Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)

ONTOLOGY REPORT - ANNOTATIONS

Term:vesicle transport along microtubule
go back to main search page
Accession:GO:0047496 term browser browse the term
Definition:The directed movement of a vesicle along a microtubule, mediated by motor proteins. This process begins with the attachment of a vesicle to a microtubule, and ends when the vesicle reaches its final destination.
Synonyms:exact_synonym: microtubule-based vesicle localization


show annotations for term's descendants           Sort by:
vesicle transport along microtubule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CLN3 CLN3 lysosomal/endosomal transmembrane protein, battenin involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:18,252,543...18,266,033
Ensembl chr 6:18,254,139...18,266,033 		JBrowse link
G DYNC1I1 dynein cytoplasmic 1 intermediate chain 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr14:20,967,936...21,279,044
Ensembl chr14:20,968,011...21,278,363 		JBrowse link
G HAP1 huntingtin associated protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15242649) Ensembl
MGI		 PMID:15242649 GO_REF:0000107 NCBI chr 9:21,065,770...21,074,462
Ensembl chr 9:21,065,846...21,072,991 		JBrowse link
G HTT huntingtin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:15242649) Ensembl
MGI		 PMID:15242649 GO_REF:0000107 NCBI chr 3:61,076,934...61,221,462
Ensembl chr 3:61,079,904...61,330,290 		JBrowse link
G KIF5B kinesin family member 5B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17360972) Ensembl
MGI		 PMID:17360972 GO_REF:0000107 NCBI chr 2:14,835,906...14,880,896
Ensembl chr 2:14,835,901...14,878,251 		JBrowse link
G MAP2K1 mitogen-activated protein kinase kinase 1 ISO positive regulation of bidirectional melanosome transport along microtubules RGD PMID:15753041 RGD:2293208 NCBI chr30:30,683,192...30,760,479
Ensembl chr30:30,683,107...30,760,479 		JBrowse link
G NDE1 nudE neurodevelopment protein 1 acts_upstream_of_or_within ISO (PMID:16107726) MGI PMID:16107726 NCBI chr 6:28,143,244...28,186,069
Ensembl chr 6:28,143,244...28,186,051 		JBrowse link
G NDEL1 nudE neurodevelopment protein 1 like 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16107726) Ensembl
MGI		 PMID:16107726 GO_REF:0000107 NCBI chr 5:33,187,614...33,244,483
Ensembl chr 5:33,204,452...33,266,052 		JBrowse link
G PAFAH1B1 platelet activating factor acetylhydrolase 1b regulatory subunit 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:16107726) Ensembl
MGI		 PMID:16107726 GO_REF:0000107 NCBI chr 9:46,648,057...46,731,259
Ensembl chr 9:46,648,052...46,771,400 		JBrowse link
G PRKCZ protein kinase C zeta ISO Slc10a1/Ntcp-containing early endosomes RGD PMID:16734659 RGD:1642664 NCBI chr 5:57,012,020...57,113,346
Ensembl chr 5:57,012,070...57,112,664 		JBrowse link
G RAB1A RAB1A, member RAS oncogene family involved_in ISS
IEA		 UniProt
Ensembl		 GO_REF:0000024 GO_REF:0000107 NCBI chr10:64,564,351...64,590,654
Ensembl chr10:64,564,298...64,590,705 		JBrowse link
G RASGRP1 RAS guanyl releasing protein 1 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17190838) Ensembl
MGI		 PMID:17190838 GO_REF:0000107 NCBI chr30:5,840,901...5,914,804
Ensembl chr30:5,841,738...5,914,810 		JBrowse link
G SPG11 SPG11 vesicle trafficking associated, spatacsin involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:37871017) Ensembl
MGI		 PMID:37871017 GO_REF:0000107 NCBI chr30:11,233,709...11,305,454
Ensembl chr30:11,233,718...11,305,485 		JBrowse link
G VAMP7 vesicle associated membrane protein 7 involved_in ISO PMID:22705394 UniProt PMID:22705394 RGD:10047362 NCBI chr  X:123,717,524...123,783,781
Ensembl chr  X:123,717,446...123,783,014 		JBrowse link
anterograde neuronal dense core vesicle transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G KIF1A kinesin family member 1A involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr25:50,855,703...50,945,014
Ensembl chr25:50,858,698...50,944,964 		JBrowse link
G KIF1B kinesin family member 1B involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr 5:63,367,294...63,516,388
Ensembl chr 5:63,376,820...63,513,476 		JBrowse link
G KIF1C kinesin family member 1C involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr 5:31,613,335...31,635,313
Ensembl chr 5:31,613,398...31,633,736 		JBrowse link
G SYBU syntabulin ISO RGD PMID:17611281 RGD:13217407 NCBI chr13:10,110,183...10,179,514
Ensembl chr13:10,111,091...10,180,056 		JBrowse link
anterograde synaptic vesicle transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AP3B1 adaptor related protein complex 3 subunit beta 1 involved_in ISS
