Send us a Message



 Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes QTLs Strains Markers Community Projects Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap)  (beta) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease COVID-19 Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes GERRC (Gene Editing Rat Resource Center) Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:antigen processing and presentation of peptide antigen
go back to main search page
Accession:GO:0048002 term browser browse the term
Definition:The process in which an antigen-presenting cell expresses peptide antigen in association with an MHC protein complex on its cell surface, including proteolysis and transport steps for the peptide antigen both prior to and following assembly with the MHC protein complex. The peptide antigen is typically, but not always, processed from an endogenous or exogenous protein.
Synonyms:exact_synonym: antigen presentation, peptide antigen;   peptide antigen processing and presentation


show annotations for term's descendants           Sort by:
antigen processing and presentation of peptide antigen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctsl cathepsin L involved_in ISS
ISO		 GO_REF:0000024
(MGI:2655909|PMID:9545226), (MGI:3655445|PMID:12021314)		 UniProt
RGD		 PMID:9545226 PMID:12021314 GO_REF:0000024 MGI:2655909 MGI:3655445 NCBI chr17:764,370...770,533
Ensembl chr17:764,309...770,548 		JBrowse link
G Ctss cathepsin S involved_in ISO (PMID:8612130) RGD PMID:8612130 NCBI chr 2:183,086,437...183,114,483
Ensembl chr 2:183,086,437...183,114,483 		JBrowse link
G RT1-Ba RT1 class II, locus Ba acts_upstream_of_or_within ISO (MGI:1913231|PMID:11069069) RGD PMID:11069069 MGI:1913231 NCBI chr20:4,575,134...4,579,727
Ensembl chr20:4,575,134...4,579,744 		JBrowse link
G RT1-Bb RT1 class II, locus Bb acts_upstream_of_or_within ISO (MGI:1913231|PMID:11069069) RGD PMID:11069069 MGI:1913231 NCBI chr20:4,596,558...4,602,201
Ensembl chr20:4,596,559...4,607,597 		JBrowse link
G Slc11a1 solute carrier family 11 member 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:1857756 (MGI:3758128|PMID:17620357)
GO_REF:0000107		 RGD
Ensembl		 PMID:17620357 GO_REF:0000107 MGI:3758128 NCBI chr 9:75,957,193...75,968,115
Ensembl chr 9:75,957,316...75,968,101 		JBrowse link
antigen processing and presentation of endogenous peptide antigen via MHC class I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B2m beta-2 microglobulin involved_in ISO
IEA		 UniProtKB:P04439 (PMID:24643698)
GO_REF:0000107		 RGD
Ensembl		 PMID:24643698 GO_REF:0000107 NCBI chr 3:109,095,740...109,101,764
Ensembl chr 3:109,095,729...109,101,766 		JBrowse link
G Ide insulin degrading enzyme involved_in ISO
IEA
ISS		 (PMID:20364150)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:20364150 GO_REF:0000024 GO_REF:0000107 NCBI chr 1:235,002,984...235,102,448
Ensembl chr 1:234,995,351...235,102,440 		JBrowse link
G RT1-CE16 RT1 class I, locus CE16 involved_in ISO (PMID:1402688), (PMID:20364150), (PMID:24643698) RGD PMID:1402688 PMID:20364150 PMID:24643698 NCBI chr20:3,257,109...3,260,747
Ensembl chr20:3,257,123...3,279,563 		JBrowse link
G Tap1 transporter 1, ATP binding cassette subfamily B member involved_in IEA
IBA
ISO		 GO_REF:0000107
PMID:21873635
(PMID:11133832)		 Ensembl
RGD		 PMID:11133832 PMID:21873635 GO_REF:0000107, RGD:13792537 NCBI chr20:4,656,262...4,666,634
Ensembl chr20:4,656,263...4,666,901 		JBrowse link
G Tap2 transporter 2, ATP binding cassette subfamily B member involved_in
acts_upstream_of_or_within		 ISO
IDA		 (PMID:1538751), (PMID:8496691)
PMID:1758495		 RGD PMID:1538751 PMID:8496691 PMID:1758495 RGD:1299069 NCBI chr20:4,636,347...4,650,387
Ensembl chr20:4,636,357...4,650,407 		JBrowse link
G Tapbp TAP binding protein involved_in IEA GO_REF:0000002 InterPro GO_REF:0000002 NCBI chr20:4,956,937...4,966,191
Ensembl chr20:4,956,937...4,966,181 		JBrowse link
antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-dependent term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RT1-CE16 RT1 class I, locus CE16 involved_in ISO (PMID:8630735) RGD PMID:8630735 NCBI chr20:3,257,109...3,260,747
