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ONTOLOGY REPORT - ANNOTATIONS

Term:regulation of neuronal synaptic plasticity
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Accession:GO:0048168 term browser browse the term
Definition:A process that modulates neuronal synaptic plasticity, the ability of neuronal synapses to change as circumstances require. They may alter function, such as increasing or decreasing their sensitivity, or they may increase or decrease in actual numbers.
Comment:Note that the syntax of the definition of this term is different from the usual regulation syntax because it describes regulation of a trait rather than regulation of a process.
Synonyms:only_in_taxon: NCBITaxon:6072 ! Eumetazoa

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regulation of neuronal synaptic plasticity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acp4 acid phosphatase 4 involved_in ISO (PMID:15219672) UniProt PMID:15219672 NCBI chrNW_004955559:481,953...488,464
Ensembl chrNW_004955559:483,071...486,592 		JBrowse link
G Arc activity regulated cytoskeleton associated protein ISO RGD PMID:7857651 RGD:61538 NCBI chrNW_004955454:1,379,998...1,383,414
Ensembl chrNW_004955454:1,379,998...1,383,414 		JBrowse link
G Bcan brevican ISO RGD PMID:15935069 RGD:1578390 NCBI chrNW_004955545:2,723,780...2,739,334
Ensembl chrNW_004955545:2,723,780...2,739,450 		JBrowse link
G Bhlhe40 basic helix-loop-helix family member e40 ISO RGD PMID:9532582 RGD:68312 NCBI chrNW_004955421:8,463,337...8,468,877
Ensembl chrNW_004955421:8,463,018...8,468,877 		JBrowse link
G Bhlhe41 basic helix-loop-helix family member e41 ISO RGD PMID:9532582 RGD:68312 NCBI chrNW_004955413:21,100,021...21,103,358 JBrowse link
G Camk2a calcium/calmodulin dependent protein kinase II alpha acts_upstream_of_or_within ISO (PMID:17610578) MGI PMID:17610578 NCBI chrNW_004955415:4,247,307...4,307,402
Ensembl chrNW_004955415:4,247,014...4,307,458 		JBrowse link
G Chrd chordin involved_in ISO (PMID:17634368) MGI PMID:17634368 NCBI chrNW_004955420:23,111,690...23,120,038
Ensembl chrNW_004955420:23,112,093...23,120,036 		JBrowse link
G Cpeb1 cytoplasmic polyadenylation element binding protein 1 acts_upstream_of_or_within ISO (PMID:15169862) MGI PMID:15169862 NCBI chrNW_004955416:13,963,300...14,038,691
Ensembl chrNW_004955416:13,981,657...14,039,705 		JBrowse link
G Dlg4 discs large MAGUK scaffold protein 4 involved_in ISO PMID:19596852 UniProt PMID:19596852 RGD:21201259 NCBI chrNW_004955467:9,691,733...9,715,872
Ensembl chrNW_004955467:9,690,469...9,715,872 		JBrowse link
G Egr2 early growth response 2 ISO RGD PMID:8619872 RGD:728620 NCBI chrNW_004955425:16,055,748...16,068,429
Ensembl chrNW_004955425:16,055,748...16,060,048 		JBrowse link
G Ephb2 EPH receptor B2 acts_upstream_of_or_within ISO (PMID:11754835) MGI PMID:11754835 NCBI chrNW_004955452:2,844,713...2,986,790
Ensembl chrNW_004955452:2,844,713...2,980,445 		JBrowse link
G Grin1 glutamate ionotropic receptor NMDA type subunit 1 acts_upstream_of_or_within ISO (PMID:15576450) MGI PMID:15576450 NCBI chrNW_004955513:5,154,864...5,178,636
Ensembl chrNW_004955513:5,154,864...5,178,636 		JBrowse link
