18606138) RGD PMID:18606138 MGI:3814781 NCBI chr 7:77,966,722...77,977,004
Ensembl chr 7:77,966,722...77,977,004 		JBrowse link
G Dvl1 dishevelled segment polarity protein 1 ISO MGI:106613 (MGI:3589836|PMID:16116426) RGD PMID:16116426 MGI:3589836 NCBI chr 5:173,295,948...173,308,014
Ensembl chr 5:173,296,270...173,307,945 		JBrowse link
G Dvl2 dishevelled segment polarity protein 2 ISO MGI:108100|MGI:94941 (MGI:3589836|PMID:16116426), (MGI:3821448|PMID:19008950) RGD PMID:16116426 PMID:19008950 MGI:3589836 MGI:3821448 NCBI chr10:56,609,810...56,619,269
Ensembl chr10:56,610,051...56,619,269 		JBrowse link
G Dvl3 dishevelled segment polarity protein 3 ISO MGI:106613|MGI:2135272 (MGI:3821448|PMID:19008950) RGD PMID:19008950 MGI:3821448 NCBI chr11:84,051,177...84,068,479
Ensembl chr11:84,051,078...84,068,302 		JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 ISO MGI:1857803 (MGI:1335261|PMID:10072433) RGD PMID:10072433 MGI:1335261 NCBI chr 5:4,275,728...4,495,525
Ensembl chr 5:4,373,626...4,513,142 		JBrowse link
G Frzb frizzled-related protein ISO MGI:98958 (MGI:3714704|PMID:17433286) RGD PMID:17433286 MGI:3714704 NCBI chr 3:67,635,604...67,668,772
Ensembl chr 3:67,635,607...67,668,772 		JBrowse link
G Fzd2 frizzled class receptor 2 IEA
ISO		 GO_REF:0000107
MGI:2135272 (MGI:4837757|PMID:20940229)		 Ensembl
RGD		 PMID:20940229 GO_REF:0000107 MGI:4837757 NCBI chr10:90,550,147...90,552,057
Ensembl chr10:90,550,147...90,552,057 		JBrowse link
G Gli2 GLI family zinc finger 2 ISO MGI:1857509 (MGI:3709667|PMID:17395647) RGD PMID:17395647 MGI:3709667 NCBI chr13:34,829,021...35,049,172
Ensembl chr13:34,829,139...35,048,444 		JBrowse link
G Grhl3 grainyhead-like transcription factor 3 ISO MGI:2135272 (MGI:4819429|PMID:20643356) RGD PMID:20643356 MGI:4819429 NCBI chr 5:153,893,039...153,925,045
Ensembl chr 5:153,893,039...153,924,896 		JBrowse link
G Hoxa1 homeobox A1 ISO (PMID:16155570) RGD PMID:16155570 NCBI chr 4:82,124,358...82,127,182
Ensembl chr 4:82,125,406...82,127,066 		JBrowse link
G Hpn hepsin ISS
ISO		 GO_REF:0000024
(MGI:5306554|PMID:20683358)		 UniProt
RGD		 PMID:20683358 GO_REF:0000024 MGI:5306554 NCBI chr 1:89,534,112...89,549,575
Ensembl chr 1:89,534,106...89,543,967 		JBrowse link
G Myo3a myosin IIIA ISO (MGI:5766107|PMID:26754646) RGD PMID:26754646 MGI:5766107 NCBI chr17:88,952,635...89,167,538
Ensembl chr17:88,963,981...89,167,018 		JBrowse link
G Myo3b myosin IIIB ISO (MGI:5766107|PMID:26754646) RGD PMID:26754646 MGI:5766107 NCBI chr 3:56,355,433...56,717,740
Ensembl chr 3:56,355,431...56,584,547 		JBrowse link
G Neurog1 neurogenin 1 ISO UniProtKB:Q6ZNK6|UniProtKB:Q8TF63 (PMID:23419067) RGD PMID:23419067 NCBI chr17:9,154,656...9,156,175
Ensembl chr17:9,154,656...9,156,175 		JBrowse link
G Pax2 paired box 2 ISS
ISO		 GO_REF:0000024
MGI:1857673|UniProtKB:Q00288 (MGI:3702803|PMID:16916509), (MGI:4822275|PMID:20727173), (MGI:84247|PMID:8951055)		 UniProt
RGD		 PMID:8951055 PMID:16916509 PMID:20727173 GO_REF:0000024 MGI:3702803 MGI:4822275 MGI:84247 NCBI chr 1:264,493,579...264,585,073
Ensembl chr 1:264,504,591...264,583,329 		JBrowse link
G Pou3f4 POU class 3 homeobox 4 ISS
ISO		 GO_REF:0000024
UniProtKB:P70323 (MGI:5284768|PMID:18231833)		 UniProt
RGD		 PMID:18231833 GO_REF:0000024 MGI:5284768 NCBI chr  X:82,143,789...82,145,066
Ensembl chr  X:82,143,789...82,145,066 		JBrowse link
G Ptk7 protein tyrosine kinase 7 ISO MGI:3640803 (MGI:4830023|PMID:20704721) RGD PMID:20704721 MGI:4830023 NCBI chr 9:16,662,588...16,729,888
Ensembl chr 9:16,702,460...16,729,030 		JBrowse link
G Rac1 Rac family small GTPase 1 ISO MGI:2663662|MGI:2663669 (MGI:4430014|PMID:20016102) RGD PMID:20016102 MGI:4430014 NCBI chr12:13,090,316...13,111,841
Ensembl chr12:13,090,172...13,111,873 		JBrowse link
G Six1 SIX homeobox 1 ISO MGI:2655195 (MGI:2671031|PMID:12874121) RGD PMID:12874121 MGI:2671031 NCBI chr 6:95,929,060...95,934,296
Ensembl chr 6:95,929,060...95,934,296 		JBrowse link
G Sox9 SRY-box transcription factor 9 ISS
ISO		 GO_REF:0000024
MGI:2385468|MGI:3841145 (MGI:4454502|PMID:20346939)		 UniProt
RGD		 PMID:20346939 GO_REF:0000024 MGI:4454502 NCBI chr10:101,288,528...101,294,030
Ensembl chr10:101,288,489...101,293,379 		JBrowse link
G Tbx1 T-box transcription factor 1 ISS
ISO		 GO_REF:0000024
MGI:2179136|UniProtKB:P62515 (MGI:3765363|PMID:17825816), (MGI:5284768|PMID:18231833)		 UniProt
RGD		 PMID:17825816 PMID:18231833 GO_REF:0000024 MGI:3765363 MGI:5284768 NCBI chr11:86,552,022...86,561,647
Ensembl chr11:86,552,022...86,560,969 		JBrowse link
G Tbx18 T-box transcription factor 18 ISO MGI:3044915 (MGI:3788971|PMID:18353863) RGD PMID:18353863 MGI:3788971 NCBI chr 8:95,359,354...95,387,363
Ensembl chr 8:95,359,354...95,387,363 		JBrowse link
G Tifab TIFA inhibitor ISO UniProtKB:Q8TF63|UniProtKB:Q92886 (PMID:23419067) RGD PMID:23419067 NCBI chr17:9,234,948...9,239,266
Ensembl chr17:9,236,249...9,239,265 		JBrowse link
G Tshr thyroid stimulating hormone receptor IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 6:115,170,290...115,306,871
Ensembl chr 6:115,170,865...115,306,871 		JBrowse link
G Tshr-ps1 thyroid stimulating hormone receptor, pseudogene 1 ISO (MGI:3652455|PMID:10575115) RGD PMID:10575115 MGI:3652455 NCBI chr 4:93,447,412...93,448,194 JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 ISO MGI:108100|MGI:1857642|MGI:1888513|MGI:2655333|MGI:98958 (MGI:3589836|PMID:16116426), (MGI:3714704|PMID:17433286), (MGI:3814781|PMID:18606138), (MGI:3821448|PMID:19008950), (MGI:4819429|PMID:20643356), (MGI:4837757|PMID:20940229) RGD PMID:16116426 PMID:17433286 PMID:18606138 PMID:19008950 PMID:20643356 PMID:20940229 MGI:3589836 MGI:3714704 MGI:3814781 MGI:3821448 MGI:4819429 MGI:4837757 NCBI chr13:90,379,203...90,405,627
Ensembl chr13:90,380,632...90,405,591 		JBrowse link
G Wnt5a Wnt family member 5A IEA
ISO		 GO_REF:0000107
MGI:1857617|MGI:2135272 (MGI:3714704|PMID:17433286)		 Ensembl
RGD		 PMID:17433286 GO_REF:0000107 MGI:3714704 NCBI chr16:4,469,451...4,490,271
Ensembl chr16:4,469,468...4,489,860 		JBrowse link
G Zeb1 zinc finger E-box binding homeobox 1 IEA
ISO		 GO_REF:0000107
MGI:1861230 (MGI:5294688|PMID:21980308)		 Ensembl
RGD		 PMID:21980308 GO_REF:0000107 MGI:5294688 NCBI chr17:54,656,627...54,714,920
Ensembl chr17:54,658,463...54,714,914 		JBrowse link
ear morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chd7 chromodomain helicase DNA binding protein 7 ISO MGI:1862038 (MGI:1861752|PMID:10932191) RGD PMID:10932191 MGI:1861752 NCBI chr 5:21,769,087...21,952,036
Ensembl chr 5:21,830,882...21,950,696 		JBrowse link
G Gjb6 gap junction protein, beta 6 ISO MGI:2447863 (MGI:2447513|PMID:12490528) RGD PMID:12490528 MGI:2447513 NCBI chr15:37,400,888...37,411,656
Ensembl chr15:37,400,889...37,410,848 		JBrowse link
G Nipbl NIPBL, cohesin loading factor ISO (PMID:8291537) RGD PMID:8291537 NCBI chr 2:57,508,830...57,676,197
Ensembl chr 2:57,509,428...57,600,820 		JBrowse link
G Tbx1 T-box transcription factor 1 ISS
ISO		 GO_REF:0000024
MGI:2179191 (MGI:3050165|PMID:15190012)		 UniProt
RGD		 PMID:15190012 GO_REF:0000024 MGI:3050165 NCBI chr11:86,552,022...86,561,647
Ensembl chr11:86,552,022...86,560,969 		JBrowse link
G Wdr19 WD repeat domain 19 ISO MGI:5315747 (MGI:5314316|PMID:22228095) RGD PMID:22228095 MGI:5314316 NCBI chr14:44,705,012...44,767,120
Ensembl chr14:44,705,012...44,767,120 		JBrowse link
embryonic camera-type eye formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stra6 signaling receptor and transporter of retinol STRA6 ISO
IEA		 (PMID:17273977)
GO_REF:0000107		 RGD
Ensembl		 PMID:17273977 GO_REF:0000107 NCBI chr 8:62,925,364...62,944,438
Ensembl chr 8:62,925,357...62,944,437 		JBrowse link
G Twist1 twist family bHLH transcription factor 1 ISO (PMID:17070479) RGD PMID:17070479 NCBI chr 6:53,401,241...53,403,235
Ensembl chr 6:53,401,109...53,403,214 		JBrowse link
embryonic camera-type eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp7 bone morphogenetic protein 7 ISO MGI:1857654 (MGI:1332362|PMID:10049573) RGD PMID:10049573 MGI:1332362 NCBI chr 3:170,879,972...170,955,820
Ensembl chr 3:170,879,973...170,955,399 		JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 ISO MGI:97490 (MGI:3807101|PMID:18653562) RGD PMID:18653562 MGI:3807101 NCBI chr 1:12,823,363...12,825,806
Ensembl chr 1:12,823,363...12,825,786 		JBrowse link
G Cryaa crystallin, alpha A ISO MGI:3777403 (MGI:3775669|PMID:18056999) RGD PMID:18056999 MGI:3775669 NCBI chr20:10,438,444...10,442,189
Ensembl chr20:10,438,444...10,442,187 		JBrowse link
G Foxf2 forkhead box F2 ISO (MGI:5297296|PMID:22022403) RGD PMID:22022403 MGI:5297296 NCBI chr17:34,150,417...34,156,450 JBrowse link
G Fzd5 frizzled class receptor 5 IEA
ISO		 GO_REF:0000107
(MGI:3826935|PMID:18832390)		 Ensembl
RGD		 PMID:18832390 GO_REF:0000107 MGI:3826935 NCBI chr 9:71,443,784...71,445,541
Ensembl chr 9:71,443,588...71,445,739 		JBrowse link
G Hipk1 homeodomain interacting protein kinase 1 IEA
ISO		 GO_REF:0000107
(MGI:4818711|PMID:20579985)		 Ensembl
RGD		 PMID:20579985 GO_REF:0000107 MGI:4818711 NCBI chr 2:206,224,015...206,274,910
Ensembl chr 2:206,224,015...206,274,079 		JBrowse link
G Hipk2 homeodomain interacting protein kinase 2 ISO (MGI:4818711|PMID:20579985) RGD PMID:20579985 MGI:4818711 NCBI chr 4:66,438,390...66,625,183
Ensembl chr 4:66,445,266...66,624,912 		JBrowse link
G Ift122 intraflagellar transport 122 ISO MGI:3578529 (MGI:6094959|PMID:28778798) RGD PMID:28778798 MGI:6094959 NCBI chr 4:147,756,574...147,826,983
Ensembl chr 4:147,756,553...147,826,997 		JBrowse link
G Ift172 intraflagellar transport 172 ISO MGI:2682066 (MGI:6094959|PMID:28778798) RGD PMID:28778798 MGI:6094959 NCBI chr 6:26,390,686...26,485,459 JBrowse link
G Ihh Indian hedgehog signaling molecule ISO MGI:1934258 (MGI:3807419|PMID:18582859) RGD PMID:18582859 MGI:3807419 NCBI chr 9:82,208,223...82,214,440
Ensembl chr 9:82,208,223...82,214,440 		JBrowse link
G Kdm2b lysine demethylase 2B ISO (MGI:4949568|PMID:21220025) RGD PMID:21220025 MGI:4949568 NCBI chr12:39,021,924...39,161,954
Ensembl chr12:39,078,119...39,161,956 		JBrowse link
G Lrp6 LDL receptor related protein 6 ISO
IBA		 MGI:2156191|MGI:4415718 (MGI:3823171|PMID:18985738), (MGI:4413396|PMID:19653321)
PMID:21873635		 RGD PMID:18985738 PMID:19653321, PMID:21873635 MGI:3823171 MGI:4413396, RGD:13792537 NCBI chr 4:168,194,054...168,323,962
Ensembl chr 4:168,194,927...168,323,751 		JBrowse link
G Pax6 paired box 6 IEA
ISO		 GO_REF:0000107
MGI:1306784 (MGI:3807101|PMID:18653562)		 Ensembl
RGD		 PMID:18653562 GO_REF:0000107 MGI:3807101 NCBI chr 3:95,700,241...95,728,682
Ensembl chr 3:95,707,386...95,728,624 		JBrowse link
G Sp1 Sp1 transcription factor ISO MGI:1277166 (MGI:3717030|PMID:17584888) RGD PMID:17584888 MGI:3717030 NCBI chr 7:144,014,173...144,044,635
Ensembl chr 7:144,014,173...144,044,629 		JBrowse link
G Sp3 Sp3 transcription factor ISO MGI:98372 (MGI:3717030|PMID:17584888) RGD PMID:17584888 MGI:3717030 NCBI chr 3:59,644,579...59,689,011
Ensembl chr 3:59,646,015...59,688,692 		JBrowse link
G Tbx2 T-box transcription factor 2 ISO (MGI:3487212|PMID:15459098) RGD PMID:15459098 MGI:3487212 NCBI chr10:73,278,932...73,290,764
Ensembl chr10:73,279,119...73,289,921 		JBrowse link
G Tfap2a transcription factor AP-2 alpha ISO MGI:2176682 (MGI:1313057|PMID:9811866) RGD PMID:9811866 MGI:1313057 NCBI chr17:24,653,342...24,670,457
Ensembl chr17:24,654,902...24,670,457 		JBrowse link
G Th tyrosine hydroxylase ISO (MGI:3617102|PMID:16445854) RGD PMID:16445854 MGI:3617102 NCBI chr 1:216,073,034...216,080,287
Ensembl chr 1:216,073,031...216,080,287 		JBrowse link
G Zeb1 zinc finger E-box binding homeobox 1 IEA
ISO		 GO_REF:0000107
MGI:1857515 (MGI:3790562|PMID:18436818)		 Ensembl
RGD		 PMID:18436818 GO_REF:0000107 MGI:3790562 NCBI chr17:54,656,627...54,714,920
Ensembl chr17:54,658,463...54,714,914 		JBrowse link
embryonic cranial skeleton morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alx3 ALX homeobox 3 IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 2:210,376,510...210,386,928
Ensembl chr 2:210,381,829...210,386,928 		JBrowse link
G Bmp4 bone morphogenetic protein 4 IEA
ISO		 GO_REF:0000107
MGI:1857137 (MGI:1095762|PMID:9268572)		 Ensembl
RGD		 PMID:9268572 GO_REF:0000107 MGI:1095762 NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740 		JBrowse link
G Dlx2 distal-less homeobox 2 IEA
ISO		 GO_REF:0000107
MGI:1857828 (MGI:76977|PMID:7590232)		 Ensembl
RGD		 PMID:7590232 GO_REF:0000107 MGI:76977 NCBI chr 3:58,180,088...58,181,971
Ensembl chr 3:58,180,088...58,181,971 		JBrowse link
G Eif4a3 eukaryotic translation initiation factor 4A3 ISO
ISS		 (PMID:24360810)
GO_REF:0000024		 RGD
UniProt		 PMID:24360810 GO_REF:0000024 NCBI chr10:108,415,201...108,425,195
