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ONTOLOGY REPORT - ANNOTATIONS


Term:hematopoietic or lymphoid organ development
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Accession:GO:0048534 term browser browse the term
Definition:The process whose specific outcome is the progression of any organ involved in hematopoiesis (also known as hemopoiesis) or lymphoid cell activation over time, from its formation to the mature structure. Such development includes differentiation of resident cell types (stromal cells) and of migratory cell types dependent on the unique microenvironment afforded by the organ for their proper differentiation.
Synonyms:exact_synonym: haematopoietic or lymphoid organ development;   haemopoietic or lymphoid organ development;   hemopoietic or lymphoid organ development



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hematopoietic or lymphoid organ development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asxl1 ASXL transcriptional regulator 1 acts_upstream_of_or_within ISO MGI:4418244 (MGI:4418016|PMID:19861679) RGD PMID:19861679 MGI:4418016 NCBI chr 3:141,814,012...141,881,526
Ensembl chr 3:141,813,433...141,881,538
JBrowse link
G Ltbr lymphotoxin beta receptor involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 4:158,108,884...158,115,339
Ensembl chr 4:158,108,886...158,121,539
JBrowse link
bone marrow development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Asxl1 ASXL transcriptional regulator 1 acts_upstream_of_or_within ISO MGI:4418244 (MGI:4418016|PMID:19861679) RGD PMID:19861679 MGI:4418016 NCBI chr 3:141,814,012...141,881,526
Ensembl chr 3:141,813,433...141,881,538
JBrowse link
G Ctc1 CST telomere replication complex component 1 acts_upstream_of_or_within ISO MGI:5427642 (MGI:5426340|PMID:22531781) RGD PMID:22531781 MGI:5426340 NCBI chr10:53,714,614...53,735,298
Ensembl chr10:53,714,644...53,735,298
JBrowse link
G Hoxb4 homeo box B4 acts_upstream_of_or_within ISO MGI:3045971 (MGI:3045582|PMID:14962901) RGD PMID:14962901 MGI:3045582 NCBI chr10:81,284,552...81,287,134
Ensembl chr10:81,284,552...81,287,128
JBrowse link
G Lipa lipase A, lysosomal acid type acts_upstream_of_or_within
involved_in
ISO
IEA
MGI:2451080 (MGI:4455079|PMID:20348241)
GO_REF:0000107
RGD
Ensembl
PMID:20348241 GO_REF:0000107 MGI:4455079 NCBI chr 1:232,024,351...232,057,735
Ensembl chr 1:232,024,356...232,057,633
JBrowse link
G Lrp5 LDL receptor related protein 5 involved_in ISO
IBA
(PMID:17680723)
GO_REF:0000033
RGD
GO_Central
PMID:17680723 GO_REF:0000033 NCBI chr 1:200,814,247...200,917,581
Ensembl chr 1:200,814,250...200,917,581
JBrowse link
G Lrrc17 leucine rich repeat containing 17 involved_in ISO (MGI:3850892|PMID:19336404) RGD PMID:19336404 MGI:3850892 NCBI chr 4:13,501,428...13,531,845
Ensembl chr 4:13,501,436...13,531,845
JBrowse link
G Mir188 microRNA 188 acts_upstream_of_or_within ISO (MGI:5643971|PMID:25751060) RGD PMID:25751060 MGI:5643971 NCBI chr  X:15,247,715...15,247,794
Ensembl chr  X:15,247,715...15,247,794
JBrowse link
G Ptprc protein tyrosine phosphatase, receptor type, C involved_in ISO (PMID:21911094) RGD PMID:21911094 NCBI chr13:49,596,193...49,708,283
Ensembl chr13:49,596,193...49,708,692
JBrowse link
G Sbds Sbds, ribosome maturation factor involved_in ISO (PMID:15342903) RGD PMID:15342903 NCBI chr12:26,420,410...26,429,650
Ensembl chr12:26,420,414...26,429,649
JBrowse link
G Tp53 tumor protein p53 involved_in ISO
IEA
(PMID:30146126)
GO_REF:0000107
RGD
Ensembl
PMID:30146126 GO_REF:0000107 NCBI chr10:54,300,070...54,311,525
Ensembl chr10:54,300,048...54,311,524
JBrowse link
lymph node development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ccl21 C-C motif chemokine ligand 21 acts_upstream_of_or_within ISO MGI:1857881 (MGI:2660934|PMID:12732660) RGD PMID:12732660 MGI:2660934 NCBI chr 5:56,980,557...56,981,661
Ensembl chr 5:56,980,558...56,981,686
JBrowse link
G Cd248 CD248 molecule acts_upstream_of_or_within ISO MGI:3625491 (MGI:4838940|PMID:20432232) RGD PMID:20432232 MGI:4838940 NCBI chr 1:202,373,676...202,376,240
Ensembl chr 1:202,373,676...202,376,240
JBrowse link
G Cd2ap CD2-associated protein acts_upstream_of_or_within
involved_in
ISO
IEA
MGI:2664945 (MGI:5554503|PMID:24218450)
GO_REF:0000107
RGD
Ensembl
PMID:24218450 GO_REF:0000107 MGI:5554503 NCBI chr 9:18,086,744...18,182,744
Ensembl chr 9:18,086,984...18,182,199
JBrowse link
G Cxcl13 C-X-C motif chemokine ligand 13 involved_in
acts_upstream_of_or_within
ISO (MGI:4436841|PMID:19783990)
MGI:2384500 (MGI:2660934|PMID:12732660)
RGD PMID:12732660 PMID:19783990 MGI:2660934 MGI:4436841 NCBI chr14:13,608,894...13,613,965
Ensembl chr14:13,608,902...13,613,933
JBrowse link
G Cxcr5 C-X-C motif chemokine receptor 5 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2158677 (MGI:2660934|PMID:12732660)
Ensembl
RGD
PMID:12732660 GO_REF:0000107 MGI:2660934 NCBI chr 8:44,842,098...44,858,425
Ensembl chr 8:44,843,413...44,857,893
JBrowse link
G Fadd Fas associated via death domain involved_in ISS
ISO
GO_REF:0000024
UniProtKB:Q9QZL0 (MGI:5291865|PMID:21876153)
UniProt
RGD
PMID:21876153 GO_REF:0000024 MGI:5291865 NCBI chr 1:199,743,200...199,745,746
Ensembl chr 1:199,739,994...199,745,653
JBrowse link