G Gsk3b glycogen synthase kinase 3 beta ISO RGD PMID:17329210 RGD:1641844 NCBI chrNW_004955427:19,489,972...19,671,137
Ensembl chrNW_004955427:19,495,422...19,671,137 		JBrowse link
G Jph3 junctophilin 3 involved_in
acts_upstream_of_or_within		 ISO (MGI:3654871|PMID:16809425)
(PMID:17347645)		 UniProt
MGI		 PMID:16809425 PMID:17347645 MGI:3654871 NCBI chrNW_004955541:1,969,197...2,020,868
Ensembl chrNW_004955541:1,969,194...2,017,588 		JBrowse link
G Kcnn2 potassium calcium-activated channel subfamily N member 2 ISO RGD PMID:21521760 RGD:7205439 NCBI chrNW_004955408:34,223,523...34,366,191
Ensembl chrNW_004955408:34,109,334...34,368,114 		JBrowse link
G Mylk2 myosin light chain kinase 2 ISO RGD PMID:16515842 RGD:1600505 NCBI chrNW_004955422:29,141,699...29,154,927
Ensembl chrNW_004955422:29,141,348...29,154,927 		JBrowse link
G Ncdn neurochondrin ISO RGD PMID:9398642 RGD:724406 NCBI chrNW_004955452:13,650,016...13,659,382
Ensembl chrNW_004955452:13,649,539...13,659,436 		JBrowse link
G Nog noggin involved_in ISO (PMID:17634368) MGI PMID:17634368 NCBI chrNW_004955451:6,192,368...6,193,766
Ensembl chrNW_004955451:6,193,042...6,193,740 		JBrowse link
G Nsmf NMDA receptor synaptonuclear signaling and neuronal migration factor involved_in ISO PMID:18303947 UniProt PMID:18303947 RGD:8553324 NCBI chrNW_004955513:5,368,384...5,376,480
Ensembl chrNW_004955513:5,369,218...5,375,670 		JBrowse link
G Pmch pro-melanin concentrating hormone ISO RGD PMID:11814630 RGD:729531 NCBI chrNW_004955405:37,357,468...37,360,695
Ensembl chrNW_004955405:37,356,755...37,360,695 		JBrowse link
G Rac1 Rac family small GTPase 1 acts_upstream_of_or_within ISO (PMID:25865668) MGI PMID:25865668 NCBI chrNW_004955460:13,270,159...13,295,562
Ensembl chrNW_004955460:13,270,159...13,311,351 		JBrowse link
G Rasgrf1 Ras protein specific guanine nucleotide releasing factor 1 acts_upstream_of_or_within ISO (PMID:11749043) MGI PMID:11749043 NCBI chrNW_004955533:69,736...167,626
Ensembl chrNW_004955533:70,897...167,460 		JBrowse link
G S100b S100 calcium binding protein B acts_upstream_of_or_within ISO (PMID:11891290) MGI PMID:11891290 NCBI chrNW_004955407:42,972,584...42,980,510
Ensembl chrNW_004955407:42,972,584...42,980,510 		JBrowse link
G Snca synuclein alpha acts_upstream_of_or_within ISO (PMID:17610578) MGI PMID:17610578 NCBI chrNW_004955405:854,011...962,741
Ensembl chrNW_004955405:853,946...965,403 		JBrowse link
G Star steroidogenic acute regulatory protein ISO RGD PMID:16673174 RGD:1600077 NCBI chrNW_004955463:13,760,089...13,765,245
Ensembl chrNW_004955463:13,760,089...13,765,244 		JBrowse link
G Vgf VGF nerve growth factor inducible ISO synthetic rat C-terminal VGF peptides RGD PMID:14645472 RGD:2289061 NCBI chrNW_004955456:16,119,073...16,126,968
Ensembl chrNW_004955456:16,119,073...16,126,968 		JBrowse link
G Zdhhc2 zinc finger DHHC-type palmitoyltransferase 2 involved_in ISO PMID:19596852 UniProt PMID:19596852 RGD:21201259 NCBI chrNW_004955463:315,531...345,712
Ensembl chrNW_004955463:315,531...345,716 		JBrowse link
