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ONTOLOGY REPORT - ANNOTATIONS

Term:vesicle transport along microtubule
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Accession:GO:0047496 term browser browse the term
Definition:The directed movement of a vesicle along a microtubule, mediated by motor proteins. This process begins with the attachment of a vesicle to a microtubule, and ends when the vesicle reaches its final destination.
Synonyms:exact_synonym: microtubule-based vesicle localization

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vesicle transport along microtubule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bicdl1 BICD family like cargo adaptor 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624747:13,539,268...13,646,414
Ensembl chrNW_004624747:13,540,530...13,646,381 		JBrowse link
G Bicdl2 BICD family like cargo adaptor 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624824:772,466...779,707
Ensembl chrNW_004624824:772,471...779,192 		JBrowse link
G Cln3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in ISO (PMID:22261744) UniProt PMID:22261744 NCBI chrNW_004624782:12,995,277...13,004,980
Ensembl chrNW_004624782:12,995,277...13,005,087 		JBrowse link
G Dync1i1 dynein cytoplasmic 1 intermediate chain 1 involved_in ISO (PMID:24561039)
PMID:14985359		 UniProt
HGNC-UCL		 PMID:14985359 PMID:24561039 RGD:8553555 NCBI chrNW_004624813:2,490,745...2,826,230
Ensembl chrNW_004624813:2,490,706...2,825,412 		JBrowse link
G Htt huntingtin involved_in
acts_upstream_of_or_within		 ISO (PMID:20515468)
(PMID:15242649)		 UniProt
MGI		 PMID:15242649 PMID:20515468 NCBI chrNW_004624755:24,602,955...24,729,584
Ensembl chrNW_004624755:24,603,490...24,729,333 		JBrowse link
G Kif13a kinesin family member 13A involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624756:8,667,592...8,865,032
Ensembl chrNW_004624756:8,667,676...8,863,427 		JBrowse link
G Kif13b kinesin family member 13B involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624758:23,651,628...23,809,233
Ensembl chrNW_004624758:23,653,999...23,809,156 		JBrowse link
G Kif1b kinesin family member 1B involved_in IEA UniProt GO_REF:0000117 NCBI chrNW_004624818:2,282,999...2,428,586
Ensembl chrNW_004624818:2,282,999...2,428,563 		JBrowse link
G Kif5b kinesin family member 5B involved_in
acts_upstream_of_or_within		 ISO PMID:14985359
(PMID:17360972)
(PMID:28426968)		 HGNC-UCL
MGI
ARUK-UCL		 PMID:14985359 PMID:17360972 PMID:28426968 RGD:8553555 NCBI chrNW_004624805:4,464,538...4,514,784
Ensembl chrNW_004624805:4,465,235...4,514,870 		JBrowse link
G Map2k1 mitogen-activated protein kinase kinase 1 ISO positive regulation of bidirectional melanosome transport along microtubules RGD PMID:15753041 RGD:2293208 NCBI chrNW_004624781:6,222,365...6,285,398
Ensembl chrNW_004624781:6,222,365...6,285,531 		JBrowse link
G Nde1 nudE neurodevelopment protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16107726) TreeGrafter
MGI		 PMID:16107726 GO_REF:0000118 NCBI chrNW_004624782:236,715...284,200
Ensembl chrNW_004624782:236,735...268,516 		JBrowse link
G Ndel1 nudE neurodevelopment protein 1 like 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:16107726) MGI
TreeGrafter		 PMID:16107726 GO_REF:0000118 NCBI chrNW_004624786:10,981,963...11,039,504
Ensembl chrNW_004624786:11,000,615...11,034,689 		JBrowse link
G Pafah1b1 platelet activating factor acetylhydrolase 1b regulatory subunit 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16107726) TreeGrafter
MGI		 PMID:16107726 GO_REF:0000118 NCBI chrNW_004624786:5,223,890...5,306,033
Ensembl chrNW_004624786:5,224,982...5,302,436 		JBrowse link
G Prkcz protein kinase C zeta ISO Slc10a1/Ntcp-containing early endosomes RGD PMID:16734659 RGD:1642664 NCBI chrNW_004624818:7,758,192...7,846,950
Ensembl chrNW_004624818:7,759,770...7,847,208 		JBrowse link
