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ONTOLOGY REPORT - ANNOTATIONS

Term:anatomical structure arrangement
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Accession:GO:0048532 term browser browse the term
Definition:The process that gives rise to the configuration of the constituent parts of an anatomical structure. This process pertains to the physical shaping of a rudimentary structure. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome.
Synonyms:exact_synonym: anatomical structure structural organization;   organization of an anatomical structure;   structural organization
 broad_synonym: anatomical structure organization


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anatomical structure arrangement term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RAC1 Rac family small GTPase 1 acts_upstream_of_or_within ISO (PMID:20016102) MGI PMID:20016102 NCBI chr 7:7,039,379...7,068,866 JBrowse link
cerebellar cortex structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G USP9X ubiquitin specific peptidase 9 X-linked acts_upstream_of_or_within ISO (PMID:23861879) MGI PMID:23861879 NCBI chr  X:33,535,543...33,683,220
Ensembl chr  X:41,232,041...41,379,910 		JBrowse link
cerebellar granular layer structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G KIF14 kinesin family member 14 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:176,156,870...176,223,093
Ensembl chr 1:180,462,578...180,526,323 		JBrowse link
cerebellar Purkinje cell layer structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DLL1 delta like canonical Notch ligand 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 6:168,440,192...168,449,071
Ensembl chr 6:173,534,292...173,544,759 		JBrowse link
G KIF14 kinesin family member 14 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:176,156,870...176,223,093
Ensembl chr 1:180,462,578...180,526,323 		JBrowse link
cerebellum structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DAB1 DAB adaptor protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9338785) Ensembl
MGI		 PMID:9338785 GO_REF:0000107 NCBI chr 1:56,279,089...57,529,881
Ensembl chr 1:58,005,136...58,286,708 		JBrowse link
G HSPA5 heat shock protein family A (Hsp70) member 5 involved_in ISO (MGI:4437543|PMID:19816510) BHF-UCL PMID:19816510 MGI:4437543 NCBI chr 9:96,351,645...96,356,761
Ensembl chr 9:124,865,211...124,870,458 		JBrowse link
facial nerve structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EGR2 early growth response 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9806922) Ensembl
MGI		 PMID:9806922 GO_REF:0000107 NCBI chr10:59,320,073...59,326,869
Ensembl chr10:61,648,364...61,652,846 		JBrowse link
G HOXA1 homeobox A1 acts_upstream_of_or_within ISO (PMID:9806922) MGI PMID:9806922 NCBI chr 7:27,737,432...27,740,442
Ensembl chr 7:27,335,710...27,339,747 		JBrowse link
G HOXB1 homeobox B1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:8898234) Ensembl
MGI		 PMID:8898234 GO_REF:0000107 NCBI chr17:9,005,745...9,008,230
Ensembl chr17:9,190,137...9,191,696 		JBrowse link
G HOXB2 homeobox B2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:9012503) Ensembl
MGI		 PMID:9012503 GO_REF:0000107 NCBI chr17:8,991,652...8,994,092
Ensembl chr17:9,176,313...9,178,713 		JBrowse link
G NRP1 neuropilin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:33,298,918...33,456,466
Ensembl chr10:33,883,173...34,039,648 		JBrowse link
G NRP2 neuropilin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:92,911,721...93,027,032
Ensembl chr2B:211,042,324...211,157,547 		JBrowse link
G PLXNA3 plexin A3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:143,900,029...143,915,391
Ensembl chr  X:153,772,700...153,786,167 		JBrowse link
G PLXNA4 plexin A4 involved_in ISO (MGI:3822054|PMID:18804103) ParkinsonsUK-UCL PMID:18804103 MGI:3822054 NCBI chr 7:124,097,028...124,621,504
Ensembl chr 7:136,643,657...136,992,405 		JBrowse link
G SEMA3A semaphorin 3A involved_in ISO (MGI:3822054|PMID:18804103) ParkinsonsUK-UCL PMID:18804103 MGI:3822054 NCBI chr 7:75,929,699...76,484,246
Ensembl chr 7:89,590,359...90,004,122 		JBrowse link
G SEMA3F semaphorin 3F involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:50,083,733...50,117,518
Ensembl chr 3:51,318,089...51,351,958 		JBrowse link
olfactory nerve structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G DMD dystrophin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:18586242) Ensembl
MGI		 PMID:18586242 GO_REF:0000107 NCBI chr  X:23,728,650...26,338,849
Ensembl chr  X:31,282,415...33,492,733 		JBrowse link
optic cup structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G TFAP2A transcription factor AP-2 alpha involved_in ISO (MGI:4439459|PMID:20150232) UniProt PMID:20150232 MGI:4439459 NCBI chr 6:10,237,834...10,260,843 JBrowse link
optic nerve structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G KCNA2 potassium voltage-gated channel subfamily A member 2 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15102918) Ensembl
MGI		 PMID:15102918 GO_REF:0000107 NCBI chr 1:113,187,158...113,256,260
Ensembl chr 1:127,090,829...127,092,328 		JBrowse link
G PAX2 paired box 2 involved_in ISO (MGI:84247|PMID:8951055) DFLAT PMID:8951055 MGI:84247 NCBI chr10:97,344,978...97,429,086