Ensembl chr10:108,415,202...108,425,206 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 ISO (PMID:7874170), (PMID:7987400) RGD PMID:7874170 PMID:7987400 NCBI chr 1:200,590,951...200,696,946
Ensembl chr 1:200,590,953...200,696,928 		JBrowse link
G Foxc2 forkhead box C2 ISO MGI:1857865 (MGI:86990|PMID:9106663) RGD PMID:9106663 MGI:86990 NCBI chr19:53,044,379...53,047,081
Ensembl chr19:53,044,379...53,047,081 		JBrowse link
G Gas1 growth arrest-specific 1 ISO MGI:2388397|MGI:98297 (MGI:3713422|PMID:17525797) RGD PMID:17525797 MGI:3713422 NCBI chr17:4,846,116...4,849,350
Ensembl chr17:4,846,789...4,847,940 		JBrowse link
G Gnas GNAS complex locus ISO MGI:3043361 (MGI:3619837|PMID:15797856) RGD PMID:15797856 MGI:3619837 NCBI chr 3:172,374,957...172,434,988
Ensembl chr 3:172,374,957...172,428,483
Ensembl chr 3:172,374,957...172,428,483 		JBrowse link
G Grhl2 grainyhead-like transcription factor 2 ISO MGI:4942413 (MGI:4943100|PMID:21377456) RGD PMID:21377456 MGI:4943100 NCBI chr 7:76,058,623...76,197,360
Ensembl chr 7:76,059,386...76,197,856 		JBrowse link
G Ift140 intraflagellar transport 140 ISO MGI:4458412 (MGI:5505384|PMID:23469164) RGD PMID:23469164 MGI:5505384 NCBI chr10:14,373,668...14,461,509
Ensembl chr10:14,373,679...14,461,160 		JBrowse link
G Irx5 iroquois homeobox 5 ISO (PMID:22581230) RGD PMID:22581230 NCBI chr19:16,415,813...16,421,088
Ensembl chr19:16,415,636...16,421,191 		JBrowse link
G Mmp14 matrix metallopeptidase 14 ISO MGI:1276107 (MGI:3771253|PMID:18022611) RGD PMID:18022611 MGI:3771253 NCBI chr15:33,074,441...33,083,666
Ensembl chr15:33,074,441...33,083,655 		JBrowse link
G Mmp16 matrix metallopeptidase 16 IEA
ISO		 GO_REF:0000107
MGI:2445723 (MGI:3771253|PMID:18022611)		 Ensembl
RGD		 PMID:18022611 GO_REF:0000107 MGI:3771253 NCBI chr 5:31,568,344...31,818,368
Ensembl chr 5:31,568,419...31,810,484 		JBrowse link
G Nipbl NIPBL, cohesin loading factor ISO MGI:4332250 (MGI:4367301|PMID:19763162) RGD PMID:19763162 MGI:4367301 NCBI chr 2:57,508,830...57,676,197
Ensembl chr 2:57,509,428...57,600,820 		JBrowse link
G Nodal nodal growth differentiation factor ISO MGI:2158732 (MGI:2155575|PMID:11311163) RGD PMID:11311163 MGI:2155575 NCBI chr20:31,035,729...31,044,096
Ensembl chr20:31,035,729...31,044,096 		JBrowse link
G Pax5 paired box 5 ISO MGI:2386577 (MGI:5476374|PMID:23349049) RGD PMID:23349049 MGI:5476374 NCBI chr 5:60,007,587...60,191,973
Ensembl chr 5:60,007,587...60,191,941 		JBrowse link
G Pdgfra platelet derived growth factor receptor alpha IEA
IBA
ISO
ISS		 GO_REF:0000107
PMID:21873635
(MGI:894516|PMID:9226440)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:9226440, PMID:21873635 GO_REF:0000024 GO_REF:0000107 MGI:894516, RGD:13792537 NCBI chr14:35,527,926...35,581,130
Ensembl chr14:35,527,927...35,581,031 		JBrowse link
G Prrx1 paired related homeobox 1 ISO MGI:1857640|MGI:98218 (MGI:1306737|PMID:9729491), (MGI:73363|PMID:7758948) RGD PMID:7758948 PMID:9729491 MGI:1306737 MGI:73363 NCBI chr13:81,147,038...81,215,559
Ensembl chr13:81,147,348...81,214,546 		JBrowse link
G Prrx2 paired related homeobox 2 ISO MGI:97712 (MGI:1306737|PMID:9729491) RGD PMID:9729491 MGI:1306737 NCBI chr 3:9,681,871...9,718,051
Ensembl chr 3:9,681,871...9,718,051 		JBrowse link
G Runx2 RUNX family transcription factor 2 ISO
IEA		 MGI:104685|MGI:98872 (MGI:3042355|PMID:15030764)
GO_REF:0000107		 RGD
Ensembl		 PMID:15030764 GO_REF:0000107 MGI:3042355 NCBI chr 9:18,564,743...18,773,092
Ensembl chr 9:18,564,927...18,773,092 		JBrowse link
G Setd2 SET domain containing 2, histone lysine methyltransferase ISO MGI:4437211 (MGI:4431136|PMID:20133625) RGD PMID:20133625 MGI:4431136 NCBI chr 8:118,802,478...118,888,224
Ensembl chr 8:118,803,075...118,888,224 		JBrowse link
G Six1 SIX homeobox 1 ISO MGI:106034 (MGI:4822095|PMID:20515681) RGD PMID:20515681 MGI:4822095 NCBI chr 6:95,929,060...95,934,296
Ensembl chr 6:95,929,060...95,934,296 		JBrowse link
G Six2 SIX homeobox 2 ISO MGI:3691857 (MGI:4822095|PMID:20515681) RGD PMID:20515681 MGI:4822095 NCBI chr 6:8,952,572...8,955,893
Ensembl chr 6:8,952,572...8,956,276 		JBrowse link
G Six4 SIX homeobox 4 ISO MGI:102780 (MGI:4822095|PMID:20515681) RGD PMID:20515681 MGI:4822095 NCBI chr 6:95,984,868...95,999,709
Ensembl chr 6:95,984,868...95,998,529 		JBrowse link
G Slc39a1 solute carrier family 39 member 1 ISO MGI:2147269|MGI:3625131 (MGI:3624433|PMID:16652366) RGD PMID:16652366 MGI:3624433 NCBI chr 2:189,609,766...189,615,367
Ensembl chr 2:189,609,800...189,615,366 		JBrowse link
G Slc39a3 solute carrier family 39 member 3 ISO MGI:1353474 (MGI:3624433|PMID:16652366) RGD PMID:16652366 MGI:3624433 NCBI chr 7:11,545,073...11,551,074
Ensembl chr 7:11,545,024...11,553,370 		JBrowse link
G Smad2 SMAD family member 2 ISO MGI:1201674 (MGI:3618021|PMID:15183723) RGD PMID:15183723 MGI:3618021 NCBI chr18:72,550,107...72,612,078
Ensembl chr18:72,550,219...72,612,078 		JBrowse link
G Smad3 SMAD family member 3 ISO MGI:108051 (MGI:3618021|PMID:15183723) RGD PMID:15183723 MGI:3618021 NCBI chr 8:68,569,530...68,678,349
Ensembl chr 8:68,569,530...68,678,349 		JBrowse link
G Tbx1 T-box transcription factor 1 ISS
ISO		 GO_REF:0000024
MGI:2179191 (MGI:3050165|PMID:15190012)		 UniProt
RGD		 PMID:15190012 GO_REF:0000024 MGI:3050165 NCBI chr11:86,552,022...86,561,647
Ensembl chr11:86,552,022...86,560,969 		JBrowse link
G Tbx15 T-box transcription factor 15 ISO MGI:1856015 (MGI:3604843|PMID:15728667) RGD PMID:15728667 MGI:3604843 NCBI chr 2:201,289,042...201,390,752
Ensembl chr 2:201,289,357...201,390,745 		JBrowse link
G Tfap2a transcription factor AP-2 alpha ISS
ISO		 GO_REF:0000024
MGI:1888387 (MGI:80519|PMID:8622766), (MGI:80520|PMID:8622765)		 UniProt
RGD		 PMID:8622765 PMID:8622766 GO_REF:0000024 MGI:80519 MGI:80520 NCBI chr17:24,653,342...24,670,457
Ensembl chr17:24,654,902...24,670,457 		JBrowse link
G Tgfbr1 transforming growth factor, beta receptor 1 ISO MGI:2680164 (MGI:3701721|PMID:16806156) RGD PMID:16806156 MGI:3701721 NCBI chr 5:63,056,071...63,119,635
Ensembl chr 5:63,050,758...63,119,635 		JBrowse link
G Tgfbr2 transforming growth factor, beta receptor 2 ISO (MGI:2678274|PMID:12975342) RGD PMID:12975342 MGI:2678274 NCBI chr 8:124,310,288...124,399,345
Ensembl chr 8:124,312,754...124,399,494 		JBrowse link
G Twist1 twist family bHLH transcription factor 1 ISO (PMID:8988166), (PMID:8988167)
MGI:99829 (MGI:1100098|PMID:8988167), (MGI:3042355|PMID:15030764)		 RGD PMID:8988166 PMID:8988167 PMID:15030764 MGI:1100098 MGI:3042355 NCBI chr 6:53,401,241...53,403,235
Ensembl chr 6:53,401,109...53,403,214 		JBrowse link
G Twist2 twist family bHLH transcription factor 2 ISO MGI:99829 (MGI:3042355|PMID:15030764) RGD PMID:15030764 MGI:3042355 NCBI chr 9:98,924,134...98,968,510
Ensembl chr 9:98,924,134...98,968,510 		JBrowse link
G Wdr19 WD repeat domain 19 ISO MGI:5315747 (MGI:5314316|PMID:22228095) RGD PMID:22228095 MGI:5314316 NCBI chr14:44,705,012...44,767,120
Ensembl chr14:44,705,012...44,767,120 		JBrowse link
G Wnt9b Wnt family member 9B ISO MGI:1856821|MGI:3526437 (MGI:3588895|PMID:16054034), (MGI:3696935|PMID:16998816) RGD PMID:16054034 PMID:16998816 MGI:3588895 MGI:3696935 NCBI chr10:91,785,892...91,808,061
Ensembl chr10:91,785,893...91,807,937 		JBrowse link
embryonic digestive tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf10 fibroblast growth factor 10 ISO MGI:1859647|MGI:1927833 (MGI:3040447|PMID:15017552), (MGI:3722952|PMID:16618415) RGD PMID:15017552 PMID:16618415 MGI:3040447 MGI:3722952 NCBI chr 2:51,673,480...51,747,533
Ensembl chr 2:51,672,722...51,750,369 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 ISO MGI:2153811|MGI:2183527 (MGI:3722952|PMID:16618415), (MGI:5285062|PMID:21550054), (MGI:5317412|PMID:21492869) RGD PMID:16618415 PMID:21492869 PMID:21550054 MGI:3722952 MGI:5285062 MGI:5317412 NCBI chr 1:200,590,951...200,696,946
Ensembl chr 1:200,590,953...200,696,928 		JBrowse link
G Foxf1 forkhead box F1 ISO (PMID:19500772) RGD PMID:19500772 NCBI chr19:53,012,306...53,016,100
Ensembl chr19:53,012,332...53,016,086 		JBrowse link
G Gata4 GATA binding protein 4 ISO MGI:2386764 (MGI:3590399|PMID:16127717) RGD PMID:16127717 MGI:3590399 NCBI chr15:46,386,703...46,458,679
Ensembl chr15:46,386,712...46,432,965 		JBrowse link
G Gli3 GLI family zinc finger 3 ISO MGI:1856276 (MGI:3608164|PMID:16247775) RGD PMID:16247775 MGI:3608164 NCBI chr17:52,294,942...52,569,036
Ensembl chr17:52,294,942...52,569,036 		JBrowse link
G Hlx H2.0-like homeobox ISO MGI:2182089 (MGI:79044|PMID:8557196) RGD PMID:8557196 MGI:79044 NCBI chr13:102,637,967...102,643,376
Ensembl chr13:102,637,769...102,643,223 		JBrowse link
G Hnf1b HNF1 homeobox B ISO MGI:1857856 (MGI:3807614|PMID:18635606) RGD PMID:18635606 MGI:3807614 NCBI chr10:71,159,863...71,218,902
Ensembl chr10:71,159,869...71,218,902 		JBrowse link
G Id2 inhibitor of DNA binding 2 ISS
ISO		 GO_REF:0000024
(MGI:4399020|PMID:16888283)		 UniProt
RGD		 PMID:16888283 GO_REF:0000024 MGI:4399020 NCBI chr 6:44,360,077...44,361,908
Ensembl chr 6:44,348,501...44,363,915 		JBrowse link
G Ihh Indian hedgehog signaling molecule ISO MGI:1934258 (MGI:1858523|PMID:10821773) RGD PMID:10821773 MGI:1858523 NCBI chr 9:82,208,223...82,214,440
Ensembl chr 9:82,208,223...82,214,440 		JBrowse link
G Nipbl NIPBL, cohesin loading factor ISO (PMID:19242925), (PMID:8291537) RGD PMID:8291537 PMID:19242925 NCBI chr 2:57,508,830...57,676,197
Ensembl chr 2:57,509,428...57,600,820 		JBrowse link
G Ovol2 ovo-like zinc finger 2 ISO MGI:3522498 (MGI:3618450|PMID:16423343) RGD PMID:16423343 MGI:3618450 NCBI chr 3:138,433,990...138,464,511
Ensembl chr 3:138,433,990...138,462,063 		JBrowse link
G Pdgfra platelet derived growth factor receptor alpha IEA
ISO
ISS		 GO_REF:0000107
(MGI:1860627|PMID:10903171)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:10903171 GO_REF:0000024 GO_REF:0000107 MGI:1860627 NCBI chr14:35,527,926...35,581,130
Ensembl chr14:35,527,927...35,581,031 		JBrowse link
G Pitx2 paired-like homeodomain 2 ISO MGI:3767234 (MGI:5285062|PMID:21550054) RGD PMID:21550054 MGI:5285062 NCBI chr 2:233,602,732...233,621,059
Ensembl chr 2:233,602,732...233,621,129 		JBrowse link
G Shh sonic hedgehog signaling molecule IEA
ISO		 GO_REF:0000107
MGI:1934261 (MGI:1858523|PMID:10821773)		 Ensembl
RGD		 PMID:10821773 GO_REF:0000107 MGI:1858523 NCBI chr 4:718,538...727,691
Ensembl chr 4:718,538...727,691 		JBrowse link
G Shox2 short stature homeobox 2 ISO MGI:3605739 (MGI:3604918|PMID:16141225) RGD PMID:16141225 MGI:3604918 NCBI chr 2:164,118,175...164,126,783
Ensembl chr 2:164,118,191...164,126,783 		JBrowse link
G Six2 SIX homeobox 2 ISO (MGI:4365896|PMID:19660448) RGD PMID:19660448 MGI:4365896 NCBI chr 6:8,952,572...8,955,893
Ensembl chr 6:8,952,572...8,956,276 		JBrowse link
G Sox11 SRY-box transcription factor 11 ISS
ISO		 GO_REF:0000024
(MGI:3052265|PMID:15254231)		 UniProt
RGD		 PMID:15254231 GO_REF:0000024 MGI:3052265 NCBI chr 6:46,629,967...46,631,988
Ensembl chr 6:46,629,974...46,631,983 		JBrowse link
G Tcf21 transcription factor 21 IMP RGD PMID:11804032 RGD:727206 NCBI chr 1:23,906,717...23,909,576
Ensembl chr 1:23,906,717...23,909,566 		JBrowse link
G Tcf7 transcription factor 7 ISO MGI:1202879 (MGI:3042541|PMID:15057272) RGD PMID:15057272 MGI:3042541 NCBI chr10:37,616,033...37,646,027
Ensembl chr10:37,617,279...37,645,802 		JBrowse link
G Tcf7l2 transcription factor 7 like 2 ISO MGI:98507 (MGI:3042541|PMID:15057272) RGD PMID:15057272 MGI:3042541 NCBI chr 1:276,686,911...276,730,517
Ensembl chr 1:276,659,542...276,730,514
Ensembl chr 1:276,659,542...276,730,514 		JBrowse link
embryonic ectodermal digestive tract morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxf1 forkhead box F1 ISO (PMID:19500772) RGD PMID:19500772 NCBI chr19:53,012,306...53,016,100
Ensembl chr19:53,012,332...53,016,086 		JBrowse link
embryonic eye morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a1 aldehyde dehydrogenase 1 family, member A1 ISO MGI:1861722 (MGI:3608158|PMID:16207763), (MGI:3624188|PMID:16611695) RGD PMID:16207763 PMID:16611695 MGI:3608158 MGI:3624188 NCBI chr 1:238,222,689...238,264,381
Ensembl chr 1:238,222,521...238,264,330 		JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family, member A3 ISO MGI:1353450|MGI:3043947 (MGI:3608158|PMID:16207763), (MGI:3624188|PMID:16611695) RGD PMID:16207763 PMID:16611695 MGI:3608158 MGI:3624188 NCBI chr 1:127,302,920...127,337,828
Ensembl chr 1:127,301,128...127,337,882 		JBrowse link
G Efemp1 EGF containing fibulin extracellular matrix protein 1 IEA
ISO		 GO_REF:0000107
(PMID:25406291)		 Ensembl
RGD		 PMID:25406291 GO_REF:0000107 NCBI chr14:113,202,382...113,294,993
Ensembl chr14:113,202,419...113,295,014 		JBrowse link
G Fbn1 fibrillin 1 ISO (PMID:25406291) RGD PMID:25406291 NCBI chr 3:117,569,708...117,766,160
