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ONTOLOGY REPORT - ANNOTATIONS


Term:anatomical structure arrangement
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Accession:GO:0048532 term browser browse the term
Definition:The process that gives rise to the configuration of the constituent parts of an anatomical structure. This process pertains to the physical shaping of a rudimentary structure. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome.
Synonyms:exact_synonym: anatomical structure structural organization;   organization of an anatomical structure;   structural organization
 broad_synonym: anatomical structure organization


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anatomical structure arrangement term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rac1 Rac family small GTPase 1 ISO MGI:2663662|MGI:2663669 (MGI:4430014|PMID:20016102) RGD PMID:20016102 MGI:4430014 NCBI chr12:13,090,316...13,111,841
Ensembl chr12:13,090,172...13,111,873
JBrowse link
cerebellar cortex structural organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Usp9x ubiquitin specific peptidase 9, X-linked ISO MGI:5438072 (MGI:5532214|PMID:23861879) RGD PMID:23861879 MGI:5532214 NCBI chr  X:10,510,033...10,660,555
Ensembl chr  X:10,510,033...10,630,297
JBrowse link
cerebellar granular layer structural organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kif14 kinesin family member 14 ISO (MGI:5485315|PMID:23308235) RGD PMID:23308235 MGI:5485315 NCBI chr13:53,350,073...53,421,992
Ensembl chr13:53,351,717...53,420,111
JBrowse link
cerebellar Purkinje cell layer structural organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dll1 delta like canonical Notch ligand 1 IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(MGI:5504540|PMID:23688253)
Ensembl
UniProt
RGD
PMID:23688253 GO_REF:0000024 GO_REF:0000107 MGI:5504540 NCBI chr 1:57,318,621...57,326,732
Ensembl chr 1:57,318,708...57,327,379
JBrowse link
G Kif14 kinesin family member 14 ISO (MGI:5485315|PMID:23308235) RGD PMID:23308235 MGI:5485315 NCBI chr13:53,350,073...53,421,992
Ensembl chr13:53,351,717...53,420,111
JBrowse link
cerebellum structural organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dab1 DAB adaptor protein 1 ISO MGI:1861918 (MGI:1098179|PMID:9338785) RGD PMID:9338785 MGI:1098179 NCBI chr 5:123,154,360...124,279,170
Ensembl chr 5:123,905,166...124,280,115
JBrowse link
G Hspa5 heat shock protein family A (Hsp70) member 5 ISO (MGI:4437543|PMID:19816510) RGD PMID:19816510 MGI:4437543 NCBI chr 3:13,838,304...13,842,763
Ensembl chr 3:13,838,304...13,842,762
JBrowse link
facial nerve structural organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Egr2 early growth response 2 ISS
ISO
GO_REF:0000024
MGI:96170 (MGI:1306866|PMID:9806922), (MGI:1331140|PMID:10068633), (MGI:69122|PMID:7935840)
UniProt
RGD
PMID:7935840 PMID:9806922 PMID:10068633 GO_REF:0000024 MGI:1306866 MGI:1331140 MGI:69122 NCBI chr20:22,452,170...22,461,018
Ensembl chr20:22,454,463...22,459,025
JBrowse link
G Hoxa1 homeobox A1 ISO MGI:95296 (MGI:1306866|PMID:9806922) RGD PMID:9806922 MGI:1306866 NCBI chr 4:82,124,358...82,127,182
Ensembl chr 4:82,125,406...82,127,066
JBrowse link
G Hoxb1 homeo box B1 ISO MGI:1857824 (MGI:83677|PMID:8898234) RGD PMID:8898234 MGI:83677 NCBI chr10:84,214,358...84,215,812
Ensembl chr10:84,214,358...84,215,687
JBrowse link
G Hoxb2 homeobox B2 ISO MGI:2151772 (MGI:85074|PMID:9012503) RGD PMID:9012503 MGI:85074 NCBI chr10:84,200,859...84,203,065
Ensembl chr10:84,200,880...84,202,688
JBrowse link
G Nrp1 neuropilin 1 ISO (MGI:3788968|PMID:18356247), (MGI:3822054|PMID:18804103) RGD PMID:18356247 PMID:18804103 MGI:3788968 MGI:3822054 NCBI chr19:61,332,351...61,486,166
