Submit Data |  Help |  Video Tutorials |  News |  Publications |  FTP Download |  REST API |  Citing RGD |  Contact   

ONTOLOGY REPORT - ANNOTATIONS


Term:lymph node development
go back to main search page
Accession:GO:0048535 term browser browse the term
Definition:The process whose specific outcome is the progression of lymph nodes over time, from their formation to the mature structure. A lymph node is a round, oval, or bean shaped structure localized in clusters along the lymphatic vessels, with a distinct internal structure including specialized vasculature and B- and T-zones for the activation of lymphocytes.
Synonyms:broad_synonym: lymph gland development


show annotations for term's descendants           Sort by:
 
lymph node development term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccl21 C-C motif chemokine ligand 21 ISO MGI:MGI:1857881 (MGI:MGI:2660934|PMID:12732660) RGD PMID:12732660 MGI:MGI:2660934 NCBI chr 5:58,197,678...58,198,782
Ensembl chr 5:58,197,680...58,198,782
JBrowse link
G Cd248 CD248 molecule ISO MGI:MGI:3625491 (MGI:MGI:4838940|PMID:20432232) RGD PMID:20432232 MGI:MGI:4838940 NCBI chr 1:220,353,308...220,355,872
Ensembl chr 1:220,446,425...220,448,989
JBrowse link
G Cxcl13 C-X-C motif chemokine ligand 13 ISO MGI:MGI:2384500 (MGI:MGI:2660934|PMID:12732660), (MGI:MGI:4436841|PMID:19783990) RGD PMID:12732660, PMID:19783990 MGI:MGI:2660934, MGI:MGI:4436841 NCBI chr14:15,253,146...15,258,221
Ensembl chr14:15,253,125...15,258,207
JBrowse link
G Cxcr5 C-X-C motif chemokine receptor 5 ISO
IEA
MGI:MGI:2158677 (MGI:MGI:2660934|PMID:12732660)
GO_REF:0000107
RGD
Ensembl
PMID:12732660 GO_REF:0000107, MGI:MGI:2660934 NCBI chr 8:48,835,688...48,852,032
Ensembl chr 8:48,836,957...48,850,671
JBrowse link
G Fadd Fas associated via death domain ISO
ISS
UniProtKB:Q9QZL0 (MGI:MGI:5291865|PMID:21876153)
GO_REF:0000024
RGD
UniProt
PMID:21876153 GO_REF:0000024, MGI:MGI:5291865 NCBI chr 1:217,746,176...217,748,581
Ensembl chr 1:217,742,929...217,748,628
JBrowse link
G Flt3 Fms related receptor tyrosine kinase 3 ISO MGI:MGI:3628823 (MGI:MGI:4452060|PMID:20457904) RGD PMID:20457904 MGI:MGI:4452060 NCBI chr12:9,360,439...9,437,004
Ensembl chr12:9,360,672...9,436,570
JBrowse link
G Ikzf1 IKAROS family zinc finger 1 ISO MGI:MGI:2158738 (MGI:MGI:68746|PMID:7923373) RGD PMID:7923373 MGI:MGI:68746 NCBI chr14:91,782,281...91,867,828
Ensembl chr14:91,782,354...91,867,424
JBrowse link
G Il15 interleukin 15 ISO MGI:MGI:2136897 (MGI:MGI:1354083|PMID:10704459) RGD PMID:10704459 MGI:MGI:1354083 NCBI chr19:23,542,606...23,624,366
Ensembl chr19:23,542,889...23,554,594
JBrowse link
G Il7r interleukin 7 receptor ISO MGI:MGI:1857198 (MGI:MGI:2660934|PMID:12732660) RGD PMID:12732660 MGI:MGI:2660934
G LOC103694381 lymphotoxin-beta ISO MGI:MGI:1860955|MGI:MGI:1860970 (MGI:MGI:1095831|PMID:9256477), (MGI:MGI:87095|PMID:9133428) RGD PMID:9133428, PMID:9256477 MGI:MGI:1095831, MGI:MGI:87095 NCBI chr20:4,861,343...4,863,513
Ensembl chr20:4,861,335...4,863,198
JBrowse link
G Lta lymphotoxin alpha ISO MGI:MGI:1857215|MGI:MGI:1860953|MGI:MGI:1860954|MGI:MGI:1860957 (MGI:MGI:1098089|PMID:9368616), (MGI:MGI:1203431|PMID:9565643), (MGI:MGI:1343015|PMID:10415063), (MGI:MGI:65999|PMID:8171322), (MGI:MGI:75691|PMID:7636227) RGD PMID:7636227, PMID:8171322, PMID:9368616, PMID:9565643, PMID:10415063 MGI:MGI:1098089, MGI:MGI:1203431, MGI:MGI:1343015, MGI:MGI:65999, MGI:MGI:75691 NCBI chr20:4,851,889...4,854,677
