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ONTOLOGY REPORT - ANNOTATIONS


Term:anatomical structure arrangement
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Accession:GO:0048532 term browser browse the term
Definition:The process that gives rise to the configuration of the constituent parts of an anatomical structure. This process pertains to the physical shaping of a rudimentary structure. Anatomical structures can be macroscopic such as a carpel, or microscopic such as an acrosome.
Synonyms:exact_synonym: anatomical structure structural organization;   organization of an anatomical structure;   structural organization
 broad_synonym: anatomical structure organization



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anatomical structure arrangement term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rac1 Rac family small GTPase 1 acts_upstream_of_or_within ISO MGI:2663662|MGI:2663669 (PMID:20016102) RGD PMID:20016102 NCBI chr12:16,150,411...16,170,864 JBrowse link
cerebellar cortex structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Usp9x ubiquitin specific peptidase 9, X-linked acts_upstream_of_or_within ISO MGI:5438072 (PMID:23861879) RGD PMID:23861879 NCBI chr  X:9,588,825...9,726,993 JBrowse link
cerebellar granular layer structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kif14 kinesin family member 14 involved_in ISO (PMID:23308235) RGD PMID:23308235 NCBI chr13:50,478,646...50,542,256 JBrowse link
cerebellar Purkinje cell layer structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dll1 delta like canonical Notch ligand 1 involved_in IEA
ISS
ISO
GO_REF:0000107
GO_REF:0000024
(PMID:23688253)
Ensembl
UniProt
RGD
PMID:23688253 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:64,985,161...64,993,274 JBrowse link
G Kif14 kinesin family member 14 involved_in ISO (PMID:23308235) RGD PMID:23308235 NCBI chr13:50,478,646...50,542,256 JBrowse link
cerebellum structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dab1 DAB adaptor protein 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1861918 (PMID:9338785)
Ensembl
RGD
PMID:9338785 GO_REF:0000107 NCBI chr 5:118,392,953...119,513,625 JBrowse link
G Hspa5 heat shock protein family A (Hsp70) member 5 involved_in IEA
ISO
GO_REF:0000107
(PMID:19816510)
Ensembl
RGD
PMID:19816510 GO_REF:0000107 NCBI chr 3:38,453,016...38,457,475 JBrowse link
facial nerve structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Egr2 early growth response 2 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
(PMID:10068633), (PMID:7935840)
MGI:96170 (PMID:9806922)
UniProt
RGD
PMID:7935840 PMID:9806922 PMID:10068633 GO_REF:0000024 NCBI chr20:21,051,270...21,056,322 JBrowse link
G Hoxa1 homeobox A1 acts_upstream_of_or_within ISO MGI:95296 (PMID:9806922) RGD PMID:9806922 NCBI chr 4:81,255,814...81,258,587 JBrowse link
G Hoxb1 homeo box B1 acts_upstream_of_or_within ISO MGI:1857824 (PMID:8898234) RGD PMID:8898234 NCBI chr10:81,331,507...81,332,928 JBrowse link
G Hoxb2 homeobox B2 acts_upstream_of_or_within ISO MGI:2151772 (PMID:9012503) RGD PMID:9012503 NCBI chr10:81,317,828...81,320,220 JBrowse link
G Nrp1 neuropilin 1 involved_in ISO (PMID:18356247), (PMID:18804103) RGD PMID:18356247 PMID:18804103 NCBI chr19:73,256,557...73,411,705 JBrowse link
G Nrp2 neuropilin 2 involved_in IEA
ISO
GO_REF:0000107
(PMID:18356247)
Ensembl
RGD
PMID:18356247 GO_REF:0000107 NCBI chr 9:71,616,602...71,731,869 JBrowse link
G Plxna3 plexin A3 involved_in ISO (PMID:18804103) RGD PMID:18804103 NCBI chr  X:152,115,699...152,131,608 JBrowse link
G Plxna4 plexin A4 involved_in ISO (PMID:18804103) RGD PMID:18804103 NCBI chr 4:60,720,246...61,162,206 JBrowse link
G Sema3a semaphorin 3A involved_in ISO (PMID:18804103) RGD PMID:18804103 NCBI chr 4:21,282,398...21,754,834 JBrowse link
G Sema3f semaphorin 3F involved_in ISO (PMID:18804103) RGD PMID:18804103 NCBI chr 8:117,236,269...117,265,206 JBrowse link
olfactory nerve structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dmd dystrophin acts_upstream_of_or_within ISO MGI:3531484 (PMID:18586242) RGD PMID:18586242 NCBI chr  X:51,070,098...53,437,845 JBrowse link
optic cup structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tfap2a transcription factor AP-2 alpha involved_in ISS
ISO
GO_REF:0000024
(PMID:20150232)
UniProt
RGD
PMID:20150232 GO_REF:0000024 NCBI chr17:24,230,064...24,253,219 JBrowse link
optic nerve structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kcna2 potassium voltage-gated channel subfamily A member 2 acts_upstream_of_or_within ISO MGI:3043422 (PMID:15102918) RGD PMID:15102918 NCBI chr 2:194,704,555...194,718,387 JBrowse link
G Pax2 paired box 2 involved_in ISS
ISO
GO_REF:0000024
(PMID:8951055)
UniProt
RGD
PMID:8951055 GO_REF:0000024 NCBI chr 1:243,616,509...243,697,454 JBrowse link
