Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:hematopoietic or lymphoid organ development
go back to main search page
Accession:GO:0048534 term browser browse the term
Definition:The process whose specific outcome is the progression of any organ involved in hematopoiesis (also known as hemopoiesis) or lymphoid cell activation over time, from its formation to the mature structure. Such development includes differentiation of resident cell types (stromal cells) and of migratory cell types dependent on the unique microenvironment afforded by the organ for their proper differentiation.
Synonyms:exact_synonym: haematopoietic or lymphoid organ development;   haemopoietic or lymphoid organ development;   hemopoietic or lymphoid organ development


show annotations for term's descendants           Sort by:
hematopoietic or lymphoid organ development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asxl1 ASXL transcriptional regulator 1 acts_upstream_of_or_within ISO
IEA 		MGI:4418244 (PMID:19861679)
GO_REF:0000107 		RGD
Ensembl		 PMID:19861679 GO_REF:0000107 NCBI chr 3:141,814,012...141,881,526
Ensembl chr 3:141,813,433...141,881,538 		JBrowse link
G Ltbr lymphotoxin beta receptor involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 4:158,108,884...158,115,339
Ensembl chr 4:158,108,886...158,121,539 		JBrowse link
bone marrow development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asxl1 ASXL transcriptional regulator 1 acts_upstream_of_or_within ISO
IEA 		MGI:4418244 (PMID:19861679)
GO_REF:0000107 		RGD
Ensembl		 PMID:19861679 GO_REF:0000107 NCBI chr 3:141,814,012...141,881,526
Ensembl chr 3:141,813,433...141,881,538 		JBrowse link
G Ctc1 CST telomere replication complex component 1 acts_upstream_of_or_within ISO
IEA 		MGI:5427642 (PMID:22531781)
GO_REF:0000107 		RGD
Ensembl		 PMID:22531781 GO_REF:0000107 NCBI chr10:53,714,614...53,735,298
Ensembl chr10:53,714,644...53,735,298 		JBrowse link
G Fancb FA complementation group B acts_upstream_of_or_within ISO (PMID:26658157) RGD PMID:26658157 NCBI chr  X:29,403,771...29,420,484
Ensembl chr  X:29,403,771...29,420,192 		JBrowse link
G Hoxb4 homeo box B4 acts_upstream_of_or_within ISO
IEA 		MGI:3045971 (PMID:14962901)
GO_REF:0000107 		RGD
Ensembl		 PMID:14962901 GO_REF:0000107 NCBI chr10:81,284,552...81,287,134
Ensembl chr10:81,284,552...81,287,128 		JBrowse link
G Lipa lipase A, lysosomal acid type acts_upstream_of_or_within ISO
IEA 		MGI:2451080 (PMID:20348241)
GO_REF:0000107 		RGD
Ensembl		 PMID:20348241 GO_REF:0000107 NCBI chr 1:232,024,351...232,057,735
Ensembl chr 1:232,024,356...232,057,633 		JBrowse link
G Lrp5 LDL receptor related protein 5 involved_in ISO
IEA 		(PMID:17680723)
GO_REF:0000107 		RGD
Ensembl		 PMID:17680723 GO_REF:0000107 NCBI chr 1:200,814,247...200,917,581
Ensembl chr 1:200,814,250...200,917,581 		JBrowse link
G Lrrc17 leucine rich repeat containing 17 involved_in ISO
IEA 		(PMID:19336404)
GO_REF:0000107 		RGD
Ensembl		 PMID:19336404 GO_REF:0000107 NCBI chr 4:13,501,428...13,531,845
Ensembl chr 4:13,501,436...13,531,845 		JBrowse link
G Mir188 microRNA 188 acts_upstream_of_or_within ISO (PMID:25751060) RGD PMID:25751060 NCBI chr  X:15,247,715...15,247,794
Ensembl chr  X:15,247,715...15,247,794 		JBrowse link
G Ptprc protein tyrosine phosphatase, receptor type, C involved_in ISO
IEA 		(PMID:21911094)
GO_REF:0000107 		RGD
Ensembl		 PMID:21911094 GO_REF:0000107 NCBI chr13:49,596,193...49,708,283
Ensembl chr13:49,596,193...49,708,692 		JBrowse link
G Sbds Sbds, ribosome maturation factor involved_in ISO
IEA 		(PMID:15342903)
GO_REF:0000107 		RGD
Ensembl		 PMID:15342903 GO_REF:0000107 NCBI chr12:26,420,410...26,429,650
Ensembl chr12:26,420,414...26,429,649 		JBrowse link
G Tp53 tumor protein p53 involved_in ISO
IEA 		(PMID:30146126)
GO_REF:0000107 		RGD
Ensembl		 PMID:30146126 GO_REF:0000107 NCBI chr10:54,798,871...54,810,300
Ensembl chr10:54,300,048...54,311,524 		JBrowse link
lymph node development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccl21 C-C motif chemokine ligand 21 acts_upstream_of_or_within ISO MGI:1857881 (PMID:12732660) RGD PMID:12732660 NCBI chr 5:56,980,557...56,981,661
Ensembl chr 5:56,980,558...56,981,686 		JBrowse link
G Cd248 CD248 molecule acts_upstream_of_or_within ISO
IEA 		MGI:3625491 (PMID:20432232)
GO_REF:0000107 		RGD
Ensembl		 PMID:20432232 GO_REF:0000107 NCBI chr 1:202,373,676...202,376,240
Ensembl chr 1:202,373,676...202,376,240 		JBrowse link
G Cd2ap CD2-associated protein acts_upstream_of_or_within ISO MGI:2664945 (PMID:24218450) RGD PMID:24218450 NCBI chr 9:18,086,744...18,182,744
Ensembl chr 9:18,086,984...18,182,199 		JBrowse link
G Cxcl13 C-X-C motif chemokine ligand 13 acts_upstream_of_or_within
involved_in 		ISO MGI:2384500 (PMID:12732660)
(PMID:19783990) 		RGD PMID:12732660 PMID:19783990 NCBI chr14:13,608,894...13,613,965
Ensembl chr14:13,608,902...13,613,933 		JBrowse link
G Cxcr5 C-X-C motif chemokine receptor 5 acts_upstream_of_or_within
involved_in 		ISO
IEA 		MGI:2158677 (PMID:12732660)
GO_REF:0000002
GO_REF:0000107 		RGD
InterPro
Ensembl		 PMID:12732660 GO_REF:0000002 GO_REF:0000107 NCBI chr 8:44,842,098...44,858,425
Ensembl chr 8:44,843,413...44,857,893 		JBrowse link
G Fadd Fas associated via death domain involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
UniProtKB:Q9QZL0 (PMID:21876153) 		UniProt
Ensembl
RGD		 PMID:21876153 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:199,743,200...199,745,746