IBA
IEA		 UniProt
GO_Central
Ensembl		 GO_REF:0000024 GO_REF:0000033 GO_REF:0000107 NCBI chr 3:28,481,974...28,748,095
Ensembl chr 3:28,481,038...28,751,258 		JBrowse link
G AP3B2 adaptor related protein complex 3 subunit beta 2 involved_in ISO (MGI:5437407|PMID:21998198)
(PMID:21998198)		 UniProt PMID:21998198 MGI:5437407 NCBI chr 3:54,509,753...54,539,520
Ensembl chr 3:54,508,627...54,539,505 		JBrowse link
G AP3D1 adaptor related protein complex 3 subunit delta 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:56,893,479...56,932,460
Ensembl chr20:56,893,535...56,931,830 		JBrowse link
G AP3M1 adaptor related protein complex 3 subunit mu 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 4:24,521,655...24,540,232
Ensembl chr 4:24,516,758...24,540,232 		JBrowse link
G AP3M2 adaptor related protein complex 3 subunit mu 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr16:23,500,988...23,518,193
Ensembl chr16:23,454,325...23,518,193 		JBrowse link
G AP3S1 adaptor related protein complex 3 subunit sigma 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr11:5,543,140...5,611,322
Ensembl chr11:5,543,222...5,610,930 		JBrowse link
G AP3S2 adaptor related protein complex 3 subunit sigma 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:52,807,462...52,865,290
Ensembl chr 3:52,807,462...52,865,245 		JBrowse link
G BLOC1S1 biogenesis of lysosomal organelles complex 1 subunit 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr10:116,993...120,244 JBrowse link
G BLOC1S2 biogenesis of lysosomal organelles complex 1 subunit 2 involved_in IEA Ensembl GO_REF:0000107 NCBI chr28:13,040,016...13,044,364
Ensembl chr28:13,040,573...13,044,323 		JBrowse link
G BLOC1S3 biogenesis of lysosomal organelles complex 1 subunit 3 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 1:110,325,351...110,328,226
Ensembl chr 1:110,326,843...110,327,442 		JBrowse link
G BLOC1S4 biogenesis of lysosomal organelles complex 1 subunit 4 involved_in IEA Ensembl GO_REF:0000107 NCBI chr 3:58,822,405...58,823,770
Ensembl chr 3:58,822,482...58,823,138 		JBrowse link
G BLOC1S5 biogenesis of lysosomal organelles complex 1 subunit 5 involved_in ISO (MGI:5437407|PMID:21998198)
(PMID:21998198)		 UniProt PMID:21998198 MGI:5437407 NCBI chr35:7,860,336...7,998,461
Ensembl chr35:7,955,923...7,998,505 		JBrowse link
G BLOC1S6 biogenesis of lysosomal organelles complex 1 subunit 6 involved_in ISO (MGI:5437407|PMID:21998198)
(PMID:21998198)		 UniProt PMID:21998198 MGI:5437407 NCBI chr30:11,861,119...11,949,451
Ensembl chr30:11,811,339...11,937,353 		JBrowse link
G DTNBP1 dystrobrevin binding protein 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr35:14,738,025...14,862,609
Ensembl chr35:14,738,029...14,864,169 		JBrowse link
G KIF1A kinesin family member 1A involved_in ISO (PMID:7539720) SynGO PMID:7539720 NCBI chr25:50,855,703...50,945,014
Ensembl chr25:50,858,698...50,944,964 		JBrowse link
G KIF1B kinesin family member 1B involved_in ISO (PMID:11389829) UniProt PMID:11389829 NCBI chr 5:63,367,294...63,516,388
Ensembl chr 5:63,376,820...63,513,476 		JBrowse link
G MADD MAP kinase activating death domain involved_in ISO (PMID:18849981) SynGO PMID:18849981 NCBI chr18:42,290,226...42,332,237
Ensembl chr18:42,290,754...42,328,586 		JBrowse link
G SNAPIN SNAP associated protein involved_in ISO (MGI:5437407|PMID:21998198) UniProt PMID:21998198 MGI:5437407 NCBI chr 7:43,410,554...43,411,929
Ensembl chr 7:43,410,998...43,412,323 		JBrowse link
G TRIM46 tripartite motif containing 46 involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:26671463) Ensembl
MGI		 PMID:26671463 GO_REF:0000107 NCBI chr 7:42,345,506...42,354,667
Ensembl chr 7:42,345,523...42,354,557 		JBrowse link
negative regulation of anterograde synaptic vesicle transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CNIH2 cornichon family AMPA receptor auxiliary protein 2 involved_in ISO PMID:24094107 UniProt PMID:24094107 RGD:10400859 NCBI chr18:51,020,263...51,026,280
Ensembl chr18:51,021,116...51,026,273 		JBrowse link
plus-end-directed vesicle transport along microtubule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FYCO1 FYVE and coiled-coil domain autophagy adaptor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:42,520,241...42,593,886
Ensembl chr20:42,525,435...42,590,243 		JBrowse link
G KIF13A kinesin family member 13A involved_in ISO (MGI:5142383|PMID:11106728)
(PMID:11106728)		 UniProt PMID:11106728 MGI:5142383 NCBI chr35:16,621,581...16,748,500
Ensembl chr35:16,598,425...16,748,485 		JBrowse link