Ensembl chr10:100,822,676...100,904,028 		JBrowse link
paraxial mesoderm structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G BMPR1A bone morphogenetic protein receptor type 1A involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16943278) Ensembl
MGI		 PMID:16943278 GO_REF:0000107 NCBI chr10:83,185,040...83,353,239
Ensembl chr10:86,837,469...86,912,912 		JBrowse link
rhombomere 3 structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EGR2 early growth response 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:59,320,073...59,326,869
Ensembl chr10:61,648,364...61,652,846 		JBrowse link
rhombomere 5 structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G EGR2 early growth response 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:59,320,073...59,326,869
Ensembl chr10:61,648,364...61,652,846 		JBrowse link
trigeminal nerve structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NRP1 neuropilin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:33,298,918...33,456,466
Ensembl chr10:33,883,173...34,039,648 		JBrowse link
G PLXNA3 plexin A3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:143,900,029...143,915,391
Ensembl chr  X:153,772,700...153,786,167 		JBrowse link
G PLXNA4 plexin A4 involved_in ISO (MGI:3822054|PMID:18804103) ParkinsonsUK-UCL PMID:18804103 MGI:3822054 NCBI chr 7:124,097,028...124,621,504
Ensembl chr 7:136,643,657...136,992,405 		JBrowse link
G SEMA3A semaphorin 3A involved_in ISO (MGI:3822054|PMID:18804103) ParkinsonsUK-UCL PMID:18804103 MGI:3822054 NCBI chr 7:75,929,699...76,484,246
Ensembl chr 7:89,590,359...90,004,122 		JBrowse link
G SEMA3F semaphorin 3F involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:50,083,733...50,117,518
Ensembl chr 3:51,318,089...51,351,958 		JBrowse link
vestibulocochlear nerve structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G NRP1 neuropilin 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:33,298,918...33,456,466
Ensembl chr10:33,883,173...34,039,648 		JBrowse link
G NRP2 neuropilin 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr2B:92,911,721...93,027,032
Ensembl chr2B:211,042,324...211,157,547 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16440
    developmental process 6563
      anatomical structure arrangement 21
        central nervous system structural organization 0
        cerebellar Purkinje cell layer structural organization 2
        cerebellar cortex structural organization + 3
        cerebellar granular layer structural organization 1
        cerebellar molecular layer structural organization 0
        cerebellum structural organization 2
        cranial nerve structural organization + 13
        dorsal motor nucleus of vagus nerve structural organization 0
        floral organ structural organization + 0
        floral whorl structural organization 0
        flower structural organization + 0
        ganglion structural organization + 0
        hindbrain structural organization + 2
        inferior olivary nucleus structural organization 0
        leaf shaping 0
        medulla oblongata structural organization + 0
        meristem structural organization + 0
        mesoderm structural organization + 1
        midbrain-hindbrain boundary structural organization 0
        optic cup structural organization 1
        outer ear unfolding 0
        pons structural organization + 0
        pronephros structural organization + 0
        quiescent center organization 0
        rhombomere structural organization + 1
        superior olivary nucleus structural organization 0
Path 2
Term Annotations click to browse term
  biological_process 16440
    developmental process 6563
      anatomical structure development 6172
        anatomical structure morphogenesis 2851
          anatomical structure arrangement 21
            central nervous system structural organization 0
            cerebellar Purkinje cell layer structural organization 2
            cerebellar cortex structural organization + 3
            cerebellar granular layer structural organization 1
            cerebellar molecular layer structural organization 0
            cerebellum structural organization 2
            cranial nerve structural organization + 13
            dorsal motor nucleus of vagus nerve structural organization 0
            floral organ structural organization + 0
            floral whorl structural organization 0
            flower structural organization + 0
            ganglion structural organization + 0
            hindbrain structural organization + 2
            inferior olivary nucleus structural organization 0
            leaf shaping 0
            medulla oblongata structural organization + 0
            meristem structural organization + 0
            mesoderm structural organization + 1
            midbrain-hindbrain boundary structural organization 0
            optic cup structural organization 1
            outer ear unfolding 0
            pons structural organization + 0
            pronephros structural organization + 0
            quiescent center organization 0
            rhombomere structural organization + 1
            superior olivary nucleus structural organization 0
paths to the root