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ONTOLOGY REPORT - ANNOTATIONS

Term:paraxial mesoderm development
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Accession:GO:0048339 term browser browse the term
Definition:The process whose specific outcome is the progression of the paraxial mesoderm over time, from its formation to the mature structure. The paraxial mesoderm is the mesoderm located bilaterally adjacent to the notochord and neural tube.


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paraxial mesoderm development term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISO MGI:2158343|MGI:95522 (MGI:3702797|PMID:16943278) RGD PMID:16943278 MGI:3702797 NCBI chr16:9,736,390...9,829,825
Ensembl chr16:9,736,630...9,780,616 		JBrowse link
G Dll3 delta like canonical Notch ligand 3 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:1857008 (MGI:3620337|PMID:15170697)		 Ensembl
RGD		 PMID:15170697 GO_REF:0000107 MGI:3620337 NCBI chr 1:83,562,011...83,570,008
Ensembl chr 1:83,562,014...83,569,750 		JBrowse link
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 acts_upstream_of_or_within ISO MGI:3578147 (MGI:3577662|PMID:15755804) RGD PMID:15755804 MGI:3577662 NCBI chr13:30,670,792...30,770,213
Ensembl chr13:30,669,764...30,768,360 		JBrowse link
G Fgfr1 Fibroblast growth factor receptor 1 acts_upstream_of_or_within ISO MGI:1338938 (MGI:3702797|PMID:16943278) RGD PMID:16943278 MGI:3702797 NCBI chr16:66,491,930...66,547,161
Ensembl chr16:66,494,042...66,547,350 		JBrowse link
G Nckap1 NCK-associated protein 1 acts_upstream_of_or_within ISO MGI:3578145 (MGI:3701029|PMID:16831833) RGD PMID:16831833 MGI:3701029 NCBI chr 3:65,417,450...65,491,769
Ensembl chr 3:65,417,453...65,492,217 		JBrowse link
G Nup133 nucleoporin 133 acts_upstream_of_or_within ISO MGI:3578539 (MGI:3577662|PMID:15755804) RGD PMID:15755804 MGI:3577662 NCBI chr19:51,891,606...51,941,243
Ensembl chr19:51,891,629...51,941,239 		JBrowse link
G Poglut1 protein O-glucosyltransferase 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:2137554 (MGI:1267118|PMID:9636176), (MGI:3577662|PMID:15755804)		 Ensembl
RGD		 PMID:9636176 PMID:15755804 GO_REF:0000107 MGI:1267118 MGI:3577662 NCBI chr11:62,198,600...62,226,446
Ensembl chr11:62,198,513...62,226,434 		JBrowse link
G Tcf15 transcription factor 15 acts_upstream_of_or_within ISO MGI:1929775 (MGI:84545|PMID:8955271) RGD PMID:8955271 MGI:84545 NCBI chr 3:140,638,984...140,644,766
Ensembl chr 3:140,638,984...140,644,766 		JBrowse link
G Tead1 TEA domain transcription factor 1 acts_upstream_of_or_within ISO MGI:103262|MGI:104904 (MGI:3773640|PMID:18332127) RGD PMID:18332127 MGI:3773640 NCBI chr 1:166,791,900...167,010,591
Ensembl chr 1:166,792,628...167,003,369 		JBrowse link
G Tead2 TEA domain transcription factor 2 acts_upstream_of_or_within ISO MGI:101876|MGI:103262 (MGI:3773640|PMID:18332127) RGD PMID:18332127 MGI:3773640 NCBI chr 1:95,702,366...95,719,186
Ensembl chr 1:95,703,005...95,719,186 		JBrowse link
G Yap1 Yes1 associated transcriptional regulator acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:101876|MGI:104904 (MGI:3773640|PMID:18332127)
GO_REF:0000107		 RGD
Ensembl		 PMID:18332127 GO_REF:0000107 MGI:3773640 NCBI chr 8:5,095,705...5,166,808
Ensembl chr 8:5,095,722...5,167,010 		JBrowse link
G Zic2 Zic family member 2 involved_in ISO MGI:106676 (MGI:3714675|PMID:17490632) RGD PMID:17490632 MGI:3714675 NCBI chr15:99,576,697...99,581,522
Ensembl chr15:99,576,697...99,581,522 		JBrowse link
G Zic3 Zic family member 3 involved_in ISO MGI:106679 (MGI:3714675|PMID:17490632) RGD PMID:17490632 MGI:3714675 NCBI chr  X:136,123,662...136,129,627
Ensembl chr  X:136,124,026...136,134,746 		JBrowse link
paraxial mesoderm formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Exoc4 exocyst complex component 4 involved_in