Ensembl chr 3:117,569,697...117,766,120 		JBrowse link
G Fbn2 fibrillin 2 ISO (PMID:25406291) RGD PMID:25406291 NCBI chr18:53,068,495...53,272,254
Ensembl chr18:53,068,495...53,181,503 		JBrowse link
G Foxl2 forkhead box L2 ISO MGI:3044226 (MGI:3043431|PMID:15056605) RGD PMID:15056605 MGI:3043431 NCBI chr 8:107,194,492...107,197,644
Ensembl chr 8:107,194,551...107,195,675 		JBrowse link
G Mfap2 microfibril associated protein 2 ISO
IBA		 (PMID:25406291)
PMID:21873635		 RGD PMID:25406291, PMID:21873635 RGD:13792537 NCBI chr 5:159,534,202...159,539,750
Ensembl chr 5:159,534,202...159,539,750 		JBrowse link
G Mfap5 microfibril associated protein 5 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:155,313,671...155,336,228
Ensembl chr 4:155,313,671...155,336,228 		JBrowse link
G Rarb retinoic acid receptor, beta ISO MGI:97858 (MGI:3608158|PMID:16207763) RGD PMID:16207763 MGI:3608158 NCBI chr15:9,915,223...10,262,599
Ensembl chr15:10,120,206...10,262,599 		JBrowse link
G Rarg retinoic acid receptor, gamma ISO MGI:97857 (MGI:3608158|PMID:16207763) RGD PMID:16207763 MGI:3608158 NCBI chr 7:143,840,739...143,863,206
Ensembl chr 7:143,839,980...143,863,186 		JBrowse link
G Vax2 ventral anterior homeobox 2 IEA
ISO		 GO_REF:0000107
MGI:2159246 (MGI:1349226|PMID:10595508), (MGI:2157790|PMID:11830579)		 Ensembl
RGD		 PMID:10595508 PMID:11830579 GO_REF:0000107 MGI:1349226 MGI:2157790 NCBI chr 4:115,388,839...115,412,515
Ensembl chr 4:115,388,839...115,412,515 		JBrowse link
embryonic genitalia morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf10 fibroblast growth factor 10 ISO MGI:1859647 (MGI:3613320|PMID:12004962) RGD PMID:12004962 MGI:3613320 NCBI chr 2:51,673,480...51,747,533
Ensembl chr 2:51,672,722...51,750,369 		JBrowse link
G Ror2 receptor tyrosine kinase-like orphan receptor 2 ISO MGI:2183225 (MGI:3037488|PMID:14745966) RGD PMID:14745966 MGI:3037488 NCBI chr17:11,953,552...12,134,386
Ensembl chr17:11,953,552...12,134,386 		JBrowse link
G Tcf7 transcription factor 7 ISO MGI:1202879 (MGI:3042541|PMID:15057272) RGD PMID:15057272 MGI:3042541 NCBI chr10:37,616,033...37,646,027
Ensembl chr10:37,617,279...37,645,802 		JBrowse link
G Tcf7l2 transcription factor 7 like 2 ISO MGI:98507 (MGI:3042541|PMID:15057272) RGD PMID:15057272 MGI:3042541 NCBI chr 1:276,686,911...276,730,517
Ensembl chr 1:276,659,542...276,730,514
Ensembl chr 1:276,659,542...276,730,514 		JBrowse link
embryonic heart tube formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hand1 heart and neural crest derivatives expressed 1 ISO (MGI:1927045|PMID:11076684) RGD PMID:11076684 MGI:1927045 NCBI chr10:43,250,729...43,253,296
Ensembl chr10:43,250,745...43,253,296 		JBrowse link
embryonic heart tube morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1 activin A receptor type 1 ISO
IEA		 (PMID:19506109)
GO_REF:0000107		 RGD
Ensembl		 PMID:19506109 GO_REF:0000107 NCBI chr 3:44,432,476...44,539,680
Ensembl chr 3:44,432,471...44,522,930 		JBrowse link
G Hes1 hes family bHLH transcription factor 1 IEA
ISO		 GO_REF:0000107
(MGI:4354447|PMID:19609448)		 Ensembl
RGD		 PMID:19609448 GO_REF:0000107 MGI:4354447 NCBI chr11:74,312,837...74,315,249
Ensembl chr11:74,312,806...74,315,248 		JBrowse link
G Megf8 multiple EGF-like-domains 8 IEA
ISO
ISS		 GO_REF:0000107
(MGI:5551355|PMID:24052814)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:24052814 GO_REF:0000024 GO_REF:0000107 MGI:5551355 NCBI chr 1:82,184,671...82,234,045
Ensembl chr 1:82,185,034...82,234,045 		JBrowse link
G Mesp1 mesoderm posterior bHLH transcription factor 1 ISO (MGI:1339460|PMID:10393122) RGD PMID:10393122 MGI:1339460 NCBI chr 1:141,532,390...141,533,908
Ensembl chr 1:141,532,390...141,533,908 		JBrowse link
G Ryr2 ryanodine receptor 2 IEA
ISO
ISS		 GO_REF:0000107
(MGI:1267127|PMID:9628868)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:9628868 GO_REF:0000024 GO_REF:0000107 MGI:1267127 NCBI chr17:65,533,998...65,955,606
Ensembl chr17:65,535,403...65,955,606 		JBrowse link
G Sox17 SRY-box transcription factor 17 ISO (MGI:4946573|PMID:21305474) RGD PMID:21305474 MGI:4946573 NCBI chr 5:14,890,318...14,895,907
Ensembl chr 5:14,890,408...14,895,907 		JBrowse link
G Tbx20 T-box transcription factor 20 ISO (MGI:3579960|PMID:15901664) RGD PMID:15901664 MGI:3579960 NCBI chr 8:25,849,394...25,904,570
Ensembl chr 8:25,850,962...25,904,570 		JBrowse link
G Tead1 TEA domain transcription factor 1 ISO MGI:103262|MGI:104904 (MGI:3773640|PMID:18332127) RGD PMID:18332127 MGI:3773640 NCBI chr 1:177,495,500...177,714,795
Ensembl chr 1:177,495,782...177,707,061 		JBrowse link
G Tead2 TEA domain transcription factor 2 ISO MGI:101876|MGI:103262 (MGI:3773640|PMID:18332127) RGD PMID:18332127 MGI:3773640 NCBI chr 1:101,213,782...101,230,483
Ensembl chr 1:101,213,788...101,230,477 		JBrowse link
G Yap1 Yes1 associated transcriptional regulator ISO MGI:101876|MGI:104904 (MGI:3773640|PMID:18332127) RGD PMID:18332127 MGI:3773640 NCBI chr 8:6,133,014...6,204,240
Ensembl chr 8:6,135,493...6,203,579 		JBrowse link
embryonic neurocranium morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf8 fibroblast growth factor 8 ISO MGI:1917550 (MGI:5796907|PMID:27395007) RGD PMID:27395007 MGI:5796907 NCBI chr 1:265,492,949...265,498,965
Ensembl chr 1:265,493,124...265,498,831 		JBrowse link
G Fuz fuzzy planar cell polarity protein ISO MGI:3531090|MGI:99604 (MGI:5796907|PMID:27395007) RGD PMID:27395007 MGI:5796907 NCBI chr 1:100,891,832...100,896,811
Ensembl chr 1:100,891,866...100,896,807 		JBrowse link
G Gli3 GLI family zinc finger 3 ISO MGI:1856276 (MGI:5796907|PMID:27395007) RGD PMID:27395007 MGI:5796907 NCBI chr17:52,294,942...52,569,036
Ensembl chr17:52,294,942...52,569,036 		JBrowse link
G Hoxa1 homeobox A1 ISO (PMID:16155570) RGD PMID:16155570 NCBI chr 4:82,124,358...82,127,182
Ensembl chr 4:82,125,406...82,127,066 		JBrowse link
G Med12 mediator complex subunit 12 ISO MGI:4839485 (MGI:4839544|PMID:20589884) RGD PMID:20589884 MGI:4839544 NCBI chr  X:71,174,653...71,197,812
Ensembl chr  X:71,174,699...71,197,812 		JBrowse link
G Mthfd1l methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like ISO (MGI:5468075|PMID:23267094) RGD PMID:23267094 MGI:5468075 NCBI chr 1:40,529,092...40,719,232
Ensembl chr 1:40,529,045...40,719,391 		JBrowse link
G Ndst1 N-deacetylase and N-sulfotransferase 1 ISO MGI:3589383 (MGI:3588476|PMID:16020517) RGD PMID:16020517 MGI:3588476 NCBI chr18:55,951,497...56,014,107
Ensembl chr18:55,955,389...55,992,885 		JBrowse link
G Tgfb2 transforming growth factor, beta 2 IDA RGD PMID:11002343 RGD:1579866 NCBI chr13:105,039,639...105,142,010
Ensembl chr13:105,039,853...105,141,030 		JBrowse link
G Tgfb3 transforming growth factor, beta 3 IDA RGD PMID:11002343 RGD:1579866 NCBI chr 6:109,913,757...109,936,217
Ensembl chr 6:109,913,757...109,935,533 		JBrowse link
G Tulp3 TUB like protein 3 ISO MGI:2388066 (MGI:3841503|PMID:19286674) RGD PMID:19286674 MGI:3841503 NCBI chr 4:161,636,084...161,677,807
Ensembl chr 4:161,637,892...161,658,519 		JBrowse link
embryonic skeletal joint morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Axin1 axin 1 ISO MGI:1856035|MGI:1856036 RGD MGI:48782
G Bmp4 bone morphogenetic protein 4 IEA
ISO		 GO_REF:0000107
MGI:103302|MGI:1857137 (MGI:1270933|PMID:9664686)		 Ensembl
RGD		 PMID:9664686 GO_REF:0000107 MGI:1270933 NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740 		JBrowse link
G Bmp7 bone morphogenetic protein 7 ISO MGI:1934010|MGI:88180 (MGI:1270933|PMID:9664686) RGD PMID:9664686 MGI:1270933 NCBI chr 3:170,879,972...170,955,820
Ensembl chr 3:170,879,973...170,955,399 		JBrowse link
G Col2a1 collagen type II alpha 1 chain ISO
IEA		 (PMID:16752401)
GO_REF:0000107		 RGD
Ensembl		 PMID:16752401 GO_REF:0000107 NCBI chr 7:139,454,945...139,484,403
Ensembl chr 7:139,455,242...139,483,997 		JBrowse link
G Hoxa11 homeobox A11 ISO MGI:96193|MGI:96203 (MGI:4867119|PMID:20978074) RGD PMID:20978074 MGI:4867119 NCBI chr 4:82,296,888...82,301,419
Ensembl chr 4:82,298,152...82,300,503
Ensembl chr 4:82,298,152...82,300,503 		JBrowse link
G Hoxc11 homeobox C11 ISO MGI:96172|MGI:96203 (MGI:4867119|PMID:20978074) RGD PMID:20978074 MGI:4867119 NCBI chr 7:144,565,392...144,568,580
Ensembl chr 7:144,565,392...144,567,580 		JBrowse link
G Hoxd11 homeobox D11 ISO MGI:96172|MGI:96193 (MGI:4867119|PMID:20978074) RGD PMID:20978074 MGI:4867119 NCBI chr 3:61,604,256...61,606,874
Ensembl chr 3:61,604,672...61,606,400 		JBrowse link
G Hyal1 hyaluronidase 1 IEA
ISO		 GO_REF:0000107
MGI:2658730 (MGI:3836537|PMID:18772348)		 Ensembl
RGD		 PMID:18772348 GO_REF:0000107 MGI:3836537 NCBI chr 8:116,332,834...116,337,522
Ensembl chr 8:116,332,796...116,335,435 		JBrowse link
G Nog noggin ISO
IEA		 (PMID:16151340)
GO_REF:0000107		 RGD
Ensembl		 PMID:16151340 GO_REF:0000107 NCBI chr10:76,811,759...76,813,386
Ensembl chr10:76,811,759...76,813,386 		JBrowse link
G Osr1 odd-skipped related transcription factor 1 ISO UniProtKB:Q91ZD1 (MGI:4950000|PMID:21262216) RGD PMID:21262216 MGI:4950000 NCBI chr 6:35,314,431...35,321,458
Ensembl chr 6:35,314,444...35,321,667 		JBrowse link
G Osr2 odd-skipped related transciption factor 2 ISO (MGI:4950000|PMID:21262216) RGD PMID:21262216 MGI:4950000 NCBI chr 7:74,047,820...74,055,096
Ensembl chr 7:74,047,814...74,055,256 		JBrowse link
G Shox2 short stature homeobox 2 ISO MGI:3626291 (MGI:3805084|PMID:18514492) RGD PMID:18514492 MGI:3805084 NCBI chr 2:164,118,175...164,126,783
Ensembl chr 2:164,118,191...164,126,783 		JBrowse link
embryonic skeletal limb joint morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctnnb1 catenin beta 1 IEA
ISO		 GO_REF:0000107
UniProtKB:Q91ZD1 (MGI:4950000|PMID:21262216)		 Ensembl
RGD		 PMID:21262216 GO_REF:0000107 MGI:4950000 NCBI chr 8:129,601,511...129,628,378
Ensembl chr 8:129,617,812...129,627,372 		JBrowse link
G Osr1 odd-skipped related transcription factor 1 ISO UniProtKB:Q91ZD1 (MGI:4950000|PMID:21262216) RGD PMID:21262216 MGI:4950000 NCBI chr 6:35,314,431...35,321,458
Ensembl chr 6:35,314,444...35,321,667 		JBrowse link
G Osr2 odd-skipped related transciption factor 2 ISO UniProtKB:Q9WVG7 (MGI:4950000|PMID:21262216) RGD PMID:21262216 MGI:4950000 NCBI chr 7:74,047,820...74,055,096
Ensembl chr 7:74,047,814...74,055,256 		JBrowse link
embryonic skeletal system morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alx1 ALX homeobox 1 ISO
IBA		 MGI:108359 (MGI:1314705|PMID:9847249), (MGI:3604843|PMID:15728667)
PMID:21873635		 RGD PMID:9847249 PMID:15728667, PMID:21873635 MGI:1314705 MGI:3604843, RGD:13792537 NCBI chr 7:44,751,865...44,771,458
Ensembl chr 7:44,751,873...44,771,458 		JBrowse link
G Alx3 ALX homeobox 3 ISO MGI:108359 (MGI:2151109|PMID:11641221), (MGI:3604843|PMID:15728667) RGD PMID:11641221 PMID:15728667 MGI:2151109 MGI:3604843 NCBI chr 2:210,376,510...210,386,928
Ensembl chr 2:210,381,829...210,386,928 		JBrowse link
G Alx4 ALX homeobox 4 ISO MGI:104621|MGI:1277097|MGI:1856069 (MGI:1314705|PMID:9847249), (MGI:2151109|PMID:11641221), (MGI:3604843|PMID:15728667) RGD PMID:9847249 PMID:11641221 PMID:15728667 MGI:1314705 MGI:2151109 MGI:3604843 NCBI chr 3:82,548,959...82,585,531
Ensembl chr 3:82,548,959...82,585,531 		JBrowse link
G Asxl2 ASXL transcriptional regulator 2 ISO MGI:3840841 (MGI:3840399|PMID:19270745) RGD PMID:19270745 MGI:3840399 NCBI chr 6:27,835,346...27,919,285
Ensembl chr 6:27,887,797...27,915,563 		JBrowse link
G Bmi1 BMI1 proto-oncogene, polycomb ring finger ISO MGI:99161 (MGI:1932296|PMID:11290297) RGD PMID:11290297 MGI:1932296 NCBI chr17:85,360,439...85,370,283
Ensembl chr17:85,364,483...85,368,208 		JBrowse link
G Bmp4 bone morphogenetic protein 4 ISO MGI:2158495 (MGI:3640733|PMID:16712836) RGD PMID:16712836 MGI:3640733 NCBI chr15:20,776,060...20,791,013
Ensembl chr15:20,776,054...20,822,740 		JBrowse link
G Chst11 carbohydrate sulfotransferase 11 ISO MGI:3768254 (MGI:3767479|PMID:16079159) RGD PMID:16079159 MGI:3767479 NCBI chr 7:26,641,856...26,890,503
Ensembl chr 7:26,645,422...26,859,716 		JBrowse link
G Col11a1 collagen type XI alpha 1 chain ISO MGI:1856399 (MGI:53676|PMID:4100752) RGD PMID:4100752 MGI:53676 NCBI chr 2:216,863,423...217,056,523
Ensembl chr 2:216,863,428...217,056,523 		JBrowse link
G Dlg1 discs large MAGUK scaffold protein 1 IEA
ISO		 GO_REF:0000107
MGI:2680670 (MGI:1930428|PMID:11238884)		 Ensembl
RGD		 PMID:11238884 GO_REF:0000107 MGI:1930428 NCBI chr11:72,164,566...72,378,895
Ensembl chr11:72,163,749...72,378,895 		JBrowse link
G Dscaml1 DS cell adhesion molecule-like 1 ISO (PMID:12051741) RGD PMID:12051741 NCBI chr 8:49,733,835...50,056,115
Ensembl chr 8:49,737,798...50,055,560 		JBrowse link
G Dync2i1 dynein 2 intermediate chain 1 ISO (PMID:23910462) RGD PMID:23910462 NCBI chr 6:144,069,077...144,124,975