Ensembl chr19:61,332,351...61,485,858
JBrowse link
G Nrp2 neuropilin 2 ISO (MGI:3788968|PMID:18356247) RGD PMID:18356247 MGI:3788968 NCBI chr 9:69,496,875...69,609,802
Ensembl chr 9:69,497,121...69,612,087
JBrowse link
G Plxna3 plexin A3 ISO (MGI:3822054|PMID:18804103) RGD PMID:18804103 MGI:3822054 NCBI chr  X:156,363,400...156,379,433
Ensembl chr  X:156,363,405...156,379,189
JBrowse link
G Plxna4 plexin A4 ISO (MGI:3822054|PMID:18804103) RGD PMID:18804103 MGI:3822054 NCBI chr 4:59,439,489...59,883,637
Ensembl chr 4:59,445,767...59,809,321
JBrowse link
G Sema3a semaphorin 3A ISO (MGI:3822054|PMID:18804103) RGD PMID:18804103 MGI:3822054 NCBI chr 4:18,170,375...18,545,190
Ensembl chr 4:18,178,656...18,396,035
JBrowse link
G Sema3f semaphorin 3F ISO (MGI:3822054|PMID:18804103) RGD PMID:18804103 MGI:3822054 NCBI chr 8:116,439,996...116,469,915
Ensembl chr 8:116,437,696...116,469,915
JBrowse link
olfactory nerve structural organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dmd dystrophin ISO MGI:3531484 (MGI:3805594|PMID:18586242) RGD PMID:18586242 MGI:3805594 NCBI chr  X:51,149,358...53,519,271
Ensembl chr  X:51,286,737...53,519,259
JBrowse link
optic cup structural organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tfap2a transcription factor AP-2 alpha ISS
ISO
GO_REF:0000024
(MGI:4439459|PMID:20150232)
UniProt
RGD
PMID:20150232 GO_REF:0000024 MGI:4439459 NCBI chr17:24,653,342...24,670,457
Ensembl chr17:24,654,902...24,670,457
JBrowse link
optic nerve structural organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kcna2 potassium voltage-gated channel subfamily A member 2 ISO MGI:3043422 (MGI:3042560|PMID:15102918) RGD PMID:15102918 MGI:3042560 NCBI chr 2:209,838,607...209,852,471
Ensembl chr 2:209,838,869...209,852,471
JBrowse link
G Pax2 paired box 2 ISS
ISO
GO_REF:0000024
(MGI:84247|PMID:8951055)
UniProt
RGD
PMID:8951055 GO_REF:0000024 MGI:84247 NCBI chr 1:264,493,579...264,585,073
Ensembl chr 1:264,504,591...264,583,329
JBrowse link
paraxial mesoderm structural organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmpr1a bone morphogenetic protein receptor type 1A ISO MGI:2158343 (MGI:3702797|PMID:16943278) RGD PMID:16943278 MGI:3702797 NCBI chr16:10,758,278...10,852,170
Ensembl chr16:10,758,527...10,802,512
JBrowse link
rhombomere 3 structural organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Egr2 early growth response 2 ISS
ISO
GO_REF:0000024
(MGI:52248|PMID:8093858)
UniProt
RGD
PMID:8093858 GO_REF:0000024 MGI:52248 NCBI chr20:22,452,170...22,461,018
Ensembl chr20:22,454,463...22,459,025
JBrowse link
rhombomere 5 structural organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Egr2 early growth response 2 ISS
ISO
GO_REF:0000024
(MGI:52248|PMID:8093858), (MGI:6393337|PMID:11823429)
UniProt
RGD
PMID:8093858 PMID:11823429 GO_REF:0000024 MGI:52248 MGI:6393337 NCBI chr20:22,452,170...22,461,018
Ensembl chr20:22,454,463...22,459,025
JBrowse link
trigeminal nerve structural organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nrp1 neuropilin 1 ISO (MGI:3822054|PMID:18804103) RGD PMID:18804103 MGI:3822054 NCBI chr19:61,332,351...61,486,166
Ensembl chr19:61,332,351...61,485,858
JBrowse link
G Plxna3 plexin A3 ISO (MGI:3822054|PMID:18804103) RGD PMID:18804103 MGI:3822054 NCBI chr  X:156,363,400...156,379,433
Ensembl chr  X:156,363,405...156,379,189
JBrowse link
G Plxna4 plexin A4 ISO (MGI:3822054|PMID:18804103) RGD PMID:18804103 MGI:3822054 NCBI chr 4:59,439,489...59,883,637
Ensembl chr 4:59,445,767...59,809,321
JBrowse link
G Sema3a semaphorin 3A ISO (MGI:3822054|PMID:18804103) RGD PMID:18804103 MGI:3822054 NCBI chr 4:18,170,375...18,545,190
Ensembl chr 4:18,178,656...18,396,035
JBrowse link
