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ONTOLOGY REPORT - ANNOTATIONS


Term:eye pigmentation
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Accession:GO:0048069 term browser browse the term
Definition:Establishment of a pattern of pigment in the eye of an organism.
Synonyms:xref: Wikipedia:Eye_color


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eye pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atp6ap2 ATPase H+ transporting accessory protein 2 involved_in ISO (PMID:20093472) RGD PMID:20093472 NCBI chr  X:10,183,983...10,210,948
Ensembl chr  X:10,183,068...10,210,918
JBrowse link
G Hps1 HPS1, biogenesis of lysosomal organelles complex 3 subunit 1 acts_upstream_of_or_within ISO (MGI:4849309|PMID:21052544) RGD PMID:21052544 MGI:4849309 NCBI chr 1:241,551,180...241,577,292
Ensembl chr 1:241,551,175...241,577,268
JBrowse link
G Vhl von Hippel-Lindau tumor suppressor acts_upstream_of_or_within ISO MGI:2136645 (MGI:5429122|PMID:22627278) RGD PMID:22627278 MGI:5429122 NCBI chr 4:146,772,483...146,779,376
Ensembl chr 4:146,772,468...146,779,377
JBrowse link
negative regulation of eye pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ihh Indian hedgehog signaling molecule acts_upstream_of_or_within ISO MGI:1934258 (MGI:3807630|PMID:17464332) RGD PMID:17464332 MGI:3807630 NCBI chr 9:76,504,315...76,510,532
Ensembl chr 9:76,504,315...76,510,532
JBrowse link
regulation of eye pigmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Spns2 sphingolipid transporter 2 acts_upstream_of_or_within ISO MGI:4460276 (MGI:5442641|PMID:22664872) RGD PMID:22664872 MGI:5442641 NCBI chr10:57,067,348...57,105,969
Ensembl chr10:57,066,897...57,105,957
JBrowse link
rhodopsin metabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Grk3 G protein-coupled receptor kinase 3 IMP RGD PMID:17573483 RGD:5685371 NCBI chr12:43,624,778...43,735,375
Ensembl chr12:43,624,897...43,731,262
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19492
    pigmentation 100
      developmental pigmentation 51
        eye pigmentation 6
          compound eye pigmentation + 0
          eye pigment metabolic process + 1
          negative regulation of eye pigmentation + 1
          positive regulation of eye pigmentation + 0
          regulation of eye pigmentation + 2
paths to the root