negative regulation of short-term neuronal synaptic plasticity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Syt4 synaptotagmin 4 involved_in ISO (MGI:5796263|PMID:15390175) ParkinsonsUK-UCL PMID:15390175 MGI:5796263 NCBI chrNW_004955402:29,195,124...29,204,816
Ensembl chrNW_004955402:29,193,455...29,204,975 		JBrowse link
positive regulation of long-term neuronal synaptic plasticity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bdnf brain derived neurotrophic factor ISO RGD PMID:14699417 RGD:4891114 NCBI chrNW_004955476:6,773,244...6,822,201
Ensembl chrNW_004955476:6,772,088...6,822,588 		JBrowse link
G Ephb2 EPH receptor B2 acts_upstream_of_or_within ISO (PMID:11754836) MGI PMID:11754836 NCBI chrNW_004955452:2,844,713...2,986,790
Ensembl chrNW_004955452:2,844,713...2,980,445 		JBrowse link
G Fmr1 Fragile X messenger ribonucleoprotein 1 ISO RGD PMID:28894415 RGD:38501107 NCBI chrNW_004955498:566,741...594,837
Ensembl chrNW_004955498:566,688...595,360 		JBrowse link
G Grm5 glutamate metabotropic receptor 5 ISO RGD PMID:12740378 RGD:731147 NCBI chrNW_004955414:4,424,245...4,919,399 JBrowse link
G Kdr kinase insert domain receptor ISO RGD PMID:18221855 RGD:2292019 NCBI chrNW_004955447:15,810,816...15,851,702
Ensembl chrNW_004955447:15,810,815...15,853,583 		JBrowse link
G Kit KIT proto-oncogene, receptor tyrosine kinase ISO RGD PMID:11112797 RGD:2292520 NCBI chrNW_004955447:16,149,014...16,226,151
Ensembl chrNW_004955447:16,148,605...16,226,734 		JBrowse link
G Neurl1 neuralized E3 ubiquitin protein ligase 1 involved_in ISO (MGI:5300629|PMID:22153079) UniProt PMID:22153079 MGI:5300629 NCBI chrNW_004955485:7,015,969...7,046,089 JBrowse link
G Nptn neuroplastin involved_in ISO PMID:10759566 HGNC-UCL PMID:10759566 RGD:8553916 NCBI chrNW_004955450:3,938,403...4,002,694
Ensembl chrNW_004955450:3,938,403...4,004,059 		JBrowse link
G Shank3 SH3 and multiple ankyrin repeat domains 3 involved_in ISO (MGI:5285139|PMID:21167025) BHF-UCL PMID:21167025 MGI:5285139 NCBI chrNW_004955413:33,660,025...33,714,649
Ensembl chrNW_004955413:33,660,022...33,712,796 		JBrowse link
regulation of long-term neuronal synaptic plasticity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Agt angiotensinogen ISO RGD PMID:11282364 RGD:1582105 NCBI chrNW_004955492:7,863,662...7,874,863
Ensembl chrNW_004955492:7,866,833...7,873,357 		JBrowse link
G App amyloid beta precursor protein involved_in ISO (PMID:23921129) ARUK-UCL PMID:23921129 NCBI chrNW_004955407:25,725,259...25,973,582
Ensembl chrNW_004955407:25,722,849...25,974,268 		JBrowse link
G Bdnf brain derived neurotrophic factor ISO RGD PMID:12201640 RGD:724690 NCBI chrNW_004955476:6,773,244...6,822,201
Ensembl chrNW_004955476:6,772,088...6,822,588 		JBrowse link
G Camk2b calcium/calmodulin dependent protein kinase II beta acts_upstream_of_or_within ISO (PMID:19503086) MGI PMID:19503086 NCBI chrNW_004955456:7,711,583...7,760,506
Ensembl chrNW_004955456:7,713,552...7,760,207 		JBrowse link
G Dlg4 discs large MAGUK scaffold protein 4 acts_upstream_of_or_within ISO (PMID:12427827) MGI PMID:12427827 NCBI chrNW_004955467:9,691,733...9,715,872
Ensembl chrNW_004955467:9,690,469...9,715,872 		JBrowse link