Ensembl chr 6:144,069,022...144,123,729 		JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 ISO MGI:2150426 (MGI:1344210|PMID:10471511) RGD PMID:10471511 MGI:1344210 NCBI chr 5:4,275,728...4,495,525
Ensembl chr 5:4,373,626...4,513,142 		JBrowse link
G Flvcr1 FLVCR heme transporter 1 ISO MGI:5474636 (MGI:5471193|PMID:23187127) RGD PMID:23187127 MGI:5471193 NCBI chr13:109,624,167...109,629,609
Ensembl chr13:109,578,074...109,629,482 		JBrowse link
G Foxc2 forkhead box C2 ISO MGI:1857740 (MGI:1339313|PMID:9409679) RGD PMID:9409679 MGI:1339313 NCBI chr19:53,044,379...53,047,081
Ensembl chr19:53,044,379...53,047,081 		JBrowse link
G Fuz fuzzy planar cell polarity protein ISS
ISO		 GO_REF:0000024
(MGI:4438317|PMID:19767740), (MGI:5296432|PMID:21935430), (MGI:5498583|PMID:23806618)		 UniProt
RGD		 PMID:19767740 PMID:21935430 PMID:23806618 GO_REF:0000024 MGI:4438317 MGI:5296432 MGI:5498583 NCBI chr 1:100,891,832...100,896,811
Ensembl chr 1:100,891,866...100,896,807 		JBrowse link
G Gli3 GLI family zinc finger 3 ISO MGI:1277234 (MGI:3604843|PMID:15728667) RGD PMID:15728667 MGI:3604843 NCBI chr17:52,294,942...52,569,036
Ensembl chr17:52,294,942...52,569,036 		JBrowse link
G Gsc goosecoid homeobox ISO MGI:1857496|MGI:1857726 (MGI:76246|PMID:7555726), (MGI:76955|PMID:7555718) RGD PMID:7555718 PMID:7555726 MGI:76246 MGI:76955 NCBI chr 6:128,147,181...128,149,220
Ensembl chr 6:128,147,181...128,149,220 		JBrowse link
G Hoxa2 homeobox A2 ISO MGI:102778 (MGI:3525808|PMID:15634706) RGD PMID:15634706 MGI:3525808 NCBI chr 4:82,130,441...82,134,846
Ensembl chr 4:82,131,329...82,133,605 		JBrowse link
G Hoxa3 homeobox A3 ISO
IBA		 MGI:96184|MGI:96207 (MGI:1195045|PMID:9441667)
PMID:21873635		 RGD PMID:9441667, PMID:21873635 MGI:1195045, RGD:13792537 NCBI chr 4:82,137,802...82,181,836
Ensembl chr 4:82,138,683...82,141,385 		JBrowse link
G Hoxa4 homeo box A4 ISO
IBA		 MGI:2150391|MGI:96185|MGI:96208 (MGI:67413|PMID:7918106), (MGI:74948|PMID:7628700)
PMID:21873635		 RGD PMID:7628700 PMID:7918106, PMID:21873635 MGI:67413 MGI:74948, RGD:13792537 NCBI chr 4:82,158,234...82,160,317
Ensembl chr 4:82,158,892...82,160,240 		JBrowse link
G Hoxa5 homeo box A5 ISO MGI:2150397|MGI:3723623 (MGI:1203259|PMID:9603431), (MGI:3723390|PMID:17417799), (MGI:63693|PMID:7901120) RGD PMID:7901120 PMID:9603431 PMID:17417799 MGI:1203259 MGI:3723390 MGI:63693
G Hoxa6 homeobox A6 ISO MGI:2150392 (MGI:67413|PMID:7918106) RGD PMID:7918106 MGI:67413 NCBI chr 4:82,173,478...82,183,597
Ensembl chr 4:82,173,293...82,263,302 		JBrowse link
G Hoxa7 homeobox A7 ISO MGI:96188 (MGI:1313067|PMID:9784603) RGD PMID:9784603 MGI:1313067 NCBI chr 4:82,184,299...82,187,890
Ensembl chr 4:82,183,196...82,186,190 		JBrowse link
G Hoxa9 homeobox A9 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G Hoxb1 homeo box B1 ISO MGI:96183|MGI:96184|MGI:96185|MGI:96186|MGI:96187|MGI:96188|MGI:96189|MGI:96190 (MGI:1859107|PMID:10885747) RGD PMID:10885747 MGI:1859107 NCBI chr10:84,214,358...84,215,812
Ensembl chr10:84,214,358...84,215,687 		JBrowse link
G Hoxb2 homeobox B2 ISO MGI:96182|MGI:96184|MGI:96185|MGI:96186|MGI:96187|MGI:96188|MGI:96189|MGI:96190 (MGI:1859107|PMID:10885747) RGD PMID:10885747 MGI:1859107 NCBI chr10:84,200,859...84,203,065
Ensembl chr10:84,200,880...84,202,688 		JBrowse link
G Hoxb3 homeo box B3 ISO
IBA		 MGI:2151773|MGI:96175|MGI:96182|MGI:96183|MGI:96185|MGI:96186|MGI:96187|MGI:96188|MGI:96189|MGI:96190|MGI:96207 (MGI:1195045|PMID:9441667), (MGI:1859107|PMID:10885747)
PMID:21873635		 RGD PMID:9441667 PMID:10885747, PMID:21873635 MGI:1195045 MGI:1859107, RGD:13792537 NCBI chr10:84,170,629...84,196,823
Ensembl chr10:84,182,118...84,195,796 		JBrowse link
G Hoxb4 homeo box B4 ISO
IBA		 MGI:96176|MGI:96183|MGI:96184|MGI:96186|MGI:96187|MGI:96188|MGI:96189|MGI:96190 (MGI:1859107|PMID:10885747), (MGI:74948|PMID:7628700)
PMID:21873635		 RGD PMID:7628700 PMID:10885747, PMID:21873635 MGI:1859107 MGI:74948, RGD:13792537 NCBI chr10:84,167,331...84,169,913
Ensembl chr10:84,167,331...84,169,907 		JBrowse link
G Hoxb5 homeo box B5 ISO MGI:96182|MGI:96183|MGI:96184|MGI:96185|MGI:96187|MGI:96188|MGI:96189|MGI:96190 (MGI:1859107|PMID:10885747), (MGI:70296|PMID:7828847) RGD PMID:7828847 PMID:10885747 MGI:1859107 MGI:70296 NCBI chr10:84,152,152...84,154,360
Ensembl chr10:84,152,152...84,154,360 		JBrowse link
G Hoxb6 homeo box B6 ISO MGI:96182|MGI:96183|MGI:96184|MGI:96185|MGI:96186|MGI:96188|MGI:96189|MGI:96190 (MGI:1859107|PMID:10885747) RGD PMID:10885747 MGI:1859107 NCBI chr10:84,147,331...84,150,238
Ensembl chr10:84,147,836...84,149,600 		JBrowse link
G Hoxb7 homeo box B7 ISO MGI:2150401|MGI:96179|MGI:96182|MGI:96183|MGI:96184|MGI:96185|MGI:96186|MGI:96187|MGI:96189|MGI:96190 (MGI:1313067|PMID:9784603), (MGI:1859107|PMID:10885747) RGD PMID:9784603 PMID:10885747 MGI:1313067 MGI:1859107 NCBI chr10:84,135,224...84,138,642
Ensembl chr10:84,135,116...84,138,637 		JBrowse link
G Hoxb8 homeo box B8 IEA
ISO		 GO_REF:0000107
MGI:1934178|MGI:96182|MGI:96183|MGI:96184|MGI:96185|MGI:96186|MGI:96187|MGI:96188|MGI:96190 (MGI:1349283|PMID:10559485), (MGI:1859107|PMID:10885747)		 Ensembl
RGD		 PMID:10559485 PMID:10885747 GO_REF:0000107 MGI:1349283 MGI:1859107 NCBI chr10:84,131,484...84,133,874
Ensembl chr10:84,131,495...84,133,246 		JBrowse link
G Hoxb9 homeo box B9 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:84,119,772...84,124,963
Ensembl chr10:84,119,884...84,123,390 		JBrowse link
G Hoxc4 homeo box C4 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 7:144,646,605...144,652,589
Ensembl chr 7:144,647,587...144,650,129 		JBrowse link
G Hoxc9 homeobox C9 ISO MGI:2150685 (MGI:73980|PMID:7547473) RGD PMID:7547473 MGI:73980 NCBI chr 7:144,592,462...144,598,807
Ensembl chr 7:144,595,960...144,598,632 		JBrowse link
G Hoxd10 homeo box D10 ISO MGI:96210 (MGI:1350864|PMID:10642795) RGD PMID:10642795 MGI:1350864 NCBI chr 3:61,614,133...61,617,342
Ensembl chr 3:61,613,774...61,617,367 		JBrowse link
G Hoxd3 homeo box D3 IEA
IBA
ISO		 GO_REF:0000107
PMID:21873635
MGI:1857959|MGI:96175 (MGI:63793|PMID:7910549), (MGI:67616|PMID:7913519)		 Ensembl
RGD		 PMID:7910549 PMID:7913519, PMID:21873635 GO_REF:0000107 MGI:63793 MGI:67616, RGD:13792537 NCBI chr 3:61,650,569...61,670,285
Ensembl chr 3:61,658,245...61,670,282 		JBrowse link
G Hoxd4 homeo box D4 ISO
IBA		 MGI:2151488|MGI:96176 (MGI:72992|PMID:7750651), (MGI:74948|PMID:7628700)
PMID:21873635		 RGD PMID:7628700 PMID:7750651, PMID:21873635 MGI:72992 MGI:74948, RGD:13792537 NCBI chr 3:61,634,005...61,653,581
Ensembl chr 3:61,634,005...61,651,056 		JBrowse link
G Hoxd9 homeo box D9 IEA
IBA
ISO		 GO_REF:0000107
PMID:21873635
MGI:96202 (MGI:1350864|PMID:10642795)		 Ensembl
RGD		 PMID:10642795, PMID:21873635 GO_REF:0000107 MGI:1350864, RGD:13792537 NCBI chr 3:61,620,192...61,622,360
Ensembl chr 3:61,620,192...61,622,359 		JBrowse link
G Hspg2 heparan sulfate proteoglycan 2 ISO MGI:1934892 (MGI:1349497|PMID:10579729) RGD PMID:10579729 MGI:1349497 NCBI chr 5:155,812,096...155,913,751 JBrowse link
G LOC103689925 homeobox protein Hox-A9 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:82,191,804...82,199,025
Ensembl chr 4:82,192,963...82,194,927 		JBrowse link
G LOC103692128 homeobox protein Hox-A9 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 4:82,277,599...82,284,820
Ensembl chr 4:82,192,963...82,194,927
Ensembl chr 4:82,192,963...82,194,927 		JBrowse link
G LOC108348320 homeobox protein Hox-A3 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G Mdfi MyoD family inhibitor ISO MGI:2155446 (MGI:1312999|PMID:9799236) RGD PMID:9799236 MGI:1312999 NCBI chr 9:15,166,118...15,184,469
Ensembl chr 9:15,166,118...15,184,468 		JBrowse link
G Mef2c myocyte enhancer factor 2C ISO MGI:3603182 (MGI:3714538|PMID:17420000) RGD PMID:17420000 MGI:3714538 NCBI chr 2:11,658,534...11,822,788
Ensembl chr 2:11,658,568...11,822,787 		JBrowse link
G Megf8 multiple EGF-like-domains 8 IEA
ISO
ISS		 GO_REF:0000107
(MGI:5551355|PMID:24052814)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:24052814 GO_REF:0000024 GO_REF:0000107 MGI:5551355 NCBI chr 1:82,184,671...82,234,045
Ensembl chr 1:82,185,034...82,234,045 		JBrowse link
G Men1 menin 1 ISO MGI:2683274|MGI:3573783 (MGI:3763871|PMID:17927973) RGD PMID:17927973 MGI:3763871 NCBI chr 1:221,704,394...221,710,343
Ensembl chr 1:221,704,493...221,710,331 		JBrowse link
G Mycn MYCN proto-oncogene, bHLH transcription factor IEA
ISO		 GO_REF:0000107
(MGI:3790402|PMID:17360777)		 Ensembl
RGD		 PMID:17360777 GO_REF:0000107 MGI:3790402 NCBI chr 6:38,222,554...38,228,419
Ensembl chr 6:38,222,555...38,228,379 		JBrowse link
G Myf5 myogenic factor 5 ISO MGI:1857219 (MGI:1861090|PMID:10929709) RGD PMID:10929709 MGI:1861090 NCBI chr 7:49,729,533...49,732,974
Ensembl chr 7:49,729,533...49,732,764 		JBrowse link
G Osr2 odd-skipped related transciption factor 2 ISS
ISO		 GO_REF:0000024
MGI:3033240 (MGI:3513962|PMID:15175245)		 UniProt
RGD		 PMID:15175245 GO_REF:0000024 MGI:3513962 NCBI chr 7:74,047,820...74,055,096
Ensembl chr 7:74,047,814...74,055,256 		JBrowse link
G Pcgf2 polycomb group ring finger 2 ISO MGI:88174 (MGI:1932296|PMID:11290297) RGD PMID:11290297 MGI:1932296 NCBI chr10:85,631,829...85,642,591
Ensembl chr10:85,632,819...85,636,902 		JBrowse link
G Pdgfra platelet derived growth factor receptor alpha ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr14:35,527,926...35,581,130
Ensembl chr14:35,527,927...35,581,031 		JBrowse link
G Prrx1 paired related homeobox 1 ISO MGI:1857640|MGI:98218 (MGI:1306737|PMID:9729491), (MGI:1321048|PMID:9876178), (MGI:2149056|PMID:11532916), (MGI:73363|PMID:7758948) RGD PMID:7758948 PMID:9729491 PMID:9876178 PMID:11532916 MGI:1306737 MGI:1321048 MGI:2149056 MGI:73363 NCBI chr13:81,147,038...81,215,559
Ensembl chr13:81,147,348...81,214,546 		JBrowse link
G Prrx2 paired related homeobox 2 ISO MGI:97712 (MGI:1306737|PMID:9729491), (MGI:1321048|PMID:9876178), (MGI:2149056|PMID:11532916) RGD PMID:9729491 PMID:9876178 PMID:11532916 MGI:1306737 MGI:1321048 MGI:2149056 NCBI chr 3:9,681,871...9,718,051
Ensembl chr 3:9,681,871...9,718,051 		JBrowse link
G Satb2 SATB homeobox 2 ISO MGI:3692768|MGI:3695425 (MGI:3692344|PMID:16751105), (MGI:3695004|PMID:16960803) RGD PMID:16751105 PMID:16960803 MGI:3692344 MGI:3695004 NCBI chr 9:63,456,877...63,642,193
Ensembl chr 9:63,456,783...63,641,400 		JBrowse link
G Six1 SIX homeobox 1 ISO MGI:106034 (MGI:3578604|PMID:15788460) RGD PMID:15788460 MGI:3578604 NCBI chr 6:95,929,060...95,934,296
Ensembl chr 6:95,929,060...95,934,296 		JBrowse link
G Six2 SIX homeobox 2 ISO MGI:96174 (MGI:3525808|PMID:15634706) RGD PMID:15634706 MGI:3525808 NCBI chr 6:8,952,572...8,955,893
Ensembl chr 6:8,952,572...8,956,276 		JBrowse link
G Six4 SIX homeobox 4 ISO MGI:102780 (MGI:3578604|PMID:15788460) RGD PMID:15788460 MGI:3578604 NCBI chr 6:95,984,868...95,999,709
Ensembl chr 6:95,984,868...95,998,529 		JBrowse link
G Sox11 SRY-box transcription factor 11 ISS
ISO		 GO_REF:0000024
(MGI:3052265|PMID:15254231)		 UniProt
RGD		 PMID:15254231 GO_REF:0000024 MGI:3052265 NCBI chr 6:46,629,967...46,631,988
Ensembl chr 6:46,629,974...46,631,983 		JBrowse link
G Tbx15 T-box transcription factor 15 ISO MGI:1856015|MGI:95729 (MGI:3604843|PMID:15728667) RGD PMID:15728667 MGI:3604843 NCBI chr 2:201,289,042...201,390,752
Ensembl chr 2:201,289,357...201,390,745 		JBrowse link
G Twist1 twist family bHLH transcription factor 1 ISO MGI:3038818 (MGI:3042355|PMID:15030764) RGD PMID:15030764 MGI:3042355 NCBI chr 6:53,401,241...53,403,235
Ensembl chr 6:53,401,109...53,403,214 		JBrowse link
G Wnt9a Wnt family member 9A ISO MGI:3701350 (MGI:3701031|PMID:16818445) RGD PMID:16818445 MGI:3701031 NCBI chr10:45,659,045...45,686,103
Ensembl chr10:45,659,143...45,681,393 		JBrowse link
G Zeb1 zinc finger E-box binding homeobox 1 IEA
ISO		 GO_REF:0000107
MGI:1857799 (MGI:1195626|PMID:9389660)		 Ensembl
RGD		 PMID:9389660 GO_REF:0000107 MGI:1195626 NCBI chr17:54,656,627...54,714,920
Ensembl chr17:54,658,463...54,714,914 		JBrowse link
embryonic viscerocranium morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chst11 carbohydrate sulfotransferase 11 ISO MGI:3768254 (MGI:3767479|PMID:16079159) RGD PMID:16079159 MGI:3767479 NCBI chr 7:26,641,856...26,890,503
Ensembl chr 7:26,645,422...26,859,716 		JBrowse link
G Foxc2 forkhead box C2 ISO MGI:1857740 (MGI:1339313|PMID:9409679) RGD PMID:9409679 MGI:1339313 NCBI chr19:53,044,379...53,047,081
Ensembl chr19:53,044,379...53,047,081 		JBrowse link
G Hoxa2 homeobox A2 ISO MGI:2385711 (MGI:3608156|PMID:16221728) RGD PMID:16221728 MGI:3608156 NCBI chr 4:82,130,441...82,134,846
Ensembl chr 4:82,131,329...82,133,605 		JBrowse link
G Lhx1 LIM homeobox 1 ISS
ISO		 GO_REF:0000024
(MGI:3777712|PMID:14695376)		 UniProt
RGD		 PMID:14695376 GO_REF:0000024 MGI:3777712 NCBI chr10:71,843,991...71,849,293