Ensembl chr 1:199,739,994...199,745,653 		JBrowse link
G Flt3 Fms related receptor tyrosine kinase 3 acts_upstream_of_or_within ISO MGI:3628823 (PMID:20457904) RGD PMID:20457904 NCBI chr12:7,623,930...7,699,474
Ensembl chr12:7,623,930...7,699,474 		JBrowse link
G Ikzf1 IKAROS family zinc finger 1 acts_upstream_of_or_within ISO MGI:2158738 (PMID:7923373) RGD PMID:7923373 NCBI chr14:86,255,065...86,340,839
Ensembl chr14:86,255,065...86,342,416 		JBrowse link
G Il15 interleukin 15 acts_upstream_of_or_within ISO
IEA 		MGI:2136897 (PMID:10704459)
GO_REF:0000107 		RGD
Ensembl		 PMID:10704459 GO_REF:0000107 NCBI chr19:25,640,025...25,706,818
Ensembl chr19:25,640,251...25,706,820 		JBrowse link
G Il7r interleukin 7 receptor acts_upstream_of_or_within ISO MGI:1857198 (PMID:12732660) RGD PMID:12732660 NCBI chr 2:58,452,393...58,477,757
Ensembl chr 2:58,454,217...58,477,757 		JBrowse link
G Lta lymphotoxin alpha acts_upstream_of_or_within ISO
IEA 		MGI:1857215|MGI:1860953|MGI:1860954|MGI:1860957 (PMID:10415063), (PMID:7636227), (PMID:8171322), (PMID:9368616), (PMID:9565643)
GO_REF:0000107 		RGD
Ensembl		 PMID:7636227 PMID:8171322 PMID:9368616 PMID:9565643 PMID:10415063 GO_REF:0000107 NCBI chr20:3,618,853...3,621,324
Ensembl chr20:3,618,853...3,620,859 		JBrowse link
G Ltb lymphotoxin beta acts_upstream_of_or_within ISO
IEA 		MGI:1860955|MGI:1860970 (PMID:9133428), (PMID:9256477)
GO_REF:0000107 		RGD
Ensembl		 PMID:9133428 PMID:9256477 GO_REF:0000107 NCBI chr20:3,627,536...3,629,381
Ensembl chr20:3,627,537...3,629,381 		JBrowse link
G Nkx2-3 NK2 homeobox 3 acts_upstream_of_or_within ISO
IEA 		MGI:2386680|MGI:2448069 (PMID:10790368), (PMID:10926756)
GO_REF:0000107 		RGD
Ensembl		 PMID:10790368 PMID:10926756 GO_REF:0000107 NCBI chr 1:242,478,130...242,481,083
Ensembl chr 1:242,478,130...242,481,083 		JBrowse link
G Pdpn podoplanin involved_in ISS
ISO 		GO_REF:0000024
(PMID:25347465) 		UniProt
RGD		 PMID:25347465 GO_REF:0000024 NCBI chr 5:155,601,691...155,635,656
Ensembl chr 5:155,601,691...155,635,656 		JBrowse link
G Polb DNA polymerase beta acts_upstream_of_or_within ISO
IEA 		MGI:5427084 (PMID:24388753)
GO_REF:0000107 		RGD
Ensembl		 PMID:24388753 GO_REF:0000107 NCBI chr16:69,379,438...69,402,710
Ensembl chr16:69,379,400...69,404,812 		JBrowse link
G Rc3h1 ring finger and CCCH-type domains 1 acts_upstream_of_or_within ISO
IEA 		MGI:2442789 (PMID:23583643)
GO_REF:0000107 		RGD
Ensembl		 PMID:23583643 GO_REF:0000107 NCBI chr13:75,707,098...75,779,114
Ensembl chr13:73,173,946...73,238,839 		JBrowse link
G Rc3h2 ring finger and CCCH-type domains 2 acts_upstream_of_or_within ISO MGI:2685397 (PMID:23583643) RGD PMID:23583643 NCBI chr 3:41,531,319...41,596,496
Ensembl chr 3:21,110,679...21,179,933 		JBrowse link
G Rcbtb2 RCC1 and BTB domain containing protein 2 acts_upstream_of_or_within ISO
IEA 		(PMID:26291700)
GO_REF:0000107 		RGD
Ensembl		 PMID:26291700 GO_REF:0000107 NCBI chr15:48,319,809...48,364,441
Ensembl chr15:48,323,866...48,383,750 		JBrowse link
G Ripk3 receptor-interacting serine-threonine kinase 3 involved_in ISS
ISO 		GO_REF:0000024
UniProtKB:Q61160 (PMID:21876153) 		UniProt
RGD		 PMID:21876153 GO_REF:0000024 NCBI chr15:29,283,153...29,292,107
Ensembl chr15:29,283,145...29,292,121 		JBrowse link
G Rorc RAR-related orphan receptor C acts_upstream_of_or_within
involved_in 		ISO MGI:3026635 (PMID:14691482) RGD PMID:14691482 NCBI chr 2:182,009,707...182,034,910
Ensembl chr 2:182,009,286...182,034,907 		JBrowse link
G Spns2 SPNS lysolipid transporter 2, sphingosine-1-phosphate acts_upstream_of_or_within ISO
IEA 		MGI:4460276 (PMID:23180825)
GO_REF:0000107 		RGD
Ensembl		 PMID:23180825 GO_REF:0000107 NCBI chr10:57,067,348...57,105,969
Ensembl chr10:57,066,897...57,105,957 		JBrowse link
G Tgfb1 transforming growth factor, beta 1 acts_upstream_of_or_within ISO
IEA 		MGI:1857258 (PMID:1436033)
GO_REF:0000107 		RGD
Ensembl		 PMID:1436033 GO_REF:0000107 NCBI chr 1:90,324,312...90,340,627
Ensembl chr 1:81,196,532...81,212,847 		JBrowse link
G Tnfrsf11a TNF receptor superfamily member 11A involved_in
acts_upstream_of_or_within 		IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000107
MGI:1860238 (PMID:10500098) 		GO_Central
Ensembl
RGD		 PMID:10500098 GO_REF:0000033 GO_REF:0000107 NCBI chr13:21,928,370...21,986,719
Ensembl chr13:21,928,408...21,986,695 		JBrowse link
G Tox thymocyte selection-associated high mobility group box acts_upstream_of_or_within ISO
IEA 		MGI:3773716 (PMID:20818394)
GO_REF:0000107 		RGD
Ensembl		 PMID:20818394 GO_REF:0000107 NCBI chr 5:19,874,994...20,171,272
Ensembl chr 5:19,874,467...20,171,272 		JBrowse link
G Traf3ip2 Traf3 interacting protein 2 involved_in ISO MGI:3510784 (PMID:22585710) RGD PMID:22585710 NCBI chr20:44,565,992...44,609,240
Ensembl chr20:43,011,450...43,054,667 		JBrowse link
mucosa-associated lymphoid tissue development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nkx2-3 NK2 homeobox 3 acts_upstream_of_or_within ISO
IEA 		MGI:2448069 (PMID:10926756)
GO_REF:0000107 		RGD
Ensembl		 PMID:10926756 GO_REF:0000107 NCBI chr 1:242,478,130...242,481,083
Ensembl chr 1:242,478,130...242,481,083 		JBrowse link
G Rorc RAR-related orphan receptor C acts_upstream_of_or_within ISO MGI:3026635 (PMID:15247480) RGD PMID:15247480 NCBI chr 2:182,009,707...182,034,910
Ensembl chr 2:182,009,286...182,034,907 		JBrowse link
