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ONTOLOGY REPORT - ANNOTATIONS


Term:mesoderm morphogenesis
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Accession:GO:0048332 term browser browse the term
Definition:The process in which the anatomical structures of the mesoderm are generated and organized.



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mesoderm morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Setd2 SET domain containing 2, histone lysine methyltransferase acts_upstream_of_or_within ISO (MGI:4431136|PMID:20133625) RGD PMID:20133625 MGI:4431136 NCBI chr 8:110,511,808...110,597,489
Ensembl chr 8:110,511,772...110,597,489
JBrowse link
G Tbx3 T-box transcription factor 3 involved_in ISS
ISO
GO_REF:0000024
(PMID:9207801)
UniProt
RGD
PMID:9207801 GO_REF:0000024 NCBI chr12:36,879,924...36,894,849
Ensembl chr12:36,881,445...36,893,708
JBrowse link
axial mesoderm formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Axin1 axin 1 acts_upstream_of_or_within ISO MGI:1857546 (MGI:894149|PMID:9230313) RGD PMID:9230313 MGI:894149 NCBI chr10:15,163,684...15,215,615
Ensembl chr10:15,163,684...15,215,615
JBrowse link
G Epha2 Eph receptor A2 acts_upstream_of_or_within ISO MGI:2448472 (MGI:1934524|PMID:11287184) RGD PMID:11287184 MGI:1934524 NCBI chr 5:153,605,644...153,634,115
Ensembl chr 5:153,605,644...153,634,117
JBrowse link
axial mesoderm morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 acts_upstream_of_or_within ISO MGI:3578147 (MGI:3714667|PMID:17507402) RGD PMID:17507402 MGI:3714667 NCBI chr13:30,673,052...30,770,213
Ensembl chr13:30,669,764...30,768,360
JBrowse link
G Tcf7l1 transcription factor 7 like 1 acts_upstream_of_or_within ISO MGI:3044616 (MGI:3043490|PMID:14668413) RGD PMID:14668413 MGI:3043490 NCBI chr 4:104,680,734...104,846,086
Ensembl chr 4:104,680,739...104,845,287
JBrowse link
axial mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO (MGI:2677178|PMID:14511481) RGD PMID:14511481 MGI:2677178 NCBI chr20:29,368,436...29,376,837
Ensembl chr20:29,368,436...29,376,837
JBrowse link
BMP signaling pathway involved in mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Etv2 ETS variant transcription factor 2 acts_upstream_of_or_within ISO (MGI:4415813|PMID:18462699) RGD PMID:18462699 MGI:4415813 NCBI chr 1:85,890,562...85,894,025
Ensembl chr 1:85,890,559...85,893,431
JBrowse link
hemangioblast cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tal1 TAL bHLH transcription factor 1, erythroid differentiation factor acts_upstream_of_or_within ISO MGI:1857254 (MGI:3580923|PMID:15677567), (MGI:3807430|PMID:18550854), (MGI:3838687|PMID:19182774) RGD PMID:15677567 PMID:18550854 PMID:19182774 MGI:3580923 MGI:3807430 MGI:3838687 NCBI chr 5:128,586,776...128,600,976
Ensembl chr 5:128,587,701...128,600,976
JBrowse link
intermediate mesodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 involved_in ISO
ISS
IEA
(PMID:10021330)
GO_REF:0000024
GO_REF:0000107
RGD
UniProt
Ensembl
PMID:10021330 GO_REF:0000024 GO_REF:0000107 NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306
JBrowse link
lateral mesodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxf1 forkhead box F1 acts_upstream_of_or_within ISO MGI:1929432 (MGI:1928688|PMID:11124112) RGD PMID:11124112 MGI:1928688 NCBI chr19:49,153,729...49,157,741
Ensembl chr19:49,153,699...49,157,738
JBrowse link