Ensembl chr20:3,257,123...3,279,563 		JBrowse link
G Tap2 transporter 2, ATP binding cassette subfamily B member acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:50291|PMID:1538753)
GO_REF:0000107		 RGD
Ensembl		 PMID:1538753 GO_REF:0000107 MGI:50291 NCBI chr20:4,636,347...4,650,387
Ensembl chr20:4,636,357...4,650,407 		JBrowse link
antigen processing and presentation of endogenous peptide antigen via MHC class I via ER pathway, TAP-independent term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07000137.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 1:1,307,185...1,308,310 JBrowse link
G AABR07000147.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G AABR07001348.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 1:39,668,472...39,670,153 JBrowse link
G H60al histocompatibility 60a like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:1,382,896...1,386,846 JBrowse link
G Hfe homeostatic iron regulator involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:41,413,451...41,421,502
Ensembl chr17:41,413,451...41,421,502 		JBrowse link
G Micb MHC class I polypeptide-related sequence B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:78,495,779...78,513,030
Ensembl chr 1:78,495,779...78,512,827 		JBrowse link
G Mill1 MHC I like leukocyte 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:78,372,798...78,398,932
Ensembl chr 1:78,372,802...78,398,930 		JBrowse link
G Raet1l retinoic acid early transcript 1L involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:1,979,433...1,984,410
Ensembl chr 1:1,979,443...1,984,410 		JBrowse link
G RT1-A RT1 class I, locus A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G RT1-A1 RT1 class Ia, locus A1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:4,905,309...4,914,593 JBrowse link
G RT1-A2 RT1 class Ia, locus A2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:4,870,939...4,910,183 JBrowse link
G RT1-CE1 RT1 class I, locus1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:3,555,779...3,559,487
Ensembl chr20:3,555,782...3,559,486 		JBrowse link
G RT1-CE11 RT1 class I, locus CE11 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:3,355,393...3,358,520
Ensembl chr20:3,350,937...3,380,362 		JBrowse link
G RT1-CE16 RT1 class I, locus CE16 involved_in ISO (PMID:22031944) RGD PMID:22031944 NCBI chr20:3,257,109...3,260,747
Ensembl chr20:3,257,123...3,279,563 		JBrowse link
G RT1-CE3 RT1 class I, locus CE3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:3,516,647...3,520,938
Ensembl chr20:2,623,953...2,692,081 		JBrowse link
G RT1-CE5 RT1 class I, locus CE5 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:3,403,418...3,479,476 JBrowse link
G RT1-CE7 RT1 class I, locus CE7 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:3,434,205...3,437,152 JBrowse link
G RT1-M2 RT1 class Ib, locus M2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:978,918...981,510
Ensembl chr20:978,935...981,723 		JBrowse link
G RT1-M3-1 RT1 class Ib, locus M3, gene 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:1,323,976...1,328,126
Ensembl chr20:1,287,521...1,328,117 		JBrowse link
G RT1-M5 RT1 class Ib, locus M5 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:1,546,496...1,548,948
Ensembl chr20:1,546,511...1,548,775 		JBrowse link
G RT1-M6-2 RT1 class I, locus M6, gene 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:1,583,267...1,587,099
Ensembl chr20:1,583,299...1,586,215 		JBrowse link
G RT1-N1 RT1 class Ib, locus N1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G RT1-N2 RT1 class Ib, locus N2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:2,641,157...2,645,439
Ensembl chr20:2,641,202...2,644,900 		JBrowse link
G RT1-N3 RT1 class Ib, locus N3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:2,659,132...2,665,536
Ensembl chr20:2,661,584...2,665,530 		JBrowse link
G RT1-O1l1 RT1 class Ib, locus O1 like 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:2,624,073...2,658,023
Ensembl chr20:2,623,953...2,692,081 		JBrowse link
G RT1-S3 RT1 class Ib, locus S3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:2,670,654...2,675,411