Ensembl chr10:71,843,991...71,849,293 		JBrowse link
G Mef2c myocyte enhancer factor 2C ISO MGI:3603182 (MGI:3714538|PMID:17420000) RGD PMID:17420000 MGI:3714538 NCBI chr 2:11,658,534...11,822,788
Ensembl chr 2:11,658,568...11,822,787 		JBrowse link
G Mthfd1l methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 1-like ISO (MGI:5468075|PMID:23267094) RGD PMID:23267094 MGI:5468075 NCBI chr 1:40,529,092...40,719,232
Ensembl chr 1:40,529,045...40,719,391 		JBrowse link
G Ndst1 N-deacetylase and N-sulfotransferase 1 ISO MGI:3589383 (MGI:3588476|PMID:16020517) RGD PMID:16020517 MGI:3588476 NCBI chr18:55,951,497...56,014,107
Ensembl chr18:55,955,389...55,992,885 		JBrowse link
G Nipbl NIPBL, cohesin loading factor ISO
IBA		 MGI:4332250 (MGI:4367301|PMID:19763162)
PMID:21873635		 RGD PMID:19763162, PMID:21873635 MGI:4367301, RGD:13792537 NCBI chr 2:57,508,830...57,676,197
Ensembl chr 2:57,509,428...57,600,820 		JBrowse link
G Rdh10 retinol dehydrogenase 10 ISO (MGI:3709664|PMID:17473173) RGD PMID:17473173 MGI:3709664 NCBI chr 5:2,605,265...2,631,905
Ensembl chr 5:2,603,505...2,632,030 		JBrowse link
G Tbx1 T-box transcription factor 1 ISO
ISS		 (PMID:14585638)
GO_REF:0000024		 RGD
UniProt		 PMID:14585638 GO_REF:0000024 NCBI chr11:86,552,022...86,561,647
Ensembl chr11:86,552,022...86,560,969 		JBrowse link
heart looping term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07030901.1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr10:108,387,789...108,393,442 JBrowse link
G Ahi1 Abelson helper integration site 1 ISS
ISO		 GO_REF:0000024
UniProtKB:F8W3V6 (MGI:5306539|PMID:21959375)		 UniProt
RGD		 PMID:21959375 GO_REF:0000024 MGI:5306539 NCBI chr 1:16,478,127...16,601,769
Ensembl chr 1:16,478,127...16,601,769 		JBrowse link
G Arl13b ADP-ribosylation factor like GTPase 13B ISO MGI:3578151 (MGI:5430243|PMID:22554696) RGD PMID:22554696 MGI:5430243 NCBI chr 7:1,122,567...1,188,209
Ensembl chr 7:1,122,567...1,188,209 		JBrowse link
G C2cd3 C2 domain containing 3 centriole elongation regulator ISO (MGI:3821640|PMID:19004860) RGD PMID:19004860 MGI:3821640 NCBI chr 1:165,382,279...165,480,088
Ensembl chr 1:165,382,690...165,479,655 		JBrowse link
G Ccdc103 coiled-coil domain containing 103 ISO (PMID:22581229) RGD PMID:22581229 NCBI chr10:90,984,213...90,987,829
Ensembl chr10:90,984,227...90,987,823 		JBrowse link
G Ccdc39 coiled-coil domain containing 39 ISO (PMID:22693285) RGD PMID:22693285 NCBI chr 2:120,278,605...120,367,829
Ensembl chr 2:120,278,605...120,316,600 		JBrowse link
G Ccdc40 coiled-coil domain containing 40 ISO
IBA		 (PMID:22693285)
PMID:21873635		 RGD PMID:22693285, PMID:21873635 RGD:13792537 NCBI chr10:108,055,270...108,393,408
Ensembl chr10:108,340,240...108,372,862 		JBrowse link
G Cfc1 cripto, FRL-1, cryptic family 1 ISO MGI:2179530 (MGI:1346729|PMID:10521397) RGD PMID:10521397 MGI:1346729 NCBI chr 9:41,045,352...41,051,979
Ensembl chr 9:41,045,363...41,052,024 		JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 ISO MGI:2176158 (MGI:3574743|PMID:15750185) RGD PMID:15750185 MGI:3574743 NCBI chr 1:12,823,363...12,825,806
Ensembl chr 1:12,823,363...12,825,786 		JBrowse link
G Cluap1 clusterin associated protein 1 ISO
IEA		 MGI:5523142 (MGI:5509110|PMID:23742838)
GO_REF:0000107		 RGD
Ensembl		 PMID:23742838 GO_REF:0000107 MGI:5509110 NCBI chr10:11,847,058...11,878,792
Ensembl chr10:11,847,102...11,878,792 		JBrowse link
G Dll1 delta like canonical Notch ligand 1 IEA
ISO		 GO_REF:0000107
(MGI:2661305|PMID:12730124)		 Ensembl
RGD		 PMID:12730124 GO_REF:0000107 MGI:2661305 NCBI chr 1:57,318,621...57,326,732
Ensembl chr 1:57,318,708...57,327,379 		JBrowse link
G Dnaaf1 dynein, axonemal, assembly factor 1 IEA
ISO		 GO_REF:0000107
(PMID:19944400), (PMID:19944405)		 Ensembl
RGD		 PMID:19944400 PMID:19944405 GO_REF:0000107 NCBI chr19:52,217,427...52,245,930
Ensembl chr19:52,217,984...52,245,929 		JBrowse link
G Eng endoglin ISO (MGI:1337912|PMID:10348742), (MGI:4368063|PMID:19703439) RGD PMID:10348742 PMID:19703439 MGI:1337912 MGI:4368063 NCBI chr 3:11,679,530...11,717,486
Ensembl chr 3:11,679,530...11,717,485 		JBrowse link
G Eomes eomesodermin IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 8:127,144,367...127,152,618
Ensembl chr 8:127,144,903...127,151,493 		JBrowse link
G Fgf8 fibroblast growth factor 8 ISO MGI:1857843 (MGI:1340887|PMID:10411502) RGD PMID:10411502 MGI:1340887 NCBI chr 1:265,492,949...265,498,965
Ensembl chr 1:265,493,124...265,498,831 		JBrowse link
G Folr1 folate receptor alpha ISO (MGI:3721767|PMID:17286298) RGD PMID:17286298 MGI:3721767 NCBI chr 1:166,934,457...166,945,864
Ensembl chr 1:166,934,460...166,943,592 		JBrowse link
G Foxh1 forkhead box H1 ISO (MGI:3055632|PMID:15363409) RGD PMID:15363409 MGI:3055632 NCBI chr 7:117,730,307...117,733,076
Ensembl chr 7:117,730,307...117,732,387 		JBrowse link
G Gata4 GATA binding protein 4 ISO (MGI:3052615|PMID:15310850) RGD PMID:15310850 MGI:3052615 NCBI chr15:46,386,703...46,458,679
Ensembl chr15:46,386,712...46,432,965 		JBrowse link
G Gja1 gap junction protein, alpha 1 ISO MGI:1857177 (MGI:1201220|PMID:9486664) RGD PMID:9486664 MGI:1201220 NCBI chr20:37,876,650...37,889,097
Ensembl chr20:37,876,650...37,889,089 		JBrowse link
G Hand1 heart and neural crest derivatives expressed 1 ISO MGI:2153823 (MGI:1197800|PMID:9500551) RGD PMID:9500551 MGI:1197800 NCBI chr10:43,250,729...43,253,296
Ensembl chr10:43,250,745...43,253,296 		JBrowse link
G Hand2 heart and neural crest derivatives expressed 2 IEA
ISO		 GO_REF:0000107
MGI:1857639 (MGI:892134|PMID:9171826)		 Ensembl
RGD		 PMID:9171826 GO_REF:0000107 MGI:892134 NCBI chr16:36,371,489...36,373,551
Ensembl chr16:36,371,489...36,373,546 		JBrowse link
G Hif1a hypoxia inducible factor 1 subunit alpha IEA
ISO		 GO_REF:0000107
MGI:2179429 (MGI:3607736|PMID:14659802)		 Ensembl
RGD		 PMID:14659802 GO_REF:0000107 MGI:3607736 NCBI chr 6:96,810,868...96,856,303
Ensembl chr 6:96,810,907...96,856,052 		JBrowse link
G Ift172 intraflagellar transport 172 ISO MGI:3829198 (MGI:3828200|PMID:18930042) RGD PMID:18930042 MGI:3828200 NCBI chr 6:26,390,686...26,485,459 JBrowse link
G Ift52 intraflagellar transport 52 ISO (MGI:3579954|PMID:15930098) RGD PMID:15930098 MGI:3579954 NCBI chr 3:159,388,868...159,413,358
Ensembl chr 3:159,392,193...159,413,575 		JBrowse link
G Ift57 intraflagellar transport 57 ISO MGI:3707373 (MGI:3703110|PMID:17027958) RGD PMID:17027958 MGI:3703110 NCBI chr11:53,664,638...53,731,779
Ensembl chr11:53,664,638...53,731,779 		JBrowse link
G Ihh Indian hedgehog signaling molecule ISO (MGI:5142377|PMID:11517919) RGD PMID:11517919 MGI:5142377 NCBI chr 9:82,208,223...82,214,440
Ensembl chr 9:82,208,223...82,214,440 		JBrowse link
G Kdm2a lysine demethylase 2A ISO (MGI:5615026|PMID:25463925) RGD PMID:25463925 MGI:5615026 NCBI chr 1:219,566,130...219,642,294
Ensembl chr 1:219,566,156...219,640,294 		JBrowse link
G Kif3a kinesin family member 3a ISO MGI:2181727 (MGI:1337724|PMID:10330409) RGD PMID:10330409 MGI:1337724 NCBI chr10:38,918,705...38,953,958
Ensembl chr10:38,918,748...38,952,785 		JBrowse link
G Lbx1 ladybird homeobox 1 ISO MGI:2386948 (MGI:3628723|PMID:12522123) RGD PMID:12522123 MGI:3628723 NCBI chr 1:264,973,315...264,975,132
Ensembl chr 1:264,973,315...264,975,132 		JBrowse link
G Lrp6 LDL receptor related protein 6 ISO MGI:98958 (MGI:4413372|PMID:19795512) RGD PMID:19795512 MGI:4413372 NCBI chr 4:168,194,054...168,323,962
Ensembl chr 4:168,194,927...168,323,751 		JBrowse link
G Mef2c myocyte enhancer factor 2C ISS
ISO		 GO_REF:0000024
(MGI:3830899|PMID:16680724)		 UniProt
RGD		 PMID:16680724 GO_REF:0000024 MGI:3830899 NCBI chr 2:11,658,534...11,822,788
Ensembl chr 2:11,658,568...11,822,787 		JBrowse link
G Mesp1 mesoderm posterior bHLH transcription factor 1 ISO (MGI:1339460|PMID:10393122) RGD PMID:10393122 MGI:1339460 NCBI chr 1:141,532,390...141,533,908
Ensembl chr 1:141,532,390...141,533,908 		JBrowse link
G Mib1 MIB E3 ubiquitin protein ligase 1 ISO MGI:3603514 (MGI:3603078|PMID:16000382) RGD PMID:16000382 MGI:3603078 NCBI chr18:1,970,914...2,094,920
Ensembl chr18:1,970,914...2,094,920 		JBrowse link
G Mical2 microtubule associated monooxygenase, calponin and LIM domain containing 2 ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 1:177,048,607...177,173,729
Ensembl chr 1:177,048,655...177,173,995 		JBrowse link
G Nkx2-5 NK2 homeobox 5 IEA
ISO		 GO_REF:0000107
MGI:1927227 (MGI:3773736|PMID:16510504), (MGI:74918|PMID:7628699), (MGI:892786|PMID:9192865)		 Ensembl
RGD		 PMID:7628699 PMID:9192865 PMID:16510504 GO_REF:0000107 MGI:3773736 MGI:74918 MGI:892786 NCBI chr10:16,635,989...16,638,758
Ensembl chr10:16,635,989...16,638,764 		JBrowse link
G Nodal nodal growth differentiation factor ISO MGI:106676 (MGI:3624254|PMID:16496285) RGD PMID:16496285 MGI:3624254 NCBI chr20:31,035,729...31,044,096
Ensembl chr20:31,035,729...31,044,096 		JBrowse link
G Notch1 notch receptor 1 ISO UniProtKB:O35516 (MGI:2661305|PMID:12730124) RGD PMID:12730124 MGI:2661305 NCBI chr 3:3,905,562...3,951,015
Ensembl chr 3:3,905,453...3,951,025 		JBrowse link
G Notch2 notch receptor 2 IEA
ISO		 GO_REF:0000107
UniProtKB:Q01705 (MGI:2661305|PMID:12730124)		 Ensembl
RGD		 PMID:12730124 GO_REF:0000107 MGI:2661305 NCBI chr 2:200,187,184...200,320,403
Ensembl chr 2:200,187,179...200,320,215 		JBrowse link
G Noto notochord homeobox ISO MGI:3053092 (MGI:5646191|PMID:17884984) RGD PMID:17884984 MGI:5646191 NCBI chr 4:117,206,355...117,210,856
Ensembl chr 4:117,206,355...117,210,856 		JBrowse link
G Nphp3 nephrocystin 3 ISO (PMID:18371931), (PMID:20007846) RGD PMID:18371931 PMID:20007846 NCBI chr 8:112,526,553...112,575,745
Ensembl chr 8:112,526,553...112,575,745 		JBrowse link
G Ovol2 ovo-like zinc finger 2 ISO MGI:3777011 (MGI:3776202|PMID:17573777) RGD PMID:17573777 MGI:3776202 NCBI chr 3:138,433,990...138,464,511
Ensembl chr 3:138,433,990...138,462,063 		JBrowse link
G Pkd2 polycystin 2, transient receptor potential cation channel ISO (PMID:21719175) RGD PMID:21719175 NCBI chr14:6,602,004...6,645,257
Ensembl chr14:6,602,004...6,645,257 		JBrowse link
G Psen1 presenilin 1 ISO MGI:109284 (MGI:1347695|PMID:10557208) RGD PMID:10557208 MGI:1347695 NCBI chr 6:107,169,514...107,221,000
Ensembl chr 6:107,169,528...107,216,798 		JBrowse link
G Shh sonic hedgehog signaling molecule IEA
ISO		 GO_REF:0000107
MGI:1857796 (MGI:1340887|PMID:10411502), (MGI:1346236|PMID:10500184), (MGI:5142377|PMID:11517919)		 Ensembl
RGD		 PMID:10411502 PMID:10500184 PMID:11517919 GO_REF:0000107 MGI:1340887 MGI:1346236 MGI:5142377 NCBI chr 4:718,538...727,691
Ensembl chr 4:718,538...727,691 		JBrowse link
G Smad3 SMAD family member 3 ISO MGI:108051 (MGI:3618021|PMID:15183723) RGD PMID:15183723 MGI:3618021 NCBI chr 8:68,569,530...68,678,349
Ensembl chr 8:68,569,530...68,678,349 		JBrowse link
G Smo smoothened, frizzled class receptor IEA
ISO
ISS		 GO_REF:0000107
(MGI:5142377|PMID:11517919)
GO_REF:0000024		 Ensembl
RGD
UniProt		 PMID:11517919 GO_REF:0000024 GO_REF:0000107 MGI:5142377 NCBI chr 4:57,019,941...57,041,779
Ensembl chr 4:57,019,941...57,042,770 		JBrowse link
G Sox17 SRY-box transcription factor 17 ISO MGI:2179440 (MGI:3716256|PMID:17610846), (MGI:3716378|PMID:17655922) RGD PMID:17610846 PMID:17655922 MGI:3716256 MGI:3716378 NCBI chr 5:14,890,318...14,895,907
Ensembl chr 5:14,890,408...14,895,907 		JBrowse link
G Srf serum response factor ISO MGI:2385465|MGI:2386742 (MGI:3603734|PMID:15929941) RGD PMID:15929941 MGI:3603734 NCBI chr 9:16,737,637...16,747,226
Ensembl chr 9:16,737,642...16,747,225 		JBrowse link
G Stil STIL, centriolar assembly protein ISO MGI:2152962 (MGI:1339521|PMID:10385121) RGD PMID:10385121 MGI:1339521 NCBI chr 5:133,819,302...133,851,362
Ensembl chr 5:133,819,726...133,851,416 		JBrowse link
G Sufu SUFU negative regulator of hedgehog signaling ISO MGI:3512046 (MGI:3604917|PMID:16155214) RGD PMID:16155214 MGI:3604917 NCBI chr 1:266,143,766...266,241,742
Ensembl chr 1:266,143,818...266,239,016 		JBrowse link
G Tbr1 T-box brain transcription factor 1 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:47,677,720...47,685,902
Ensembl chr 3:47,677,720...47,685,902 		JBrowse link
G Tbx20 T-box transcription factor 20 ISO
IBA		 MGI:3579849|MGI:3580099 (MGI:3578601|PMID:15843407), (MGI:3579960|PMID:15901664), (MGI:3604925|PMID:15843409)
PMID:21873635		 RGD PMID:15843407 PMID:15843409 PMID:15901664, PMID:21873635 MGI:3578601 MGI:3579960 MGI:3604925, RGD:13792537 NCBI chr 8:25,849,394...25,904,570
Ensembl chr 8:25,850,962...25,904,570 		JBrowse link
G Tbx21 T-box transcription factor 21 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr10:85,032,799...85,049,331
Ensembl chr10:85,032,799...85,049,331 		JBrowse link