mesoderm formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acvr1 activin A receptor type 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1931734|MGI:3696672 (MGI:1345529|PMID:10479450), (MGI:3695845|PMID:17117439)
Ensembl
RGD
PMID:10479450 PMID:17117439 GO_REF:0000107 MGI:1345529 MGI:3695845 NCBI chr 3:42,978,558...43,097,892
Ensembl chr 3:42,978,561...43,098,241
JBrowse link
G Armc5 armadillo repeat containing 5 acts_upstream_of_or_within ISO MGI:6157645 (MGI:5913685|PMID:28911199) RGD PMID:28911199 MGI:5913685 NCBI chr 1:182,820,141...182,826,913
Ensembl chr 1:182,820,141...182,826,907
JBrowse link
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO (MGI:4415813|PMID:18462699), (MGI:70235|PMID:7799920) RGD PMID:7799920 PMID:18462699 MGI:4415813 MGI:70235 NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306
JBrowse link
G Bmp7 bone morphogenetic protein 7 acts_upstream_of_or_within ISO MGI:2137520 (MGI:3578079|PMID:15843411) RGD PMID:15843411 MGI:3578079 NCBI chr 3:161,639,915...161,716,938
Ensembl chr 3:161,516,462...161,716,788
JBrowse link
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISO MGI:2158342 (MGI:3722226|PMID:17699604) RGD PMID:17699604 MGI:3722226 NCBI chr16:9,736,390...9,829,825
Ensembl chr16:9,736,630...9,780,616
JBrowse link
G Bmpr2 bone morphogenetic protein receptor type 2 acts_upstream_of_or_within ISO MGI:2158503 (MGI:1855789|PMID:10772805) RGD PMID:10772805 MGI:1855789 NCBI chr 9:61,192,718...61,307,280
Ensembl chr 9:61,190,566...61,301,809
JBrowse link
G Chrd chordin acts_upstream_of_or_within ISO MGI:2157350 (MGI:2662951|PMID:12810603) RGD PMID:12810603 MGI:2662951 NCBI chr11:80,171,994...80,181,166
Ensembl chr11:80,171,994...80,180,673
JBrowse link
G Crb2 crumbs cell polarity complex component 2 involved_in ISS
ISO
GO_REF:0000024
(MGI:5296388|PMID:22072575), (MGI:5823085|PMID:27870829)
CAFA
RGD
PMID:22072575 PMID:27870829 GO_REF:0000024 MGI:5296388 MGI:5823085 NCBI chr 3:21,542,138...21,564,876
Ensembl chr 3:21,542,221...21,563,294
JBrowse link
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 acts_upstream_of_or_within ISO (MGI:4415813|PMID:18462699) RGD PMID:18462699 MGI:4415813 NCBI chr 1:228,381,521...228,385,202
Ensembl chr 1:228,381,521...228,385,202
JBrowse link
G Ecsit ECSIT signaling integrator acts_upstream_of_or_within ISO MGI:2683025 (MGI:2682456|PMID:14633973) RGD PMID:14633973 MGI:2682456 NCBI chr 8:20,605,583...20,618,453
Ensembl chr 8:20,605,583...20,618,390
JBrowse link
G Eomes eomesodermin involved_in
acts_upstream_of_or_within
IBA
ISO
PMID:21873635
MGI:2182814 (MGI:1354065|PMID:10716450)
RGD PMID:10716450 PMID:21873635 MGI:1354065, RGD:13792537 NCBI chr 8:118,181,340...118,189,186
Ensembl chr 8:118,181,777...118,188,316
JBrowse link
G Etv2 ETS variant transcription factor 2 acts_upstream_of_or_within ISO (MGI:4415813|PMID:18462699) RGD PMID:18462699 MGI:4415813 NCBI chr 1:85,890,562...85,894,025
Ensembl chr 1:85,890,559...85,893,431
JBrowse link
G Ext2 exostosin glycosyltransferase 2 acts_upstream_of_or_within ISO MGI:3608690 (MGI:3608483|PMID:16236767) RGD PMID:16236767 MGI:3608483 NCBI chr 3:79,665,415...79,798,077
Ensembl chr 3:79,665,415...79,798,059
JBrowse link
G Gpi glucose-6-phosphate isomerase acts_upstream_of_or_within ISO MGI:2177275 (MGI:84014|PMID:8922529) RGD PMID:8922529 MGI:84014 NCBI chr 1:86,828,211...86,856,077
Ensembl chr 1:86,828,216...86,856,086
JBrowse link
