Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:vesicle docking
go back to main search page
Accession:GO:0048278 term browser browse the term
Definition:The initial attachment of a transport vesicle membrane to the target membrane, mediated by proteins protruding from the membrane of the vesicle and the target membrane. Docking requires only that the two membranes come close enough for these proteins to interact and adhere.
Synonyms:exact_synonym: vesicle to membrane docking


show annotations for term's descendants           Sort by:
vesicle docking term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cav2 caveolin 2 involved_in ISS
IEA
ISO 		PMID:12743374
GO_REF:0000107
(PMID:12743374) 		Ensembl
RGD		 PMID:12743374 PMID:12743374 GO_REF:0000107, RGD:8554755 NCBI chr 4:46,582,681...46,590,058
Ensembl chr 4:46,582,096...46,591,425 		JBrowse link
G Cep83 centrosomal protein 83 involved_in ISO (PMID:23530209) RGD PMID:23530209 NCBI chr 7:31,167,198...31,276,513
Ensembl chr 7:31,167,216...31,276,716 		JBrowse link
G LOC103690878 syntaxin-3-like involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr  X:77,770,801...77,771,694 JBrowse link
G Ndrg4 NDRG family member 4 involved_in IEA
ISO 		GO_REF:0000107
(PMID:24048452) 		Ensembl
RGD		 PMID:24048452 GO_REF:0000107 NCBI chr19:9,357,470...9,393,465
Ensembl chr19:9,357,470...9,392,972 		JBrowse link
G Popdc1 popeye domain cAMP effector 1 involved_in ISO (PMID:24048452) RGD PMID:24048452 NCBI chr20:50,401,611...50,442,653
Ensembl chr20:50,401,733...50,442,645 		JBrowse link
G Stx11 syntaxin 11 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:9,111,216...9,140,227
Ensembl chr 1:9,107,796...9,178,455 		JBrowse link
G Stx12 syntaxin 12 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:150,347,554...150,376,426
Ensembl chr 5:150,334,836...150,376,346 		JBrowse link
G Stx16 syntaxin 16 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:183,271,417...183,300,746
Ensembl chr 3:183,272,031...183,300,745 		JBrowse link
G Stx17 syntaxin 17 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:67,241,673...67,302,228
Ensembl chr 5:67,241,727...67,302,218 		JBrowse link
G Stx1a syntaxin 1A involved_in IBA
IEA
ISO 		GO_REF:0000033
GO_REF:0000107
(PMID:17502420) 		GO_Central
Ensembl
RGD		 PMID:17502420 GO_REF:0000033 GO_REF:0000107 NCBI chr12:27,278,517...27,306,547
Ensembl chr12:27,278,517...27,306,471 		JBrowse link
G Stx1b syntaxin 1B involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:191,846,016...191,864,878
Ensembl chr 1:191,833,743...191,871,633 		JBrowse link
G Stx2 syntaxin 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:33,315,447...33,350,788
Ensembl chr12:33,315,750...33,350,788 		JBrowse link
G Stx3 syntaxin 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:217,940,697...218,114,865
Ensembl chr 1:217,909,169...218,110,466 		JBrowse link
G Stx4 syntaxin 4 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:191,880,549...191,890,333
Ensembl chr 1:191,881,559...191,896,774 		JBrowse link
G Stx5 syntaxin 5 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:215,066,532...215,082,685
Ensembl chr 1:215,067,317...215,082,683 		JBrowse link
G Stx6 syntaxin 6 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr13:69,882,647...69,928,895
Ensembl chr13:69,882,620...69,931,036 		JBrowse link
G Stx7 syntaxin 7 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 1:23,016,330...23,056,579
Ensembl chr 1:23,016,336...23,056,465 		JBrowse link
G Stx8 syntaxin 8 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr10:53,154,572...53,393,912