G Sema3f semaphorin 3F ISO (MGI:3822054|PMID:18804103) RGD PMID:18804103 MGI:3822054 NCBI chr 8:116,439,996...116,469,915
Ensembl chr 8:116,437,696...116,469,915
JBrowse link
vestibulocochlear nerve structural organization term browser
Symbol Object Name Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nrp1 neuropilin 1 ISO (MGI:3788968|PMID:18356247) RGD PMID:18356247 MGI:3788968 NCBI chr19:61,332,351...61,486,166
Ensembl chr19:61,332,351...61,485,858
JBrowse link
G Nrp2 neuropilin 2 ISO (MGI:3788968|PMID:18356247) RGD PMID:18356247 MGI:3788968 NCBI chr 9:69,496,875...69,609,802
Ensembl chr 9:69,497,121...69,612,087
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20030
    developmental process 6828
      anatomical structure arrangement 21
        central nervous system structural organization 0
        cerebellar Purkinje cell layer structural organization 2
        cerebellar cortex structural organization + 3
        cerebellar granular layer structural organization 1
        cerebellar molecular layer structural organization 0
        cerebellum structural organization 2
        cranial nerve structural organization + 13
        dorsal motor nucleus of vagus nerve structural organization 0
        floral organ structural organization + 0
        floral whorl structural organization 0
        flower structural organization + 0
        ganglion structural organization + 0
        hindbrain structural organization + 2
        inferior olivary nucleus structural organization 0
        leaf shaping 0
        medulla oblongata structural organization + 0
        meristem structural organization + 0
        mesoderm structural organization + 1
        midbrain-hindbrain boundary structural organization 0
        optic cup structural organization 1
        outer ear unfolding 0
        pons structural organization + 0
        pronephros structural organization + 0
        quiescent center organization 0
        rhombomere structural organization + 1
        superior olivary nucleus structural organization 0
Path 2
Term Annotations click to browse term
  biological_process 20030
    developmental process 6828
      anatomical structure development 6270
        anatomical structure morphogenesis 2879
          anatomical structure arrangement 21
            central nervous system structural organization 0
            cerebellar Purkinje cell layer structural organization 2
            cerebellar cortex structural organization + 3
            cerebellar granular layer structural organization 1
            cerebellar molecular layer structural organization 0
            cerebellum structural organization 2
            cranial nerve structural organization + 13
            dorsal motor nucleus of vagus nerve structural organization 0
            floral organ structural organization + 0
            floral whorl structural organization 0
            flower structural organization + 0
            ganglion structural organization + 0
            hindbrain structural organization + 2
            inferior olivary nucleus structural organization 0
            leaf shaping 0
            medulla oblongata structural organization + 0
            meristem structural organization + 0
            mesoderm structural organization + 1
            midbrain-hindbrain boundary structural organization 0
            optic cup structural organization 1
            outer ear unfolding 0
            pons structural organization + 0
            pronephros structural organization + 0
            quiescent center organization 0
            rhombomere structural organization + 1
            superior olivary nucleus structural organization 0
paths to the root