Ensembl chr20:2,670,709...2,675,411 		JBrowse link
G RT1-T24-1 RT1 class I, locus T24, gene 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:2,761,495...2,774,871
Ensembl chr20:2,718,279...2,776,154 		JBrowse link
G RT1-T24-3 RT1 class I, locus T24, gene 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:2,718,210...2,730,604
Ensembl chr20:2,718,279...2,776,154 		JBrowse link
G RT1-T24-4 RT1 class I, locus T24, gene 4 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:2,684,515...2,747,878
Ensembl chr20:2,684,515...2,692,511 		JBrowse link
antigen processing and presentation of endogenous peptide antigen via MHC class Ib term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AABR07000137.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 1:1,307,185...1,308,310 JBrowse link
G AABR07000147.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G AABR07001348.1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 Ensembl chr 1:39,668,472...39,670,153 JBrowse link
G H60al histocompatibility 60a like involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:1,382,896...1,386,846 JBrowse link
G Hfe homeostatic iron regulator involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr17:41,413,451...41,421,502
Ensembl chr17:41,413,451...41,421,502 		JBrowse link
G Micb MHC class I polypeptide-related sequence B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:78,495,779...78,513,030
Ensembl chr 1:78,495,779...78,512,827 		JBrowse link
G Mill1 MHC I like leukocyte 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:78,372,798...78,398,932
Ensembl chr 1:78,372,802...78,398,930 		JBrowse link
G Raet1l retinoic acid early transcript 1L involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 1:1,979,433...1,984,410
Ensembl chr 1:1,979,443...1,984,410 		JBrowse link
G RT1-A RT1 class I, locus A involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G RT1-A1 RT1 class Ia, locus A1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:4,905,309...4,914,593 JBrowse link
G RT1-A2 RT1 class Ia, locus A2 involved_in ISO
IBA		 (PMID:9754572)
PMID:21873635		 RGD PMID:9754572 PMID:21873635 RGD:13792537 NCBI chr20:4,870,939...4,910,183 JBrowse link
G RT1-CE1 RT1 class I, locus1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:3,555,779...3,559,487
Ensembl chr20:3,555,782...3,559,486 		JBrowse link
G RT1-CE11 RT1 class I, locus CE11 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:3,355,393...3,358,520
Ensembl chr20:3,350,937...3,380,362 		JBrowse link
G RT1-CE3 RT1 class I, locus CE3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:3,516,647...3,520,938
Ensembl chr20:2,623,953...2,692,081 		JBrowse link
G RT1-CE5 RT1 class I, locus CE5 involved_in ISO
IBA		 (PMID:28636952)
PMID:21873635		 RGD PMID:28636952 PMID:21873635 RGD:13792537 NCBI chr20:3,403,418...3,479,476 JBrowse link
G RT1-CE7 RT1 class I, locus CE7 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:3,434,205...3,437,152 JBrowse link
G RT1-M2 RT1 class Ib, locus M2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:978,918...981,510
Ensembl chr20:978,935...981,723 		JBrowse link
G RT1-M3-1 RT1 class Ib, locus M3, gene 1 involved_in
acts_upstream_of_or_within		 IBA
ISO		 PMID:21873635
(MGI:52901|PMID:8464890)
(PMID:7584149), (PMID:8805247)		 RGD PMID:7584149 PMID:8464890 PMID:8805247 PMID:21873635 MGI:52901, RGD:13792537 NCBI chr20:1,323,976...1,328,126
Ensembl chr20:1,287,521...1,328,117 		JBrowse link
G RT1-M5 RT1 class Ib, locus M5 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:1,546,496...1,548,948
Ensembl chr20:1,546,511...1,548,775 		JBrowse link
G RT1-M6-2 RT1 class I, locus M6, gene 2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:1,583,267...1,587,099
Ensembl chr20:1,583,299...1,586,215 		JBrowse link
G RT1-N1 RT1 class Ib, locus N1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G RT1-N2 RT1 class Ib, locus N2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:2,641,157...2,645,439
Ensembl chr20:2,641,202...2,644,900 		JBrowse link
G RT1-N3 RT1 class Ib, locus N3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:2,659,132...2,665,536