Ensembl chr10:53,153,523...53,429,541 		JBrowse link
G Syt1 synaptotagmin 1 involved_in IDA
IMP 		PMID:24001110 RGD
DisProt		 PMID:22229667 PMID:24973220 PMID:24001110 RGD:7205654, RGD:616363158, RGD:407429997 NCBI chr 7:45,699,649...46,244,460
Ensembl chr 7:45,702,228...46,244,213 		JBrowse link
dense core granule docking term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Unc13a unc-13 homolog A NOT|involved_in ISO UniProtKB:Q9Z1N9 (PMID:26575293) RGD PMID:26575293 NCBI chr16:18,367,891...18,415,808
Ensembl chr16:18,367,919...18,415,899 		JBrowse link
G Unc13b unc-13 homolog B NOT|involved_in ISO UniProtKB:Q4KUS2 (PMID:26575293) RGD PMID:26575293 NCBI chr 5:62,084,809...62,299,884
Ensembl chr 5:62,084,819...62,299,884 		JBrowse link
Golgi vesicle docking term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Uso1 USO1 vesicle transport factor involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr14:16,150,921...16,216,389
Ensembl chr14:16,150,923...16,216,389 		JBrowse link
phagosome-lysosome docking term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in ISO
IEA 		(PMID:26450516)
GO_REF:0000107 		RGD
Ensembl		 PMID:26450516 GO_REF:0000107 NCBI chr 1:190,586,649...190,600,034
Ensembl chr 1:190,586,650...190,597,929 		JBrowse link
positive regulation of vesicle docking term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stxbp1 syntaxin binding protein 1 IDA RGD PMID:22810233 RGD:12903989 NCBI chr 3:36,474,428...36,536,120
Ensembl chr 3:36,474,428...36,536,058 		JBrowse link
regulation of exocyst assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ncam1 neural cell adhesion molecule 1 acts_upstream_of_or_within ISO (PMID:21389209) RGD PMID:21389209 NCBI chr 8:58,762,088...59,062,131
Ensembl chr 8:58,762,116...59,061,971 		JBrowse link
G Ralb RAS like proto-oncogene B involved_in IDA PMID:16382162 UniProt PMID:16382162 RGD:8554641 NCBI chr13:33,140,834...33,176,997
Ensembl chr13:33,140,835...33,176,998 		JBrowse link
regulation of synaptic vesicle docking term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Camk2a calcium/calmodulin-dependent protein kinase II alpha involved_in ISO (PMID:17660813) RGD PMID:17660813 NCBI chr18:56,648,779...56,711,505
Ensembl chr18:56,649,025...56,711,504 		JBrowse link
G Septin5 septin 5 involved_in ISO (PMID:20624595) RGD PMID:20624595 NCBI chr11:95,877,946...95,883,738
Ensembl chr11:95,873,864...95,883,737 		JBrowse link
synaptic vesicle docking term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctbp2 C-terminal binding protein 2 involved_in ISO
IEA 		(PMID:26929012)
GO_REF:0000107 		RGD
Ensembl		 PMID:26929012 GO_REF:0000107 NCBI chr 1:197,208,536...197,348,802
Ensembl chr 1:197,212,133...197,254,261 		JBrowse link
G Ppfia3 PTPRF interacting protein alpha 3 involved_in IEA
ISO 		GO_REF:0000107
(PMID:29439199) 		Ensembl
RGD		 PMID:29439199 GO_REF:0000107 NCBI chr 1:104,953,598...104,982,373
Ensembl chr 1:104,953,598...104,982,278 		JBrowse link
G Rims1 regulating synaptic membrane exocytosis 1 involved_in ISO
IBA 		(PMID:21241895)
GO_REF:0000033 		RGD
GO_Central		 PMID:21241895 GO_REF:0000033 NCBI chr 9:32,193,352...32,692,998
Ensembl chr 9:32,193,352...32,692,772 		JBrowse link
G Rims2 regulating synaptic membrane exocytosis 2 involved_in ISO
IBA 		(PMID:21241895)
GO_REF:0000033 		RGD
GO_Central		 PMID:21241895 GO_REF:0000033 NCBI chr 7:72,133,004...72,644,059
Ensembl chr 7:72,133,170...72,645,499 		JBrowse link
G Rims3 regulating synaptic membrane exocytosis 3 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 5:139,714,302...139,754,145