G Rab1a RAB1A, member RAS oncogene family involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624762:8,420,336...8,448,478
Ensembl chrNW_004624762:8,420,305...8,449,647 		JBrowse link
G Rasgrp1 RAS guanyl releasing protein 1 acts_upstream_of_or_within
involved_in		 ISO
IEA		 (PMID:17190838) MGI
Ensembl		 PMID:17190838 GO_REF:0000107 NCBI chrNW_004624804:5,691,011...5,763,314
Ensembl chrNW_004624804:5,690,400...5,763,288 		JBrowse link
G Spg11 SPG11 vesicle trafficking associated, spatacsin acts_upstream_of_or_within ISO (PMID:37871017) MGI PMID:37871017 NCBI chrNW_004624804:11,569,024...11,672,037
Ensembl chrNW_004624804:11,569,150...11,670,373 		JBrowse link
G Trak1 trafficking kinesin protein 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624730:77,330,449...77,470,156
Ensembl chrNW_004624730:77,331,992...77,399,741 		JBrowse link
G Trak2 trafficking kinesin protein 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624899:275,291...335,555
Ensembl chrNW_004624899:300,096...332,392 		JBrowse link
G Vamp7 vesicle associated membrane protein 7 involved_in ISO PMID:22705394 UniProt PMID:22705394 RGD:10047362 NCBI chrNW_004624980:40,937...94,547
Ensembl chrNW_004624980:40,843...94,528 		JBrowse link
anterograde neuronal dense core vesicle transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kif1a kinesin family member 1A involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chrNW_004624847:4,961,552...5,035,125
Ensembl chrNW_004624847:4,961,552...5,035,061 		JBrowse link
G Kif1b kinesin family member 1B involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chrNW_004624818:2,282,999...2,428,586
Ensembl chrNW_004624818:2,282,999...2,428,563 		JBrowse link
G Kif1c kinesin family member 1C involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chrNW_004624786:8,845,352...8,868,681
Ensembl chrNW_004624786:8,845,033...8,869,577 		JBrowse link
G Sybu syntabulin ISO RGD PMID:17611281 RGD:13217407 NCBI chrNW_004624763:8,657,276...8,742,161
Ensembl chrNW_004624763:8,657,285...8,766,586 		JBrowse link
anterograde synaptic vesicle transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ap3b1 adaptor related protein complex 3 subunit beta 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624869:2,459,370...2,741,529
Ensembl chrNW_004624869:2,459,947...2,741,328 		JBrowse link
G Ap3b2 adaptor related protein complex 3 subunit beta 2 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624768:18,476,562...18,507,933
Ensembl chrNW_004624768:18,476,447...18,507,998 		JBrowse link
G Ap3d1 adaptor related protein complex 3 subunit delta 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624828:6,710,081...6,750,315
Ensembl chrNW_004624828:6,710,025...6,749,434 		JBrowse link
G Ap3m1 adaptor related protein complex 3 subunit mu 1 involved_in ISO (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chrNW_004624754:7,591,811...7,612,695
Ensembl chrNW_004624754:7,592,155...7,612,696 		JBrowse link
G Ap3m2 adaptor related protein complex 3 subunit mu 2 involved_in ISO (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chrNW_004624780:1,054,796...1,091,688
Ensembl chrNW_004624780:1,068,498...1,086,551 		JBrowse link
G Ap3s1 adaptor related protein complex 3 subunit sigma 1 involved_in ISO (MGI:5437407|PMID:21998198)
(PMID:21998198)		 UniProt PMID:21998198 MGI:5437407 NCBI chrNW_004624733:5,979,644...6,045,777
Ensembl chrNW_004624733:5,979,734...6,045,721 		JBrowse link
G Bloc1s1 biogenesis of lysosomal organelles complex 1 subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624802:12,299,866...12,304,295
Ensembl chrNW_004624802:12,290,688...12,304,712 		JBrowse link
G Bloc1s2 biogenesis of lysosomal organelles complex 1 subunit 2 involved_in ISO (MGI:5437407|PMID:21998198)
(PMID:21998198)		 UniProt PMID:21998198 MGI:5437407 NCBI chrNW_004624737:12,095,175...12,101,595