Ensembl chr20:2,661,584...2,665,530 		JBrowse link
G RT1-O1l1 RT1 class Ib, locus O1 like 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:2,624,073...2,658,023
Ensembl chr20:2,623,953...2,692,081 		JBrowse link
G RT1-S3 RT1 class Ib, locus S3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:2,670,654...2,675,411
Ensembl chr20:2,670,709...2,675,411 		JBrowse link
G RT1-T24-1 RT1 class I, locus T24, gene 1 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:2,761,495...2,774,871
Ensembl chr20:2,718,279...2,776,154 		JBrowse link
G RT1-T24-3 RT1 class I, locus T24, gene 3 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:2,718,210...2,730,604
Ensembl chr20:2,718,279...2,776,154 		JBrowse link
G RT1-T24-4 RT1 class I, locus T24, gene 4 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:2,684,515...2,747,878
Ensembl chr20:2,684,515...2,692,511 		JBrowse link
antigen processing and presentation of endogenous peptide antigen via MHC class Ib via ER pathway, TAP-dependent term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RT1-A2 RT1 class Ia, locus A2 acts_upstream_of_or_within ISO (MGI:50291|PMID:1538753) RGD PMID:1538753 MGI:50291 NCBI chr20:4,870,939...4,910,183 JBrowse link
G Tap2 transporter 2, ATP binding cassette subfamily B member involved_in
acts_upstream_of_or_within		 ISO
IEA		 (PMID:1538751)
GO_REF:0000107
(MGI:50291|PMID:1538753)		 RGD
Ensembl		 PMID:1538751 PMID:1538753 GO_REF:0000107 MGI:50291 NCBI chr20:4,636,347...4,650,387
Ensembl chr20:4,636,357...4,650,407 		JBrowse link
antigen processing and presentation of endogenous peptide antigen via MHC class II term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RT1-Da RT1 class II, locus Da involved_in ISO (PMID:15322540) RGD PMID:15322540 NCBI chr20:4,513,464...4,518,457
Ensembl chr20:4,512,911...4,518,455 		JBrowse link
G RT1-Db1 RT1 class II, locus Db1 involved_in ISO (PMID:15322540) RGD PMID:15322540 NCBI chr20:4,548,664...4,558,237
Ensembl chr20:4,548,666...4,558,258 		JBrowse link
antigen processing and presentation of exogenous peptide antigen term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mpeg1 macrophage expressed 1 involved_in ISS
ISO		 GO_REF:0000024
(MGI:7539255|PMID:35471730)		 UniProt
RGD		 PMID:35471730 GO_REF:0000024 MGI:7539255 NCBI chr 1:209,452,176...209,456,692
Ensembl chr 1:209,452,133...209,458,855 		JBrowse link
antigen processing and presentation of exogenous peptide antigen via MHC class I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clec4a C-type lectin domain family 4, member A involved_in ISS GO_REF:0000024 UniProt GO_REF:0000024 NCBI chr 4:156,340,439...156,434,212
Ensembl chr 4:156,414,688...156,432,402 		JBrowse link
G Clec4a3 C-type lectin domain family 4, member A3 involved_in ISO (PMID:20530286) RGD PMID:20530286 NCBI chr 4:156,214,030...156,224,818
Ensembl chr 4:156,214,718...156,224,817 		JBrowse link
G Fcer1g Fc epsilon receptor Ig involved_in
acts_upstream_of_or_within		 IBA
ISO		 PMID:21873635
MGI:2384004 (MGI:2664488|PMID:11911824)		 RGD PMID:11911824 PMID:21873635 MGI:2664488, RGD:13792537 NCBI chr13:83,649,447...83,654,248
Ensembl chr13:83,649,449...83,671,443 		JBrowse link
G Fcgr1a Fc gamma receptor 1A acts_upstream_of_or_within ISO MGI:2664927 (MGI:2664488|PMID:11911824) RGD PMID:11911824 MGI:2664488 NCBI chr 2:183,851,075...183,860,077
Ensembl chr 2:183,851,077...183,859,994 		JBrowse link
G Fcgr2a Fc gamma receptor 2A acts_upstream_of_or_within ISO MGI:1861924 (MGI:2664488|PMID:11911824) RGD PMID:11911824 MGI:2664488 NCBI chr13:83,280,782...83,297,535
Ensembl chr13:83,280,784...83,295,967 		JBrowse link
G Ifi30 IFI30, lysosomal thiol reductase involved_in ISS
ISO		 GO_REF:0000024
(MGI:5009354|PMID:20538950)		 UniProt
RGD		 PMID:20538950 GO_REF:0000024 MGI:5009354 NCBI chr16:18,675,590...18,679,655
Ensembl chr16:18,675,613...18,681,175 		JBrowse link
G Mfsd6 major facilitator superfamily domain containing 6 involved_in
acts_upstream_of_or_within		 IBA
ISO		 PMID:21873635
(MGI:3692789|PMID:17010536)		 RGD PMID:17010536 PMID:21873635 MGI:3692789, RGD:13792537 NCBI chr 9:48,773,171...48,858,471