Peyer's patch development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase acts_upstream_of_or_within ISO
IEA 		MGI:1857117|MGI:2683027 (PMID:10720488)
GO_REF:0000107 		RGD
Ensembl		 PMID:10720488 GO_REF:0000107 NCBI chr 3:152,398,745...152,422,854
Ensembl chr 3:152,398,747...152,447,088 		JBrowse link
G Cacnb4 calcium voltage-gated channel auxiliary subunit beta 4 acts_upstream_of_or_within ISO
IEA 		MGI:1856936 (PMID:5037658)
GO_REF:0000107 		RGD
Ensembl		 PMID:5037658 GO_REF:0000107 NCBI chr 3:36,906,771...37,169,165
Ensembl chr 3:36,910,427...37,168,944 		JBrowse link
G Id2 inhibitor of DNA binding 2 acts_upstream_of_or_within ISO MGI:98510 (PMID:17452521) RGD PMID:17452521 NCBI chr 6:47,469,162...47,470,995
Ensembl chr 6:41,728,946...41,744,400 		JBrowse link
G Ikzf1 IKAROS family zinc finger 1 acts_upstream_of_or_within ISO MGI:2158738 (PMID:7923373) RGD PMID:7923373 NCBI chr14:86,255,065...86,340,839
Ensembl chr14:86,255,065...86,342,416 		JBrowse link
G Nkx2-3 NK2 homeobox 3 acts_upstream_of_or_within ISO
IEA 		MGI:2386680 (PMID:10790368)
GO_REF:0000107 		RGD
Ensembl		 PMID:10790368 GO_REF:0000107 NCBI chr 1:242,478,130...242,481,083
Ensembl chr 1:242,478,130...242,481,083 		JBrowse link
G Rorc RAR-related orphan receptor C involved_in ISO (PMID:14691482) RGD PMID:14691482 NCBI chr 2:182,009,707...182,034,910
Ensembl chr 2:182,009,286...182,034,907 		JBrowse link
G Stat5a signal transducer and activator of transcription 5A acts_upstream_of_or_within ISO
IEA 		MGI:103035 (PMID:15294943)
GO_REF:0000107 		RGD
Ensembl		 PMID:15294943 GO_REF:0000107 NCBI chr10:85,785,537...85,809,869
Ensembl chr10:85,785,537...85,809,866 		JBrowse link
G Stat5b signal transducer and activator of transcription 5B acts_upstream_of_or_within ISO
IEA 		MGI:103036 (PMID:15294943)
GO_REF:0000107 		RGD
Ensembl		 PMID:15294943 GO_REF:0000107 NCBI chr10:85,704,841...85,775,856
Ensembl chr10:85,705,670...85,775,668 		JBrowse link
G Tcf3 transcription factor 3 acts_upstream_of_or_within ISO MGI:98510 (PMID:17452521) RGD PMID:17452521 NCBI chr 7:9,280,571...9,302,315
Ensembl chr 7:9,280,571...9,302,314 		JBrowse link
G Tox thymocyte selection-associated high mobility group box acts_upstream_of_or_within ISO
IEA 		MGI:3773716 (PMID:20818394)
GO_REF:0000107 		RGD
Ensembl		 PMID:20818394 GO_REF:0000107 NCBI chr 5:19,874,994...20,171,272
Ensembl chr 5:19,874,467...20,171,272 		JBrowse link
Peyer's patch morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Artn artemin involved_in ISO
IEA 		(PMID:17322904)
GO_REF:0000107 		RGD
Ensembl		 PMID:17322904 GO_REF:0000107 NCBI chr 5:131,458,596...131,470,193
Ensembl chr 5:131,464,756...131,468,025 		JBrowse link
G Foxl1 forkhead box L1 acts_upstream_of_or_within ISO MGI:2180191 (PMID:12648490) RGD PMID:12648490 NCBI chr19:49,197,269...49,200,682
Ensembl chr19:49,197,400...49,198,425 		JBrowse link
G Ret ret proto-oncogene involved_in ISO
IEA 		(PMID:17322904)
GO_REF:0000107 		RGD
Ensembl		 PMID:17322904 GO_REF:0000107 NCBI chr 4:151,325,969...151,368,176
Ensembl chr 4:151,326,431...151,368,176 		JBrowse link
spleen development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abl1 ABL proto-oncogene 1, non-receptor tyrosine kinase acts_upstream_of_or_within ISO
IEA 		MGI:2153718 (PMID:2065352)
GO_REF:0000107 		RGD
Ensembl		 PMID:2065352 GO_REF:0000107 NCBI chr 3:14,979,853...15,083,065
Ensembl chr 3:14,979,853...15,083,065 		JBrowse link
G Adam17 ADAM metallopeptidase domain 17 involved_in ISO
IEA 		(PMID:17371977)
GO_REF:0000107 		RGD
Ensembl		 PMID:17371977 GO_REF:0000107 NCBI chr 6:40,872,936...40,920,700
Ensembl chr 6:40,872,856...40,920,639 		JBrowse link
G Ahr aryl hydrocarbon receptor involved_in ISO (PMID:7732381), (PMID:8692887) RGD PMID:7732381 PMID:8692887 NCBI chr 6:57,961,423...57,998,901
Ensembl chr 6:52,234,089...52,271,568 		JBrowse link
G Barx1 BARX homeobox 1 acts_upstream_of_or_within ISO
IEA 		MGI:3578634 (PMID:17855428)
GO_REF:0000107 		RGD
Ensembl		 PMID:17855428 GO_REF:0000107 NCBI chr17:15,990,412...15,993,887
Ensembl chr17:15,990,412...15,993,887 		JBrowse link
G Bcl2 BCL2, apoptosis regulator acts_upstream_of_or_within ISO MGI:1197519|MGI:2156165 (PMID:15818405) RGD PMID:15818405 NCBI chr13:23,204,464...23,366,900
Ensembl chr13:22,684,989...22,853,743
Ensembl chr13:22,684,989...22,853,743 		JBrowse link
G Bcl2l11 Bcl2-like 11 acts_upstream_of_or_within ISO MGI:88138 (PMID:15818405) RGD PMID:15818405 NCBI chr 3:135,820,042...135,857,330
Ensembl chr 3:115,366,646...115,404,068 		JBrowse link
G Bcl3 BCL3, transcription coactivator acts_upstream_of_or_within ISO MGI:2158443 (PMID:10586052) RGD PMID:10586052 NCBI chr 1:79,471,368...79,485,908
Ensembl chr 1:79,471,369...79,485,607 		JBrowse link
G Cacnb4 calcium voltage-gated channel auxiliary subunit beta 4 acts_upstream_of_or_within ISO
IEA 		MGI:1856936 (PMID:5037658)
GO_REF:0000107 		RGD
Ensembl		 PMID:5037658 GO_REF:0000107 NCBI chr 3:36,906,771...37,169,165
Ensembl chr 3:36,910,427...37,168,944 		JBrowse link
G Cdh17 cadherin 17 involved_in ISO
IEA 		(PMID:15688343)
GO_REF:0000107 		RGD
Ensembl		 PMID:15688343 GO_REF:0000107 NCBI chr 5:25,262,820...25,314,884
Ensembl chr 5:25,262,758...25,314,884 		JBrowse link
G Cdkn2b cyclin-dependent kinase inhibitor 2B acts_upstream_of_or_within ISO MGI:97350|MGI:97495 (PMID:22560297) RGD PMID:22560297 NCBI chr 5:104,009,839...104,019,082
Ensembl chr 5:104,010,680...104,019,050 		JBrowse link