G Hand1 heart and neural crest derivatives expressed 1 acts_upstream_of_or_within ISO MGI:2153824 (MGI:1197801|PMID:9500550) RGD PMID:9500550 MGI:1197801 NCBI chr10:42,006,646...42,009,213
Ensembl chr10:42,006,651...42,009,213
JBrowse link
G Inhba inhibin subunit beta A acts_upstream_of_or_within ISO (MGI:70235|PMID:7799920) RGD PMID:7799920 MGI:70235 NCBI chr17:49,091,635...49,111,573
Ensembl chr17:49,095,920...49,108,982
JBrowse link
G Macf1 microtubule-actin crosslinking factor 1 acts_upstream_of_or_within ISO MGI:3652899 (MGI:3640889|PMID:16815997) RGD PMID:16815997 MGI:3640889 NCBI chr 5:135,623,729...135,949,097
Ensembl chr 5:135,623,742...135,945,905
JBrowse link
G Mesp1 mesoderm posterior bHLH transcription factor 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:133,738,357...133,739,875
Ensembl chr 1:133,738,357...133,739,875
JBrowse link
G Mesp2 mesoderm posterior bHLH transcription factor 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:133,756,601...133,759,207
Ensembl chr 1:133,756,601...133,759,198
JBrowse link
G Msgn1 mesogenin 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 6:33,912,787...33,913,427
Ensembl chr 6:33,912,787...33,913,427
JBrowse link
G Nf2 NF2, moesin-ezrin-radixin like (MERLIN) tumor suppressor involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857941 (MGI:707944|PMID:9171370)
Ensembl
RGD
PMID:9171370 GO_REF:0000107 MGI:707944 NCBI chr14:79,627,399...79,710,709
Ensembl chr14:79,627,399...79,710,667
JBrowse link
G Nodal nodal growth differentiation factor acts_upstream_of_or_within ISO MGI:2158732 (MGI:2155575|PMID:11311163) RGD PMID:11311163 MGI:2155575 NCBI chr20:29,368,436...29,376,837
Ensembl chr20:29,368,436...29,376,837
JBrowse link
G Nog noggin involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
(MGI:4415813|PMID:18462699)
Ensembl
RGD
PMID:18462699 GO_REF:0000107 MGI:4415813 NCBI chr10:74,128,712...74,130,339
Ensembl chr10:74,128,712...74,130,339
JBrowse link
G Nr4a3 nuclear receptor subfamily 4, group A, member 3 acts_upstream_of_or_within ISO MGI:3043761 (MGI:3042044|PMID:13129926) RGD PMID:13129926 MGI:3042044 NCBI chr 5:62,361,588...62,401,489
Ensembl chr 5:62,361,822...62,402,733
JBrowse link
G Pofut2 protein O-fucosyltransferase 2 acts_upstream_of_or_within ISO MGI:3604508|MGI:4127173 (MGI:4838381|PMID:20637190) RGD PMID:20637190 MGI:4838381 NCBI chr20:11,367,073...11,377,788
Ensembl chr20:11,367,096...11,377,743
JBrowse link
G Prkaca protein kinase cAMP-activated catalytic subunit alpha involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:97592 (MGI:2183097|PMID:12004056)
Ensembl
RGD
PMID:12004056 GO_REF:0000107 MGI:2183097 NCBI chr19:24,155,081...24,178,430
Ensembl chr19:24,155,090...24,178,430
JBrowse link
G Prkar1a protein kinase cAMP-dependent type I regulatory subunit alpha acts_upstream_of_or_within ISO MGI:2183602 (MGI:2183097|PMID:12004056) RGD PMID:12004056 MGI:2183097 NCBI chr10:94,621,042...94,639,534
Ensembl chr10:94,620,039...94,639,041
JBrowse link
G Scx scleraxis bHLH transcription factor involved_in ISO (MGI:1343990|PMID:10477299) RGD PMID:10477299 MGI:1343990 NCBI chr 7:108,176,608...108,178,626
Ensembl chr 7:108,176,608...108,178,626
JBrowse link
G Smad2 SMAD family member 2 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
MGI:1857691 (MGI:3039049|PMID:15084457)
UniProt
RGD
PMID:15084457 GO_REF:0000024 MGI:3039049 NCBI chr18:69,849,884...69,918,926
Ensembl chr18:69,850,377...69,912,323
JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of_or_within ISO MGI:1857696 (MGI:3039049|PMID:15084457) RGD PMID:15084457 MGI:3039049 NCBI chr 8:64,126,829...64,236,960
Ensembl chr 8:64,110,039...64,236,960
JBrowse link
G Snai1 snail family transcriptional repressor 1 involved_in ISO (MGI:2153695|PMID:11689706) RGD PMID:11689706 MGI:2153695 NCBI chr 3:156,248,479...156,252,969
Ensembl chr 3:156,248,485...156,252,969
JBrowse link
G Srf serum response factor acts_upstream_of_or_within ISO MGI:2158696 (MGI:1312998|PMID:9799237), (MGI:1927031|PMID:11060034) RGD PMID:9799237 PMID:11060034 MGI:1312998 MGI:1927031 NCBI chr 9:14,426,453...14,435,734
Ensembl chr 9:14,426,472...14,435,733
JBrowse link
G Tbx19 T-box transcription factor 19 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr13:77,450,848...77,484,475
Ensembl chr13:77,450,849...77,504,163
JBrowse link
G Tbx6 T-box transcription factor 6 acts_upstream_of_or_within ISO MGI:2447721|MGI:3578143 (MGI:2447720|PMID:9490412), (MGI:3577662|PMID:15755804) RGD PMID:9490412 PMID:15755804 MGI:2447720 MGI:3577662 NCBI chr 1:181,387,851...181,392,762
Ensembl chr 1:181,388,684...181,392,593
JBrowse link
G Tbxt T-box transcription factor T involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:52,298,099...52,309,813
Ensembl chr 1:52,298,099...52,305,864
JBrowse link
G Tlx2 T-cell leukemia homeobox 2 acts_upstream_of_or_within ISO MGI:1857514 (MGI:1267265|PMID:9550720) RGD PMID:9550720 MGI:1267265 NCBI chr 4:115,573,736...115,576,097
Ensembl chr 4:115,573,799...115,575,642
JBrowse link
G Twsg1 twisted gastrulation BMP signaling modulator 1 acts_upstream_of_or_within ISO MGI:103302 (MGI:3578079|PMID:15843411) RGD PMID:15843411 MGI:3578079 NCBI chr 9:105,533,116...105,567,525
Ensembl chr 9:105,533,136...105,567,479
JBrowse link
G Txnrd1 thioredoxin reductase 1 acts_upstream_of_or_within ISO MGI:3722092 (MGI:3721365|PMID:17697936) RGD PMID:17697936 MGI:3721365 NCBI chr 7:20,830,042...20,914,990
Ensembl chr 7:20,830,045...20,907,863
JBrowse link
G Wls Wnt ligand secretion mediator involved_in ISO (MGI:4397730|PMID:19841259) RGD PMID:19841259 MGI:4397730 NCBI chr 2:248,931,885...249,047,248
Ensembl chr 2:248,931,903...249,048,298
JBrowse link
G Wnt3 Wnt family member 3 acts_upstream_of_or_within ISO MGI:2178826 (MGI:1341483|PMID:10431240) RGD PMID:10431240 MGI:1341483 NCBI chr10:88,680,248...88,724,170
Ensembl chr10:88,680,248...88,724,099
JBrowse link
mesoderm migration involved in gastrulation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Epb41l5 erythrocyte membrane protein band 4.1 like 5 acts_upstream_of_or_within ISO MGI:3822451 (MGI:3821807|PMID:18794329) RGD PMID:18794329 MGI:3821807 NCBI chr13:30,673,052...30,770,213
Ensembl chr13:30,669,764...30,768,360
JBrowse link
G LOC100912649 uncharacterized LOC100912649 involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024
G Tbxt T-box transcription factor T acts_upstream_of_or_within ISO MGI:1857760 (MGI:71468|PMID:7720590) RGD PMID:7720590 MGI:71468 NCBI chr 1:52,298,099...52,309,813
Ensembl chr 1:52,298,099...52,305,864
JBrowse link
mesodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 acts_upstream_of_or_within ISO (MGI:70235|PMID:7799920) RGD PMID:7799920 MGI:70235 NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306
JBrowse link
G Fgfr2 fibroblast growth factor receptor 2 IEP RGD PMID:7803853 RGD:632663 NCBI chr 1:184,745,418...184,850,655
Ensembl chr 1:184,745,420...184,850,626