G Flt3 Fms related receptor tyrosine kinase 3 acts_upstream_of_or_within ISO MGI:3628823 (MGI:4452060|PMID:20457904) RGD PMID:20457904 MGI:4452060 NCBI chr12:7,623,930...7,699,474
Ensembl chr12:7,623,930...7,699,474
JBrowse link
G Ikzf1 IKAROS family zinc finger 1 acts_upstream_of_or_within ISO MGI:2158738 (MGI:68746|PMID:7923373) RGD PMID:7923373 MGI:68746 NCBI chr14:86,255,065...86,340,839
Ensembl chr14:86,255,065...86,342,416
JBrowse link
G Il15 interleukin 15 acts_upstream_of_or_within
involved_in
ISO
IEA
MGI:2136897 (MGI:1354083|PMID:10704459)
GO_REF:0000107
RGD
Ensembl
PMID:10704459 GO_REF:0000107 MGI:1354083 NCBI chr19:25,640,025...25,706,818
Ensembl chr19:25,640,251...25,706,820
JBrowse link
G Il7r interleukin 7 receptor acts_upstream_of_or_within ISO MGI:1857198 (MGI:2660934|PMID:12732660) RGD PMID:12732660 MGI:2660934 NCBI chr 2:58,452,393...58,477,757
Ensembl chr 2:58,454,217...58,477,757
JBrowse link
G Lta lymphotoxin alpha acts_upstream_of_or_within ISO MGI:1857215|MGI:1860953|MGI:1860954|MGI:1860957 (MGI:1098089|PMID:9368616), (MGI:1203431|PMID:9565643), (MGI:1343015|PMID:10415063), (MGI:65999|PMID:8171322), (MGI:75691|PMID:7636227) RGD PMID:7636227 PMID:8171322 PMID:9368616 PMID:9565643 PMID:10415063 MGI:1098089 MGI:1203431 MGI:1343015 MGI:65999 MGI:75691 NCBI chr20:3,618,853...3,621,324
Ensembl chr20:3,618,853...3,620,859
JBrowse link
G Ltb lymphotoxin beta acts_upstream_of_or_within ISO MGI:1860955|MGI:1860970 (MGI:1095831|PMID:9256477), (MGI:87095|PMID:9133428) RGD PMID:9133428 PMID:9256477 MGI:1095831 MGI:87095 NCBI chr20:3,627,536...3,629,381
Ensembl chr20:3,627,537...3,629,381
JBrowse link
G Nkx2-3 NK2 homeobox 3 acts_upstream_of_or_within ISO MGI:2386680|MGI:2448069 (MGI:1858364|PMID:10790368), (MGI:1888604|PMID:10926756) RGD PMID:10790368 PMID:10926756 MGI:1858364 MGI:1888604 NCBI chr 1:242,478,130...242,481,083
Ensembl chr 1:242,478,130...242,481,083
JBrowse link
G Pdpn podoplanin involved_in ISO
ISS
(MGI:5644359|PMID:25347465)
GO_REF:0000024
RGD
UniProt
PMID:25347465 GO_REF:0000024 MGI:5644359 NCBI chr 5:155,601,691...155,635,656
Ensembl chr 5:155,601,691...155,635,656
JBrowse link
G Polb DNA polymerase beta acts_upstream_of_or_within ISO MGI:5427084 (MGI:5553198|PMID:24388753) RGD PMID:24388753 MGI:5553198 NCBI chr16:69,379,438...69,402,710
Ensembl chr16:69,379,400...69,404,812
JBrowse link
G Rc3h1 ring finger and CCCH-type domains 1 acts_upstream_of_or_within ISO MGI:2442789 (MGI:5486592|PMID:23583643) RGD PMID:23583643 MGI:5486592 NCBI chr13:73,174,075...73,245,762
Ensembl chr13:73,173,946...73,238,839
JBrowse link
G Rc3h2 ring finger and CCCH-type domains 2 acts_upstream_of_or_within ISO MGI:2685397 (MGI:5486592|PMID:23583643) RGD PMID:23583643 MGI:5486592 NCBI chr 3:21,121,531...21,186,711
Ensembl chr 3:21,110,679...21,179,933
JBrowse link
G Ripk3 receptor-interacting serine-threonine kinase 3 involved_in ISS
ISO
GO_REF:0000024
UniProtKB:Q61160 (MGI:5291865|PMID:21876153)
UniProt
RGD
PMID:21876153 GO_REF:0000024 MGI:5291865 NCBI chr15:29,283,153...29,292,107
Ensembl chr15:29,283,145...29,292,121
JBrowse link
G Rorc RAR-related orphan receptor C acts_upstream_of_or_within ISO MGI:3026635 (MGI:2686818|PMID:14691482) RGD PMID:14691482 MGI:2686818 NCBI chr 2:182,009,707...182,034,910
Ensembl chr 2:182,009,286...182,034,907
JBrowse link
G Spns2 SPNS lysolipid transporter 2, sphingosine-1-phosphate acts_upstream_of_or_within ISO MGI:4460276 (MGI:5490425|PMID:23180825) RGD PMID:23180825 MGI:5490425 NCBI chr10:57,067,348...57,105,969
Ensembl chr10:57,066,897...57,105,957
JBrowse link
G Tgfb1 transforming growth factor, beta 1 acts_upstream_of_or_within ISO MGI:1857258 (MGI:51412|PMID:1436033) RGD PMID:1436033 MGI:51412 NCBI chr 1:81,196,532...81,212,848
Ensembl chr 1:81,196,532...81,212,847
JBrowse link
G Tnfrsf11a TNF receptor superfamily member 11A acts_upstream_of_or_within
involved_in
ISO
IBA
MGI:1860238 (MGI:1345929|PMID:10500098)
GO_REF:0000033
RGD
GO_Central
PMID:10500098 GO_REF:0000033 MGI:1345929 NCBI chr13:21,928,370...21,986,719
Ensembl chr13:21,928,408...21,986,695
JBrowse link
G Tox thymocyte selection-associated high mobility group box acts_upstream_of_or_within ISO MGI:3773716 (MGI:4834966|PMID:20818394) RGD PMID:20818394 MGI:4834966 NCBI chr 5:19,874,994...20,171,272
Ensembl chr 5:19,874,467...20,171,272
JBrowse link
G Traf3ip2 Traf3 interacting protein 2 involved_in ISO MGI:3510784 (MGI:5438168|PMID:22585710) RGD PMID:22585710 MGI:5438168 NCBI chr20:43,011,405...43,054,654
Ensembl chr20:43,011,450...43,054,667
JBrowse link
mucosa-associated lymphoid tissue development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nkx2-3 NK2 homeobox 3 acts_upstream_of_or_within ISO MGI:2448069 (MGI:1888604|PMID:10926756) RGD PMID:10926756 MGI:1888604 NCBI chr 1:242,478,130...242,481,083
Ensembl chr 1:242,478,130...242,481,083
JBrowse link
G Rorc RAR-related orphan receptor C acts_upstream_of_or_within ISO MGI:3026635 (MGI:3047471|PMID:15247480) RGD PMID:15247480 MGI:3047471 NCBI chr 2:182,009,707...182,034,910
Ensembl chr 2:182,009,286...182,034,907
JBrowse link
Peyer's patch development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase acts_upstream_of_or_within
involved_in
ISO
IEA
MGI:1857117|MGI:2683027 (MGI:3640719|PMID:10720488)