G Cfc1 cripto, FRL-1, cryptic family 1 acts_upstream_of_or_within ISO
IEA 		MGI:2179530 (PMID:10521397)
GO_REF:0000107 		RGD
Ensembl		 PMID:10521397 GO_REF:0000107 NCBI chr 9:36,742,106...36,751,931
Ensembl chr 9:36,739,071...36,751,930 		JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 involved_in ISO (PMID:15475956) RGD PMID:15475956 NCBI chr 1:12,312,426...12,314,869
Ensembl chr 1:12,312,160...12,314,897 		JBrowse link
G Coa5 cytochrome C oxidase assembly factor 5 acts_upstream_of_or_within ISO (PMID:36301669) RGD PMID:36301669 NCBI chr 9:39,651,459...39,664,870 JBrowse link
G Ctc1 CST telomere replication complex component 1 acts_upstream_of_or_within ISO
IEA 		MGI:5427642 (PMID:22531781)
GO_REF:0000107 		RGD
Ensembl		 PMID:22531781 GO_REF:0000107 NCBI chr10:53,714,614...53,735,298
Ensembl chr10:53,714,644...53,735,298 		JBrowse link
G Dicer1 dicer 1 ribonuclease III acts_upstream_of_or_within ISO (PMID:21307095) RGD PMID:21307095 NCBI chr 6:129,392,298...129,457,252
Ensembl chr 6:123,631,250...123,693,965 		JBrowse link
G Epb42 erythrocyte membrane protein band 4.2 acts_upstream_of_or_within ISO
IEA 		MGI:2182816 (PMID:10359562)
GO_REF:0000107 		RGD
Ensembl		 PMID:10359562 GO_REF:0000107 NCBI chr 3:128,433,460...128,451,683
Ensembl chr 3:107,979,713...107,997,932 		JBrowse link
G Fadd Fas associated via death domain involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
UniProtKB:Q9QZL0 (PMID:21876153) 		UniProt
Ensembl
RGD		 PMID:21876153 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:199,743,200...199,745,746
Ensembl chr 1:199,739,994...199,745,653 		JBrowse link
G Fam210b family with sequence similarity 210, member B acts_upstream_of_or_within ISO
IEA 		(PMID:39000360)
GO_REF:0000107 		RGD
Ensembl		 PMID:39000360 GO_REF:0000107 NCBI chr 3:161,118,228...161,128,400
Ensembl chr 3:161,118,239...161,128,397 		JBrowse link
G Fas Fas cell surface death receptor acts_upstream_of_or_within ISO MGI:1856334 (PMID:18199416) RGD PMID:18199416 NCBI chr 1:241,212,155...241,245,774
Ensembl chr 1:231,798,960...231,832,591 		JBrowse link
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within ISO
IEA 		MGI:1859647 (PMID:15329346)
GO_REF:0000107 		RGD
Ensembl		 PMID:15329346 GO_REF:0000107 NCBI chr 2:50,801,171...50,878,218
Ensembl chr 2:50,800,992...50,876,866 		JBrowse link
G Flt3 Fms related receptor tyrosine kinase 3 acts_upstream_of_or_within ISO MGI:96995 (PMID:22674806) RGD PMID:22674806 NCBI chr12:7,623,930...7,699,474
Ensembl chr12:7,623,930...7,699,474 		JBrowse link
G Flvcr1 FLVCR choline and heme transporter 1 acts_upstream_of_or_within ISO
IEA 		MGI:3776022 (PMID:18258918)
GO_REF:0000107 		RGD
Ensembl		 PMID:18258918 GO_REF:0000107 NCBI chr13:102,586,263...102,608,647
Ensembl chr13:102,586,257...102,608,661 		JBrowse link
G Hoxb4 homeo box B4 acts_upstream_of_or_within ISO
IEA 		MGI:3045971 (PMID:14962901)
GO_REF:0000107 		RGD
Ensembl		 PMID:14962901 GO_REF:0000107 NCBI chr10:81,284,552...81,287,134
Ensembl chr10:81,284,552...81,287,128 		JBrowse link
G Jarid2 jumonji and AT-rich interaction domain containing 2 acts_upstream_of_or_within ISO MGI:1856923 (PMID:9376320) RGD PMID:9376320 NCBI chr17:19,777,487...19,957,696
Ensembl chr17:19,777,266...19,955,690 		JBrowse link
G Kmt2a lysine methyltransferase 2A acts_upstream_of_or_within ISO
IEA 		MGI:95559 (PMID:22674806)
GO_REF:0000107 		RGD
Ensembl		 PMID:22674806 GO_REF:0000107 NCBI chr 8:45,116,763...45,193,320
Ensembl chr 8:45,118,814...45,193,181 		JBrowse link
G Lipa lipase A, lysosomal acid type acts_upstream_of_or_within ISO
IEA 		MGI:2451080 (PMID:19179613)
GO_REF:0000107 		RGD
Ensembl		 PMID:19179613 GO_REF:0000107 NCBI chr 1:232,024,351...232,057,735
Ensembl chr 1:232,024,356...232,057,633 		JBrowse link
G Myb MYB proto-oncogene, transcription factor acts_upstream_of_or_within ISO
IEA 		MGI:2677048 (PMID:19360001)
GO_REF:0000107 		RGD
Ensembl		 PMID:19360001 GO_REF:0000107 NCBI chr 1:15,939,771...15,973,367
Ensembl chr 1:15,939,761...15,973,057 		JBrowse link
G Nfkb2 nuclear factor kappa B subunit 2 acts_upstream_of_or_within ISO
IEA 		MGI:2179705 (PMID:10586052)
GO_REF:0000107 		RGD
Ensembl		 PMID:10586052 GO_REF:0000107 NCBI chr 1:245,164,586...245,173,225
Ensembl chr 1:245,165,950...245,173,213 		JBrowse link
G Nfkbiz NFKB inhibitor zeta involved_in ISO MGI:3046930 (PMID:31182790) RGD PMID:31182790 NCBI chr11:44,782,676...44,810,722
Ensembl chr11:44,782,676...44,810,723 		JBrowse link
G Nkx2-3 NK2 homeobox 3 acts_upstream_of_or_within ISO
IEA 		MGI:2386680|MGI:2448069 (PMID:10207146), (PMID:10790368), (PMID:10926756)
GO_REF:0000107 		RGD
Ensembl		 PMID:10207146 PMID:10790368 PMID:10926756 GO_REF:0000107 NCBI chr 1:242,478,130...242,481,083
Ensembl chr 1:242,478,130...242,481,083 		JBrowse link
G Nkx2-5 NK2 homeobox 5 involved_in
acts_upstream_of_or_within 		ISO
IEA
ISS 		(PMID:22560297)
GO_REF:0000107
MGI:104737|MGI:97495 (PMID:22560297)
GO_REF:0000024 		RGD
Ensembl
UniProt		 PMID:22560297 GO_REF:0000024 GO_REF:0000107 NCBI chr10:16,340,428...16,347,004
Ensembl chr10:16,344,159...16,346,934 		JBrowse link
G Nkx3-2 NK3 homeobox 2 acts_upstream_of_or_within ISO
IEA 		MGI:1857926|MGI:1931319|MGI:3848005 (PMID:10449756), (PMID:10572046), (PMID:15329346), (PMID:19208343)
GO_REF:0000107 		RGD
Ensembl		 PMID:10449756 PMID:10572046 PMID:15329346 PMID:19208343 GO_REF:0000107 NCBI chr14:69,183,795...69,186,182
Ensembl chr14:69,183,820...69,186,061 		JBrowse link