Ensembl chrNW_004624737:12,094,309...12,102,030 		JBrowse link
G Bloc1s4 biogenesis of lysosomal organelles complex 1 subunit 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624755:23,031,649...23,033,282 JBrowse link
G Bloc1s5 biogenesis of lysosomal organelles complex 1 subunit 5 involved_in ISO (PMID:21998198)
(MGI:5437407|PMID:21998198)		 UniProt PMID:21998198 MGI:5437407 NCBI chrNW_004624756:17,595,404...17,628,972
Ensembl chrNW_004624756:17,595,470...17,631,433 		JBrowse link
G Bloc1s6 biogenesis of lysosomal organelles complex 1 subunit 6 involved_in ISO (PMID:21998198)
(MGI:5437407|PMID:21998198)		 UniProt PMID:21998198 MGI:5437407 NCBI chrNW_004624731:13,775,414...13,789,380
Ensembl chrNW_004624731:13,777,656...13,785,366 		JBrowse link
G Dtnbp1 dystrobrevin binding protein 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624756:10,810,368...10,932,801
Ensembl chrNW_004624756:10,810,413...10,942,034 		JBrowse link
G Kif1a kinesin family member 1A involved_in ISO (PMID:7539720) SynGO PMID:7539720 NCBI chrNW_004624847:4,961,552...5,035,125
Ensembl chrNW_004624847:4,961,552...5,035,061 		JBrowse link
G Kif1b kinesin family member 1B involved_in ISO (PMID:11389829) UniProt PMID:11389829 NCBI chrNW_004624818:2,282,999...2,428,586
Ensembl chrNW_004624818:2,282,999...2,428,563 		JBrowse link
G Madd MAP kinase activating death domain involved_in ISO (PMID:18849981) SynGO PMID:18849981 NCBI chrNW_004624767:1,421,603...1,459,738
Ensembl chrNW_004624767:1,421,603...1,459,507 		JBrowse link
G Snapin SNAP associated protein involved_in IEA Ensembl GO_REF:0000107 NCBI chrNW_004624885:3,490,321...3,491,963
Ensembl chrNW_004624885:3,490,321...3,491,946 		JBrowse link
G Trim46 tripartite motif containing 46 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:26671463) TreeGrafter
MGI		 PMID:26671463 GO_REF:0000118 NCBI chrNW_004624885:2,344,250...2,354,390
Ensembl chrNW_004624885:2,343,991...2,354,288 		JBrowse link
negative regulation of anterograde synaptic vesicle transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnih2 cornichon family AMPA receptor auxiliary protein 2 involved_in ISO PMID:24094107 UniProt PMID:24094107 RGD:10400859 NCBI chrNW_004624767:20,084,526...20,090,225
Ensembl chrNW_004624767:20,084,501...20,090,209 		JBrowse link
plus-end-directed vesicle transport along microtubule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fyco1 FYVE and coiled-coil domain autophagy adaptor 1 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624730:74,923,072...74,982,882
Ensembl chrNW_004624730:74,923,027...74,982,990 		JBrowse link
G Kif13a kinesin family member 13A involved_in ISO (MGI:5142383|PMID:11106728)
(PMID:11106728)		 UniProt PMID:11106728 MGI:5142383 NCBI chrNW_004624756:8,667,592...8,865,032
Ensembl chrNW_004624756:8,667,676...8,863,427 		JBrowse link
G Kif5b kinesin family member 5B acts_upstream_of_or_within ISO (PMID:17360972) MGI PMID:17360972 NCBI chrNW_004624805:4,464,538...4,514,784
Ensembl chrNW_004624805:4,465,235...4,514,870 		JBrowse link
positive regulation of anterograde dense core granule transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Map2 microtubule associated protein 2 involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chrNW_004624765:6,476,544...6,758,959
Ensembl chrNW_004624765:6,476,346...6,546,116 		JBrowse link
G Mecp2 methyl-CpG binding protein 2 ISO RGD PMID:22127389 RGD:12790715 NCBI chrNW_004624946:620,581...685,339
Ensembl chrNW_004624946:628,284...685,246 		JBrowse link
G Trim46 tripartite motif containing 46 involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chrNW_004624885:2,344,250...2,354,390
Ensembl chrNW_004624885:2,343,991...2,354,288 		JBrowse link
positive regulation of anterograde synaptic vesicle transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Borcs5 BLOC-1 related complex subunit 5 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624752:25,418,206...25,504,658