GO_REF:0000107
RGD
Ensembl
PMID:10720488 GO_REF:0000107 MGI:3640719 NCBI chr 3:152,398,745...152,422,854
Ensembl chr 3:152,398,747...152,447,088
JBrowse link
G Cacnb4 calcium voltage-gated channel auxiliary subunit beta 4 acts_upstream_of_or_within ISO MGI:1856936 (MGI:53759|PMID:5037658) RGD PMID:5037658 MGI:53759 NCBI chr 3:36,906,771...37,169,165
Ensembl chr 3:36,910,427...37,168,944
JBrowse link
G Ceacam1 CEA cell adhesion molecule 1 acts_upstream_of_or_within ISO MGI:3053071|MGI:5609428 (MGI:5451119|PMID:23123061) RGD PMID:23123061 MGI:5451119 NCBI chr 1:81,043,595...81,060,050
Ensembl chr 1:81,043,595...81,059,992
JBrowse link
G Id2 inhibitor of DNA binding 2 acts_upstream_of_or_within ISO MGI:98510 (MGI:3759740|PMID:17452521) RGD PMID:17452521 MGI:3759740 NCBI chr 6:41,740,556...41,742,393
Ensembl chr 6:41,728,946...41,744,400
JBrowse link
G Ikzf1 IKAROS family zinc finger 1 acts_upstream_of_or_within ISO MGI:2158738 (MGI:68746|PMID:7923373) RGD PMID:7923373 MGI:68746 NCBI chr14:86,255,065...86,340,839
Ensembl chr14:86,255,065...86,342,416
JBrowse link
G Nkx2-3 NK2 homeobox 3 acts_upstream_of_or_within ISO MGI:2386680 (MGI:1858364|PMID:10790368) RGD PMID:10790368 MGI:1858364 NCBI chr 1:242,478,130...242,481,083
Ensembl chr 1:242,478,130...242,481,083
JBrowse link
G Rorc RAR-related orphan receptor C involved_in ISO (MGI:2686818|PMID:14691482) RGD PMID:14691482 MGI:2686818 NCBI chr 2:182,009,707...182,034,910
Ensembl chr 2:182,009,286...182,034,907
JBrowse link
G Stat5a signal transducer and activator of transcription 5A acts_upstream_of_or_within ISO MGI:103035 (MGI:3054293|PMID:15294943) RGD PMID:15294943 MGI:3054293 NCBI chr10:85,785,537...85,809,869
Ensembl chr10:85,785,537...85,809,866
JBrowse link
G Stat5b signal transducer and activator of transcription 5B involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:103036 (MGI:3054293|PMID:15294943)
Ensembl
RGD
PMID:15294943 GO_REF:0000107 MGI:3054293 NCBI chr10:85,704,841...85,775,856
Ensembl chr10:85,705,670...85,775,668
JBrowse link
G Tcf3 transcription factor 3 acts_upstream_of_or_within ISO MGI:98510 (MGI:3759740|PMID:17452521) RGD PMID:17452521 MGI:3759740 NCBI chr 7:9,280,571...9,302,315
Ensembl chr 7:9,280,571...9,302,314
JBrowse link
G Tox thymocyte selection-associated high mobility group box acts_upstream_of_or_within ISO MGI:3773716 (MGI:4834966|PMID:20818394) RGD PMID:20818394 MGI:4834966 NCBI chr 5:19,874,994...20,171,272
Ensembl chr 5:19,874,467...20,171,272
JBrowse link
Peyer's patch morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Artn artemin involved_in ISO (MGI:3708043|PMID:17322904) RGD PMID:17322904 MGI:3708043 NCBI chr 5:131,458,596...131,470,193
Ensembl chr 5:131,464,756...131,468,025
JBrowse link
G Foxl1 forkhead box L1 acts_upstream_of_or_within ISO MGI:2180191 (MGI:2654286|PMID:12648490) RGD PMID:12648490 MGI:2654286 NCBI chr19:49,197,269...49,200,682
Ensembl chr19:49,197,400...49,198,425
JBrowse link
G Ret ret proto-oncogene involved_in ISO (MGI:3708043|PMID:17322904) RGD PMID:17322904 MGI:3708043 NCBI chr 4:151,325,969...151,368,176
Ensembl chr 4:151,326,431...151,368,176
JBrowse link
spleen development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abl1 ABL proto-oncogene 1, non-receptor tyrosine kinase acts_upstream_of_or_within ISO MGI:2153718 (MGI:2153797|PMID:2065352) RGD PMID:2065352 MGI:2153797 NCBI chr 3:14,979,853...15,083,065
Ensembl chr 3:14,979,853...15,083,065
JBrowse link
G Adam17 ADAM metallopeptidase domain 17 involved_in ISO (MGI:3828349|PMID:17371977) RGD PMID:17371977 MGI:3828349 NCBI chr 6:40,872,936...40,920,700
Ensembl chr 6:40,872,856...40,920,639
JBrowse link
G Ahr aryl hydrocarbon receptor involved_in ISO (MGI:72762|PMID:7732381), (MGI:81320|PMID:8692887) RGD PMID:7732381 PMID:8692887 MGI:72762 MGI:81320 NCBI chr 6:52,234,089...52,271,568
Ensembl chr 6:52,234,089...52,271,568
JBrowse link
G Barx1 BARX homeobox 1 acts_upstream_of_or_within ISO MGI:3578634 (MGI:3766872|PMID:17855428) RGD PMID:17855428 MGI:3766872 NCBI chr17:15,990,412...15,993,887
Ensembl chr17:15,990,412...15,993,887
JBrowse link
G Bcl2 BCL2, apoptosis regulator acts_upstream_of_or_within
involved_in
ISO
IEA
MGI:1197519|MGI:2156165 (MGI:3767491|PMID:15818405)
GO_REF:0000107
RGD
Ensembl
PMID:15818405 GO_REF:0000107 MGI:3767491 NCBI chr13:22,689,783...22,853,920
Ensembl chr13:22,684,989...22,853,743
Ensembl chr13:22,684,989...22,853,743
JBrowse link
G Bcl2l11 Bcl2-like 11 acts_upstream_of_or_within ISO MGI:88138 (MGI:3767491|PMID:15818405) RGD PMID:15818405 MGI:3767491 NCBI chr 3:115,366,783...115,404,068
Ensembl chr 3:115,366,646...115,404,068
JBrowse link
G Bcl3 BCL3, transcription coactivator acts_upstream_of_or_within ISO MGI:2158443 (MGI:3655550|PMID:10586052) RGD PMID:10586052 MGI:3655550 NCBI chr 1:79,471,368...79,485,908
Ensembl chr 1:79,471,369...79,485,607
JBrowse link
G Cacnb4 calcium voltage-gated channel auxiliary subunit beta 4 acts_upstream_of_or_within ISO MGI:1856936 (MGI:53759|PMID:5037658) RGD PMID:5037658 MGI:53759 NCBI chr 3:36,906,771...37,169,165
Ensembl chr 3:36,910,427...37,168,944
JBrowse link
G Cdh17 cadherin 17 involved_in ISO (MGI:3531365|PMID:15688343) RGD PMID:15688343 MGI:3531365 NCBI chr 5:25,262,820...25,314,884