G Tbx22 T-box transcription factor 22 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr  X:78,731,738...78,782,542
Ensembl chr  X:78,769,419...78,782,542 		JBrowse link
G Tbx3 T-box transcription factor 3 ISO
IBA		 MGI:2655214|MGI:3769504 (MGI:3769096|PMID:17460765), (MGI:4412356|PMID:18723448)
PMID:21873635		 RGD PMID:17460765 PMID:18723448, PMID:21873635 MGI:3769096 MGI:4412356, RGD:13792537 NCBI chr12:42,479,518...42,494,588
Ensembl chr12:42,480,560...42,492,526 		JBrowse link
G Tbx6 T-box transcription factor 6 IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:198,214,797...198,218,706
Ensembl chr 1:198,214,797...198,218,706 		JBrowse link
G Tgfbr2 transforming growth factor, beta receptor 2 ISO (MGI:3801267|PMID:17050629) RGD PMID:17050629 MGI:3801267 NCBI chr 8:124,310,288...124,399,345
Ensembl chr 8:124,312,754...124,399,494 		JBrowse link
G Tmed2 transmembrane p24 trafficking protein 2 ISO MGI:4343479|MGI:4456438 (MGI:4453264|PMID:20178780) RGD PMID:20178780 MGI:4453264 NCBI chr12:37,471,259...37,480,344
Ensembl chr12:37,471,260...37,480,297 		JBrowse link
G Vangl2 VANGL planar cell polarity protein 2 ISO (MGI:2157686|PMID:11440971) RGD PMID:11440971 MGI:2157686 NCBI chr13:90,379,203...90,405,627
Ensembl chr13:90,380,632...90,405,591 		JBrowse link
G Wnt3a Wnt family member 3A ISO MGI:1857489 (MGI:3611726|PMID:16291790) RGD PMID:16291790 MGI:3611726 NCBI chr10:45,598,898...45,643,151
Ensembl chr10:45,598,912...45,638,035 		JBrowse link
G Wnt5a Wnt family member 5A IEA
ISO		 GO_REF:0000107
MGI:1298218 (MGI:4413372|PMID:19795512)		 Ensembl
RGD		 PMID:19795512 GO_REF:0000107 MGI:4413372 NCBI chr16:4,469,451...4,490,271
Ensembl chr16:4,469,468...4,489,860 		JBrowse link
G Zic3 Zic family member 3 ISO (PMID:9354794)
MGI:2180720|MGI:3043027|MGI:97359 (MGI:3056222|PMID:15384171), (MGI:3624254|PMID:16496285)		 RGD PMID:9354794 PMID:15384171 PMID:16496285 MGI:3056222 MGI:3624254 NCBI chr  X:140,875,191...140,888,344
Ensembl chr  X:140,878,216...140,888,795 		JBrowse link
inner ear morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abr ABR activator of RhoGEF and GTPase ISO MGI:88141 (MGI:3622851|PMID:11921339) RGD PMID:11921339 MGI:3622851 NCBI chr10:64,565,121...64,657,079
Ensembl chr10:64,567,268...64,657,089 		JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family, member A3 IEA
ISO		 GO_REF:0000107
MGI:3043947 (MGI:5488831|PMID:23536097)		 Ensembl
RGD		 PMID:23536097 GO_REF:0000107 MGI:5488831 NCBI chr 1:127,302,920...127,337,828
Ensembl chr 1:127,301,128...127,337,882 		JBrowse link
G Atoh1 atonal bHLH transcription factor 1 ISO MGI:2155983|MGI:2155984 (MGI:3525036|PMID:15543141), (MGI:3607238|PMID:16145671) RGD PMID:15543141 PMID:16145671 MGI:3525036 MGI:3607238 NCBI chr 4:95,498,003...95,500,098
Ensembl chr 4:95,498,003...95,500,089 		JBrowse link
G Atp2b2 ATPase plasma membrane Ca2+ transporting 2 ISO MGI:1857876 (MGI:1275896|PMID:9668038) RGD PMID:9668038 MGI:1275896 NCBI chr 4:145,704,779...145,948,997
Ensembl chr 4:145,703,046...146,016,325 		JBrowse link
G Atp6v1b1 ATPase H+ transporting V1 subunit B1 NOT ISO
ISS		 (PMID:19639346)
(MGI:2669353|PMID:12782355)
GO_REF:0000024		 RGD
UniProt		 PMID:12782355 PMID:19639346 GO_REF:0000024 MGI:2669353 NCBI chr 4:115,417,100...115,435,754
Ensembl chr 4:115,416,580...115,437,206 		JBrowse link
G Atp8a2 ATPase phospholipid transporting 8A2 IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr15:39,955,689...40,488,737
Ensembl chr15:40,000,322...40,428,800 		JBrowse link
G Bcr BCR activator of RhoGEF and GTPase ISO MGI:107771 (MGI:3622851|PMID:11921339) RGD PMID:11921339 MGI:3622851 NCBI chr20:14,421,250...14,546,406
Ensembl chr20:14,421,141...14,545,772 		JBrowse link
G Cdh23 cadherin-related 23 ISO MGI:1856229|MGI:1856681|MGI:2665714 (MGI:3579755|PMID:15925194), (MGI:75953|PMID:7610888) RGD PMID:7610888 PMID:15925194 MGI:3579755 MGI:61210 MGI:75953 NCBI chr20:29,857,018...30,263,758
Ensembl chr20:29,857,637...29,990,111 		JBrowse link
G Celsr1 cadherin, EGF LAG seven-pass G-type receptor 1 ISO MGI:1862019|MGI:2668337 (MGI:2667273|PMID:12842012) RGD PMID:12842012 MGI:2667273 NCBI chr 7:126,774,010...126,914,085
Ensembl chr 7:126,775,516...126,913,585 		JBrowse link
G Chd7 chromodomain helicase DNA binding protein 7 ISO (PMID:15300250)
MGI:3511552 (MGI:3056111|PMID:15353999)		 RGD PMID:15300250 PMID:15353999 MGI:3056111 NCBI chr 5:21,769,087...21,952,036
Ensembl chr 5:21,830,882...21,950,696 		JBrowse link
G Chrna10 cholinergic receptor nicotinic alpha 10 subunit ISO MGI:3774038 (MGI:3771935|PMID:18077337) RGD PMID:18077337 MGI:3771935 NCBI chr 1:167,206,722...167,212,199
Ensembl chr 1:167,206,722...167,210,919 		JBrowse link
G Chrna9 cholinergic receptor nicotinic alpha 9 subunit ISO MGI:2158742 (MGI:3771935|PMID:18077337) RGD PMID:18077337 MGI:3771935 NCBI chr14:43,883,450...43,890,171
Ensembl chr14:43,883,458...43,890,171 		JBrowse link
G Col11a1 collagen type XI alpha 1 chain ISO MGI:1856399 (MGI:49531|PMID:1952599) RGD PMID:1952599 MGI:49531 NCBI chr 2:216,863,423...217,056,523
Ensembl chr 2:216,863,428...217,056,523 		JBrowse link
G Col2a1 collagen type II alpha 1 chain IEA
ISO		 GO_REF:0000107
MGI:1857275 (MGI:892501|PMID:9165353)		 Ensembl
RGD		 PMID:9165353 GO_REF:0000107 MGI:892501 NCBI chr 7:139,454,945...139,484,403
Ensembl chr 7:139,455,242...139,483,997 		JBrowse link
G Dlx5 distal-less homeobox 5 IEA
ISO		 GO_REF:0000107
MGI:101927|MGI:2180474 (MGI:2384365|PMID:12142028), (MGI:3689133|PMID:16900517)		 Ensembl
RGD		 PMID:12142028 PMID:16900517 GO_REF:0000107 MGI:2384365 MGI:3689133 NCBI chr 4:32,387,741...32,392,085
Ensembl chr 4:32,387,741...32,392,007 		JBrowse link
G Dlx6 distal-less homeobox 6 ISO MGI:101926 (MGI:3689133|PMID:16900517) RGD PMID:16900517 MGI:3689133 NCBI chr 4:32,373,096...32,377,388
Ensembl chr 4:32,373,641...32,377,253 		JBrowse link
G Efna2 ephrin A2 TAS RGD PMID:10792438 RGD:1300471 NCBI chr 7:12,382,636...12,393,266
Ensembl chr 7:12,382,636...12,393,266 		JBrowse link
G Ephb2 Eph receptor B2 ISO (MGI:1859095|PMID:10839360) RGD PMID:10839360 MGI:1859095 NCBI chr 5:155,024,478...155,143,539
Ensembl chr 5:155,022,493...155,204,456 		JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 ISO MGI:1857803|MGI:2150426|MGI:97486 (MGI:1344210|PMID:10471511), (MGI:3577160|PMID:15817220), (MGI:3702803|PMID:16916509) RGD PMID:10471511 PMID:15817220 PMID:16916509 MGI:1344210 MGI:3577160 MGI:3702803 NCBI chr 5:4,275,728...4,495,525
Ensembl chr 5:4,373,626...4,513,142 		JBrowse link
G Fgf10 fibroblast growth factor 10 ISO MGI:1347464|MGI:1859647 (MGI:3654570|PMID:16691564), (MGI:3688470|PMID:11062007) RGD PMID:11062007 PMID:16691564 MGI:3654570 MGI:3688470 NCBI chr 2:51,673,480...51,747,533
Ensembl chr 2:51,672,722...51,750,369 		JBrowse link
G Fgf8 fibroblast growth factor 8 ISO MGI:1345138 (MGI:3577817|PMID:15809037) RGD PMID:15809037 MGI:3577817 NCBI chr 1:265,492,949...265,498,965
Ensembl chr 1:265,493,124...265,498,831 		JBrowse link
G Fgf9 fibroblast growth factor 9 ISO MGI:2135961 (MGI:3056034|PMID:15328018) RGD PMID:15328018 MGI:3056034 NCBI chr15:38,341,657...38,386,945
Ensembl chr15:38,341,089...38,387,316 		JBrowse link
G Fgfr1 Fibroblast growth factor receptor 1 ISO MGI:2153351 (MGI:2386422|PMID:12194867) RGD PMID:12194867 MGI:2386422 NCBI chr16:71,265,390...71,319,046
Ensembl chr16:71,266,248...71,319,449 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 ISO MGI:2153811 (MGI:2153190|PMID:10934262) RGD PMID:10934262 MGI:2153190 NCBI chr 1:200,590,951...200,696,946
Ensembl chr 1:200,590,953...200,696,928 		JBrowse link
G Foxg1 forkhead box G1 ISO MGI:1099809|MGI:2388671 (MGI:3654570|PMID:16691564) RGD PMID:16691564 MGI:3654570 NCBI chr 6:69,971,227...69,974,037
Ensembl chr 6:69,971,227...69,974,037 		JBrowse link
G Foxi1 forkhead box I1 ISO MGI:2448634 (MGI:2652196|PMID:12642503) RGD PMID:12642503 MGI:2652196 NCBI chr10:19,160,566...19,164,505
Ensembl chr10:19,160,582...19,164,505 		JBrowse link
G Frzb frizzled-related protein ISO MGI:98958 (MGI:3823145|PMID:18991062) RGD PMID:18991062 MGI:3823145 NCBI chr 3:67,635,604...67,668,772
Ensembl chr 3:67,635,607...67,668,772 		JBrowse link
G Fzd3 frizzled class receptor 3 ISO MGI:108474 (MGI:3616416|PMID:16495441) RGD PMID:16495441 MGI:3616416 NCBI chr15:48,601,259...48,670,257
Ensembl chr15:48,601,266...48,670,257 		JBrowse link
G Fzd6 frizzled class receptor 6 ISO MGI:108476 (MGI:3616416|PMID:16495441) RGD PMID:16495441 MGI:3616416 NCBI chr 7:77,898,329...77,931,034
Ensembl chr 7:77,899,322...77,931,029 		JBrowse link
G Gata2 GATA binding protein 2 ISO MGI:4818492 (MGI:4821520|PMID:20652952) RGD PMID:20652952 MGI:4821520 NCBI chr 4:120,129,028...120,142,490
Ensembl chr 4:120,133,713...120,142,488 		JBrowse link
G Gata3 GATA binding protein 3 ISO MGI:2153826|MGI:2181200 (MGI:1928163|PMID:11135239), (MGI:5013488|PMID:21553382) RGD PMID:11135239 PMID:21553382 MGI:1928163 MGI:5013488 NCBI chr17:72,419,752...72,452,043
Ensembl chr17:72,429,618...72,450,681 		JBrowse link
G Gbx2 gastrulation brain homeobox 2 ISO MGI:1857634 (MGI:3578572|PMID:15829521), (MGI:3588904|PMID:15996652) RGD PMID:15829521 PMID:15996652 MGI:3578572 MGI:3588904 NCBI chr 9:97,063,265...97,065,855
Ensembl chr 9:97,063,728...97,065,817 		JBrowse link
G Gfi1 growth factor independent 1 transcriptional repressor ISO MGI:2449921 (MGI:2429425|PMID:12441305) RGD PMID:12441305 MGI:2429425 NCBI chr14:3,058,035...3,073,332
Ensembl chr14:3,058,993...3,068,371 		JBrowse link
G Hmx2 H6 family homeobox 2 ISO MGI:107160|MGI:2154542 (MGI:2154463|PMID:11748138), (MGI:3055237|PMID:15363417) RGD PMID:11748138 PMID:15363417 MGI:2154463 MGI:3055237 NCBI chr 1:203,515,605...203,523,266
Ensembl chr 1:203,515,609...203,523,358 		JBrowse link
G Hmx3 H6 family homeobox 3 ISO MGI:107159|MGI:1857577 (MGI:1197796|PMID:9435283), (MGI:3055237|PMID:15363417) RGD PMID:9435283 PMID:15363417 MGI:1197796 MGI:3055237 NCBI chr 1:203,509,731...203,511,695
Ensembl chr 1:203,509,731...203,511,695 		JBrowse link
G Hoxa1 homeobox A1 ISO MGI:3056069 (MGI:3055618|PMID:15367676) RGD PMID:15367676 MGI:3055618 NCBI chr 4:82,124,358...82,127,182
Ensembl chr 4:82,125,406...82,127,066 		JBrowse link
G Insig1 insulin induced gene 1 ISO MGI:1920249 (MGI:3689278|PMID:16955138) RGD PMID:16955138 MGI:3689278 NCBI chr 4:342,302...350,515
Ensembl chr 4:342,302...350,515 		JBrowse link
G Insig2 insulin induced gene 2 ISO MGI:1916289 (MGI:3689278|PMID:16955138) RGD PMID:16955138 MGI:3689278 NCBI chr13:37,264,818...37,292,718
Ensembl chr13:37,266,312...37,287,458 		JBrowse link
G Itga8 integrin subunit alpha 8 ISO MGI:2181699 (MGI:1355040|PMID:10742111) RGD PMID:10742111 MGI:1355040 NCBI chr17:79,321,893...79,676,927
Ensembl chr17:79,321,900...79,676,499 		JBrowse link
G Kcnq4 potassium voltage-gated channel subfamily Q member 4 IEA
ISO		 GO_REF:0000107
MGI:3618993 (MGI:3617033|PMID:16437162)		 Ensembl
RGD		 PMID:16437162 GO_REF:0000107 MGI:3617033 NCBI chr 5:139,625,783...139,677,300
Ensembl chr 5:139,627,576...139,677,300 		JBrowse link
G Mafb MAF bZIP transcription factor B ISO MGI:1856419 (MGI:3611672|PMID:16325169) RGD PMID:16325169 MGI:3611672 NCBI chr 3:156,338,993...156,340,913
Ensembl chr 3:156,339,004...156,340,913 		JBrowse link
G Myo15a myosin XVA ISO MGI:1857036 (MGI:3041655|PMID:14724386), (MGI:3054106|PMID:11718241) RGD PMID:11718241 PMID:14724386 MGI:3041655 MGI:3054106 NCBI chr10:46,840,098...46,897,362
Ensembl chr10:46,840,113...46,896,054 		JBrowse link
G Myo6 myosin VI ISO
IBA		 MGI:1856555 (MGI:77423|PMID:7493015)
PMID:21873635		 RGD PMID:7493015, PMID:21873635 MGI:77423, RGD:13792537 NCBI chr 8:87,583,649...87,731,271
Ensembl chr 8:87,630,916...87,731,269 		JBrowse link
G Myo7a myosin VIIA ISO MGI:1856716|MGI:1860092|MGI:2155422|MGI:3511858 (MGI:2156358|PMID:11753415), (MGI:3510503|PMID:15389316), (MGI:53596|PMID:5795329) RGD PMID:5795329 PMID:11753415 PMID:15389316 MGI:2156358 MGI:3510503 MGI:53596 NCBI chr 1:163,001,313...163,071,545
Ensembl chr 1:163,001,875...163,071,508 		JBrowse link
G Neurog1 neurogenin 1 ISO UniProtKB:Q6ZNK6|UniProtKB:Q8TF63 (PMID:23419067)
MGI:2183171 (MGI:3607238|PMID:16145671)		 RGD PMID:16145671 PMID:23419067 MGI:3607238 NCBI chr17:9,154,656...9,156,175
Ensembl chr17:9,154,656...9,156,175 		JBrowse link
G Nr4a3 nuclear receptor subfamily 4, group A, member 3 ISO MGI:3037444 (MGI:2157256|PMID:11784868) RGD PMID:11784868 MGI:2157256 NCBI chr 5:63,781,801...63,822,890
Ensembl chr 5:63,781,801...63,821,637 		JBrowse link
G Ntn1 netrin 1 IEA
ISO		 GO_REF:0000107
MGI:2137018 (MGI:3718276|PMID:17616930)		 Ensembl
RGD		 PMID:17616930 GO_REF:0000107 MGI:3718276 NCBI chr10:54,761,925...54,982,072
Ensembl chr10:54,761,871...54,967,585 		JBrowse link
G Otop1 otopetrin 1 ISO MGI:1856638|MGI:2655558 (MGI:2654297|PMID:12651873) RGD PMID:12651873 MGI:2654297 NCBI chr14:77,236,278...77,263,729