paraxial mesoderm structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISO MGI:2158343 (PMID:16943278) RGD PMID:16943278 NCBI chr16:9,740,751...9,786,861 JBrowse link
rhombomere 3 structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Egr2 early growth response 2 involved_in ISS
ISO
GO_REF:0000024
(PMID:8093858)
UniProt
RGD
PMID:8093858 GO_REF:0000024 NCBI chr20:21,051,270...21,056,322 JBrowse link
rhombomere 5 structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Egr2 early growth response 2 involved_in ISS
ISO
GO_REF:0000024
(PMID:11823429), (PMID:8093858)
UniProt
RGD
PMID:8093858 PMID:11823429 GO_REF:0000024 NCBI chr20:21,051,270...21,056,322 JBrowse link
trigeminal nerve structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nrp1 neuropilin 1 involved_in ISO (PMID:18804103) RGD PMID:18804103 NCBI chr19:73,256,557...73,411,705 JBrowse link
G Plxna3 plexin A3 involved_in ISO (PMID:18804103) RGD PMID:18804103 NCBI chr  X:152,115,699...152,131,608 JBrowse link
G Plxna4 plexin A4 involved_in ISO (PMID:18804103) RGD PMID:18804103 NCBI chr 4:60,720,246...61,162,206 JBrowse link
G Sema3a semaphorin 3A involved_in ISO (PMID:18804103) RGD PMID:18804103 NCBI chr 4:21,282,398...21,754,834 JBrowse link
G Sema3f semaphorin 3F involved_in ISO (PMID:18804103) RGD PMID:18804103 NCBI chr 8:117,236,269...117,265,206 JBrowse link
vestibulocochlear nerve structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nrp1 neuropilin 1 involved_in ISO (PMID:18356247) RGD PMID:18356247 NCBI chr19:73,256,557...73,411,705 JBrowse link
G Nrp2 neuropilin 2 involved_in IEA
ISO
GO_REF:0000107
(PMID:18356247)
Ensembl
RGD
PMID:18356247 GO_REF:0000107 NCBI chr 9:71,616,602...71,731,869 JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20534
    developmental process 7107
      anatomical structure arrangement 21
        central nervous system structural organization 0
        cerebellar Purkinje cell layer structural organization 2
        cerebellar cortex structural organization + 3
        cerebellar granular layer structural organization 1
        cerebellar molecular layer structural organization 0
        cerebellum structural organization 2
        cranial nerve structural organization + 13
        dorsal motor nucleus of vagus nerve structural organization 0
        floral organ structural organization + 0
        floral whorl structural organization 0
        flower structural organization + 0
        ganglion structural organization + 0
        hindbrain structural organization + 2
        inferior olivary nucleus structural organization 0
        leaf shaping 0
        medulla oblongata structural organization + 0
        meristem structural organization + 0
        mesoderm structural organization + 1
        midbrain-hindbrain boundary structural organization 0
        optic cup structural organization 1
        outer ear unfolding 0
        pons structural organization + 0
        pronephros structural organization + 0
        quiescent center organization 0
        rhombomere structural organization + 1
        superior olivary nucleus structural organization 0
Path 2
Term Annotations click to browse term
  biological_process 20534
    developmental process 7107
      anatomical structure development 6609
        anatomical structure morphogenesis 3006
          anatomical structure arrangement 21
            central nervous system structural organization 0
            cerebellar Purkinje cell layer structural organization 2
            cerebellar cortex structural organization + 3
            cerebellar granular layer structural organization 1
            cerebellar molecular layer structural organization 0
            cerebellum structural organization 2
            cranial nerve structural organization + 13
            dorsal motor nucleus of vagus nerve structural organization 0
            floral organ structural organization + 0
            floral whorl structural organization 0
            flower structural organization + 0
            ganglion structural organization + 0
            hindbrain structural organization + 2
            inferior olivary nucleus structural organization 0
            leaf shaping 0
            medulla oblongata structural organization + 0
            meristem structural organization + 0
            mesoderm structural organization + 1
            midbrain-hindbrain boundary structural organization 0
            optic cup structural organization 1
            outer ear unfolding 0
            pons structural organization + 0
            pronephros structural organization + 0
            quiescent center organization 0
            rhombomere structural organization + 1
            superior olivary nucleus structural organization 0
paths to the root