Ensembl chr 5:25,262,758...25,314,884
JBrowse link
G Cdkn2b cyclin-dependent kinase inhibitor 2B acts_upstream_of_or_within ISO MGI:97350|MGI:97495 (MGI:5424277|PMID:22560297) RGD PMID:22560297 MGI:5424277 NCBI chr 5:104,009,839...104,019,082
Ensembl chr 5:104,010,680...104,019,050
JBrowse link
G Cfc1 cripto, FRL-1, cryptic family 1 acts_upstream_of_or_within ISO MGI:2179530 (MGI:1346729|PMID:10521397) RGD PMID:10521397 MGI:1346729 NCBI chr 9:36,742,106...36,751,931
Ensembl chr 9:36,739,071...36,751,930
JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 involved_in ISO (MGI:3054669|PMID:15475956) RGD PMID:15475956 MGI:3054669 NCBI chr 1:12,312,426...12,314,869
Ensembl chr 1:12,312,160...12,314,897
JBrowse link
G Ctc1 CST telomere replication complex component 1 acts_upstream_of_or_within ISO MGI:5427642 (MGI:5426340|PMID:22531781) RGD PMID:22531781 MGI:5426340 NCBI chr10:53,714,614...53,735,298
Ensembl chr10:53,714,644...53,735,298
JBrowse link
G Dicer1 dicer 1 ribonuclease III acts_upstream_of_or_within ISO (MGI:4946569|PMID:21307095) RGD PMID:21307095 MGI:4946569 NCBI chr 6:123,627,529...123,692,278
Ensembl chr 6:123,631,250...123,693,965
JBrowse link
G Epb42 erythrocyte membrane protein band 4.2 acts_upstream_of_or_within ISO MGI:2182816 (MGI:1930623|PMID:10359562) RGD PMID:10359562 MGI:1930623 NCBI chr 3:107,979,709...107,997,932
Ensembl chr 3:107,979,713...107,997,932
JBrowse link
G Fadd Fas associated via death domain involved_in ISS
ISO
GO_REF:0000024
UniProtKB:Q9QZL0 (MGI:5291865|PMID:21876153)
UniProt
RGD
PMID:21876153 GO_REF:0000024 MGI:5291865 NCBI chr 1:199,743,200...199,745,746
Ensembl chr 1:199,739,994...199,745,653
JBrowse link
G Fas Fas cell surface death receptor acts_upstream_of_or_within ISO MGI:1856334 (MGI:3773559|PMID:18199416) RGD PMID:18199416 MGI:3773559 NCBI chr 1:231,798,963...231,832,591
Ensembl chr 1:231,798,960...231,832,591
JBrowse link
G Fgf10 fibroblast growth factor 10 acts_upstream_of_or_within ISO MGI:1859647 (MGI:3056270|PMID:15329346) RGD PMID:15329346 MGI:3056270 NCBI chr 2:50,801,171...50,878,218
Ensembl chr 2:50,800,992...50,876,866
JBrowse link
G Flt3 Fms related receptor tyrosine kinase 3 acts_upstream_of_or_within ISO MGI:96995 (MGI:5444341|PMID:22674806) RGD PMID:22674806 MGI:5444341 NCBI chr12:7,623,930...7,699,474
Ensembl chr12:7,623,930...7,699,474
JBrowse link
G Flvcr1 FLVCR choline and heme transporter 1 acts_upstream_of_or_within ISO MGI:3776022 (MGI:3775000|PMID:18258918) RGD PMID:18258918 MGI:3775000 NCBI chr13:102,586,263...102,608,647
Ensembl chr13:102,586,257...102,608,661
JBrowse link
G Hoxb4 homeo box B4 acts_upstream_of_or_within ISO MGI:3045971 (MGI:3045582|PMID:14962901) RGD PMID:14962901 MGI:3045582 NCBI chr10:81,284,552...81,287,134
Ensembl chr10:81,284,552...81,287,128
JBrowse link
G Jarid2 jumonji and AT-rich interaction domain containing 2 acts_upstream_of_or_within ISO MGI:1856923 (MGI:1096257|PMID:9376320) RGD PMID:9376320 MGI:1096257 NCBI chr17:19,777,487...19,957,696
Ensembl chr17:19,777,266...19,955,690
JBrowse link
G Kmt2a lysine methyltransferase 2A acts_upstream_of_or_within ISO MGI:95559 (MGI:5444341|PMID:22674806) RGD PMID:22674806 MGI:5444341 NCBI chr 8:45,116,763...45,193,320
Ensembl chr 8:45,118,814...45,193,181
JBrowse link
G Lipa lipase A, lysosomal acid type acts_upstream_of_or_within
involved_in
ISO
IEA
MGI:2451080 (MGI:3838096|PMID:19179613)
GO_REF:0000107
RGD
Ensembl
PMID:19179613 GO_REF:0000107 MGI:3838096 NCBI chr 1:232,024,351...232,057,735
Ensembl chr 1:232,024,356...232,057,633
JBrowse link
G Myb MYB proto-oncogene, transcription factor acts_upstream_of_or_within ISO MGI:2677048 (MGI:3846489|PMID:19360001) RGD PMID:19360001 MGI:3846489 NCBI chr 1:15,939,771...15,973,367
Ensembl chr 1:15,939,761...15,973,057
JBrowse link
G Nfkb2 nuclear factor kappa B subunit 2 acts_upstream_of_or_within ISO MGI:2179705 (MGI:3655550|PMID:10586052) RGD PMID:10586052 MGI:3655550 NCBI chr 1:245,164,586...245,173,225
Ensembl chr 1:245,165,950...245,173,213
JBrowse link
G Nfkbiz NFKB inhibitor zeta involved_in ISO MGI:3046930 (MGI:6357443|PMID:31182790) RGD PMID:31182790 MGI:6357443 NCBI chr11:44,782,676...44,810,722
Ensembl chr11:44,782,676...44,810,723
JBrowse link
G Nkx2-3 NK2 homeobox 3 acts_upstream_of_or_within ISO MGI:2386680|MGI:2448069 (MGI:1334782|PMID:10207146), (MGI:1858364|PMID:10790368), (MGI:1888604|PMID:10926756) RGD PMID:10207146 PMID:10790368 PMID:10926756 MGI:1334782 MGI:1858364 MGI:1888604 NCBI chr 1:242,478,130...242,481,083
Ensembl chr 1:242,478,130...242,481,083
JBrowse link
G Nkx2-5 NK2 homeobox 5 involved_in
acts_upstream_of_or_within
ISO
ISS
IEA
(PMID:22560297)
GO_REF:0000024
MGI:104737|MGI:97495 (MGI:5424277|PMID:22560297)
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:22560297 GO_REF:0000024 GO_REF:0000107 MGI:5424277 NCBI chr10:16,340,428...16,347,004
Ensembl chr10:16,344,159...16,346,934
JBrowse link
G Nkx3-2 NK3 homeobox 2 acts_upstream_of_or_within ISO MGI:1857926|MGI:1931319|MGI:3848005 (MGI:1343724|PMID:10449756), (MGI:1347483|PMID:10572046), (MGI:3056270|PMID:15329346), (MGI:3846278|PMID:19208343) RGD PMID:10449756 PMID:10572046 PMID:15329346 PMID:19208343 MGI:1343724 MGI:1347483 MGI:3056270 MGI:3846278 NCBI chr14:69,183,795...69,186,182