Ensembl chr 5:139,714,320...139,754,145 		JBrowse link
G Sptbn2 spectrin, beta, non-erythrocytic 2 involved_in TAS PMID:9704016 UniProt PMID:9704016 RGD:70020 NCBI chr 1:211,432,373...211,473,016
Ensembl chr 1:211,432,373...211,473,306 		JBrowse link
G Stx1a syntaxin 1A involved_in IEP PMID:1321498 UniProt PMID:1321498 RGD:8553325 NCBI chr12:27,278,517...27,306,547
Ensembl chr12:27,278,517...27,306,471 		JBrowse link
G Stx1b syntaxin 1B involved_in ISS
ISO
IEA 		GO_REF:0000024
UniProtKB:O35526 (PMID:24133272), (PMID:24587181)
GO_REF:0000107 		ParkinsonsUK-UCL
RGD
Ensembl		 PMID:24133272 PMID:24587181 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:191,846,016...191,864,878
Ensembl chr 1:191,833,743...191,871,633 		JBrowse link
G Stx3 syntaxin 3 TAS RGD PMID:7690687 RGD:68313 NCBI chr 1:217,940,697...218,114,865
Ensembl chr 1:217,909,169...218,110,466 		JBrowse link
G Stx4 syntaxin 4 IDA RGD PMID:7690687 RGD:68313 NCBI chr 1:191,880,549...191,890,333
Ensembl chr 1:191,881,559...191,896,774 		JBrowse link
G Syde1 synapse defective Rho GTPase homolog 1 acts_upstream_of_or_within ISO MGI:4841821 (PMID:23791195) RGD PMID:23791195 NCBI chr 7:11,683,505...11,689,491
Ensembl chr 7:11,681,111...11,690,443 		JBrowse link
G Tprg1l tumor protein p63 regulated 1-like acts_upstream_of_or_within ISO
IEA 		MGI:6385150 (PMID:33431696)
GO_REF:0000107 		RGD
Ensembl		 PMID:33431696 GO_REF:0000107 NCBI chr 5:170,004,577...170,007,784
Ensembl chr 5:170,004,577...170,007,983 		JBrowse link
G Unc13a unc-13 homolog A involved_in
acts_upstream_of_or_within 		IBA
ISO 		GO_REF:0000033
MGI:1342278 (PMID:19558619) 		GO_Central
RGD		 PMID:19558619 GO_REF:0000033 NCBI chr16:18,367,891...18,415,808
Ensembl chr16:18,367,919...18,415,899 		JBrowse link
G Unc13b unc-13 homolog B involved_in
acts_upstream_of_or_within 		IBA
ISO 		GO_REF:0000033
MGI:3051532 (PMID:19558619) 		GO_Central
RGD		 PMID:19558619 GO_REF:0000033 NCBI chr 5:62,084,809...62,299,884
Ensembl chr 5:62,084,819...62,299,884 		JBrowse link
G Unc13c unc-13 homolog C involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:83,127,650...83,553,822
Ensembl chr 8:83,128,523...83,553,822 		JBrowse link
G Vamp2 vesicle-associated membrane protein 2 involved_in ISO
IMP 		(PMID:25374362) RGD PMID:25374362 PMID:23663838 RGD:616390116 NCBI chr10:54,292,423...54,296,657
Ensembl chr10:54,292,806...54,296,654 		JBrowse link
vesicle docking involved in exocytosis term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cftr CF transmembrane conductance regulator involved_in IEA GO_REF:0000107 Ensembl GO_REF:0000107 NCBI chr 4:47,422,084...47,694,646
Ensembl chr 4:47,526,735...47,694,643 		JBrowse link
G Cplx2 complexin 2 involved_in TAS PMID:7553862 PINC PMID:7553862 RGD:70701 NCBI chr17:10,224,673...10,297,974
Ensembl chr17:10,228,449...10,297,467 		JBrowse link
G Exoc2 exocyst complex component 2 involved_in IEA
ISO 		GO_REF:0000107
(PMID:12459492) 		Ensembl
RGD		 PMID:12459492 GO_REF:0000107 NCBI chr17:33,714,949...33,906,901
Ensembl chr17:33,715,008...33,901,944 		JBrowse link
G Exoc4 exocyst complex component 4 involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr 4:62,774,896...63,551,541
Ensembl chr 4:62,774,935...63,552,943 		JBrowse link
G Gnao1 G protein subunit alpha o1 acts_upstream_of_negative_effect ISO MGI:4941848 (PMID:20622165) RGD PMID:20622165 NCBI chr19:11,040,788...11,198,437
Ensembl chr19:11,040,788...11,198,437 		JBrowse link
G Kcnb1 potassium voltage-gated channel subfamily B member 1 involved_in IDA PMID:20484665 UniProt PMID:20484665 RGD:10047179 NCBI chr 3:176,239,285...176,332,408
