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ONTOLOGY REPORT - ANNOTATIONS

Term:anatomical structure arrangement
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Accession:GO:0048532 term browser browse the term
Definition:The process that gives rise to the configuration of the constituent parts of an anatomical structure. This process pertains to the physical shaping of a rudimentary structure. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome.
Synonyms:exact_synonym: anatomical structure structural organization;   organization of an anatomical structure;   structural organization
 broad_synonym: anatomical structure organization

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anatomical structure arrangement term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rac1 Rac family small GTPase 1 acts_upstream_of_or_within ISO (PMID:20016102) MGI PMID:20016102 NCBI chrNW_004955460:13,270,159...13,295,562
Ensembl chrNW_004955460:13,270,159...13,311,351 		JBrowse link
cerebellar cortex structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Usp9x ubiquitin specific peptidase 9 X-linked acts_upstream_of_or_within ISO (PMID:23861879) MGI PMID:23861879 NCBI chrNW_004955565:1,479,040...1,602,070
Ensembl chrNW_004955565:1,479,040...1,602,070 		JBrowse link
cerebellar granular layer structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kif14 kinesin family member 14 involved_in ISO (MGI:5485315|PMID:23308235) UniProt PMID:23308235 MGI:5485315 NCBI chrNW_004955406:36,732,135...36,791,756
Ensembl chrNW_004955406:36,737,484...36,791,756 		JBrowse link
cerebellar Purkinje cell layer structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dll1 delta like canonical Notch ligand 1 involved_in ISO (MGI:5504540|PMID:23688253) UniProt PMID:23688253 MGI:5504540 NCBI chrNW_004955411:3,478,943...3,486,541
Ensembl chrNW_004955411:3,478,033...3,486,604 		JBrowse link
G Kif14 kinesin family member 14 involved_in ISO (MGI:5485315|PMID:23308235) UniProt PMID:23308235 MGI:5485315 NCBI chrNW_004955406:36,732,135...36,791,756
Ensembl chrNW_004955406:36,737,484...36,791,756 		JBrowse link
cerebellum structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dab1 DAB adaptor protein 1 acts_upstream_of_or_within ISO (PMID:9338785) MGI PMID:9338785 NCBI chrNW_004955464:2,325,529...2,721,497
Ensembl chrNW_004955464:2,455,346...2,724,358 		JBrowse link
G Hspa5 heat shock protein family A (Hsp70) member 5 involved_in ISO (MGI:4437543|PMID:19816510) BHF-UCL PMID:19816510 MGI:4437543 NCBI chrNW_004955419:3,055,420...3,060,208
Ensembl chrNW_004955419:3,055,420...3,062,131 		JBrowse link
facial nerve structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Egr2 early growth response 2 involved_in
acts_upstream_of_or_within		 ISO (MGI:1331140|PMID:10068633), (MGI:69122|PMID:7935840)
(PMID:9806922)		 UniProt
MGI		 PMID:7935840 PMID:9806922 PMID:10068633 MGI:1331140 MGI:69122 NCBI chrNW_004955425:16,055,748...16,068,429
Ensembl chrNW_004955425:16,055,748...16,060,048 		JBrowse link
G Hoxa1 homeobox A1 acts_upstream_of_or_within ISO (PMID:9806922) MGI PMID:9806922 NCBI chrNW_004955410:28,788,245...28,790,971
Ensembl chrNW_004955410:28,787,817...28,790,962 		JBrowse link
G Hoxb1 homeobox B1 acts_upstream_of_or_within ISO (PMID:8898234) MGI PMID:8898234 NCBI chrNW_004955451:12,707,560...12,708,950
Ensembl chrNW_004955451:12,707,462...12,709,899 		JBrowse link
G Hoxb2 homeobox B2 acts_upstream_of_or_within ISO (PMID:9012503) MGI PMID:9012503 NCBI chrNW_004955451:12,693,764...12,697,825
Ensembl chrNW_004955451:12,694,868...12,697,846 		JBrowse link
G Nrp1 neuropilin 1 involved_in ISO (MGI:3788968|PMID:18356247), (MGI:3822054|PMID:18804103) ParkinsonsUK-UCL PMID:18356247 PMID:18804103 MGI:3788968 MGI:3822054 NCBI chrNW_004955462:4,101,997...4,241,012