Ensembl chr14:69,183,820...69,186,061
JBrowse link
G Nr1h3 nuclear receptor subfamily 1, group H, member 3 IEP RGD PMID:17341476 RGD:401827282 NCBI chr 3:77,158,808...77,168,907
Ensembl chr 3:77,158,808...77,168,722
JBrowse link
G Onecut1 one cut homeobox 1 acts_upstream_of_or_within
involved_in
ISO
IEA
MGI:2179340 (MGI:3707632|PMID:12874218)
GO_REF:0000107
RGD
Ensembl
PMID:12874218 GO_REF:0000107 MGI:3707632 NCBI chr 8:75,599,432...75,633,598
Ensembl chr 8:75,599,740...75,627,277
JBrowse link
G Pbx1 PBX homeobox 1 acts_upstream_of_or_within ISO MGI:104737|MGI:2155612|MGI:97350|MGI:98769 (MGI:3581070|PMID:15944191), (MGI:5424277|PMID:22560297) RGD PMID:15944191 PMID:22560297 MGI:3581070 MGI:5424277 NCBI chr13:80,278,766...80,588,563
Ensembl chr13:80,278,770...80,588,594
JBrowse link
G Pcid2 PCI domain containing 2 involved_in ISO (MGI:4839685|PMID:20870947) RGD PMID:20870947 MGI:4839685 NCBI chr16:76,423,245...76,448,712
Ensembl chr16:76,423,245...76,448,712
JBrowse link
G Pitx2 paired-like homeodomain 2 involved_in ISO (MGI:3054669|PMID:15475956) RGD PMID:15475956 MGI:3054669 NCBI chr 2:217,717,738...217,737,293
Ensembl chr 2:217,717,693...217,737,293
JBrowse link
G Pkn1 protein kinase N1 acts_upstream_of_or_within
involved_in
ISO
IEA
MGI:5475202 (MGI:5467878|PMID:23223530)
GO_REF:0000107
RGD
Ensembl
PMID:23223530 GO_REF:0000107 MGI:5467878 NCBI chr19:24,442,130...24,470,107
Ensembl chr19:24,442,122...24,470,107
JBrowse link
G Polb DNA polymerase beta acts_upstream_of_or_within ISO MGI:5427084 (MGI:5553198|PMID:24388753) RGD PMID:24388753 MGI:5553198 NCBI chr16:69,379,438...69,402,710
Ensembl chr16:69,379,400...69,404,812
JBrowse link
G Ppp2r3c protein phosphatase 2, regulatory subunit B'', gamma acts_upstream_of_or_within
involved_in
ISO
IEA
MGI:3759678 (MGI:3589325|PMID:16129705)
GO_REF:0000107
RGD
Ensembl
PMID:16129705 GO_REF:0000107 MGI:3589325 NCBI chr 6:72,647,025...72,670,885
Ensembl chr 6:72,647,025...72,672,491
JBrowse link
G Prkdc protein kinase, DNA-activated, catalytic subunit IMP RGD PMID:22981234 RGD:8696027 NCBI chr11:85,040,790...85,258,357
Ensembl chr11:85,040,792...85,257,952
JBrowse link
G Psmb9 proteasome 20S subunit beta 9 IEP RGD PMID:24707720 RGD:9854625 NCBI chr20:4,667,044...4,672,512
Ensembl chr20:4,666,046...4,672,512
JBrowse link
G Rbm15 RNA binding motif protein 15 acts_upstream_of_or_within ISO MGI:2656539|MGI:3706994 (MGI:3833189|PMID:18981216) RGD PMID:18981216 MGI:3833189 NCBI chr 2:194,945,974...194,954,498
Ensembl chr 2:194,945,974...194,954,703
JBrowse link
G Rc3h1 ring finger and CCCH-type domains 1 acts_upstream_of_or_within ISO MGI:2442789 (MGI:5486592|PMID:23583643) RGD PMID:23583643 MGI:5486592 NCBI chr13:73,174,075...73,245,762
Ensembl chr13:73,173,946...73,238,839
JBrowse link
G Rc3h2 ring finger and CCCH-type domains 2 acts_upstream_of_or_within ISO MGI:2685397 (MGI:5486592|PMID:23583643) RGD PMID:23583643 MGI:5486592 NCBI chr 3:21,121,531...21,186,711
Ensembl chr 3:21,110,679...21,179,933
JBrowse link
G Ripk3 receptor-interacting serine-threonine kinase 3 involved_in ISS
ISO
GO_REF:0000024
UniProtKB:Q61160 (MGI:5291865|PMID:21876153)
UniProt
RGD
PMID:21876153 GO_REF:0000024 MGI:5291865 NCBI chr15:29,283,153...29,292,107
Ensembl chr15:29,283,145...29,292,121
JBrowse link
G Samd9l1 sterile alpha motif domain containing 9 like 1 acts_upstream_of_or_within ISO (MGI:5520108|PMID:24029230) RGD PMID:24029230 MGI:5520108 NCBI chr 4:31,362,054...31,376,412
Ensembl chr 4:31,361,669...31,376,415
JBrowse link
G Slc40a1 solute carrier family 40 member 1 acts_upstream_of_or_within ISO MGI:1889622 (MGI:3578034|PMID:15342464) RGD PMID:15342464 MGI:3578034 NCBI chr 9:48,033,526...48,053,876
Ensembl chr 9:48,033,526...48,051,481
JBrowse link
G Tcf21 transcription factor 21 involved_in ISS
ISO
GO_REF:0000024
(MGI:1888654|PMID:10944221)
UniProt
RGD
PMID:10944221 GO_REF:0000024 MGI:1888654 NCBI chr 1:22,701,353...22,704,212
Ensembl chr 1:22,701,353...22,704,202
JBrowse link
G Tet2 tet methylcytosine dioxygenase 2 acts_upstream_of_or_within ISO MGI:5301343 (MGI:5298314|PMID:21803851) RGD PMID:21803851 MGI:5298314 NCBI chr 2:221,988,645...222,072,813
Ensembl chr 2:221,988,645...222,072,534
JBrowse link
G Tlx1 T-cell leukemia, homeobox 1 acts_upstream_of_or_within ISO MGI:3581680|MGI:97495 (MGI:3581070|PMID:15944191), (MGI:3621683|PMID:11356032) RGD PMID:11356032 PMID:15944191 MGI:3581070 MGI:3621683 NCBI chr 1:244,005,057...244,011,318
Ensembl chr 1:244,005,057...244,011,318
JBrowse link
G Traf3ip2 Traf3 interacting protein 2 involved_in ISO MGI:3510784 (MGI:5438168|PMID:22585710) RGD PMID:22585710 MGI:5438168 NCBI chr20:43,011,405...43,054,654
Ensembl chr20:43,011,450...43,054,667
JBrowse link
spleen trabecula formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Slc40a1 solute carrier family 40 member 1 acts_upstream_of_or_within ISO MGI:1889622 (MGI:3578034|PMID:15342464) RGD PMID:15342464 MGI:3578034 NCBI chr 9:48,033,526...48,053,876
Ensembl chr 9:48,033,526...48,051,481
JBrowse link
thymus development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abl1 ABL proto-oncogene 1, non-receptor tyrosine kinase acts_upstream_of_or_within ISO MGI:2153718 (MGI:2153797|PMID:2065352) RGD PMID:2065352 MGI:2153797 NCBI chr 3:14,979,853...15,083,065