G Drd2 dopamine receptor D2 acts_upstream_of_or_within ISO (PMID:9169514) MGI PMID:9169514 NCBI chrNW_004955412:15,054,255...15,114,558
Ensembl chrNW_004955412:15,054,038...15,114,573 		JBrowse link
G Egr1 early growth response 1 ISO RGD PMID:16930406 RGD:1626499 NCBI chrNW_004955418:2,001,509...2,005,269
Ensembl chrNW_004955418:2,002,699...2,005,007 		JBrowse link
G Fcgr2b Fc fragment of IgG receptor IIb involved_in ISO (MGI:5514474|PMID:23921129) ARUK-UCL PMID:23921129 MGI:5514474 NCBI chrNW_004955462:14,639,396...14,653,801 JBrowse link
G Grik2 glutamate ionotropic receptor kainate type subunit 2 acts_upstream_of_or_within ISO (PMID:11182092), (PMID:12947409), (PMID:15673679), (PMID:16219388) MGI PMID:11182092 PMID:12947409 PMID:15673679 PMID:16219388 NCBI chrNW_004955411:27,096,214...27,759,503
Ensembl chrNW_004955411:27,103,470...27,801,177 		JBrowse link
G Grin1 glutamate ionotropic receptor NMDA type subunit 1 acts_upstream_of_or_within ISO (PMID:17313573)
(PMID:17015831)
(PMID:10818139)		 MGI PMID:10818139 PMID:17015831 PMID:17313573 NCBI chrNW_004955513:5,154,864...5,178,636
Ensembl chrNW_004955513:5,154,864...5,178,636 		JBrowse link
G Grin2a glutamate ionotropic receptor NMDA type subunit 2A ISO RGD PMID:16904707 PMID:17655746 RGD:1642204 RGD:1642207 NCBI chrNW_004955442:8,171,114...8,565,187
Ensembl chrNW_004955442:8,174,232...8,562,059 		JBrowse link
G Grin2b glutamate ionotropic receptor NMDA type subunit 2B ISO RGD PMID:16904707 PMID:17655746 RGD:1642204 RGD:1642207 NCBI chrNW_004955413:10,358,931...10,780,004
Ensembl chrNW_004955413:10,376,597...10,779,145 		JBrowse link
G Grm5 glutamate metabotropic receptor 5 acts_upstream_of_or_within ISO (PMID:16024054) MGI PMID:16024054 NCBI chrNW_004955414:4,424,245...4,919,399 JBrowse link
G Hras HRas proto-oncogene, GTPase acts_upstream_of_or_within ISO (PMID:12427827) MGI PMID:12427827 NCBI chrNW_004955476:11,508,446...11,510,333
Ensembl chrNW_004955476:11,508,126...11,510,333 		JBrowse link
G Kcnj10 potassium inwardly rectifying channel subfamily J member 10 acts_upstream_of_or_within ISO (PMID:17942730) MGI PMID:17942730 NCBI chrNW_004955468:11,828,525...11,860,365
Ensembl chrNW_004955468:11,828,525...11,860,365 		JBrowse link
G Kras KRAS proto-oncogene, GTPase acts_upstream_of_or_within ISO (PMID:11793011) MGI PMID:11793011 NCBI chrNW_004955413:20,298,852...20,328,756
Ensembl chrNW_004955413:20,298,824...20,328,758 		JBrowse link
G Lnpep leucyl and cystinyl aminopeptidase ISO RGD PMID:11282364 RGD:1582105 NCBI chrNW_004955418:15,631,703...15,718,711
Ensembl chrNW_004955418:15,640,143...15,718,711 		JBrowse link
G Neto1 neuropilin and tolloid like 1 involved_in ISO (MGI:3836361|PMID:19243221) UniProt PMID:19243221 MGI:3836361 NCBI chrNW_004955402:56,262,137...56,376,105
Ensembl chrNW_004955402:56,262,137...56,376,142 		JBrowse link
G Nf1 neurofibromin 1 acts_upstream_of_or_within ISO (PMID:11793011) MGI PMID:11793011 NCBI chrNW_004955481:6,145,855...6,404,179
Ensembl chrNW_004955481:6,145,855...6,404,179 		JBrowse link
G Rab11a RAB11A, member RAS oncogene family ISO RGD PMID:18045925 RGD:2306457 NCBI chrNW_004955450:9,638,761...9,656,291
Ensembl chrNW_004955450:9,638,761...9,656,603 		JBrowse link