G Nr1h3 nuclear receptor subfamily 1, group H, member 3 IEP RGD PMID:17341476 RGD:401827282 NCBI chr 3:77,158,808...77,168,907
Ensembl chr 3:77,158,808...77,168,722 		JBrowse link
G Onecut1 one cut homeobox 1 acts_upstream_of_or_within ISO
IEA 		MGI:2179340 (PMID:12874218)
GO_REF:0000107 		RGD
Ensembl		 PMID:12874218 GO_REF:0000107 NCBI chr 8:75,599,432...75,633,598
Ensembl chr 8:75,599,740...75,627,277 		JBrowse link
G Pbx1 PBX homeobox 1 acts_upstream_of_or_within ISO
IEA 		MGI:104737|MGI:2155612|MGI:97350|MGI:98769 (PMID:15944191), (PMID:22560297)
GO_REF:0000107 		RGD
Ensembl		 PMID:15944191 PMID:22560297 GO_REF:0000107 NCBI chr13:82,811,664...83,121,447
Ensembl chr13:80,278,770...80,588,594 		JBrowse link
G Pcid2 PCI domain containing 2 involved_in ISO (PMID:20870947) RGD PMID:20870947 NCBI chr16:76,423,245...76,448,712
Ensembl chr16:76,423,245...76,448,712 		JBrowse link
G Pitx2 paired-like homeodomain 2 involved_in ISO (PMID:15475956) RGD PMID:15475956 NCBI chr 2:217,717,738...217,737,293
Ensembl chr 2:217,717,693...217,737,293 		JBrowse link
G Pkn1 protein kinase N1 acts_upstream_of_or_within ISO
IEA 		MGI:5475202 (PMID:23223530)
GO_REF:0000107 		RGD
Ensembl		 PMID:23223530 GO_REF:0000107 NCBI chr19:24,442,130...24,470,107
Ensembl chr19:24,442,122...24,470,107 		JBrowse link
G Polb DNA polymerase beta acts_upstream_of_or_within ISO
IEA 		MGI:5427084 (PMID:24388753)
GO_REF:0000107 		RGD
Ensembl		 PMID:24388753 GO_REF:0000107 NCBI chr16:69,379,438...69,402,710
Ensembl chr16:69,379,400...69,404,812 		JBrowse link
G Ppp2r3c protein phosphatase 2, regulatory subunit B'', gamma acts_upstream_of_or_within ISO
IEA 		MGI:3759678 (PMID:16129705)
GO_REF:0000107 		RGD
Ensembl		 PMID:16129705 GO_REF:0000107 NCBI chr 6:72,647,025...72,670,885
Ensembl chr 6:72,647,025...72,672,491 		JBrowse link
G Prkdc protein kinase, DNA-activated, catalytic subunit IMP RGD PMID:22981234 RGD:8696027 NCBI chr11:85,040,790...85,258,357
Ensembl chr11:85,040,792...85,257,952 		JBrowse link
G Psmb9 proteasome 20S subunit beta 9 IEP RGD PMID:24707720 RGD:9854625 NCBI chr20:4,667,044...4,672,512
Ensembl chr20:4,666,046...4,672,512 		JBrowse link
G Rbm15 RNA binding motif protein 15 acts_upstream_of_or_within ISO
IEA 		MGI:2656539|MGI:3706994 (PMID:18981216)
GO_REF:0000107 		RGD
Ensembl		 PMID:18981216 GO_REF:0000107 NCBI chr 2:194,945,974...194,954,498
Ensembl chr 2:194,945,974...194,954,703 		JBrowse link
G Rc3h1 ring finger and CCCH-type domains 1 acts_upstream_of_or_within ISO
IEA 		MGI:2442789 (PMID:23583643)
GO_REF:0000107 		RGD
Ensembl		 PMID:23583643 GO_REF:0000107 NCBI chr13:75,707,098...75,779,114
Ensembl chr13:73,173,946...73,238,839 		JBrowse link
G Rc3h2 ring finger and CCCH-type domains 2 acts_upstream_of_or_within ISO MGI:2685397 (PMID:23583643) RGD PMID:23583643 NCBI chr 3:41,531,319...41,596,496
Ensembl chr 3:21,110,679...21,179,933 		JBrowse link
G Rcbtb2 RCC1 and BTB domain containing protein 2 acts_upstream_of_or_within ISO
IEA 		(PMID:26291700)
GO_REF:0000107 		RGD
Ensembl		 PMID:26291700 GO_REF:0000107 NCBI chr15:48,319,809...48,364,441
Ensembl chr15:48,323,866...48,383,750 		JBrowse link
G Ripk3 receptor-interacting serine-threonine kinase 3 involved_in ISS
ISO 		GO_REF:0000024
UniProtKB:Q61160 (PMID:21876153) 		UniProt
RGD		 PMID:21876153 GO_REF:0000024 NCBI chr15:29,283,153...29,292,107
Ensembl chr15:29,283,145...29,292,121 		JBrowse link
G Samd9l sterile alpha motif domain containing 9 like acts_upstream_of_or_within ISO (PMID:24029230) RGD PMID:24029230 NCBI chr 4:31,362,054...31,376,412
Ensembl chr 4:31,361,669...31,376,415 		JBrowse link
G Sco1 synthesis of cytochrome C oxidase 1 acts_upstream_of_or_within ISO (PMID:36301669) RGD PMID:36301669 NCBI chr10:51,744,656...51,757,246
Ensembl chr10:51,744,656...51,757,237 		JBrowse link
G Slc40a1 solute carrier family 40 member 1 acts_upstream_of_or_within ISO
IEA 		MGI:1889622 (PMID:15342464)
GO_REF:0000107 		RGD
Ensembl		 PMID:15342464 GO_REF:0000107 NCBI chr 9:48,033,526...48,053,876
Ensembl chr 9:48,033,526...48,051,481 		JBrowse link
G Tcf21 transcription factor 21 involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:10944221) 		UniProt
Ensembl
RGD		 PMID:10944221 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:22,701,353...22,704,212
Ensembl chr 1:22,701,353...22,704,202 		JBrowse link
G Tet2 tet methylcytosine dioxygenase 2 acts_upstream_of_or_within ISO MGI:5301343 (PMID:21803851) RGD PMID:21803851 NCBI chr 2:221,988,645...222,072,813
Ensembl chr 2:221,988,645...222,072,534 		JBrowse link
G Tlx1 T-cell leukemia, homeobox 1 acts_upstream_of_or_within ISO MGI:3581680|MGI:97495 (PMID:11356032), (PMID:15944191) RGD PMID:11356032 PMID:15944191 NCBI chr 1:244,005,057...244,011,318
Ensembl chr 1:244,005,057...244,011,318 		JBrowse link
G Traf3ip2 Traf3 interacting protein 2 involved_in ISO MGI:3510784 (PMID:22585710) RGD PMID:22585710 NCBI chr20:44,565,992...44,609,240
Ensembl chr20:43,011,450...43,054,667 		JBrowse link
spleen trabecula formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slc40a1 solute carrier family 40 member 1 acts_upstream_of_or_within ISO
IEA 		MGI:1889622 (PMID:15342464)
GO_REF:0000107 		RGD
Ensembl		 PMID:15342464 GO_REF:0000107 NCBI chr 9:48,033,526...48,053,876
Ensembl chr 9:48,033,526...48,051,481 		JBrowse link
thymus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abl1 ABL proto-oncogene 1, non-receptor tyrosine kinase acts_upstream_of_or_within ISO