Ensembl chrNW_004624752:25,382,796...25,504,989 		JBrowse link
G Map2 microtubule associated protein 2 involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chrNW_004624765:6,476,544...6,758,959
Ensembl chrNW_004624765:6,476,346...6,546,116 		JBrowse link
positive regulation of retrograde dense core granule transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mecp2 methyl-CpG binding protein 2 ISO RGD PMID:22127389 RGD:12790715 NCBI chrNW_004624946:620,581...685,339
Ensembl chrNW_004624946:628,284...685,246 		JBrowse link
positive regulation of vesicle transport along microtubule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Stk11 serine/threonine kinase 11 involved_in IEA TreeGrafter GO_REF:0000118 NCBI chrNW_004624828:7,444,339...7,466,926
Ensembl chrNW_004624828:7,445,069...7,467,298 		JBrowse link
retrograde neuronal dense core vesicle transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Kif1a kinesin family member 1A involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chrNW_004624847:4,961,552...5,035,125
Ensembl chrNW_004624847:4,961,552...5,035,061 		JBrowse link
G Kif1b kinesin family member 1B involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chrNW_004624818:2,282,999...2,428,586
Ensembl chrNW_004624818:2,282,999...2,428,563 		JBrowse link
G Kif1c kinesin family member 1C involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chrNW_004624786:8,845,352...8,868,681
Ensembl chrNW_004624786:8,845,033...8,869,577 		JBrowse link
G Kif5a kinesin family member 5A involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chrNW_004624802:10,375,132...10,409,575
Ensembl chrNW_004624802:10,375,774...10,409,566 		JBrowse link
G Kif5b kinesin family member 5B involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chrNW_004624805:4,464,538...4,514,784
Ensembl chrNW_004624805:4,465,235...4,514,870 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 15258
    localization 5019
      organelle localization 596
        establishment of organelle localization 451
          organelle transport along microtubule 80
            vesicle transport along microtubule 45
              anterograde neuronal dense core vesicle transport + 7
              minus-end-directed vesicle transport along microtubule 0
              negative regulation of vesicle transport along microtubule + 1
              plus-end-directed vesicle transport along microtubule + 3
              positive regulation of vesicle transport along microtubule + 5
              regulation of vesicle transport along microtubule + 6
              retrograde neuronal dense core vesicle transport + 6
              synaptic vesicle transport along microtubule + 20
Path 2
Term Annotations click to browse term
  biological_process 15258
    cellular process 14889
      cellular localization 3332
        establishment of localization in cell 1953
          intracellular transport 1253
            cytoskeleton-dependent intracellular transport 194
              transport along microtubule 169
                organelle transport along microtubule 80
                  vesicle transport along microtubule 45
                    anterograde neuronal dense core vesicle transport + 7
                    minus-end-directed vesicle transport along microtubule 0
                    negative regulation of vesicle transport along microtubule + 1
                    plus-end-directed vesicle transport along microtubule + 3
                    positive regulation of vesicle transport along microtubule + 5
                    regulation of vesicle transport along microtubule + 6
                    retrograde neuronal dense core vesicle transport + 6
                    synaptic vesicle transport along microtubule + 20
paths to the root