G Rab5a RAB5A, member RAS oncogene family ISO RGD PMID:18653660 RGD:2306450 NCBI chrNW_004955430:11,991,548...12,040,003 JBrowse link
G Rab8a RAB8A, member RAS oncogene family ISO RGD PMID:15297461 PMID:18045925 RGD:2306456 RGD:2306457 NCBI chrNW_004955524:1,403,811...1,416,005
Ensembl chrNW_004955524:1,403,811...1,416,005 		JBrowse link
G Rims1 regulating synaptic membrane exocytosis 1 acts_upstream_of_or_within ISO (PMID:11797010) MGI PMID:11797010 NCBI chrNW_004955488:6,999,128...7,196,583
Ensembl chrNW_004955488:6,936,952...7,197,022 		JBrowse link
G Snca synuclein alpha acts_upstream_of_or_within ISO (PMID:15510220) MGI PMID:15510220 NCBI chrNW_004955405:854,011...962,741
Ensembl chrNW_004955405:853,946...965,403 		JBrowse link
G Syngap1 synaptic Ras GTPase activating protein 1 acts_upstream_of_or_within ISO (PMID:15781580)
(PMID:12427827)		 MGI PMID:12427827 PMID:15781580 NCBI chrNW_004955437:1,950,559...1,981,004
Ensembl chrNW_004955437:1,950,602...1,979,251 		JBrowse link
G Syngr1 synaptogyrin 1 involved_in ISO (MGI:1349221|PMID:10595519) UniProt PMID:10595519 MGI:1349221 NCBI chrNW_004955413:25,244,679...25,269,725
Ensembl chrNW_004955413:25,244,647...25,269,725 		JBrowse link
G Synpo synaptopodin involved_in ISO (MGI:2673780|PMID:12928494) SynGO-UCL PMID:12928494 MGI:2673780 NCBI chrNW_004955415:3,929,781...3,977,769
Ensembl chrNW_004955415:3,932,192...3,990,022 		JBrowse link
G Syp synaptophysin involved_in ISO (MGI:1349221|PMID:10595519) UniProt PMID:10595519 MGI:1349221 NCBI chrNW_004955543:675,294...689,579
Ensembl chrNW_004955543:675,294...689,686 		JBrowse link
regulation of short-term neuronal synaptic plasticity term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp1a3 ATPase Na+/K+ transporting subunit alpha 3 acts_upstream_of_or_within ISO (PMID:25523819) MGI PMID:25523819 NCBI chrNW_004955555:869,508...892,510
Ensembl chrNW_004955555:869,325...893,542 		JBrowse link
G Bdnf brain derived neurotrophic factor ISO RGD PMID:12201640 RGD:724690 NCBI chrNW_004955476:6,773,244...6,822,201
Ensembl chrNW_004955476:6,772,088...6,822,588 		JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in ISO (MGI:6111006|PMID:29135436), (MGI:6256925|PMID:29780879) UniProt PMID:29135436 PMID:29780879 MGI:6111006 MGI:6256925 NCBI chrNW_004955493:6,696,520...6,707,849
Ensembl chrNW_004955493:6,696,241...6,707,849 		JBrowse link
G Grik1 glutamate ionotropic receptor kainate type subunit 1 ISO RGD PMID:17395219 RGD:1642466 NCBI chrNW_004955407:28,899,643...29,308,936
Ensembl chrNW_004955407:28,899,899...29,308,470 		JBrowse link
G Grik2 glutamate ionotropic receptor kainate type subunit 2 involved_in
acts_upstream_of_or_within		 ISO (PMID:15537878)
(PMID:11182092)		 UniProt
MGI		 PMID:11182092 PMID:15537878 NCBI chrNW_004955411:27,096,214...27,759,503
Ensembl chrNW_004955411:27,103,470...27,801,177 		JBrowse link
G Kmt2a lysine methyltransferase 2A acts_upstream_of_or_within ISO (PMID:25834037) MGI PMID:25834037 NCBI chrNW_004955412:19,586,435...19,670,149
Ensembl chrNW_004955412:19,586,141...19,665,527 		JBrowse link