Ensembl chr 9:48,773,414...48,858,465 		JBrowse link
G Mpeg1 macrophage expressed 1 involved_in ISO
ISS		 (MGI:7493537|PMID:37347855)
GO_REF:0000024		 RGD
UniProt		 PMID:37347855 GO_REF:0000024 MGI:7493537 NCBI chr 1:209,452,176...209,456,692
Ensembl chr 1:209,452,133...209,458,855 		JBrowse link
G RT1-CE16 RT1 class I, locus CE16 involved_in ISO (PMID:12138174), (PMID:7504010) RGD PMID:7504010 PMID:12138174 NCBI chr20:3,257,109...3,260,747
Ensembl chr20:3,257,123...3,279,563 		JBrowse link
antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tapbp TAP binding protein acts_upstream_of_or_within
involved_in		 ISO (MGI:1289739|PMID:9716645) RGD PMID:9716645 MGI:1289739 NCBI chr20:4,956,937...4,966,191
Ensembl chr20:4,956,937...4,966,181 		JBrowse link
antigen processing and presentation of exogenous peptide antigen via MHC class Ib term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RT1-A2 RT1 class Ia, locus A2 involved_in ISO (PMID:20195504), (PMID:30087334) RGD PMID:20195504 PMID:30087334 NCBI chr20:4,870,939...4,910,183 JBrowse link
G RT1-CE5 RT1 class I, locus CE5 involved_in ISO (PMID:23851683) RGD PMID:23851683 NCBI chr20:3,403,418...3,479,476 JBrowse link
G RT1-M3-1 RT1 class Ib, locus M3, gene 1 acts_upstream_of_or_within ISO (MGI:3700863|PMID:16461341) RGD PMID:16461341 MGI:3700863 NCBI chr20:1,323,976...1,328,126
Ensembl chr20:1,287,521...1,328,117 		JBrowse link
antigen processing and presentation of exogenous peptide antigen via MHC class II term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B2m beta-2 microglobulin involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:109,095,740...109,101,764
Ensembl chr 3:109,095,729...109,101,766 		JBrowse link
G Cd74 CD74 molecule acts_upstream_of_or_within ISO MGI:1927205 (MGI:52620|PMID:7679955), (MGI:79110|PMID:8598040) RGD PMID:7679955 PMID:8598040 MGI:52620 MGI:79110 NCBI chr18:54,256,757...54,266,003
Ensembl chr18:54,256,778...54,266,003 		JBrowse link
G Ctse cathepsin E involved_in ISO
IDA
IBA		 (PMID:8765029)
PMID:8491674
(MGI:2158899|PMID:11719510)
PMID:21873635		 RGD PMID:8765029 PMID:11719510 PMID:8491674 PMID:21873635 MGI:2158899, RGD:8553254, RGD:13792537 NCBI chr13:43,091,954...43,114,509
Ensembl chr13:43,092,128...43,114,502 		JBrowse link
G Ctss cathepsin S involved_in ISO
IEA
ISS		 (PMID:30612035)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:30612035 GO_REF:0000024 GO_REF:0000107 NCBI chr 2:183,086,437...183,114,483
Ensembl chr 2:183,086,437...183,114,483 		JBrowse link
G Fcer1g Fc epsilon receptor Ig involved_in
acts_upstream_of_or_within		 IBA
ISO		 PMID:21873635
MGI:1857165 (MGI:2687086|PMID:14643301)		 RGD PMID:14643301 PMID:21873635 MGI:2687086, RGD:13792537 NCBI chr13:83,649,447...83,654,248
Ensembl chr13:83,649,449...83,671,443 		JBrowse link
G Fcgr2b Fc gamma receptor 2B acts_upstream_of_or_within ISO MGI:1857166 (MGI:2687086|PMID:14643301) RGD PMID:14643301 MGI:2687086 NCBI chr13:83,191,253...83,207,778
Ensembl chr13:83,193,163...83,207,778 		JBrowse link
G Ifi30 IFI30, lysosomal thiol reductase acts_upstream_of_or_within ISO MGI:2178559 (MGI:2153425|PMID:11701933) RGD PMID:11701933 MGI:2153425 NCBI chr16:18,675,590...18,679,655
Ensembl chr16:18,675,613...18,681,175 		JBrowse link
G Ighe immunoglobulin heavy constant epsilon involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G Lgmn legumain involved_in ISS
ISO		 GO_REF:0000024
(PMID:9872320)		 UniProt
RGD		 PMID:9872320 GO_REF:0000024 NCBI chr 6:121,544,048...121,582,495
Ensembl chr 6:121,544,053...121,582,480 		JBrowse link
G Pikfyve phosphoinositide kinase, FYVE-type zinc finger containing involved_in ISO (PMID:30612035) RGD PMID:30612035 NCBI chr 9:66,563,747...66,657,873
Ensembl chr 9:66,563,727...66,657,868 		JBrowse link
G RT1-B RT1 class II, locus B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G RT1-Ba RT1 class II, locus Ba involved_in
acts_upstream_of_or_within		 IEA
IBA
ISO		 GO_REF:0000107
PMID:21873635
(MGI:1913231|PMID:11069069), (MGI:2153656|PMID:11714799), (MGI:2671681|PMID:9492004), (MGI:3033881|PMID:9432982), (MGI:3033882|PMID:11027433), (MGI:52620|PMID:7679955), (MGI:79110|PMID:8598040), (MGI:79111|PMID:8598041)		 Ensembl