acts_upstream_of_or_within		 IEA
ISO		 GO_REF:0000107
MGI:4975171 (MGI:1195048|PMID:9441674)		 Ensembl
RGD		 PMID:9441674 GO_REF:0000107 MGI:1195048 NCBI chr 4:61,807,706...62,584,316
Ensembl chr 4:61,807,761...62,585,723 		JBrowse link
G Foxc1 forkhead box C1 involved_in
acts_upstream_of_or_within		 ISO (MGI:3047050|PMID:15196959)
MGI:1347481 (MGI:2150572|PMID:11562355)		 RGD PMID:11562355 PMID:15196959 MGI:2150572 MGI:3047050 NCBI chr17:32,631,379...32,635,361
Ensembl chr17:32,633,142...32,634,803 		JBrowse link
G Foxc2 forkhead box C2 acts_upstream_of_or_within ISO MGI:1347466 (MGI:2150572|PMID:11562355) RGD PMID:11562355 MGI:2150572 NCBI chr19:49,186,034...49,188,736
Ensembl chr19:49,185,662...49,188,737 		JBrowse link
G Hnf1a HNF1 homeobox A acts_upstream_of_or_within ISO MGI:96770 (MGI:1334099|PMID:10090727) RGD PMID:10090727 MGI:1334099 NCBI chr12:41,638,536...41,672,806
Ensembl chr12:41,645,587...41,672,104 		JBrowse link
G Htt huntingtin acts_upstream_of_or_within ISO MGI:1857180 (MGI:3609520|PMID:16109169) RGD PMID:16109169 MGI:3609520 NCBI chr14:75,845,836...75,996,094
Ensembl chr14:75,845,836...75,995,070 		JBrowse link
G Lef1 lymphoid enhancer binding factor 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:98504 (MGI:1334099|PMID:10090727)
GO_REF:0000107		 RGD
Ensembl		 PMID:10090727 GO_REF:0000107 MGI:1334099 NCBI chr 2:219,666,549...219,779,815
Ensembl chr 2:219,666,592...219,779,794 		JBrowse link
G Wnt11 Wnt family member 11 acts_upstream_of_or_within ISO MGI:98958 (MGI:5634837|PMID:25813538) RGD PMID:25813538 MGI:5634837 NCBI chr 1:153,134,503...153,154,294
Ensembl chr 1:153,138,197...153,154,294 		JBrowse link
G Wnt5a Wnt family member 5A acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:101948 (MGI:5634837|PMID:25813538)
GO_REF:0000107		 RGD
Ensembl		 PMID:25813538 GO_REF:0000107 MGI:5634837 NCBI chr16:3,697,032...3,718,230
Ensembl chr16:3,697,032...3,718,234 		JBrowse link
paraxial mesoderm morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nckap1 NCK-associated protein 1 acts_upstream_of_or_within ISO MGI:3578145 (MGI:3701029|PMID:16831833) RGD PMID:16831833 MGI:3701029 NCBI chr 3:65,417,450...65,491,769
Ensembl chr 3:65,417,453...65,492,217 		JBrowse link
G Smad2 SMAD family member 2 involved_in
acts_upstream_of_or_within		 ISS
ISO		 GO_REF:0000024
MGI:1857691 (MGI:3039049|PMID:15084457)		 UniProt
RGD		 PMID:15084457 GO_REF:0000024 MGI:3039049 NCBI chr18:69,849,884...69,918,926
Ensembl chr18:69,850,377...69,912,323 		JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of_or_within ISO MGI:1857696 (MGI:3039049|PMID:15084457) RGD PMID:15084457 MGI:3039049 NCBI chr 8:64,126,829...64,236,960
Ensembl chr 8:64,110,039...64,236,960 		JBrowse link
paraxial mesoderm structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISO MGI:2158343 (MGI:3702797|PMID:16943278) RGD PMID:16943278 MGI:3702797 NCBI chr16:9,736,390...9,829,825
Ensembl chr16:9,736,630...9,780,616 		JBrowse link
paraxial mesodermal cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxc2 forkhead box C2 acts_upstream_of_or_within ISO MGI:1857865 (MGI:86990|PMID:9106663) RGD PMID:9106663 MGI:86990 NCBI chr19:49,186,034...49,188,736
Ensembl chr19:49,185,662...49,188,737 		JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within ISO MGI:1857489 (MGI:86727|PMID:9126297) RGD PMID:9126297 MGI:86727 NCBI chr10:44,034,174...44,078,366
Ensembl chr10:44,034,194...44,078,324 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19574
    developmental process 6911
      anatomical structure development 6438
        tissue development 2277
          mesoderm development 133
            paraxial mesoderm development 24
              paraxial mesoderm morphogenesis + 13
paths to the root