Ensembl chrNW_004955462:4,101,999...4,241,012 		JBrowse link
G Nrp2 neuropilin 2 involved_in ISO (MGI:3788968|PMID:18356247) ParkinsonsUK-UCL PMID:18356247 MGI:3788968 NCBI chrNW_004955457:9,197,621...9,316,789
Ensembl chrNW_004955457:9,197,405...9,316,787 		JBrowse link
G Plxna3 plexin A3 involved_in ISO (MGI:3822054|PMID:18804103) ParkinsonsUK-UCL PMID:18804103 MGI:3822054 NCBI chrNW_004955580:958,033...972,123
Ensembl chrNW_004955580:957,860...972,772 		JBrowse link
G Plxna4 plexin A4 involved_in ISO (MGI:3822054|PMID:18804103) ParkinsonsUK-UCL PMID:18804103 MGI:3822054 NCBI chrNW_004955410:35,281,042...35,714,094
Ensembl chrNW_004955410:35,281,648...35,713,453 		JBrowse link
G Sema3a semaphorin 3A involved_in ISO (MGI:3822054|PMID:18804103) ParkinsonsUK-UCL PMID:18804103 MGI:3822054 NCBI chrNW_004955410:2,146,088...2,344,342
Ensembl chrNW_004955410:2,144,388...2,338,973 		JBrowse link
G Sema3f semaphorin 3F involved_in ISO (MGI:3822054|PMID:18804103) ParkinsonsUK-UCL PMID:18804103 MGI:3822054 NCBI chrNW_004955532:1,992,417...2,015,879
Ensembl chrNW_004955532:1,988,486...2,017,170 		JBrowse link
olfactory nerve structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dmd dystrophin acts_upstream_of_or_within ISO (PMID:18586242) MGI PMID:18586242 NCBI chrNW_004955535:1,283,084...3,297,015
Ensembl chrNW_004955535:1,283,523...3,299,542 		JBrowse link
optic cup structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tfap2a transcription factor AP-2 alpha involved_in ISO (MGI:4439459|PMID:20150232) UniProt PMID:20150232 MGI:4439459 NCBI chrNW_004955465:3,877,896...3,900,259
Ensembl chrNW_004955465:3,882,549...3,898,929 		JBrowse link
optic nerve structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kcna2 potassium voltage-gated channel subfamily A member 2 acts_upstream_of_or_within ISO (PMID:15102918) MGI PMID:15102918 NCBI chrNW_004955435:14,074,346...14,080,026
Ensembl chrNW_004955435:14,074,346...14,078,806 		JBrowse link
G Pax2 paired box 2 involved_in ISO (MGI:84247|PMID:8951055) DFLAT PMID:8951055 MGI:84247 NCBI chrNW_004955485:9,351,913...9,430,607
Ensembl chrNW_004955485:9,350,087...9,430,607 		JBrowse link
paraxial mesoderm structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISO (PMID:16943278) MGI PMID:16943278 NCBI chrNW_004955510:5,812,571...5,936,312
Ensembl chrNW_004955510:5,905,008...5,936,312 		JBrowse link
rhombomere 3 structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Egr2 early growth response 2 involved_in ISO (MGI:52248|PMID:8093858) UniProt PMID:8093858 MGI:52248 NCBI chrNW_004955425:16,055,748...16,068,429
Ensembl chrNW_004955425:16,055,748...16,060,048 		JBrowse link
rhombomere 5 structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Egr2 early growth response 2 involved_in ISO (MGI:6393337|PMID:11823429)
(MGI:52248|PMID:8093858)		 UniProt PMID:8093858 PMID:11823429 MGI:52248 MGI:6393337 NCBI chrNW_004955425:16,055,748...16,068,429
Ensembl chrNW_004955425:16,055,748...16,060,048 		JBrowse link
trigeminal nerve structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nrp1 neuropilin 1 involved_in ISO (MGI:3822054|PMID:18804103) ParkinsonsUK-UCL PMID:18804103 MGI:3822054 NCBI chrNW_004955462:4,101,997...4,241,012
Ensembl chrNW_004955462:4,101,999...4,241,012 		JBrowse link
G Plxna3 plexin A3 involved_in ISO (MGI:3822054|PMID:18804103) ParkinsonsUK-UCL PMID:18804103 MGI:3822054 NCBI chrNW_004955580:958,033...972,123
Ensembl chrNW_004955580:957,860...972,772 		JBrowse link
G Plxna4 plexin A4 involved_in ISO (MGI:3822054|PMID:18804103) ParkinsonsUK-UCL PMID:18804103 MGI:3822054 NCBI chrNW_004955410:35,281,042...35,714,094
Ensembl chrNW_004955410:35,281,648...35,713,453 		JBrowse link
G Sema3a semaphorin 3A involved_in ISO (MGI:3822054|PMID:18804103) ParkinsonsUK-UCL PMID:18804103 MGI:3822054 NCBI chrNW_004955410:2,146,088...2,344,342