JBrowse link
G Hmga2 high mobility group AT-hook 2 involved_in ISO
ISS
(PMID:17624332)
GO_REF:0000024
RGD
UniProt
PMID:17624332 GO_REF:0000024 NCBI chr 7:55,877,145...55,998,813
Ensembl chr 7:55,880,112...55,994,784
JBrowse link
G Inhba inhibin subunit beta A acts_upstream_of_or_within ISO (MGI:70235|PMID:7799920) RGD PMID:7799920 MGI:70235 NCBI chr17:49,091,635...49,111,573
Ensembl chr17:49,095,920...49,108,982
JBrowse link
G Itga2 integrin subunit alpha 2 involved_in ISO (PMID:23154389) RGD PMID:23154389 NCBI chr 2:46,520,345...46,621,487
Ensembl chr 2:46,523,948...46,621,481
JBrowse link
G Itga3 integrin subunit alpha 3 involved_in ISO (PMID:23154389) RGD PMID:23154389 NCBI chr10:79,990,160...80,022,206
Ensembl chr10:79,990,161...80,022,118
JBrowse link
G Itga8 integrin subunit alpha 8 involved_in ISO (PMID:23154389) RGD PMID:23154389 NCBI chr17:75,304,004...75,501,510
Ensembl chr17:75,304,008...75,501,510
JBrowse link
G Itgb1 integrin subunit beta 1 involved_in ISO
IEA
(PMID:23154389)
GO_REF:0000107
RGD
Ensembl
PMID:23154389 GO_REF:0000107 NCBI chr19:56,705,123...56,753,199
Ensembl chr19:56,705,171...56,753,195
JBrowse link
G Itgb3 integrin subunit beta 3 involved_in ISO (PMID:23154389) RGD PMID:23154389 NCBI chr10:89,509,917...89,564,679
Ensembl chr10:89,509,989...89,564,679
JBrowse link
G Itgb4 integrin subunit beta 4 involved_in ISO
IEA
(PMID:23154389)
GO_REF:0000107
RGD
Ensembl
PMID:23154389 GO_REF:0000107 NCBI chr10:101,206,657...101,243,012
Ensembl chr10:101,206,665...101,243,012
JBrowse link
G Kdm6a lysine demethylase 6A acts_upstream_of_or_within ISO MGI:5448754|MGI:5448825 (MGI:5448135|PMID:22949634) RGD PMID:22949634 MGI:5448135 NCBI chr  X:4,337,466...4,477,100
Ensembl chr  X:4,337,750...4,477,062
JBrowse link
G Kdm6b lysine demethylase 6B involved_in ISO (MGI:5574281|PMID:23856522) RGD PMID:23856522 MGI:5574281 NCBI chr10:54,120,716...54,142,212
Ensembl chr10:54,121,848...54,130,794
JBrowse link
mesodermal cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nanog Nanog homeobox acts_upstream_of_or_within ISO MGI:109452 (MGI:3654744|PMID:16801560) RGD PMID:16801560 MGI:3654744 NCBI chr 4:155,943,737...155,951,116
Ensembl chr 4:155,943,737...155,951,116
JBrowse link
G Pou5f1 POU class 5 homeobox 1 acts_upstream_of_or_within ISO (MGI:1355046|PMID:10742100) RGD PMID:10742100 MGI:1355046 NCBI chr20:3,223,128...3,227,891
Ensembl chr20:3,223,129...3,227,891
JBrowse link
G Smad1 SMAD family member 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1919200 (MGI:3654744|PMID:16801560)
Ensembl
RGD
PMID:16801560 GO_REF:0000107 MGI:3654744 NCBI chr19:28,513,130...28,573,665
Ensembl chr19:28,513,131...28,573,651
JBrowse link
mesodermal cell fate determination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmp4 bone morphogenetic protein 4 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:1857137 (MGI:76261|PMID:7657163)
Ensembl
RGD
PMID:7657163 GO_REF:0000107 MGI:76261 NCBI chr15:19,618,538...19,633,494
Ensembl chr15:19,618,542...19,623,306
JBrowse link
mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eya1 EYA transcriptional coactivator and phosphatase 1 involved_in ISO (MGI:3768605|PMID:17785448) RGD PMID:17785448 MGI:3768605 NCBI chr 5:4,863,501...5,101,483
Ensembl chr 5:4,955,543...5,101,483
JBrowse link
G Hoxa11 homeobox A11 involved_in ISO (MGI:3768605|PMID:17785448) RGD PMID:17785448 MGI:3768605 NCBI chr 4:81,342,527...81,346,189