IEA 		MGI:2153718 (PMID:2065352)
GO_REF:0000107 		RGD
Ensembl		 PMID:2065352 GO_REF:0000107 NCBI chr 3:14,979,853...15,083,065
Ensembl chr 3:14,979,853...15,083,065 		JBrowse link
G Adrm1 ADRM1 26S proteasome ubiquitin receptor involved_in ISO (PMID:21048919) RGD PMID:21048919 NCBI chr 3:167,265,435...167,270,197
Ensembl chr 3:167,265,296...167,270,195 		JBrowse link
G Apc APC regulator of WNT signaling pathway acts_upstream_of_or_within ISO MGI:3589207|MGI:3688435 (PMID:16025118), (PMID:17002498) RGD PMID:16025118 PMID:17002498 NCBI chr18:25,828,558...25,925,511
Ensembl chr18:25,864,222...25,922,696 		JBrowse link
G Asxl1 ASXL transcriptional regulator 1 acts_upstream_of_or_within ISO
IEA 		MGI:4418244 (PMID:19861679)
GO_REF:0000107 		RGD
Ensembl		 PMID:19861679 GO_REF:0000107 NCBI chr 3:141,814,012...141,881,526
Ensembl chr 3:141,813,433...141,881,538 		JBrowse link
G Atm ATM serine/threonine kinase acts_upstream_of_or_within ISO MGI:1926343 (PMID:8843194) RGD PMID:8843194 NCBI chr 8:53,828,741...53,932,773
Ensembl chr 8:53,831,093...53,932,437 		JBrowse link
G Bcl11b BCL11 transcription factor B acts_upstream_of_or_within ISO
IEA 		MGI:2663971 (PMID:12717433)
GO_REF:0000107 		RGD
Ensembl		 PMID:12717433 GO_REF:0000107 NCBI chr 6:126,834,531...126,927,720
Ensembl chr 6:126,834,531...126,928,224 		JBrowse link
G Bcl2 BCL2, apoptosis regulator acts_upstream_of_or_within ISO MGI:1197519|MGI:1857134|MGI:2156165 (PMID:15818405), (PMID:9241272) RGD PMID:9241272 PMID:15818405 NCBI chr13:23,204,464...23,366,900
Ensembl chr13:22,684,989...22,853,743
Ensembl chr13:22,684,989...22,853,743 		JBrowse link
G Bcl2l11 Bcl2-like 11 acts_upstream_of_or_within ISO MGI:88138 (PMID:15818405) RGD PMID:15818405 NCBI chr 3:135,820,042...135,857,330
Ensembl chr 3:115,366,646...115,404,068 		JBrowse link
G Braf B-Raf proto-oncogene, serine/threonine kinase acts_upstream_of_or_within ISO MGI:97847 (PMID:18952847) RGD PMID:18952847 NCBI chr 4:69,329,772...69,476,931
Ensembl chr 4:68,384,649...68,510,463 		JBrowse link
G Cacnb4 calcium voltage-gated channel auxiliary subunit beta 4 acts_upstream_of_or_within ISO
IEA 		MGI:1856936 (PMID:5037658)
GO_REF:0000107 		RGD
Ensembl		 PMID:5037658 GO_REF:0000107 NCBI chr 3:36,906,771...37,169,165
Ensembl chr 3:36,910,427...37,168,944 		JBrowse link
G Carmil2 capping protein regulator and myosin 1 linker 2 acts_upstream_of_or_within ISO MGI:5547539 (PMID:23793062) RGD PMID:23793062 NCBI chr19:33,571,255...33,586,783
Ensembl chr19:33,574,257...33,586,965 		JBrowse link
G Ccnb2 cyclin B2 acts_upstream_of_or_within ISO MGI:2429974 (PMID:9539739) RGD PMID:9539739 NCBI chr 8:71,087,594...71,100,794
Ensembl chr 8:71,087,595...71,100,874 		JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 acts_upstream_of_or_within ISO MGI:109360|MGI:2179740 (PMID:20549734) RGD PMID:20549734 NCBI chr 1:12,312,426...12,314,869
Ensembl chr 1:12,312,160...12,314,897 		JBrowse link
G Coa5 cytochrome C oxidase assembly factor 5 acts_upstream_of_or_within ISO (PMID:36301669) RGD PMID:36301669 NCBI chr 9:39,651,459...39,664,870 JBrowse link
G Crkl CRK like proto-oncogene, adaptor protein acts_upstream_of_or_within ISO MGI:98493 (PMID:16399080) RGD PMID:16399080 NCBI chr11:83,528,788...83,563,214
Ensembl chr11:83,526,530...83,563,238 		JBrowse link
G Ctc1 CST telomere replication complex component 1 acts_upstream_of_or_within ISO
IEA 		MGI:5427642 (PMID:22531781)
GO_REF:0000107 		RGD
Ensembl		 PMID:22531781 GO_REF:0000107 NCBI chr10:53,714,614...53,735,298
Ensembl chr10:53,714,644...53,735,298 		JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within ISO
IEA 		MGI:1858008 (PMID:16025118)
GO_REF:0000107 		RGD
Ensembl		 PMID:16025118 GO_REF:0000107 NCBI chr 8:120,640,008...120,667,110
Ensembl chr 8:120,639,995...120,667,111 		JBrowse link
G Ephb3 Eph receptor B3 involved_in ISO
IEA 		(PMID:19598115)
GO_REF:0000107 		RGD
Ensembl		 PMID:19598115 GO_REF:0000107 NCBI chr11:79,840,668...79,859,345
Ensembl chr11:79,840,668...79,859,370 		JBrowse link
G Fadd Fas associated via death domain involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
UniProtKB:Q9QZL0 (PMID:21876153) 		UniProt
Ensembl
RGD		 PMID:21876153 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:199,743,200...199,745,746
Ensembl chr 1:199,739,994...199,745,653 		JBrowse link
G Fgf10 fibroblast growth factor 10 involved_in ISO
IEA 		(PMID:17969154)
GO_REF:0000107 		RGD
Ensembl		 PMID:17969154 GO_REF:0000107 NCBI chr 2:50,801,171...50,878,218
Ensembl chr 2:50,800,992...50,876,866 		JBrowse link
G Fgf3 fibroblast growth factor 3 acts_upstream_of_or_within ISO MGI:3027990 (PMID:17000704) RGD PMID:17000704 NCBI chr 1:200,001,162...200,005,539
Ensembl chr 1:200,001,261...200,005,187 		JBrowse link
G Foxe1 forkhead box E1 involved_in ISO
IEA 		(PMID:15494458)
GO_REF:0000107 		RGD
Ensembl		 PMID:15494458 GO_REF:0000107 NCBI chr 5:60,630,027...60,632,835
Ensembl chr 5:60,630,027...60,632,835 		JBrowse link
G Foxi3 forkhead box I3 involved_in ISO (PMID:31412026) RGD PMID:31412026 NCBI chr 4:102,933,487...102,937,655
Ensembl chr 4:102,933,409...102,937,655 		JBrowse link
G Foxn1 forkhead box N1 acts_upstream_of_or_within IMP
IEA
ISO 		GO_REF:0000107
MGI:5297717 (PMID:22072979) 		Ensembl
RGD		 PMID:22072979 PMID:8790387 GO_REF:0000107, RGD:1300512 NCBI chr10:63,251,400...63,273,710
Ensembl chr10:63,251,400...63,273,710 		JBrowse link