RGD		 PMID:7679955 PMID:8598040 PMID:8598041 PMID:9432982 PMID:9492004 More... GO_REF:0000107 MGI:1913231 MGI:2153656 MGI:2671681 MGI:3033881 MGI:3033882 MGI:52620 MGI:79110 MGI:79111, RGD:13792537 NCBI chr20:4,575,134...4,579,727
Ensembl chr20:4,575,134...4,579,744 		JBrowse link
G RT1-Bb RT1 class II, locus Bb involved_in
acts_upstream_of_or_within		 ISO
IBA		 (PMID:32341563)
PMID:21873635
(MGI:1913231|PMID:11069069), (MGI:2153656|PMID:11714799), (MGI:2671681|PMID:9492004), (MGI:3033881|PMID:9432982), (MGI:3033882|PMID:11027433), (MGI:52620|PMID:7679955), (MGI:79110|PMID:8598040), (MGI:79111|PMID:8598041)		 RGD PMID:7679955 PMID:8598040 PMID:8598041 PMID:9432982 PMID:9492004 More... MGI:1913231 MGI:2153656 MGI:2671681 MGI:3033881 MGI:3033882 MGI:52620 MGI:79110 MGI:79111, RGD:13792537 NCBI chr20:4,596,558...4,602,201
Ensembl chr20:4,596,559...4,607,597 		JBrowse link
G RT1-Da RT1 class II, locus Da involved_in
acts_upstream_of_or_within		 ISO
IBA		 (PMID:15265931)
PMID:21873635
(MGI:2153656|PMID:11714799), (MGI:3033882|PMID:11027433)		 RGD PMID:11027433 PMID:11714799 PMID:15265931 PMID:21873635 MGI:2153656 MGI:3033882, RGD:13792537 NCBI chr20:4,513,464...4,518,457
Ensembl chr20:4,512,911...4,518,455 		JBrowse link
G RT1-Db1 RT1 class II, locus Db1 involved_in
acts_upstream_of_or_within		 ISO
IBA		 (PMID:15265931), (PMID:32341563)
PMID:21873635
(MGI:2153656|PMID:11714799), (MGI:3033882|PMID:11027433)		 RGD PMID:11027433 PMID:11714799 PMID:15265931 PMID:32341563 PMID:21873635 MGI:2153656 MGI:3033882, RGD:13792537 NCBI chr20:4,548,664...4,558,237
Ensembl chr20:4,548,666...4,558,258 		JBrowse link
G RT1-Db2 RT1 class II, locus Db2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:4,520,723...4,539,724
Ensembl chr20:4,520,713...4,539,705 		JBrowse link
G RT1-DMa RT1 class II, locus DMa acts_upstream_of_or_within ISO MGI:1861933|MGI:2384509|MGI:2652160 (MGI:2153656|PMID:11714799), (MGI:3033882|PMID:11027433), (MGI:79110|PMID:8598040), (MGI:79111|PMID:8598041) RGD PMID:8598040 PMID:8598041 PMID:11027433 PMID:11714799 MGI:2153656 MGI:3033882 MGI:79110 MGI:79111 NCBI chr20:4,707,028...4,710,432
Ensembl chr20:4,707,028...4,710,432 		JBrowse link
G RT1-DMb RT1 class II, locus DMb involved_in
acts_upstream_of_or_within		 ISO (PMID:8139689)
(MGI:3033882|PMID:11027433)		 RGD PMID:8139689 PMID:11027433 MGI:3033882 NCBI chr20:4,693,102...4,700,340
Ensembl chr20:4,693,103...4,700,340 		JBrowse link
G RT1-DOa RT1 class II, locus DOa acts_upstream_of_or_within
involved_in		 ISO
IBA		 MGI:2675254 (MGI:2671681|PMID:9492004)
PMID:21873635		 RGD PMID:9492004 PMID:21873635 MGI:2671681, RGD:13792537 NCBI chr20:4,753,587...4,756,590
Ensembl chr20:4,753,598...4,756,577 		JBrowse link
G RT1-DOb RT1 class II, locus DOb involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:4,619,418...4,625,627
Ensembl chr20:4,619,816...4,625,667 		JBrowse link
G RT1-Ha RT1 class II, locus Ha involved_in ISO
IBA		 (PMID:20356827)
PMID:21873635		 RGD PMID:20356827 PMID:21873635 RGD:13792537 NCBI chr20:4,760,631...4,770,662
Ensembl chr20:4,760,118...4,770,244 		JBrowse link
G RT1-Hb-ps1 RT1 class II, locus Hb, pseudogene 1 involved_in ISO (PMID:20356827), (PMID:32341563) RGD PMID:20356827 PMID:32341563 NCBI chr20:4,775,598...4,779,590
Ensembl chr20:4,774,650...4,780,618 		JBrowse link
G Traf6 TNF receptor associated factor 6 acts_upstream_of_or_within
involved_in		 ISO
IEA		 MGI:2678775 (MGI:2677080|PMID:14499111)
GO_REF:0000107		 RGD
Ensembl		 PMID:14499111 GO_REF:0000107 MGI:2677080 NCBI chr 3:87,963,517...87,988,316
Ensembl chr 3:87,963,514...87,983,507 		JBrowse link
G Unc93b1 unc-93 homolog B1, TLR signaling regulator acts_upstream_of_or_within ISO MGI:3619211 (MGI:3615690|PMID:16415873) RGD PMID:16415873 MGI:3615690 NCBI chr 1:201,167,388...201,178,343
Ensembl chr 1:201,152,693...201,178,338 		JBrowse link
antigen processing and presentation of exogenous protein antigen via MHC class Ib, TAP-dependent term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B2m beta-2 microglobulin acts_upstream_of_or_within ISO (MGI:3611636|PMID:16299293) RGD PMID:16299293 MGI:3611636 NCBI chr 3:109,095,740...109,101,764