Ensembl chr 4:81,342,528...81,346,232
JBrowse link
G Pax2 paired box 2 involved_in ISS
ISO
GO_REF:0000024
(MGI:3768605|PMID:17785448)
UniProt
RGD
PMID:17785448 GO_REF:0000024 MGI:3768605 NCBI chr 1:243,616,509...243,697,454
Ensembl chr 1:243,616,606...243,695,321
JBrowse link
G Six2 SIX homeobox 2 involved_in ISO (MGI:3768605|PMID:17785448) RGD PMID:17785448 MGI:3768605 NCBI chr 6:8,974,859...8,981,345
Ensembl chr 6:8,967,157...8,981,193
JBrowse link
negative regulation of mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dkk1 dickkopf WNT signaling pathway inhibitor 1 involved_in ISO (PMID:20559569) RGD PMID:20559569 NCBI chr 1:228,381,521...228,385,202
Ensembl chr 1:228,381,521...228,385,202
JBrowse link
G Mesp1 mesoderm posterior bHLH transcription factor 1 involved_in ISO (MGI:4441249|PMID:18593560) RGD PMID:18593560 MGI:4441249 NCBI chr 1:133,738,357...133,739,875
Ensembl chr 1:133,738,357...133,739,875
JBrowse link
G Sfrp2 secreted frizzled-related protein 2 acts_upstream_of_or_within ISO MGI:98956 (MGI:3711603|PMID:17462603) RGD PMID:17462603 MGI:3711603 NCBI chr 2:169,089,517...169,097,064
Ensembl chr 2:169,089,517...169,097,063
JBrowse link
paraxial mesoderm formation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Exoc4 exocyst complex component 4 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:4975171 (MGI:1195048|PMID:9441674)
Ensembl
RGD
PMID:9441674 GO_REF:0000107 MGI:1195048 NCBI chr 4:61,807,706...62,584,316
Ensembl chr 4:61,807,761...62,585,723
JBrowse link
G Foxc1 forkhead box C1 involved_in
acts_upstream_of_or_within
ISO (MGI:3047050|PMID:15196959)
MGI:1347481 (MGI:2150572|PMID:11562355)
RGD PMID:11562355 PMID:15196959 MGI:2150572 MGI:3047050 NCBI chr17:32,631,379...32,635,361
Ensembl chr17:32,633,142...32,634,803
JBrowse link
G Foxc2 forkhead box C2 acts_upstream_of_or_within ISO MGI:1347466 (MGI:2150572|PMID:11562355) RGD PMID:11562355 MGI:2150572 NCBI chr19:49,186,034...49,188,736
Ensembl chr19:49,185,662...49,188,737
JBrowse link
G Hnf1a HNF1 homeobox A acts_upstream_of_or_within ISO MGI:96770 (MGI:1334099|PMID:10090727) RGD PMID:10090727 MGI:1334099 NCBI chr12:41,638,536...41,672,806
Ensembl chr12:41,645,587...41,672,104
JBrowse link
G Htt huntingtin acts_upstream_of_or_within ISO MGI:1857180 (MGI:3609520|PMID:16109169) RGD PMID:16109169 MGI:3609520 NCBI chr14:75,845,836...75,996,094
Ensembl chr14:75,845,836...75,995,070
JBrowse link
G Lef1 lymphoid enhancer binding factor 1 involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:98504 (MGI:1334099|PMID:10090727)
Ensembl
RGD
PMID:10090727 GO_REF:0000107 MGI:1334099 NCBI chr 2:219,666,549...219,779,815
Ensembl chr 2:219,666,592...219,779,794
JBrowse link
G Wnt11 Wnt family member 11 acts_upstream_of_or_within ISO MGI:98958 (MGI:5634837|PMID:25813538) RGD PMID:25813538 MGI:5634837 NCBI chr 1:153,134,503...153,154,294
Ensembl chr 1:153,138,197...153,154,294
JBrowse link
G Wnt5a Wnt family member 5A involved_in
acts_upstream_of_or_within
IEA
ISO
GO_REF:0000107
MGI:101948 (MGI:5634837|PMID:25813538)
Ensembl
RGD
PMID:25813538 GO_REF:0000107 MGI:5634837 NCBI chr16:3,695,667...3,718,234
Ensembl chr16:3,697,032...3,718,234
JBrowse link
paraxial mesoderm morphogenesis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nckap1 NCK-associated protein 1 acts_upstream_of_or_within ISO MGI:3578145 (MGI:3701029|PMID:16831833) RGD PMID:16831833 MGI:3701029 NCBI chr 3:65,417,450...65,491,769