Ensembl chr 3:14,979,853...15,083,065
JBrowse link
G Adrm1 ADRM1 26S proteasome ubiquitin receptor involved_in ISO (MGI:4849324|PMID:21048919) RGD PMID:21048919 MGI:4849324 NCBI chr 3:167,265,435...167,270,197
Ensembl chr 3:167,265,296...167,270,195
JBrowse link
G Apc APC regulator of WNT signaling pathway acts_upstream_of_or_within ISO MGI:3589207|MGI:3688435 (MGI:3588595|PMID:16025118), (MGI:3688426|PMID:17002498) RGD PMID:16025118 PMID:17002498 MGI:3588595 MGI:3688426 NCBI chr18:25,828,558...25,925,511
Ensembl chr18:25,864,222...25,922,696
JBrowse link
G Asxl1 ASXL transcriptional regulator 1 acts_upstream_of_or_within ISO MGI:4418244 (MGI:4418016|PMID:19861679) RGD PMID:19861679 MGI:4418016 NCBI chr 3:141,814,012...141,881,526
Ensembl chr 3:141,813,433...141,881,538
JBrowse link
G Atm ATM serine/threonine kinase acts_upstream_of_or_within ISO MGI:1926343 (MGI:83357|PMID:8843194) RGD PMID:8843194 MGI:83357 NCBI chr 8:53,828,741...53,932,773
Ensembl chr 8:53,831,093...53,932,437
JBrowse link
G Bcl11b BCL11 transcription factor B acts_upstream_of_or_within ISO MGI:2663971 (MGI:2662810|PMID:12717433) RGD PMID:12717433 MGI:2662810 NCBI chr 6:126,834,531...126,927,720
Ensembl chr 6:126,834,531...126,928,224
JBrowse link
G Bcl2 BCL2, apoptosis regulator acts_upstream_of_or_within
involved_in
ISO
IEA
MGI:1197519|MGI:1857134|MGI:2156165 (MGI:3767491|PMID:15818405), (MGI:894988|PMID:9241272)
GO_REF:0000107
RGD
Ensembl
PMID:9241272 PMID:15818405 GO_REF:0000107 MGI:3767491 MGI:894988 NCBI chr13:22,689,783...22,853,920
Ensembl chr13:22,684,989...22,853,743
Ensembl chr13:22,684,989...22,853,743
JBrowse link
G Bcl2l11 Bcl2-like 11 acts_upstream_of_or_within ISO MGI:88138 (MGI:3767491|PMID:15818405) RGD PMID:15818405 MGI:3767491 NCBI chr 3:115,366,783...115,404,068
Ensembl chr 3:115,366,646...115,404,068
JBrowse link
G Braf B-Raf proto-oncogene, serine/threonine kinase acts_upstream_of_or_within ISO MGI:97847 (MGI:3832113|PMID:18952847) RGD PMID:18952847 MGI:3832113 NCBI chr 4:68,375,484...68,510,652
Ensembl chr 4:68,384,649...68,510,463
JBrowse link
G Cacnb4 calcium voltage-gated channel auxiliary subunit beta 4 acts_upstream_of_or_within ISO MGI:1856936 (MGI:53759|PMID:5037658) RGD PMID:5037658 MGI:53759 NCBI chr 3:36,906,771...37,169,165
Ensembl chr 3:36,910,427...37,168,944
JBrowse link
G Carmil2 capping protein regulator and myosin 1 linker 2 acts_upstream_of_or_within ISO MGI:5547539 (MGI:5544872|PMID:23793062) RGD PMID:23793062 MGI:5544872 NCBI chr19:33,571,255...33,586,783
Ensembl chr19:33,574,257...33,586,965
JBrowse link
G Ccnb2 cyclin B2 acts_upstream_of_or_within ISO MGI:2429974 (MGI:1203433|PMID:9539739) RGD PMID:9539739 MGI:1203433 NCBI chr 8:71,087,594...71,100,794
Ensembl chr 8:71,087,595...71,100,874
JBrowse link
G Cited2 Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 acts_upstream_of_or_within ISO MGI:109360|MGI:2179740 (MGI:4457799|PMID:20549734) RGD PMID:20549734 MGI:4457799 NCBI chr 1:12,312,426...12,314,869
Ensembl chr 1:12,312,160...12,314,897
JBrowse link
G Crkl CRK like proto-oncogene, adaptor protein acts_upstream_of_or_within ISO MGI:98493 (MGI:3614586|PMID:16399080) RGD PMID:16399080 MGI:3614586 NCBI chr11:83,528,788...83,563,214
Ensembl chr11:83,526,530...83,563,238
JBrowse link
G Ctc1 CST telomere replication complex component 1 acts_upstream_of_or_within ISO MGI:5427642 (MGI:5426340|PMID:22531781) RGD PMID:22531781 MGI:5426340 NCBI chr10:53,714,614...53,735,298
Ensembl chr10:53,714,644...53,735,298
JBrowse link
G Ctnnb1 catenin beta 1 acts_upstream_of_or_within
involved_in
ISO
IEA
MGI:1858008 (MGI:3588595|PMID:16025118)
GO_REF:0000107
RGD
Ensembl
PMID:16025118 GO_REF:0000107 MGI:3588595 NCBI chr 8:120,640,008...120,667,110
Ensembl chr 8:120,639,995...120,667,111
JBrowse link
G Ephb3 Eph receptor B3 involved_in ISO (MGI:4366231|PMID:19598115) RGD PMID:19598115 MGI:4366231 NCBI chr11:79,840,668...79,859,345
Ensembl chr11:79,840,668...79,859,370
JBrowse link
G Fadd Fas associated via death domain involved_in ISS
ISO
GO_REF:0000024
UniProtKB:Q9QZL0 (MGI:5291865|PMID:21876153)
UniProt
RGD
PMID:21876153 GO_REF:0000024 MGI:5291865 NCBI chr 1:199,743,200...199,745,746
Ensembl chr 1:199,739,994...199,745,653
JBrowse link
G Fgf10 fibroblast growth factor 10 involved_in ISO (PMID:17969154) RGD PMID:17969154 NCBI chr 2:50,801,171...50,878,218
Ensembl chr 2:50,800,992...50,876,866
JBrowse link
G Fgf3 fibroblast growth factor 3 acts_upstream_of_or_within ISO MGI:3027990 (MGI:3690261|PMID:17000704) RGD PMID:17000704 MGI:3690261 NCBI chr 1:200,001,162...200,005,539
Ensembl chr 1:200,001,261...200,005,187
JBrowse link
G Foxe1 forkhead box E1 involved_in ISO (PMID:15494458) RGD PMID:15494458 NCBI chr 5:60,630,027...60,632,835
Ensembl chr 5:60,630,027...60,632,835
JBrowse link
G Foxi3 forkhead box I3 involved_in ISO (MGI:6360100|PMID:31412026) RGD PMID:31412026 MGI:6360100 NCBI chr 4:102,933,487...102,937,655
Ensembl chr 4:102,933,409...102,937,655
JBrowse link
G Foxn1 forkhead box N1 acts_upstream_of_or_within IMP
ISO
MGI:5297717 (MGI:5296987|PMID:22072979) RGD PMID:22072979 PMID:8790387 MGI:5296987, RGD:1300512 NCBI chr10:63,251,400...63,273,710
Ensembl chr10:63,251,400...63,273,710