Ensembl chr 3:109,095,729...109,101,766 		JBrowse link
G RT1-M3-1 RT1 class Ib, locus M3, gene 1 acts_upstream_of_or_within ISO (MGI:3611636|PMID:16299293) RGD PMID:16299293 MGI:3611636 NCBI chr20:1,323,976...1,328,126
Ensembl chr20:1,287,521...1,328,117 		JBrowse link
G Tap2 transporter 2, ATP binding cassette subfamily B member acts_upstream_of_or_within
involved_in		 ISO
IEA		 (MGI:3611636|PMID:16299293)
GO_REF:0000107		 RGD
Ensembl		 PMID:16299293 GO_REF:0000107 MGI:3611636 NCBI chr20:4,636,347...4,650,387
Ensembl chr20:4,636,357...4,650,407 		JBrowse link
antigen processing and presentation of peptide antigen via MHC class I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Abcb9 ATP binding cassette subfamily B member 9 NOT|involved_in ISO (PMID:17977821) RGD PMID:17977821 NCBI chr12:32,499,213...32,531,932
Ensembl chr12:32,499,225...32,531,931 		JBrowse link
G Mr1 major histocompatibility complex, class I-related involved_in IEA GO_REF:0000043 UniProt GO_REF:0000043 NCBI chr13:67,298,362...67,317,985
Ensembl chr13:67,299,585...67,317,970 		JBrowse link
antigen processing and presentation of peptide antigen via MHC class II term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Marchf1 membrane associated ring-CH-type finger 1 involved_in IBA
ISO		 PMID:21873635
(MGI:3703462|PMID:17255932), (MGI:4430994|PMID:19917682)
(PMID:18389477)		 RGD PMID:17255932 PMID:18389477 PMID:19917682 PMID:21873635 MGI:3703462 MGI:4430994, RGD:13792537 NCBI chr16:23,255,551...24,114,290
Ensembl chr16:23,258,799...24,114,277 		JBrowse link
G Marchf8 membrane associated ring-CH-type finger 8 involved_in IBA
ISO		 PMID:21873635
(MGI:3785681|PMID:16785530)		 RGD PMID:16785530 PMID:21873635 MGI:3785681, RGD:13792537 NCBI chr 4:149,415,642...149,530,771
Ensembl chr 4:149,416,071...149,530,770 		JBrowse link
negative regulation of antigen processing and presentation of endogenous peptide antigen via MHC class I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hfe homeostatic iron regulator involved_in ISO UniProtKB:P04439 (PMID:24643698) RGD PMID:24643698 NCBI chr17:41,413,451...41,421,502
Ensembl chr17:41,413,451...41,421,502 		JBrowse link
negative regulation of antigen processing and presentation of peptide antigen via MHC class I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tapbpl TAP binding protein-like involved_in ISO (PMID:23401559) RGD PMID:23401559 NCBI chr 4:158,021,454...158,028,905 JBrowse link
negative regulation of antigen processing and presentation of peptide antigen via MHC class II term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G RT1-DOa RT1 class II, locus DOa involved_in ISO (PMID:22733780) RGD PMID:22733780 NCBI chr20:4,753,587...4,756,590
Ensembl chr20:4,753,598...4,756,577 		JBrowse link
G RT1-DOb RT1 class II, locus DOb involved_in ISO (PMID:22733780) RGD PMID:22733780 NCBI chr20:4,619,418...4,625,627
Ensembl chr20:4,619,816...4,625,667 		JBrowse link
peptide antigen assembly with MHC class I protein complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Calr calreticulin involved_in ISO (MGI:3813437|PMID:11825569) RGD PMID:11825569 MGI:3813437 NCBI chr19:23,308,525...23,313,420
Ensembl chr19:23,308,351...23,313,414 		JBrowse link
G Pdia3 protein disulfide isomerase family A, member 3 involved_in ISO
IEA		 (PMID:17603487)
GO_REF:0000107		 RGD
Ensembl		 PMID:17603487 GO_REF:0000107 NCBI chr 3:108,388,189...108,412,013
Ensembl chr 3:108,388,245...108,413,236 		JBrowse link
G Tapbp TAP binding protein involved_in ISO
IBA		 (PMID:10636848), (PMID:17603487)
PMID:21873635		 RGD PMID:10636848 PMID:17603487 PMID:21873635 RGD:13792537 NCBI chr20:4,956,937...4,966,191
Ensembl chr20:4,956,937...4,966,181 		JBrowse link
G Tapbpl TAP binding protein-like involved_in ISO (PMID:26869717) RGD PMID:26869717 NCBI chr 4:158,021,454...158,028,905 JBrowse link
peptide antigen assembly with MHC class II protein complex term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G B2m beta-2 microglobulin involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr 3:109,095,740...109,101,764