Ensembl chr 3:65,417,453...65,492,217
JBrowse link
G Smad2 SMAD family member 2 involved_in
acts_upstream_of_or_within
ISS
ISO
GO_REF:0000024
MGI:1857691 (MGI:3039049|PMID:15084457)
UniProt
RGD
PMID:15084457 GO_REF:0000024 MGI:3039049 NCBI chr18:69,849,884...69,918,926
Ensembl chr18:69,850,377...69,912,323
JBrowse link
G Smad3 SMAD family member 3 acts_upstream_of_or_within ISO MGI:1857696 (MGI:3039049|PMID:15084457) RGD PMID:15084457 MGI:3039049 NCBI chr 8:64,126,829...64,236,960
Ensembl chr 8:64,110,039...64,236,960
JBrowse link
paraxial mesoderm structural organization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISO MGI:2158343 (MGI:3702797|PMID:16943278) RGD PMID:16943278 MGI:3702797 NCBI chr16:9,736,390...9,829,825
Ensembl chr16:9,736,630...9,780,616
JBrowse link
paraxial mesodermal cell fate commitment term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Foxc2 forkhead box C2 acts_upstream_of_or_within ISO MGI:1857865 (MGI:86990|PMID:9106663) RGD PMID:9106663 MGI:86990 NCBI chr19:49,186,034...49,188,736
Ensembl chr19:49,185,662...49,188,737
JBrowse link
G Wnt3a Wnt family member 3A acts_upstream_of_or_within ISO MGI:1857489 (MGI:86727|PMID:9126297) RGD PMID:9126297 MGI:86727 NCBI chr10:44,034,174...44,078,463
Ensembl chr10:44,034,194...44,078,324
JBrowse link
positive regulation of mesodermal cell differentiation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gja1 gap junction protein, alpha 1 involved_in ISO (PMID:30599359) RGD PMID:30599359 NCBI chr20:35,756,007...35,768,481
Ensembl chr20:35,755,991...35,768,582
JBrowse link
positive regulation of mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Wnt3a Wnt family member 3A involved_in ISO (PMID:20559569) RGD PMID:20559569 NCBI chr10:44,034,174...44,078,463
Ensembl chr10:44,034,194...44,078,324
JBrowse link
regulation of lateral mesodermal cell fate specification term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bmpr1a bone morphogenetic protein receptor type 1A acts_upstream_of_or_within ISO MGI:95522 (MGI:3702797|PMID:16943278) RGD PMID:16943278 MGI:3702797 NCBI chr16:9,736,390...9,829,825
Ensembl chr16:9,736,630...9,780,616
JBrowse link
G Fgfr1 Fibroblast growth factor receptor 1 acts_upstream_of_or_within ISO MGI:1338938 (MGI:3702797|PMID:16943278) RGD PMID:16943278 MGI:3702797 NCBI chr16:66,492,445...66,546,731
Ensembl chr16:66,494,042...66,547,350
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19497
    developmental process 6889
      anatomical structure morphogenesis 2911
        tissue morphogenesis 711
          mesoderm morphogenesis 79
            axial mesoderm morphogenesis + 5
            intermediate mesoderm morphogenesis + 1
            lateral mesoderm morphogenesis + 3
            mesoderm formation + 75
            mesoderm structural organization + 1
            paraxial mesoderm morphogenesis + 13
Path 2
Term Annotations click to browse term
  biological_process 19497
    developmental process 6889
      anatomical structure development 6306
        tissue development 2109
          mesoderm development 126
            mesoderm morphogenesis 79
              axial mesoderm morphogenesis + 5
              intermediate mesoderm morphogenesis + 1
              lateral mesoderm morphogenesis + 3
              mesoderm formation + 75
              mesoderm structural organization + 1
              paraxial mesoderm morphogenesis + 13
paths to the root