JBrowse link
G Gata3 GATA binding protein 3 acts_upstream_of_or_within ISO MGI:2683927 (MGI:3813999|PMID:17082577) RGD PMID:17082577 MGI:3813999 NCBI chr17:68,643,760...68,666,000
Ensembl chr17:68,643,873...68,665,391
JBrowse link
G Hand2 heart and neural crest derivatives expressed 2 involved_in IEA
ISO
GO_REF:0000107
(MGI:4413411|PMID:19008477)
Ensembl
RGD
PMID:19008477 GO_REF:0000107 MGI:4413411 NCBI chr16:32,917,448...32,920,791
Ensembl chr16:32,917,823...32,919,891
JBrowse link
G Hes1 hes family bHLH transcription factor 1 involved_in IEA
ISO
GO_REF:0000107
(MGI:4453944|PMID:20122914)
Ensembl
RGD
PMID:20122914 GO_REF:0000107 MGI:4453944 NCBI chr11:70,705,763...70,708,176
Ensembl chr11:70,705,764...70,708,192
JBrowse link
G Hnrnpk heterogeneous nuclear ribonucleoprotein K IEP RGD PMID:16488668 RGD:10002779 NCBI chr17:6,262,936...6,275,001
Ensembl chr17:6,262,998...6,274,997
JBrowse link
G Hoxa3 homeobox A3 acts_upstream_of_or_within ISO MGI:1857992|MGI:96184|MGI:96207|MGI:97485 (MGI:1201272|PMID:9520319), (MGI:2149273|PMID:11476574), (MGI:74186|PMID:7635047) RGD PMID:7635047 PMID:9520319 PMID:11476574 MGI:1201272 MGI:2149273 MGI:74186 NCBI chr 4:81,269,243...81,313,218
Ensembl chr 4:81,269,243...81,313,218
JBrowse link
G Ikzf1 IKAROS family zinc finger 1 acts_upstream_of_or_within ISO MGI:2158738 (MGI:68746|PMID:7923373) RGD PMID:7923373 MGI:68746 NCBI chr14:86,255,065...86,340,839
Ensembl chr14:86,255,065...86,342,416
JBrowse link
G Jarid2 jumonji and AT-rich interaction domain containing 2 acts_upstream_of_or_within ISO MGI:1856923 (MGI:1096257|PMID:9376320) RGD PMID:9376320 MGI:1096257 NCBI chr17:19,777,487...19,957,696
Ensembl chr17:19,777,266...19,955,690
JBrowse link
G Lmo4 LIM domain only 4 acts_upstream_of_or_within ISO MGI:1306784 (MGI:4457799|PMID:20549734) RGD PMID:20549734 MGI:4457799 NCBI chr 2:233,264,180...233,280,881
Ensembl chr 2:233,264,182...233,280,880
JBrowse link
G Mad1l1 mitotic arrest deficient 1 like 1 acts_upstream_of_or_within ISO (MGI:1932181|PMID:11313860) RGD PMID:11313860 MGI:1932181 NCBI chr12:14,320,892...14,630,750
Ensembl chr12:14,320,892...14,630,703
JBrowse link
G Mafb MAF bZIP transcription factor B acts_upstream_of_or_within ISO MGI:3663168 (MGI:3839521|PMID:19164599) RGD PMID:19164599 MGI:3839521 NCBI chr 3:148,998,111...149,000,031
Ensembl chr 3:148,998,122...149,000,031
JBrowse link
G Map2k1 mitogen activated protein kinase kinase 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1346867 (MGI:3832113|PMID:18952847)
Ensembl
RGD
PMID:18952847 GO_REF:0000107 MGI:3832113 NCBI chr 8:64,683,449...64,754,900
Ensembl chr 8:64,683,449...64,755,147
JBrowse link
G Map2k2 mitogen activated protein kinase kinase 2 acts_upstream_of_or_within
involved_in
ISO
IEA
MGI:1346866 (MGI:3832113|PMID:18952847)
GO_REF:0000107
RGD
Ensembl
PMID:18952847 GO_REF:0000107 MGI:3832113 NCBI chr 7:8,590,729...8,610,279
Ensembl chr 7:8,580,905...8,610,243
JBrowse link
G Mapk1 mitogen activated protein kinase 1 acts_upstream_of_or_within
involved_in
ISO
IEA
MGI:1346859 (MGI:3832113|PMID:18952847)
GO_REF:0000107
RGD
Ensembl
PMID:18952847 GO_REF:0000107 MGI:3832113 NCBI chr11:83,957,813...84,023,629
Ensembl chr11:83,957,813...84,023,616
JBrowse link
G Mapk3 mitogen activated protein kinase 3 acts_upstream_of_or_within ISO MGI:1346858 (MGI:3832113|PMID:18952847) RGD PMID:18952847 MGI:3832113 NCBI chr 1:181,366,646...181,372,863
Ensembl chr 1:181,366,637...181,372,863
JBrowse link
G Myb MYB proto-oncogene, transcription factor acts_upstream_of_or_within ISO MGI:3047076 (MGI:3763573|PMID:17927961) RGD PMID:17927961 MGI:3763573 NCBI chr 1:15,939,771...15,973,367
Ensembl chr 1:15,939,761...15,973,057
JBrowse link
G Nfatc3 nuclear factor of activated T-cells 3 acts_upstream_of_or_within ISO MGI:2182778 (MGI:1289938|PMID:9768749) RGD PMID:9768749 MGI:1289938 NCBI chr19:33,960,643...34,035,150
Ensembl chr19:33,960,852...34,035,150
JBrowse link
G Nr1h3 nuclear receptor subfamily 1, group H, member 3 IEP RGD PMID:17341476 RGD:401827282 NCBI chr 3:77,158,808...77,168,907
Ensembl chr 3:77,158,808...77,168,722
JBrowse link
G Pax1 paired box 1 acts_upstream_of_or_within ISO MGI:96175 (MGI:2149273|PMID:11476574) RGD PMID:11476574 MGI:2149273 NCBI chr 3:134,792,330...134,801,637
Ensembl chr 3:134,789,182...134,801,636
JBrowse link
G Pbx1 PBX homeobox 1 acts_upstream_of_or_within ISO MGI:2155612 (MGI:3522524|PMID:15581866) RGD PMID:15581866 MGI:3522524 NCBI chr13:80,278,766...80,588,563
Ensembl chr13:80,278,770...80,588,594
JBrowse link
G Prdx2 peroxiredoxin 2 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:2668456 (MGI:3050700|PMID:15259009)
Ensembl
RGD
PMID:15259009 GO_REF:0000107 MGI:3050700 NCBI chr19:23,180,927...23,186,217
Ensembl chr19:23,180,930...23,186,194
JBrowse link
G Prkdc protein kinase, DNA-activated, catalytic subunit IMP RGD PMID:22981234 RGD:8696027 NCBI chr11:85,040,790...85,258,357
Ensembl chr11:85,040,792...85,257,952
JBrowse link
G Psen1 presenilin 1 acts_upstream_of_or_within ISO MGI:109284|MGI:1930934 (MGI:3760494|PMID:17698590) RGD PMID:17698590 MGI:3760494 NCBI chr 6:103,323,052...103,375,088
Ensembl chr 6:103,323,120...103,371,650
JBrowse link