Ensembl chr 3:109,095,729...109,101,766 		JBrowse link
G Ighe immunoglobulin heavy constant epsilon involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G RT1-B RT1 class II, locus B involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537
G RT1-Ba RT1 class II, locus Ba involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:4,575,134...4,579,727
Ensembl chr20:4,575,134...4,579,744 		JBrowse link
G RT1-Bb RT1 class II, locus Bb involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:4,596,558...4,602,201
Ensembl chr20:4,596,559...4,607,597 		JBrowse link
G RT1-Da RT1 class II, locus Da involved_in ISO
IBA		 (PMID:1448172), (PMID:22733780), (PMID:7606781)
PMID:21873635		 RGD PMID:1448172 PMID:7606781 PMID:22733780 PMID:21873635 RGD:13792537 NCBI chr20:4,513,464...4,518,457
Ensembl chr20:4,512,911...4,518,455 		JBrowse link
G RT1-Db1 RT1 class II, locus Db1 involved_in ISO
IBA		 (PMID:1448172), (PMID:22733780), (PMID:7606781)
PMID:21873635		 RGD PMID:1448172 PMID:7606781 PMID:22733780 PMID:21873635 RGD:13792537 NCBI chr20:4,548,664...4,558,237
Ensembl chr20:4,548,666...4,558,258 		JBrowse link
G RT1-Db2 RT1 class II, locus Db2 involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:4,520,723...4,539,724
Ensembl chr20:4,520,713...4,539,705 		JBrowse link
G RT1-DMa RT1 class II, locus DMa involved_in ISO (PMID:22733780), (PMID:23260142), (PMID:7606781), (PMID:9075930) RGD PMID:7606781 PMID:9075930 PMID:22733780 PMID:23260142 NCBI chr20:4,707,028...4,710,432
Ensembl chr20:4,707,028...4,710,432 		JBrowse link
G RT1-DMb RT1 class II, locus DMb involved_in ISO (PMID:22733780), (PMID:23260142), (PMID:7606781), (PMID:9075930) RGD PMID:7606781 PMID:9075930 PMID:22733780 PMID:23260142 NCBI chr20:4,693,102...4,700,340
Ensembl chr20:4,693,103...4,700,340 		JBrowse link
G RT1-DOa RT1 class II, locus DOa involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:4,753,587...4,756,590
Ensembl chr20:4,753,598...4,756,577 		JBrowse link
G RT1-DOb RT1 class II, locus DOb involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:4,619,418...4,625,627
Ensembl chr20:4,619,816...4,625,667 		JBrowse link
G RT1-Ha RT1 class II, locus Ha involved_in IBA PMID:21873635 GO_Central PMID:21873635 RGD:13792537 NCBI chr20:4,760,631...4,770,662
Ensembl chr20:4,760,118...4,770,244 		JBrowse link
peptide antigen stabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tapbp TAP binding protein involved_in ISO (MGI:3687922|PMID:12594855) RGD PMID:12594855 MGI:3687922 NCBI chr20:4,956,937...4,966,191
Ensembl chr20:4,956,937...4,966,181 		JBrowse link
peptide antigen transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tap1 transporter 1, ATP binding cassette subfamily B member TAS RGD PMID:14622282 RGD:1300480 NCBI chr20:4,656,262...4,666,634
Ensembl chr20:4,656,263...4,666,901 		JBrowse link
G Tap2 transporter 2, ATP binding cassette subfamily B member involved_in TAS
IEA
ISO		 GO_REF:0000107
(PMID:1538751), (PMID:8496691)		 Ensembl
RGD		 PMID:1538751 PMID:8496691 PMID:14622282 GO_REF:0000107, RGD:1300480 NCBI chr20:4,636,347...4,650,387
Ensembl chr20:4,636,357...4,650,407 		JBrowse link
positive regulation of antigen processing and presentation of peptide antigen via MHC class I term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tap2 transporter 2, ATP binding cassette subfamily B member IMP RGD PMID:1758495 RGD:1299069 NCBI chr20:4,636,347...4,650,387
Ensembl chr20:4,636,357...4,650,407 		JBrowse link
positive regulation of antigen processing and presentation of peptide antigen via MHC class II term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pycard PYD and CARD domain containing involved_in ISO (MGI:5291858|PMID:21892172) RGD PMID:21892172 MGI:5291858 NCBI chr 1:182,601,657...182,603,013
Ensembl chr 1:182,601,174...182,602,955 		JBrowse link
G Trem2 triggering receptor expressed on myeloid cells 2 involved_in ISO (PMID:11602640) RGD PMID:11602640 NCBI chr 9:12,647,605...12,654,190
Ensembl chr 9:12,647,259...12,654,170 		JBrowse link
Term paths to the root