G Gata3 GATA binding protein 3 acts_upstream_of_or_within ISO
IEA 		MGI:2683927 (PMID:17082577)
GO_REF:0000107 		RGD
Ensembl		 PMID:17082577 GO_REF:0000107 NCBI chr17:68,643,760...68,666,000
Ensembl chr17:68,643,873...68,665,391 		JBrowse link
G Gba1 glucosylceramidase beta 1 acts_upstream_of_or_within ISO (PMID:22665763) RGD PMID:22665763 NCBI chr 2:174,609,437...174,615,457
Ensembl chr 2:174,609,403...174,618,263 		JBrowse link
G Hand2 heart and neural crest derivatives expressed 2 involved_in IEA
ISO 		GO_REF:0000107
(PMID:19008477) 		Ensembl
RGD		 PMID:19008477 GO_REF:0000107 NCBI chr16:32,917,448...32,920,791
Ensembl chr16:32,917,823...32,919,891 		JBrowse link
G Hes1 hes family bHLH transcription factor 1 involved_in IEA
ISO 		GO_REF:0000107
(PMID:20122914) 		Ensembl
RGD		 PMID:20122914 GO_REF:0000107 NCBI chr11:70,705,763...70,708,176
Ensembl chr11:70,705,764...70,708,192 		JBrowse link
G Hnrnpk heterogeneous nuclear ribonucleoprotein K IEP RGD PMID:16488668 RGD:10002779 NCBI chr17:6,262,936...6,275,001
Ensembl chr17:6,262,998...6,274,997 		JBrowse link
G Hoxa3 homeobox A3 acts_upstream_of_or_within ISO
IEA 		MGI:1857992|MGI:96184|MGI:96207|MGI:97485 (PMID:11476574), (PMID:7635047), (PMID:9520319)
GO_REF:0000107 		RGD
Ensembl		 PMID:7635047 PMID:9520319 PMID:11476574 GO_REF:0000107 NCBI chr 4:81,269,243...81,313,218
Ensembl chr 4:81,269,243...81,313,218 		JBrowse link
G Ikzf1 IKAROS family zinc finger 1 acts_upstream_of_or_within ISO MGI:2158738 (PMID:7923373) RGD PMID:7923373 NCBI chr14:86,255,065...86,340,839
Ensembl chr14:86,255,065...86,342,416 		JBrowse link
G Jarid2 jumonji and AT-rich interaction domain containing 2 acts_upstream_of_or_within ISO MGI:1856923 (PMID:9376320) RGD PMID:9376320 NCBI chr17:19,777,487...19,957,696
Ensembl chr17:19,777,266...19,955,690 		JBrowse link
G Lmo4 LIM domain only 4 acts_upstream_of_or_within ISO MGI:1306784 (PMID:20549734) RGD PMID:20549734 NCBI chr 2:233,264,180...233,280,881
Ensembl chr 2:233,264,182...233,280,880 		JBrowse link
G Mad1l1 mitotic arrest deficient 1 like 1 acts_upstream_of_or_within ISO
IEA 		(PMID:11313860)
GO_REF:0000107 		RGD
Ensembl		 PMID:11313860 GO_REF:0000107 NCBI chr12:14,320,892...14,630,750
Ensembl chr12:14,320,892...14,630,703 		JBrowse link
G Mafb MAF bZIP transcription factor B acts_upstream_of_or_within ISO
IEA 		MGI:3663168 (PMID:19164599)
GO_REF:0000107 		RGD
Ensembl		 PMID:19164599 GO_REF:0000107 NCBI chr 3:148,998,111...149,000,031
Ensembl chr 3:148,998,122...149,000,031 		JBrowse link
G Map2k1 mitogen activated protein kinase kinase 1 acts_upstream_of_or_within ISO
IEA 		MGI:1346867 (PMID:18952847)
GO_REF:0000107 		RGD
Ensembl		 PMID:18952847 GO_REF:0000107 NCBI chr 8:73,578,747...73,650,184
Ensembl chr 8:64,683,449...64,755,147 		JBrowse link
G Map2k2 mitogen activated protein kinase kinase 2 acts_upstream_of_or_within ISO
IEA 		MGI:1346866 (PMID:18952847)
GO_REF:0000107 		RGD
Ensembl		 PMID:18952847 GO_REF:0000107 NCBI chr 7:8,590,729...8,610,279
Ensembl chr 7:8,580,905...8,610,243 		JBrowse link
G Mapk1 mitogen activated protein kinase 1 acts_upstream_of_or_within ISO
IEA 		MGI:1346859 (PMID:18952847)
GO_REF:0000107 		RGD
Ensembl		 PMID:18952847 GO_REF:0000107 NCBI chr11:97,462,025...97,529,193
Ensembl chr11:83,957,813...84,023,616 		JBrowse link
G Mapk3 mitogen activated protein kinase 3 acts_upstream_of_or_within ISO MGI:1346858 (PMID:18952847) RGD PMID:18952847 NCBI chr 1:190,797,189...190,803,411
Ensembl chr 1:181,366,637...181,372,863 		JBrowse link
G Myb MYB proto-oncogene, transcription factor acts_upstream_of_or_within ISO
IEA 		MGI:3047076 (PMID:17927961)
GO_REF:0000107 		RGD
Ensembl		 PMID:17927961 GO_REF:0000107 NCBI chr 1:15,939,771...15,973,367
Ensembl chr 1:15,939,761...15,973,057 		JBrowse link
G Nfatc3 nuclear factor of activated T-cells 3 acts_upstream_of_or_within ISO MGI:2182778 (PMID:9768749) RGD PMID:9768749 NCBI chr19:33,960,643...34,035,150
Ensembl chr19:33,960,852...34,035,150 		JBrowse link
G Nr1h3 nuclear receptor subfamily 1, group H, member 3 IEP RGD PMID:17341476 RGD:401827282 NCBI chr 3:77,158,808...77,168,907
Ensembl chr 3:77,158,808...77,168,722 		JBrowse link
G Pax1 paired box 1 acts_upstream_of_or_within ISO
IEA 		MGI:96175 (PMID:11476574)
GO_REF:0000107 		RGD
Ensembl		 PMID:11476574 GO_REF:0000107 NCBI chr 3:134,792,330...134,801,637
Ensembl chr 3:134,789,182...134,801,636 		JBrowse link
G Pbx1 PBX homeobox 1 acts_upstream_of_or_within ISO
IEA 		MGI:2155612 (PMID:15581866)
GO_REF:0000107 		RGD
Ensembl		 PMID:15581866 GO_REF:0000107 NCBI chr13:82,811,664...83,121,447
Ensembl chr13:80,278,770...80,588,594 		JBrowse link
G Prdx2 peroxiredoxin 2 acts_upstream_of_or_within ISO MGI:2668456 (PMID:15259009) RGD PMID:15259009 NCBI chr19:23,180,927...23,186,217
Ensembl chr19:23,180,930...23,186,194 		JBrowse link
G Prkdc protein kinase, DNA-activated, catalytic subunit IMP RGD PMID:22981234 RGD:8696027 NCBI chr11:85,040,790...85,258,357
Ensembl chr11:85,040,792...85,257,952 		JBrowse link
G Psen1 presenilin 1 acts_upstream_of_or_within ISO
IEA 		MGI:109284|MGI:1930934 (PMID:17698590)
GO_REF:0000107 		RGD
Ensembl		 PMID:17698590 GO_REF:0000107 NCBI chr 6:103,323,052...103,375,088
Ensembl chr 6:103,323,120...103,371,650 		JBrowse link
G Psen2 presenilin 2 acts_upstream_of_or_within ISO MGI:1202717 (PMID:17698590) RGD PMID:17698590 NCBI chr13:91,967,506...91,993,240