Ensembl chr 3:176,242,589...176,332,408 		JBrowse link
G Nrxn1 neurexin 1 acts_upstream_of_or_within IMP PMID:22235116 MGI PMID:22235116 RGD:8553305 NCBI chr 6:8,931,360...10,077,381
Ensembl chr 6:8,935,523...10,077,374 		JBrowse link
G Plek pleckstrin involved_in IEA
ISO 		GO_REF:0000107
(PMID:19190246) 		Ensembl
RGD		 PMID:19190246 GO_REF:0000107 NCBI chr14:95,598,650...95,631,326
Ensembl chr14:95,598,654...95,655,721 		JBrowse link
G Rab8a RAB8A, member RAS oncogene family involved_in ISO
IEA 		(PMID:17574030)
GO_REF:0000107 		RGD
Ensembl		 PMID:17574030 GO_REF:0000107 NCBI chr16:17,688,049...17,709,412
Ensembl chr16:17,688,050...17,709,477 		JBrowse link
G Stx1b syntaxin 1B involved_in ISS
IEA
ISO 		GO_REF:0000024
GO_REF:0000107
(PMID:18703708) 		ParkinsonsUK-UCL
Ensembl
RGD		 PMID:18703708 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:191,846,016...191,864,878
Ensembl chr 1:191,833,743...191,871,633 		JBrowse link
G Stxbp1 syntaxin binding protein 1 involved_in
acts_upstream_of_or_within 		ISS
IEA
ISO
IBA 		GO_REF:0000024
GO_REF:0000107
(PMID:18703708)
MGI:2183278 (PMID:11545717)
GO_REF:0000033 		ParkinsonsUK-UCL
Ensembl
RGD
GO_Central		 PMID:11545717 PMID:18703708 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:36,474,428...36,536,120
Ensembl chr 3:36,474,428...36,536,058 		JBrowse link
G Stxbp2 syntaxin binding protein 2 involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr12:6,487,265...6,498,351
Ensembl chr12:6,487,297...6,504,212 		JBrowse link
G Stxbp3 syntaxin binding protein 3 involved_in TAS
IBA 		GO_REF:0000033 GO_Central
RGD		 PMID:15563604 GO_REF:0000033, RGD:1302922 NCBI chr 2:199,130,725...199,173,823
Ensembl chr 2:199,130,725...199,173,823 		JBrowse link
G Sytl2 synaptotagmin-like 2 involved_in ISO (PMID:18812475) RGD PMID:18812475 NCBI chr 1:153,685,403...153,791,758
Ensembl chr 1:153,665,327...153,791,756 		JBrowse link
G Vps11 VPS11 core subunit of CORVET and HOPS complexes involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 8:53,580,939...53,595,378
Ensembl chr 8:53,580,939...53,595,377 		JBrowse link
G Vps18 VPS18 core subunit of CORVET and HOPS complexes involved_in IBA GO_REF:0000033 GO_Central GO_REF:0000033 NCBI chr 3:126,733,276...126,744,130
Ensembl chr 3:126,733,232...126,744,129 		JBrowse link
G Ykt6 YKT6 v-SNARE homolog involved_in ISO
IEA
ISS 		(PMID:9211930)
GO_REF:0000107 		RGD
Ensembl		 PMID:9211930 PMID:9211930 GO_REF:0000107, RGD:8553660 NCBI chr14:85,041,393...85,057,347
Ensembl chr14:85,046,164...85,057,346 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20668
    cellular process 19605
      vesicle-mediated transport 1688
        vesicle docking 53
          Golgi vesicle docking 1
          negative regulation of vesicle docking 0
          phagosome-lysosome docking + 1
          positive regulation of vesicle docking 1
          regulation of vesicle docking + 5
          vesicle docking involved in exocytosis + 36
Path 2
Term Annotations click to browse term
  biological_process 20668
    localization 5832
      establishment of localization 5111
        transport 4860
          vesicle-mediated transport 1688
            vesicle docking 53
              Golgi vesicle docking 1
              negative regulation of vesicle docking 0
              phagosome-lysosome docking + 1
              positive regulation of vesicle docking 1
              regulation of vesicle docking + 5
              vesicle docking involved in exocytosis + 36
paths to the root