G Ppfia3 PTPRF interacting protein alpha 3 ISO RGD PMID:11797009 RGD:633666 NCBI chrNW_004955559:1,587,633...1,610,065
Ensembl chrNW_004955559:1,587,638...1,610,064 		JBrowse link
G Rab3a RAB3A, member RAS oncogene family involved_in ISO (MGI:3653150|PMID:9194562) ParkinsonsUK-UCL PMID:9194562 MGI:3653150 NCBI chrNW_004955524:3,220,108...3,224,376
Ensembl chrNW_004955524:3,221,366...3,224,376 		JBrowse link
G Rab3gap1 RAB3 GTPase activating protein catalytic subunit 1 involved_in ISO (MGI:3652690|PMID:16782817) ParkinsonsUK-UCL PMID:16782817 MGI:3652690 NCBI chrNW_004955440:2,551,015...2,645,938
Ensembl chrNW_004955440:2,550,982...2,646,331 		JBrowse link
G Shisa9 shisa family member 9 involved_in ISO (MGI:4440391|PMID:20185686) UniProt PMID:20185686 MGI:4440391 NCBI chrNW_004955442:5,537,372...5,817,076
Ensembl chrNW_004955442:5,540,779...5,816,865 		JBrowse link
G Slc4a10 solute carrier family 4 member 10 involved_in ISO (MGI:5829350|PMID:26136660) UniProt PMID:26136660 MGI:5829350 NCBI chrNW_004955449:11,879,070...12,159,981
Ensembl chrNW_004955449:11,879,016...12,160,065 		JBrowse link
G Slc8a2 solute carrier family 8 member A2 involved_in ISO (MGI:2664655|PMID:12818181) UniProt PMID:12818181 MGI:2664655 NCBI chrNW_004955574:1,290,907...1,315,399
Ensembl chrNW_004955574:1,288,952...1,315,401 		JBrowse link
G Syngr1 synaptogyrin 1 involved_in ISO (MGI:1349221|PMID:10595519) UniProt PMID:10595519 MGI:1349221 NCBI chrNW_004955413:25,244,679...25,269,725
Ensembl chrNW_004955413:25,244,647...25,269,725 		JBrowse link
G Syp synaptophysin involved_in ISO (MGI:1349221|PMID:10595519) UniProt PMID:10595519 MGI:1349221 NCBI chrNW_004955543:675,294...689,579
Ensembl chrNW_004955543:675,294...689,686 		JBrowse link
G Unc13a unc-13 homolog A acts_upstream_of_or_within ISO (PMID:11832228) MGI PMID:11832228 NCBI chrNW_004955524:725,353...769,745 JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12346
    biological regulation 8880
      regulation of biological quality 2623
        regulation of synaptic plasticity 243
          regulation of neuronal synaptic plasticity 70
            regulation of long-term neuronal synaptic plasticity + 35
            regulation of neuronal synaptic plasticity in response to neurotrophin 0
            regulation of short-term neuronal synaptic plasticity + 16
Path 2
Term Annotations click to browse term
  biological_process 12346
    biological regulation 8880
      regulation of biological process 8618
        signaling 4445
          cell-cell signaling 1186
            synaptic signaling 757
              trans-synaptic signaling 732
                anterograde trans-synaptic signaling 725
                  chemical synaptic transmission 725
                    modulation of chemical synaptic transmission 579
                      regulation of synaptic plasticity 243
                        regulation of neuronal synaptic plasticity 70
                          regulation of long-term neuronal synaptic plasticity + 35
                          regulation of neuronal synaptic plasticity in response to neurotrophin 0
                          regulation of short-term neuronal synaptic plasticity + 16
paths to the root