Ensembl chr13:91,967,983...91,993,174 		JBrowse link
G Psmb9 proteasome 20S subunit beta 9 IEP RGD PMID:18457575 RGD:9850287 NCBI chr20:4,667,044...4,672,512
Ensembl chr20:4,666,046...4,672,512 		JBrowse link
G Raf1 Raf-1 proto-oncogene, serine/threonine kinase acts_upstream_of_or_within ISO
IEA 		MGI:88190 (PMID:18952847)
GO_REF:0000107 		RGD
Ensembl		 PMID:18952847 GO_REF:0000107 NCBI chr 4:148,679,534...148,740,265
Ensembl chr 4:148,679,530...148,740,317 		JBrowse link
G Rag1 recombination activating 1 acts_upstream_of_or_within ISO
IEA 		MGI:1353616 (PMID:18684012)
GO_REF:0000107 		RGD
Ensembl		 PMID:18684012 GO_REF:0000107 NCBI chr 3:108,372,087...108,383,184
Ensembl chr 3:87,917,004...87,928,291 		JBrowse link
G Ripk3 receptor-interacting serine-threonine kinase 3 involved_in ISS
ISO 		GO_REF:0000024
UniProtKB:Q61160 (PMID:21876153) 		UniProt
RGD		 PMID:21876153 GO_REF:0000024 NCBI chr15:29,283,153...29,292,107
Ensembl chr15:29,283,145...29,292,121 		JBrowse link
G Sco1 synthesis of cytochrome C oxidase 1 acts_upstream_of_or_within ISO (PMID:36301669) RGD PMID:36301669 NCBI chr10:51,744,656...51,757,246
Ensembl chr10:51,744,656...51,757,237 		JBrowse link
G Shh sonic hedgehog signaling molecule involved_in ISS
ISO
IEA 		GO_REF:0000024
(PMID:19109233)
GO_REF:0000107 		UniProt
RGD
Ensembl		 PMID:19109233 GO_REF:0000024 GO_REF:0000107 NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170 		JBrowse link
G Six1 SIX homeobox 1 acts_upstream_of_or_within ISO
IEA 		MGI:106034|MGI:2655195 (PMID:16530750)
GO_REF:0000107 		RGD
Ensembl		 PMID:16530750 GO_REF:0000107 NCBI chr 6:91,746,739...91,751,975
Ensembl chr 6:91,746,739...91,751,975 		JBrowse link
G Six4 SIX homeobox 4 acts_upstream_of_or_within ISO MGI:102780 (PMID:16530750) RGD PMID:16530750 NCBI chr 6:91,802,328...91,816,002
Ensembl chr 6:91,802,329...91,815,992 		JBrowse link
G Slc46a2 solute carrier family 46, member 2 acts_upstream_of_or_within ISO
IEA 		MGI:97848 (PMID:18684012)
GO_REF:0000107 		RGD
Ensembl		 PMID:18684012 GO_REF:0000107 NCBI chr 5:74,800,226...74,808,128
Ensembl chr 5:74,800,226...74,808,128 		JBrowse link
G Srf serum response factor acts_upstream_of_or_within ISO
IEA 		MGI:3522206 (PMID:18952847)
GO_REF:0000107 		RGD
Ensembl		 PMID:18952847 GO_REF:0000107 NCBI chr 9:14,426,453...14,435,734
Ensembl chr 9:14,426,472...14,435,733 		JBrowse link
G Tbx1 T-box transcription factor 1 involved_in
acts_upstream_of_or_within 		ISS
ISO 		GO_REF:0000024
(PMID:31412026)
MGI:3664784 (PMID:17916582)
(PMID:14585638) 		UniProt
RGD		 PMID:14585638 PMID:17916582 PMID:31412026 GO_REF:0000024 NCBI chr11:82,409,275...82,419,058
Ensembl chr11:82,409,275...82,418,380 		JBrowse link
G Tgfbr1 transforming growth factor, beta receptor 1 acts_upstream_of_or_within ISO
IEA 		MGI:2386570|MGI:2388050 (PMID:17078885)
GO_REF:0000107 		RGD
Ensembl		 PMID:17078885 GO_REF:0000107 NCBI chr 5:61,653,773...61,710,777
Ensembl chr 5:61,653,233...61,710,777 		JBrowse link
G Tyr tyrosinase acts_upstream_of_or_within ISO
IEA 		MGI:1856308 (PMID:10890980)
GO_REF:0000107 		RGD
Ensembl		 PMID:10890980 GO_REF:0000107 NCBI chr 1:141,115,036...141,210,207
Ensembl chr 1:141,115,036...141,210,207 		JBrowse link
G Zbtb1 zinc finger and BTB domain containing 1 involved_in ISO
IEA 		(PMID:22201126)
GO_REF:0000107 		RGD
Ensembl		 PMID:22201126 GO_REF:0000107 NCBI chr 6:95,096,838...95,125,811
Ensembl chr 6:95,096,387...95,118,996 		JBrowse link
G Zmpste24 zinc metallopeptidase STE24 acts_upstream_of_or_within ISO
IEA 		MGI:2180033 (PMID:11923874)
GO_REF:0000107 		RGD
Ensembl		 PMID:11923874 GO_REF:0000107 NCBI chr 5:134,627,218...134,660,360
Ensembl chr 5:134,627,229...134,660,110 		JBrowse link
thymus epithelium morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aire autoimmune regulator involved_in IBA
ISO
IEA 		GO_REF:0000033
(PMID:19015306)
GO_REF:0000107 		GO_Central
RGD
Ensembl		 PMID:19015306 GO_REF:0000033 GO_REF:0000107 NCBI chr20:10,636,058...10,651,060
Ensembl chr20:10,636,123...10,651,060 		JBrowse link
G Foxn1 forkhead box N1 involved_in ISO
IEA 		(PMID:21109991)
GO_REF:0000107 		RGD
Ensembl		 PMID:21109991 GO_REF:0000107 NCBI chr10:63,251,400...63,273,710
Ensembl chr10:63,251,400...63,273,710 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20543
    immune system process 3133
      immune system development 241
        hematopoietic or lymphoid organ development 132
          bone marrow development 11
          bursa of Fabricius development 0
          head kidney development + 0
          lymph gland development + 0
          lymph node development 25
          mucosa-associated lymphoid tissue development + 13
          spleen development + 54
          thymus development + 64
Path 2
Term Annotations click to browse term
  biological_process 20543
    developmental process 7160
      anatomical structure development 6656
        multicellular organism development 5362
          system development 4644
            immune system development 241
              hematopoietic or lymphoid organ development 132
                bone marrow development 11
                bursa of Fabricius development 0
                head kidney development + 0
                lymph gland development + 0
                lymph node development 25
                mucosa-associated lymphoid tissue development + 13
                spleen development + 54
                thymus development + 64
paths to the root