Ensembl chr20:4,852,496...4,854,677
JBrowse link
G Nkx2-3 NK2 homeobox 3 ISO MGI:MGI:2386680|MGI:MGI:2448069 (MGI:MGI:1858364|PMID:10790368), (MGI:MGI:1888604|PMID:10926756) RGD PMID:10790368, PMID:10926756 MGI:MGI:1858364, MGI:MGI:1888604 NCBI chr 1:263,361,238...263,371,043
Ensembl chr 1:263,367,266...263,370,219
JBrowse link
G Pdpn podoplanin ISO
ISS
(MGI:MGI:5644359|PMID:25347465)
GO_REF:0000024
RGD
UniProt
PMID:25347465 GO_REF:0000024, MGI:MGI:5644359 NCBI chr 5:161,947,137...161,981,441
Ensembl chr 5:161,947,137...161,981,441
JBrowse link
G Polb DNA polymerase beta ISO MGI:MGI:5427084 (MGI:MGI:5553198|PMID:24388753) RGD PMID:24388753 MGI:MGI:5553198 NCBI chr16:74,237,001...74,260,272
Ensembl chr16:74,237,001...74,260,271
JBrowse link
G Rc3h1 ring finger and CCCH-type domains 1 ISO MGI:MGI:2442789 (MGI:MGI:5486592|PMID:23583643) RGD PMID:23583643 MGI:MGI:5486592 NCBI chr13:78,723,028...78,794,663
Ensembl chr13:78,722,763...78,789,266
JBrowse link
G Rc3h2 ring finger and CCCH-type domains 2 ISO MGI:MGI:2685397 (MGI:MGI:5486592|PMID:23583643) RGD PMID:23583643 MGI:MGI:5486592 NCBI chr 3:21,621,976...21,676,789
Ensembl chr 3:21,623,041...21,670,014
JBrowse link
G Ripk3 receptor-interacting serine-threonine kinase 3 ISO
ISS
UniProtKB:Q61160 (MGI:MGI:5291865|PMID:21876153)
GO_REF:0000024
RGD
UniProt
PMID:21876153 GO_REF:0000024, MGI:MGI:5291865 NCBI chr15:34,470,796...34,479,741
Ensembl chr15:34,470,796...34,479,741
JBrowse link
G Rorc RAR-related orphan receptor C ISO MGI:MGI:3026635 (MGI:MGI:2686818|PMID:14691482) RGD PMID:14691482 MGI:MGI:2686818 NCBI chr 2:195,612,471...195,636,797
Ensembl chr 2:195,617,021...195,637,630
JBrowse link
G Spns2 sphingolipid transporter 2 ISO MGI:MGI:4460276 (MGI:MGI:5490425|PMID:23180825) RGD PMID:23180825 MGI:MGI:5490425 NCBI chr10:59,010,428...59,049,482
Ensembl chr10:59,010,428...59,049,482
JBrowse link
G Tgfb1 transforming growth factor, beta 1 ISO MGI:MGI:1857258 (MGI:MGI:51412|PMID:1436033) RGD PMID:1436033 MGI:MGI:51412 NCBI chr 1:82,480,875...82,497,196
Ensembl chr 1:82,480,195...82,497,199
JBrowse link
G Tnfrsf11a TNF receptor superfamily member 11A ISO
IBA
MGI:MGI:1860238 (MGI:MGI:1345929|PMID:10500098)
PMID:21873635
RGD PMID:10500098, PMID:21873635 MGI:MGI:1345929, RGD:13792537 NCBI chr13:25,778,306...25,835,802
Ensembl chr13:25,778,317...25,835,957
JBrowse link
G Tox thymocyte selection-associated high mobility group box ISO MGI:MGI:3773716 (MGI:MGI:4834966|PMID:20818394) RGD PMID:20818394 MGI:MGI:4834966 NCBI chr 5:19,892,698...20,189,721
Ensembl chr 5:19,892,698...20,189,721
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20014
    immune system process 2837
      immune system development 1073
        hematopoietic or lymphoid organ development 1008
          lymph node development 22
Path 2
Term Annotations click to browse term
  biological_process 20014
    developmental process 6812
      anatomical structure development 6256
        multicellular organism development 5735
          system development 5272
            immune system development 1073
              hematopoietic or lymphoid organ development 1008
                lymph node development 22
paths to the root

NHLBI Logo

RGD is funded by grant HL64541 from the National Heart, Lung, and Blood Institute on behalf of the NIH.