G Psen2 presenilin 2 acts_upstream_of_or_within ISO MGI:1202717 (MGI:3760494|PMID:17698590) RGD PMID:17698590 MGI:3760494 NCBI chr13:91,967,506...91,993,240
Ensembl chr13:91,967,983...91,993,174
JBrowse link
G Psmb9 proteasome 20S subunit beta 9 IEP RGD PMID:18457575 RGD:9850287 NCBI chr20:4,667,044...4,672,512
Ensembl chr20:4,666,046...4,672,512
JBrowse link
G Raf1 Raf-1 proto-oncogene, serine/threonine kinase acts_upstream_of_or_within
involved_in
ISO
IEA
MGI:88190 (MGI:3832113|PMID:18952847)
GO_REF:0000107
RGD
Ensembl
PMID:18952847 GO_REF:0000107 MGI:3832113 NCBI chr 4:148,679,534...148,740,265
Ensembl chr 4:148,679,530...148,740,317
JBrowse link
G Rag1 recombination activating 1 acts_upstream_of_or_within ISO MGI:1353616 (MGI:3811961|PMID:18684012) RGD PMID:18684012 MGI:3811961 NCBI chr 3:87,917,061...87,928,158
Ensembl chr 3:87,917,004...87,928,291
JBrowse link
G Ripk3 receptor-interacting serine-threonine kinase 3 involved_in ISS
ISO
GO_REF:0000024
UniProtKB:Q61160 (MGI:5291865|PMID:21876153)
UniProt
RGD
PMID:21876153 GO_REF:0000024 MGI:5291865 NCBI chr15:29,283,153...29,292,107
Ensembl chr15:29,283,145...29,292,121
JBrowse link
G Shh sonic hedgehog signaling molecule involved_in ISS
ISO
IEA
GO_REF:0000024
(MGI:3836494|PMID:19109233)
GO_REF:0000107
UniProt
RGD
Ensembl
PMID:19109233 GO_REF:0000024 GO_REF:0000107 MGI:3836494 NCBI chr 4:6,954,017...6,963,170
Ensembl chr 4:6,954,017...6,963,170
JBrowse link
G Six1 SIX homeobox 1 acts_upstream_of_or_within ISO MGI:106034|MGI:2655195 (MGI:3624596|PMID:16530750) RGD PMID:16530750 MGI:3624596 NCBI chr 6:91,746,739...91,751,975
Ensembl chr 6:91,746,739...91,751,975
JBrowse link
G Six4 SIX homeobox 4 acts_upstream_of_or_within ISO MGI:102780 (MGI:3624596|PMID:16530750) RGD PMID:16530750 MGI:3624596 NCBI chr 6:91,802,328...91,816,002
Ensembl chr 6:91,802,329...91,815,992
JBrowse link
G Slc46a2 solute carrier family 46, member 2 acts_upstream_of_or_within ISO MGI:97848 (MGI:3811961|PMID:18684012) RGD PMID:18684012 MGI:3811961 NCBI chr 5:74,800,226...74,808,128
Ensembl chr 5:74,800,226...74,808,128
JBrowse link
G Srf serum response factor acts_upstream_of_or_within ISO MGI:3522206 (MGI:3832113|PMID:18952847) RGD PMID:18952847 MGI:3832113 NCBI chr 9:14,426,453...14,435,734
Ensembl chr 9:14,426,472...14,435,733
JBrowse link
G Tbx1 T-box transcription factor 1 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
(MGI:6360100|PMID:31412026)
(PMID:14585638)
MGI:3664784 (MGI:3770747|PMID:17916582)
UniProt
RGD
PMID:14585638 PMID:17916582 PMID:31412026 GO_REF:0000024 MGI:3770747 MGI:6360100 NCBI chr11:82,409,275...82,419,058
Ensembl chr11:82,409,275...82,418,380
JBrowse link
G Tgfbr1 transforming growth factor, beta receptor 1 acts_upstream_of_or_within
involved_in
ISO
IEA
MGI:2386570|MGI:2388050 (MGI:3703113|PMID:17078885)
GO_REF:0000107
RGD
Ensembl
PMID:17078885 GO_REF:0000107 MGI:3703113 NCBI chr 5:61,653,773...61,710,777
Ensembl chr 5:61,653,233...61,710,777
JBrowse link
G Tyr tyrosinase acts_upstream_of_or_within ISO MGI:1856308 (MGI:1861540|PMID:10890980) RGD PMID:10890980 MGI:1861540 NCBI chr 1:141,115,036...141,210,207
Ensembl chr 1:141,115,036...141,210,207
JBrowse link
G Zbtb1 zinc finger and BTB domain containing 1 involved_in ISO (MGI:5300225|PMID:22201126) RGD PMID:22201126 MGI:5300225 NCBI chr 6:95,096,838...95,125,811
Ensembl chr 6:95,096,387...95,118,996
JBrowse link
G Zmpste24 zinc metallopeptidase STE24 acts_upstream_of_or_within ISO MGI:2180033 (MGI:2178865|PMID:11923874) RGD PMID:11923874 MGI:2178865 NCBI chr 5:134,627,218...134,660,360
Ensembl chr 5:134,627,229...134,660,110
JBrowse link
thymus epithelium morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aire autoimmune regulator involved_in ISO
IBA
(MGI:3818193|PMID:19015306)
GO_REF:0000033
RGD
GO_Central
PMID:19015306 GO_REF:0000033 MGI:3818193 NCBI chr20:10,636,058...10,651,060
Ensembl chr20:10,636,123...10,651,060
JBrowse link
G Foxn1 forkhead box N1 involved_in ISO (MGI:5437206|PMID:21109991) RGD PMID:21109991 MGI:5437206 NCBI chr10:63,251,400...63,273,710
Ensembl chr10:63,251,400...63,273,710
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20350
    immune system process 2980
      immune system development 235
        hematopoietic or lymphoid organ development 127
          bone marrow development 10
          bursa of Fabricius development 0
          head kidney development + 0
          lymph gland development + 0
          lymph node development 24
          mucosa-associated lymphoid tissue development + 14
          spleen development + 50
          thymus development + 61
Path 2
Term Annotations click to browse term
  biological_process 20350
    developmental process 7023
      anatomical structure development 6530
        multicellular organism development 5248
          system development 4527
            immune system development 235
              hematopoietic or lymphoid organ development 127
                bone marrow development 10
                bursa of Fabricius development 0
                head kidney development + 0
                lymph gland development + 0
                lymph node development 24
                mucosa-associated lymphoid tissue development + 14
                spleen development + 50
                thymus development + 61
paths to the root