Ensembl chr14:77,236,278...77,263,729 		JBrowse link
G Otx1 orthodenticle homeobox 1 IEA
ISO		 GO_REF:0000107
MGI:2136272|MGI:97451 (MGI:1335816|PMID:10225993)		 Ensembl
RGD		 PMID:10225993 GO_REF:0000107 MGI:1335816 NCBI chr14:106,861,556...106,864,933
Ensembl chr14:106,861,676...106,864,892 		JBrowse link
G Otx2 orthodenticle homeobox 2 ISO MGI:97450 (MGI:1335816|PMID:10225993) RGD PMID:10225993 MGI:1335816 NCBI chr15:25,500,037...25,511,619
Ensembl chr15:25,502,019...25,505,691 		JBrowse link
G Pax2 paired box 2 ISS
ISO		 GO_REF:0000024
MGI:109344|MGI:1857673|UniProtKB:Q00288 (MGI:3052393|PMID:15242798), (MGI:3702803|PMID:16916509), (MGI:4822275|PMID:20727173), (MGI:84247|PMID:8951055)		 UniProt
RGD		 PMID:8951055 PMID:15242798 PMID:16916509 PMID:20727173 GO_REF:0000024 MGI:3052393 MGI:3702803 MGI:4822275 MGI:84247 NCBI chr 1:264,493,579...264,585,073
Ensembl chr 1:264,504,591...264,583,329 		JBrowse link
G Pax8 paired box 8 ISO UniProtKB:P32114 (MGI:4822275|PMID:20727173) RGD PMID:20727173 MGI:4822275 NCBI chr 3:1,527,316...1,586,019
Ensembl chr 3:1,527,279...1,584,946 		JBrowse link
G Pou4f3 POU class 4 homeobox 3 ISO MGI:1857425 (MGI:2451279|PMID:12585968) RGD PMID:12585968 MGI:2451279 NCBI chr18:36,713,869...36,716,461
Ensembl chr18:36,713,869...36,716,461 		JBrowse link
G Prrx1 paired related homeobox 1 ISO MGI:98218 (MGI:1306737|PMID:9729491) RGD PMID:9729491 MGI:1306737 NCBI chr13:81,147,038...81,215,559
Ensembl chr13:81,147,348...81,214,546 		JBrowse link
G Prrx2 paired related homeobox 2 ISO MGI:97712 (MGI:1306737|PMID:9729491) RGD PMID:9729491 MGI:1306737 NCBI chr 3:9,681,871...9,718,051
Ensembl chr 3:9,681,871...9,718,051 		JBrowse link
G Ptprq protein tyrosine phosphatase, receptor type, Q ISO MGI:2679316 (MGI:2677560|PMID:14534255) RGD PMID:14534255 MGI:2677560 NCBI chr 7:49,763,657...50,034,932
Ensembl chr 7:49,763,657...50,034,932 		JBrowse link
G Ror2 receptor tyrosine kinase-like orphan receptor 2 ISO MGI:2183225 (MGI:3814781|PMID:18606138) RGD PMID:18606138 MGI:3814781 NCBI chr17:11,953,552...12,134,386
Ensembl chr17:11,953,552...12,134,386 		JBrowse link
G Six1 SIX homeobox 1 ISO MGI:106034 (MGI:3578604|PMID:15788460) RGD PMID:15788460 MGI:3578604 NCBI chr 6:95,929,060...95,934,296
Ensembl chr 6:95,929,060...95,934,296 		JBrowse link
G Six4 SIX homeobox 4 ISO MGI:102780 (MGI:3578604|PMID:15788460) RGD PMID:15788460 MGI:3578604 NCBI chr 6:95,984,868...95,999,709
Ensembl chr 6:95,984,868...95,998,529 		JBrowse link
G Slitrk6 SLIT and NTRK-like family, member 6 ISO MGI:4417931 (MGI:4413621|PMID:19936227) RGD PMID:19936227 MGI:4413621 NCBI chr15:95,507,632...95,514,259
Ensembl chr15:95,507,640...95,514,259 		JBrowse link
G Sobp sine oculis binding protein homolog ISO MGI:1856614 (MGI:3664354|PMID:16962269) RGD PMID:16962269 MGI:3664354 NCBI chr20:47,731,713...47,910,466
Ensembl chr20:47,750,762...47,910,375 		JBrowse link
G Sox2 SRY-box transcription factor 2 ISO MGI:2447995 (MGI:3578496|PMID:15846349) RGD PMID:15846349 MGI:3578496 NCBI chr 2:121,165,137...121,167,545
Ensembl chr 2:121,165,137...121,167,545 		JBrowse link
G Spry2 sprouty RTK signaling antagonist 2 ISO MGI:3578633|MGI:99604 (MGI:3577817|PMID:15809037) RGD PMID:15809037 MGI:3577817 NCBI chr15:90,172,769...90,177,823
Ensembl chr15:90,172,975...90,175,802 		JBrowse link
G Tbx1 T-box transcription factor 1 ISS
ISO		 GO_REF:0000024
MGI:2179136|MGI:2179190|MGI:2179191|MGI:3046196|MGI:3619149 (MGI:2671642|PMID:12913075), (MGI:3039048|PMID:15084464), (MGI:3530686|PMID:15652707), (MGI:3629255|PMID:16600992)		 UniProt
RGD		 PMID:12913075 PMID:15084464 PMID:15652707 PMID:16600992 GO_REF:0000024 MGI:2671642 MGI:3039048 MGI:3530686 MGI:3629255 NCBI chr11:86,552,022...86,561,647
Ensembl chr11:86,552,022...86,560,969 		JBrowse link
G Tfap2a transcription factor AP-2 alpha ISO
ISS		 (PMID:21204207)
GO_REF:0000024		 RGD
UniProt		 PMID:21204207 GO_REF:0000024 NCBI chr17:24,653,342...24,670,457
Ensembl chr17:24,654,902...24,670,457 		JBrowse link
G Tifab TIFA inhibitor ISO UniProtKB:Q8TF63|UniProtKB:Q92886 (PMID:23419067) RGD PMID:23419067 NCBI chr17:9,234,948...9,239,266
Ensembl chr17:9,236,249...9,239,265 		JBrowse link
G Tmie transmembrane inner ear ISO
IBA		 MGI:1857053 (MGI:2183496|PMID:12140191)
PMID:21873635		 RGD PMID:12140191, PMID:21873635 MGI:2183496, RGD:13792537 NCBI chr 8:119,142,116...119,157,071
Ensembl chr 8:119,142,434...119,157,071 		JBrowse link
G Ush1c USH1 protein network component harmonin ISO
IBA		 MGI:2651858|MGI:2651859 (MGI:2675093|PMID:14519688)
PMID:21873635		 RGD PMID:14519688, PMID:21873635 MGI:2675093, RGD:13792537 NCBI chr 1:102,207,096...102,256,779
Ensembl chr 1:102,207,096...102,255,459 		JBrowse link
G Ush1g USH1 protein network component sans ISO MGI:2450561 (MGI:2450572|PMID:12588793), (MGI:49706|PMID:1927362) RGD PMID:1927362 PMID:12588793 MGI:2450572 MGI:49706 NCBI chr10:103,866,566...103,873,416
Ensembl chr10:103,869,377...103,873,246 		JBrowse link
G Wnt1 Wnt family member 1 ISO MGI:98956 (MGI:3582112|PMID:15961523) RGD PMID:15961523 MGI:3582112 NCBI chr 7:140,464,999...140,469,046
Ensembl chr 7:140,464,999...140,469,046 		JBrowse link
G Wnt3a Wnt family member 3A ISO MGI:98953 (MGI:3582112|PMID:15961523) RGD PMID:15961523 MGI:3582112 NCBI chr10:45,598,898...45,643,151
Ensembl chr10:45,598,912...45,638,035 		JBrowse link
G Wnt5a Wnt family member 5A ISO (MGI:3823145|PMID:18991062) RGD PMID:18991062 MGI:3823145 NCBI chr16:4,469,451...4,490,271
Ensembl chr16:4,469,468...4,489,860 		JBrowse link
middle ear morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Edn1 endothelin 1 ISO MGI:1857637 (MGI:65725|PMID:8152482) RGD PMID:8152482 MGI:65725 NCBI chr17:22,136,814...22,143,745
Ensembl chr17:22,137,324...22,143,324 		JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 ISO MGI:2150426 (MGI:1344210|PMID:10471511) RGD PMID:10471511 MGI:1344210 NCBI chr 5:4,275,728...4,495,525
Ensembl chr 5:4,373,626...4,513,142 		JBrowse link
G Eya4 EYA transcriptional coactivator and phosphatase 4 ISO MGI:3775095 (MGI:3774741|PMID:18219393) RGD PMID:18219393 MGI:3774741 NCBI chr 1:23,237,617...23,611,580
Ensembl chr 1:23,409,408...23,610,164 		JBrowse link
G Fgfr1 Fibroblast growth factor receptor 1 ISO MGI:3574787 (MGI:3527944|PMID:15630379) RGD PMID:15630379 MGI:3527944 NCBI chr16:71,265,390...71,319,046
Ensembl chr16:71,266,248...71,319,449 		JBrowse link
G Gas1 growth arrest-specific 1 ISO MGI:2388397 (MGI:3713422|PMID:17525797) RGD PMID:17525797 MGI:3713422 NCBI chr17:4,846,116...4,849,350
Ensembl chr17:4,846,789...4,847,940 		JBrowse link
G Gsc goosecoid homeobox ISO (MGI:3035838|PMID:14973294) RGD PMID:14973294 MGI:3035838 NCBI chr 6:128,147,181...128,149,220
Ensembl chr 6:128,147,181...128,149,220 		JBrowse link
G Hoxa2 homeobox A2 ISO MGI:102778|MGI:1857530|MGI:2385711 (MGI:3525808|PMID:15634706), (MGI:3587518|PMID:15861402), (MGI:3608156|PMID:16221728) RGD PMID:15634706 PMID:15861402 PMID:16221728 MGI:3525808 MGI:3587518 MGI:3608156 NCBI chr 4:82,130,441...82,134,846
Ensembl chr 4:82,131,329...82,133,605 		JBrowse link
G Insig1 insulin induced gene 1 ISO MGI:1920249 (MGI:3689278|PMID:16955138) RGD PMID:16955138 MGI:3689278 NCBI chr 4:342,302...350,515
Ensembl chr 4:342,302...350,515 		JBrowse link
G Insig2 insulin induced gene 2 ISO MGI:1916289 (MGI:3689278|PMID:16955138) RGD PMID:16955138 MGI:3689278 NCBI chr13:37,264,818...37,292,718
Ensembl chr13:37,266,312...37,287,458 		JBrowse link
G Msx1 msh homeobox 1 ISO MGI:1933766 (MGI:3611627|PMID:16330189) RGD PMID:16330189 MGI:3611627 NCBI chr14:77,712,262...77,716,061
Ensembl chr14:77,712,240...77,716,059 		JBrowse link
G Myc MYC proto-oncogene, bHLH transcription factor ISO MGI:2178233|MGI:2386570 (MGI:3712581|PMID:17523175) RGD PMID:17523175 MGI:3712581 NCBI chr 7:102,586,313...102,591,240
Ensembl chr 7:102,586,313...102,591,240 		JBrowse link
G Naglu N-acetyl-alpha-glucosaminidase ISO MGI:1934018 (MGI:3769195|PMID:17712420) RGD PMID:17712420 MGI:3769195 NCBI chr10:88,979,363...88,986,879
Ensembl chr10:88,979,383...88,986,867 		JBrowse link
G Nkx3-2 NK3 homeobox 2 ISO MGI:1931319 (MGI:3035838|PMID:14973294) RGD PMID:14973294 MGI:3035838 NCBI chr14:73,813,531...73,818,489
Ensembl chr14:73,813,528...73,815,757 		JBrowse link
G Nog noggin ISO
IEA		 (PMID:10080184)
GO_REF:0000107		 RGD
Ensembl		 PMID:10080184 GO_REF:0000107 NCBI chr10:76,811,759...76,813,386
Ensembl chr10:76,811,759...76,813,386 		JBrowse link
G Osr1 odd-skipped related transcription factor 1 ISS
ISO		 GO_REF:0000024
UniProtKB:Q91ZD1 (MGI:3848564|PMID:19389375)		 UniProt
RGD		 PMID:19389375 GO_REF:0000024 MGI:3848564 NCBI chr 6:35,314,431...35,321,458
Ensembl chr 6:35,314,444...35,321,667 		JBrowse link
G Osr2 odd-skipped related transciption factor 2 ISS
ISO		 GO_REF:0000024
(MGI:3848564|PMID:19389375)		 UniProt
RGD		 PMID:19389375 GO_REF:0000024 MGI:3848564 NCBI chr 7:74,047,820...74,055,096
Ensembl chr 7:74,047,814...74,055,256 		JBrowse link
G Prkra protein activator of interferon induced protein kinase EIF2AK2 IEA
ISO		 GO_REF:0000107
MGI:3626341 (MGI:3623660|PMID:16571658)		 Ensembl
RGD		 PMID:16571658 GO_REF:0000107 MGI:3623660 NCBI chr 3:63,489,081...63,507,918
Ensembl chr 3:63,489,074...63,507,926 		JBrowse link
G Prrx1 paired related homeobox 1 ISO MGI:1857640|MGI:98218 (MGI:1306737|PMID:9729491), (MGI:73363|PMID:7758948) RGD PMID:7758948 PMID:9729491 MGI:1306737 MGI:73363 NCBI chr13:81,147,038...81,215,559
Ensembl chr13:81,147,348...81,214,546 		JBrowse link
G Prrx2 paired related homeobox 2 ISO MGI:97712 (MGI:1306737|PMID:9729491) RGD PMID:9729491 MGI:1306737 NCBI chr 3:9,681,871...9,718,051
Ensembl chr 3:9,681,871...9,718,051 		JBrowse link
G Rpl38 ribosomal protein L38 ISO MGI:1861228 (MGI:4888466|PMID:21062742) RGD PMID:21062742 MGI:4888466 NCBI chr10:103,198,424...103,202,059
Ensembl chr 2:199,479,007...199,479,309 		JBrowse link
G Six1 SIX homeobox 1 ISO MGI:2655195 (MGI:2671031|PMID:12874121) RGD PMID:12874121 MGI:2671031 NCBI chr 6:95,929,060...95,934,296
Ensembl chr 6:95,929,060...95,934,296 		JBrowse link
G Six2 SIX homeobox 2 ISO MGI:96174 (MGI:3525808|PMID:15634706) RGD PMID:15634706 MGI:3525808 NCBI chr 6:8,952,572...8,955,893
Ensembl chr 6:8,952,572...8,956,276 		JBrowse link
G Tbx1 T-box transcription factor 1 ISS
ISO		 GO_REF:0000024
MGI:1932522|MGI:2179190|MGI:2179191|MGI:3619149 (MGI:3530686|PMID:15652707), (MGI:3629255|PMID:16600992), (MGI:4822099|PMID:20501333)		 UniProt
RGD		 PMID:15652707 PMID:16600992 PMID:20501333 GO_REF:0000024 MGI:3530686 MGI:3629255 MGI:4822099 NCBI chr11:86,552,022...86,561,647
Ensembl chr11:86,552,022...86,560,969 		JBrowse link
G Tshz1 teashirt zinc finger homeobox 1 ISO MGI:3721421 (MGI:3720547|PMID:17586487) RGD PMID:17586487 MGI:3720547 NCBI chr18:80,860,995...80,907,744
Ensembl chr18:80,862,372...80,865,584 		JBrowse link
negative regulation of heart looping term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tbx2 T-box transcription factor 2 ISO (MGI:3039059|PMID:15042700) RGD PMID:15042700 MGI:3039059 NCBI chr10:73,278,932...73,290,764
Ensembl chr10:73,279,119...73,289,921 		JBrowse link
notochord formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crb2 crumbs cell polarity complex component 2 ISS
ISO		 GO_REF:0000024
(MGI:5296388|PMID:22072575)		 UniProt
RGD		 PMID:22072575 GO_REF:0000024 MGI:5296388 NCBI chr 3:22,037,812...22,061,247
Ensembl chr 3:22,038,357...22,058,871 		JBrowse link
G Efna1 ephrin A1 ISO MGI:95278 (MGI:1934524|PMID:11287184) RGD PMID:11287184 MGI:1934524 NCBI chr 2:188,588,808...188,596,156
Ensembl chr 2:188,588,796...188,596,222 		JBrowse link
G Epha2 Eph receptor A2 ISO MGI:103236|MGI:2448472 (MGI:1934524|PMID:11287184) RGD PMID:11287184 MGI:1934524 NCBI chr 5:159,845,773...159,874,203
Ensembl chr 5:159,845,774...159,874,206 		JBrowse link
G Tbxt T-box transcription factor T ISO MGI:1856184 (MGI:77191|PMID:7589801) RGD PMID:7589801 MGI:77191 NCBI chr 1:52,887,067...52,900,691
Ensembl chr 1:52,887,067...52,894,832 		JBrowse link
notochord morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Epha2 Eph receptor A2 ISO MGI:2448472 (MGI:1934524|PMID:11287184) RGD PMID:11287184 MGI:1934524 NCBI chr 5:159,845,773...159,874,203
Ensembl chr 5:159,845,774...159,874,206 		JBrowse link
G Kdm6a lysine demethylase 6A ISO MGI:5448825 (MGI:5448135|PMID:22949634) RGD PMID:22949634 MGI:5448135 NCBI chr  X:4,805,493...4,945,788
Ensembl chr  X:4,806,277...4,945,944 		JBrowse link
G Nckap1 NCK-associated protein 1 ISO MGI:3578145 (MGI:3701029|PMID:16831833) RGD PMID:16831833 MGI:3701029 NCBI chr 3:67,725,180...67,804,680
Ensembl chr 3:67,725,947...67,787,990 		JBrowse link
G Nog noggin IEA
ISO		 GO_REF:0000107
(MGI:3654583|PMID:16916379)		 Ensembl