Ensembl chrNW_004955410:2,144,388...2,338,973 		JBrowse link
G Sema3f semaphorin 3F involved_in ISO (MGI:3822054|PMID:18804103) ParkinsonsUK-UCL PMID:18804103 MGI:3822054 NCBI chrNW_004955532:1,992,417...2,015,879
Ensembl chrNW_004955532:1,988,486...2,017,170 		JBrowse link
vestibulocochlear nerve structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nrp1 neuropilin 1 involved_in ISO (MGI:3788968|PMID:18356247) ParkinsonsUK-UCL PMID:18356247 MGI:3788968 NCBI chrNW_004955462:4,101,997...4,241,012
Ensembl chrNW_004955462:4,101,999...4,241,012 		JBrowse link
G Nrp2 neuropilin 2 involved_in ISO (MGI:3788968|PMID:18356247) ParkinsonsUK-UCL PMID:18356247 MGI:3788968 NCBI chrNW_004955457:9,197,621...9,316,789
Ensembl chrNW_004955457:9,197,405...9,316,787 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12346
    developmental process 5853
      anatomical structure arrangement 21
        central nervous system structural organization 0
        cerebellar Purkinje cell layer structural organization 2
        cerebellar cortex structural organization + 3
        cerebellar granular layer structural organization 1
        cerebellar molecular layer structural organization 0
        cerebellum structural organization 2
        cranial nerve structural organization + 13
        dorsal motor nucleus of vagus nerve structural organization 0
        floral organ structural organization + 0
        floral whorl structural organization 0
        flower structural organization + 0
        ganglion structural organization + 0
        hindbrain structural organization + 2
        inferior olivary nucleus structural organization 0
        leaf shaping 0
        medulla oblongata structural organization + 0
        meristem structural organization + 0
        mesoderm structural organization + 1
        midbrain-hindbrain boundary structural organization 0
        optic cup structural organization 1
        outer ear unfolding 0
        pons structural organization + 0
        pronephros structural organization + 0
        quiescent center organization 0
        rhombomere structural organization + 1
        superior olivary nucleus structural organization 0
Path 2
Term Annotations click to browse term
  biological_process 12346
    developmental process 5853
      anatomical structure development 5540
        anatomical structure morphogenesis 2558
          anatomical structure arrangement 21
            central nervous system structural organization 0
            cerebellar Purkinje cell layer structural organization 2
            cerebellar cortex structural organization + 3
            cerebellar granular layer structural organization 1
            cerebellar molecular layer structural organization 0
            cerebellum structural organization 2
            cranial nerve structural organization + 13
            dorsal motor nucleus of vagus nerve structural organization 0
            floral organ structural organization + 0
            floral whorl structural organization 0
            flower structural organization + 0
            ganglion structural organization + 0
            hindbrain structural organization + 2
            inferior olivary nucleus structural organization 0
            leaf shaping 0
            medulla oblongata structural organization + 0
            meristem structural organization + 0
            mesoderm structural organization + 1
            midbrain-hindbrain boundary structural organization 0
            optic cup structural organization 1
            outer ear unfolding 0
            pons structural organization + 0
            pronephros structural organization + 0
            quiescent center organization 0
            rhombomere structural organization + 1
            superior olivary nucleus structural organization 0
paths to the root