G KIF5B kinesin family member 5B involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:17360972) Ensembl
MGI		 PMID:17360972 GO_REF:0000107 NCBI chr 2:14,835,906...14,880,896
Ensembl chr 2:14,835,901...14,878,251 		JBrowse link
positive regulation of anterograde dense core granule transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MAP2 microtubule associated protein 2 involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr37:17,316,899...17,611,360
Ensembl chr37:17,466,678...17,607,803 		JBrowse link
G MECP2 methyl-CpG binding protein 2 ISO RGD PMID:22127389 RGD:12790715 NCBI chr  X:121,866,721...121,876,088
Ensembl chr  X:121,873,218...121,932,994 		JBrowse link
G TRIM46 tripartite motif containing 46 involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr 7:42,345,506...42,354,667
Ensembl chr 7:42,345,523...42,354,557 		JBrowse link
positive regulation of anterograde synaptic vesicle transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MAP2 microtubule associated protein 2 involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr37:17,316,899...17,611,360
Ensembl chr37:17,466,678...17,607,803 		JBrowse link
positive regulation of retrograde dense core granule transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G MECP2 methyl-CpG binding protein 2 ISO RGD PMID:22127389 RGD:12790715 NCBI chr  X:121,866,721...121,876,088
Ensembl chr  X:121,873,218...121,932,994 		JBrowse link
positive regulation of vesicle transport along microtubule term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G STK11 serine/threonine kinase 11 involved_in IEA Ensembl GO_REF:0000107 NCBI chr20:57,558,966...57,579,163
Ensembl chr20:57,559,424...57,579,118 		JBrowse link
retrograde neuronal dense core vesicle transport term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G KIF1A kinesin family member 1A involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr25:50,855,703...50,945,014
Ensembl chr25:50,858,698...50,944,964 		JBrowse link
G KIF1B kinesin family member 1B involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr 5:63,367,294...63,516,388
Ensembl chr 5:63,376,820...63,513,476 		JBrowse link
G KIF1C kinesin family member 1C involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr 5:31,613,335...31,635,313
Ensembl chr 5:31,613,398...31,633,736 		JBrowse link
G KIF5A kinesin family member 5A involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr10:1,637,007...1,666,790
Ensembl chr10:1,636,932...1,664,767 		JBrowse link
G KIF5B kinesin family member 5B involved_in ISO PMID:28426968 ARUK-UCL PMID:28426968 RGD:13514087 NCBI chr 2:14,835,906...14,880,896
Ensembl chr 2:14,835,901...14,878,251 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 17088
    localization 5316
      organelle localization 575
        establishment of organelle localization 444
          organelle transport along microtubule 79
            vesicle transport along microtubule 42
              anterograde neuronal dense core vesicle transport + 7
              minus-end-directed vesicle transport along microtubule 0
              negative regulation of vesicle transport along microtubule + 1
              plus-end-directed vesicle transport along microtubule + 3
              positive regulation of vesicle transport along microtubule + 4
              regulation of vesicle transport along microtubule + 5
              retrograde neuronal dense core vesicle transport + 6
              synaptic vesicle transport along microtubule + 21
Path 2
Term Annotations click to browse term
  biological_process 17088
    cellular process 16614
      cellular localization 3417
        establishment of localization in cell 1956
          intracellular transport 1229
            cytoskeleton-dependent intracellular transport 184
              transport along microtubule 165
                organelle transport along microtubule 79
                  vesicle transport along microtubule 42
                    anterograde neuronal dense core vesicle transport + 7
                    minus-end-directed vesicle transport along microtubule 0
                    negative regulation of vesicle transport along microtubule + 1
                    plus-end-directed vesicle transport along microtubule + 3
                    positive regulation of vesicle transport along microtubule + 4
                    regulation of vesicle transport along microtubule + 5
                    retrograde neuronal dense core vesicle transport + 6
                    synaptic vesicle transport along microtubule + 21
paths to the root