RGD		 PMID:16916379 GO_REF:0000107 MGI:3654583 NCBI chr10:76,811,759...76,813,386
Ensembl chr10:76,811,759...76,813,386 		JBrowse link
G Wnt11 Wnt family member 11 ISO MGI:98958 (MGI:5634837|PMID:25813538) RGD PMID:25813538 MGI:5634837 NCBI chr 1:163,794,136...163,813,756
Ensembl chr 1:163,797,660...163,813,756 		JBrowse link
G Wnt5a Wnt family member 5A IEA
ISO		 GO_REF:0000107
MGI:101948 (MGI:5634837|PMID:25813538)		 Ensembl
RGD		 PMID:25813538 GO_REF:0000107 MGI:5634837 NCBI chr16:4,469,451...4,490,271
Ensembl chr16:4,469,468...4,489,860 		JBrowse link
notochord regression term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gli1 GLI family zinc finger 1 ISO MGI:95728 (MGI:1354188|PMID:10725236) RGD PMID:10725236 MGI:1354188 NCBI chr 7:70,620,794...70,633,171
Ensembl chr 7:70,620,766...70,630,338 		JBrowse link
G Gli2 GLI family zinc finger 2 ISO MGI:95727 (MGI:1354188|PMID:10725236) RGD PMID:10725236 MGI:1354188 NCBI chr13:34,829,021...35,049,172
Ensembl chr13:34,829,139...35,048,444 		JBrowse link
optic cup formation involved in camera-type eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Arid1a AT-rich interaction domain 1A ISO MGI:5469314 (MGI:5466629|PMID:23129809) RGD PMID:23129809 MGI:5466629 NCBI chr 5:151,904,687...151,977,973
Ensembl chr 5:151,904,684...151,977,636 		JBrowse link
optic cup morphogenesis involved in camera-type eye development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aldh1a1 aldehyde dehydrogenase 1 family, member A1 IEA
ISO		 GO_REF:0000107
MGI:1861722 (MGI:3624188|PMID:16611695)		 Ensembl
RGD		 PMID:16611695 GO_REF:0000107 MGI:3624188 NCBI chr 1:238,222,689...238,264,381
Ensembl chr 1:238,222,521...238,264,330 		JBrowse link
G Aldh1a3 aldehyde dehydrogenase 1 family, member A3 IEA
ISO		 GO_REF:0000107
MGI:1353450 (MGI:3624188|PMID:16611695)		 Ensembl
RGD		 PMID:16611695 GO_REF:0000107 MGI:3624188 NCBI chr 1:127,302,920...127,337,828
Ensembl chr 1:127,301,128...127,337,882 		JBrowse link
G Pax2 paired box 2 ISS
ISO		 GO_REF:0000024
(MGI:84247|PMID:8951055)		 UniProt
RGD		 PMID:8951055 GO_REF:0000024 MGI:84247 NCBI chr 1:264,493,579...264,585,073
Ensembl chr 1:264,504,591...264,583,329 		JBrowse link
optic cup structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tfap2a transcription factor AP-2 alpha ISS
ISO		 GO_REF:0000024
(MGI:4439459|PMID:20150232)		 UniProt
RGD		 PMID:20150232 GO_REF:0000024 MGI:4439459 NCBI chr17:24,653,342...24,670,457
Ensembl chr17:24,654,902...24,670,457 		JBrowse link
optic placode formation involved in camera-type eye formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Frs2 fibroblast growth factor receptor substrate 2 ISO MGI:3521833 (MGI:3513737|PMID:15569927) RGD PMID:15569927 MGI:3513737 NCBI chr 7:60,128,506...60,210,482
Ensembl chr 7:60,128,508...60,210,518 		JBrowse link
G Prox1 prospero homeobox 1 ISO (PMID:11850194) RGD PMID:11850194 NCBI chr13:108,382,536...108,444,107
Ensembl chr13:108,382,399...108,443,294 		JBrowse link
optic vesicle morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Six3 SIX homeobox 3 ISO (MGI:2136715|PMID:11458394) RGD PMID:11458394 MGI:2136715 NCBI chr 6:8,886,730...8,891,094
Ensembl chr 6:8,886,591...8,889,925 		JBrowse link
G Tfap2a transcription factor AP-2 alpha ISS
ISO		 GO_REF:0000024
(MGI:4439459|PMID:20150232)		 UniProt
RGD		 PMID:20150232 GO_REF:0000024 MGI:4439459 NCBI chr17:24,653,342...24,670,457
Ensembl chr17:24,654,902...24,670,457 		JBrowse link
otic vesicle formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf10 fibroblast growth factor 10 ISO MGI:95517 (MGI:2683889|PMID:14623822) RGD PMID:14623822 MGI:2683889 NCBI chr 2:51,673,480...51,747,533
Ensembl chr 2:51,672,722...51,750,369 		JBrowse link
G Fgf3 fibroblast growth factor 3 ISO MGI:1099809|MGI:96604 (MGI:3720541|PMID:17601531) RGD PMID:17601531 MGI:3720541 NCBI chr 1:218,003,018...218,006,942
Ensembl chr 1:218,003,018...218,006,942 		JBrowse link
G Fgf8 fibroblast growth factor 8 ISO MGI:95117 (MGI:3720541|PMID:17601531) RGD PMID:17601531 MGI:3720541 NCBI chr 1:265,492,949...265,498,965
Ensembl chr 1:265,493,124...265,498,831 		JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 ISO MGI:2153790 (MGI:1197797|PMID:9435295) RGD PMID:9435295 MGI:1197797 NCBI chr 1:200,590,951...200,696,946
Ensembl chr 1:200,590,953...200,696,928 		JBrowse link
G Hesx1 HESX homeobox 1 ISO MGI:1931124 (MGI:1206234|PMID:9620767) RGD PMID:9620767 MGI:1206234 NCBI chr16:2,616,538...2,636,708
Ensembl chr16:2,634,603...2,636,708 		JBrowse link
G Sox9 SRY-box transcription factor 9 ISS
ISO		 GO_REF:0000024
MGI:1932522|MGI:2385468 (MGI:3795349|PMID:18377888)		 UniProt
RGD		 PMID:18377888 GO_REF:0000024 MGI:3795349 NCBI chr10:101,288,528...101,294,030
Ensembl chr10:101,288,489...101,293,379 		JBrowse link
G Tcap titin-cap ISO (PMID:9817758) RGD PMID:9817758 NCBI chr10:86,337,705...86,338,414
Ensembl chr10:86,337,728...86,338,411 		JBrowse link
otic vesicle morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eya1 EYA transcriptional coactivator and phosphatase 1 ISO MGI:2150426 (MGI:3702803|PMID:16916509) RGD PMID:16916509 MGI:3702803 NCBI chr 5:4,275,728...4,495,525
Ensembl chr 5:4,373,626...4,513,142 		JBrowse link
G Tbx1 T-box transcription factor 1 ISO MGI:3046793 (MGI:3703494|PMID:17074316) RGD PMID:17074316 MGI:3703494 NCBI chr11:86,552,022...86,561,647
Ensembl chr11:86,552,022...86,560,969 		JBrowse link
otolith formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slc44a4 solute carrier family 44, member 4 ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr20:4,593,389...4,609,641
Ensembl chr20:4,593,389...4,609,631 		JBrowse link
otolith morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bloc1s5 biogenesis of lysosomal organelles complex 1 subunit 5 ISO MGI:1856106 (MGI:53623|PMID:5367369) RGD PMID:5367369 MGI:53623 NCBI chr17:26,808,193...26,833,257
Ensembl chr17:26,808,330...26,833,247 		JBrowse link
G Lrig1 leucine-rich repeats and immunoglobulin-like domains 1 ISO MGI:2443955 (MGI:5519140|PMID:24086156) RGD PMID:24086156 MGI:5519140 NCBI chr 4:126,615,998...126,717,434
Ensembl chr 4:126,617,244...126,644,895 		JBrowse link
G Lrig3 leucine-rich repeats and immunoglobulin-like domains 3 ISO MGI:107935 (MGI:5519140|PMID:24086156) RGD PMID:24086156 MGI:5519140 NCBI chr 7:69,213,098...69,263,251
Ensembl chr 7:69,213,147...69,263,142 		JBrowse link
G Ttc39c tetratricopeptide repeat domain 39C IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr18:3,958,424...4,080,028
Ensembl chr18:3,958,432...4,080,025 		JBrowse link
outer ear morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eya1 EYA transcriptional coactivator and phosphatase 1 ISO MGI:2150426 (MGI:1344210|PMID:10471511) RGD PMID:10471511 MGI:1344210 NCBI chr 5:4,275,728...4,495,525
Ensembl chr 5:4,373,626...4,513,142 		JBrowse link
G Fgfr1 Fibroblast growth factor receptor 1 ISO MGI:3574787 (MGI:3527944|PMID:15630379) RGD PMID:15630379 MGI:3527944 NCBI chr16:71,265,390...71,319,046
Ensembl chr16:71,266,248...71,319,449 		JBrowse link
G Gas1 growth arrest-specific 1 ISO MGI:2388397 (MGI:3713422|PMID:17525797) RGD PMID:17525797 MGI:3713422 NCBI chr17:4,846,116...4,849,350
Ensembl chr17:4,846,789...4,847,940 		JBrowse link
G Hoxa1 homeobox A1 ISO (PMID:16155570) RGD PMID:16155570 NCBI chr 4:82,124,358...82,127,182
Ensembl chr 4:82,125,406...82,127,066 		JBrowse link
G Mapk1 mitogen activated protein kinase 1 ISO MGI:1346859 (MGI:3832113|PMID:18952847) RGD PMID:18952847 MGI:3832113 NCBI chr11:88,203,863...88,273,301
Ensembl chr11:88,211,599...88,273,254 		JBrowse link
G Mapk3 mitogen activated protein kinase 3 ISO MGI:1346858 (MGI:3832113|PMID:18952847) RGD PMID:18952847 MGI:3832113 NCBI chr 1:198,192,773...198,198,975
Ensembl chr 1:198,192,773...198,198,975 		JBrowse link
G Prkra protein activator of interferon induced protein kinase EIF2AK2 IEA
ISO		 GO_REF:0000107
MGI:3626341 (MGI:3623660|PMID:16571658)		 Ensembl
RGD		 PMID:16571658 GO_REF:0000107 MGI:3623660 NCBI chr 3:63,489,081...63,507,918
Ensembl chr 3:63,489,074...63,507,926 		JBrowse link
G Tbx1 T-box transcription factor 1 ISS
ISO		 GO_REF:0000024
MGI:1932522|MGI:3619149 (MGI:3629255|PMID:16600992)		 UniProt
RGD		 PMID:16600992 GO_REF:0000024 MGI:3629255 NCBI chr11:86,552,022...86,561,647
Ensembl chr11:86,552,022...86,560,969 		JBrowse link
positive regulation of otic vesicle morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stox1 storkhead box 1 ISO (MGI:5635320|PMID:25677106) RGD PMID:25677106 MGI:5635320 NCBI chr20:32,276,857...32,353,677
Ensembl chr20:32,276,658...32,353,677 		JBrowse link
semicircular canal formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hoxa1 homeobox A1 ISO (PMID:16155570) RGD PMID:16155570 NCBI chr 4:82,124,358...82,127,182
Ensembl chr 4:82,125,406...82,127,066 		JBrowse link
semicircular canal fusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fgf10 fibroblast growth factor 10 ISO MGI:1859647 (MGI:3575490|PMID:15765517) RGD PMID:15765517 MGI:3575490 NCBI chr 2:51,673,480...51,747,533
Ensembl chr 2:51,672,722...51,750,369 		JBrowse link
semicircular canal morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Chd7 chromodomain helicase DNA binding protein 7 ISO MGI:98493 (MGI:4397600|PMID:19855134) RGD PMID:19855134 MGI:4397600 NCBI chr 5:21,769,087...21,952,036
Ensembl chr 5:21,830,882...21,950,696 		JBrowse link
G Eya1 EYA transcriptional coactivator and phosphatase 1 ISO MGI:1857803 (MGI:1335261|PMID:10072433) RGD PMID:10072433 MGI:1335261 NCBI chr 5:4,275,728...4,495,525
Ensembl chr 5:4,373,626...4,513,142 		JBrowse link
G Fgf10 fibroblast growth factor 10 ISO MGI:95517 (MGI:3720541|PMID:17601531) RGD PMID:17601531 MGI:3720541 NCBI chr 2:51,673,480...51,747,533
Ensembl chr 2:51,672,722...51,750,369 		JBrowse link
G Fgf3 fibroblast growth factor 3 ISO MGI:1099809 (MGI:3720541|PMID:17601531) RGD PMID:17601531 MGI:3720541 NCBI chr 1:218,003,018...218,006,942
Ensembl chr 1:218,003,018...218,006,942 		JBrowse link
G Nr4a3 nuclear receptor subfamily 4, group A, member 3 ISO MGI:3037444 (MGI:2157256|PMID:11784868) RGD PMID:11784868 MGI:2157256 NCBI chr 5:63,781,801...63,822,890
Ensembl chr 5:63,781,801...63,821,637 		JBrowse link
G Tbx1 T-box transcription factor 1 ISS
ISO		 GO_REF:0000024
MGI:2444748 (MGI:4397600|PMID:19855134)		 UniProt
RGD		 PMID:19855134 GO_REF:0000024 MGI:4397600 NCBI chr11:86,552,022...86,561,647
Ensembl chr11:86,552,022...86,560,969 		JBrowse link
G Zeb1 zinc finger E-box binding homeobox 1 IEA
ISO		 GO_REF:0000107
MGI:1861230 (MGI:5294688|PMID:21980308)		 Ensembl
RGD		 PMID:21980308 GO_REF:0000107 MGI:5294688 NCBI chr17:54,656,627...54,714,920
Ensembl chr17:54,658,463...54,714,914 		JBrowse link
vestibular receptor cell morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ptprq protein tyrosine phosphatase, receptor type, Q IEA
ISO		 GO_REF:0000107
MGI:2679316 (MGI:5315778|PMID:22357859)		 Ensembl
RGD		 PMID:22357859 GO_REF:0000107 MGI:5315778 NCBI chr 7:49,763,657...50,034,932
Ensembl chr 7:49,763,657...50,034,932 		JBrowse link
vestibular receptor cell stereocilium organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pls1 plastin 1 IEA
ISO		 GO_REF:0000107
(MGI:5608770|PMID:25124451)		 Ensembl
RGD		 PMID:25124451 GO_REF:0000107 MGI:5608770 NCBI chr 8:103,557,361...103,659,625
Ensembl chr 8:103,557,364...103,608,913 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20044
    developmental process 6822
      anatomical structure morphogenesis 2887
        animal organ morphogenesis 1155
          embryonic organ morphogenesis 336
            ear morphogenesis + 140
            embryonic digestive tract morphogenesis + 20
            embryonic eye morphogenesis + 39
            embryonic genitalia morphogenesis 4
            embryonic heart tube morphogenesis + 70
            embryonic skeletal system morphogenesis + 110
            notochord morphogenesis + 11
            otic vesicle morphogenesis + 10
Path 2
Term Annotations click to browse term
  biological_process 20044
    developmental process 6822
      anatomical structure development 6288
        multicellular organism development 5764
          system development 5296
            animal organ development 4053
              embryonic organ development 536
                embryonic organ morphogenesis 336
                  ear morphogenesis + 140
                  embryonic digestive tract morphogenesis + 20
                  embryonic eye morphogenesis + 39
                  embryonic genitalia morphogenesis 4
                  embryonic heart tube morphogenesis + 70
                  embryonic skeletal system morphogenesis + 110
                  notochord morphogenesis + 11
                  otic vesicle morphogenesis + 10
paths to the root