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ONTOLOGY REPORT - ANNOTATIONS


Term:heterocycle catabolic process
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Accession:GO:0046700 term browser browse the term
Definition:The chemical reactions and pathways resulting in the breakdown of heterocyclic compounds, those with a cyclic molecular structure and at least two different atoms in the ring (or rings).
Synonyms:exact_synonym: heterocycle breakdown;   heterocycle catabolism;   heterocycle degradation


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3'-UTR-mediated mRNA destabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cpeb3 cytoplasmic polyadenylation element binding protein 3 involved_in ISO (PMID:21336257) UniProt PMID:21336257 NCBI chrNW_004955425:1,032,446...1,224,300
Ensembl chrNW_004955425:1,057,575...1,224,300
JBrowse link
G Dhx36 DEAH-box helicase 36 involved_in ISO (PMID:26489465) UniProt PMID:26489465 NCBI chrNW_004955448:5,634,072...5,676,272
Ensembl chrNW_004955448:5,634,072...5,676,319
JBrowse link
G Dnd1 DND microRNA-mediated repression inhibitor 1 involved_in ISO (PMID:28297718) CACAO PMID:28297718 NCBI chrNW_004955418:30,795...33,394
Ensembl chrNW_004955418:30,893...32,936
JBrowse link
G Hnrnpd heterogeneous nuclear ribonucleoprotein D ISO RGD PMID:20805360 RGD:10042974 NCBI chrNW_004955433:6,452,931...6,470,209
Ensembl chrNW_004955433:6,454,454...6,469,904
JBrowse link
G Khsrp KH-type splicing regulatory protein involved_in ISO (PMID:28275056)
(PMID:16126846)
CACAO
UniProt
PMID:16126846 PMID:28275056 NCBI chrNW_004955495:3,183,083...3,194,356
Ensembl chrNW_004955495:3,183,179...3,193,376
JBrowse link
G Mov10 Mov10 RISC complex RNA helicase involved_in ISO (PMID:24726324) UniProt PMID:24726324 NCBI chrNW_004955435:16,093,471...16,114,735
Ensembl chrNW_004955435:16,092,790...16,117,206
JBrowse link
G Plekhn1 pleckstrin homology domain containing N1 involved_in ISO (PMID:29180010)
(MGI:6105829|PMID:27616329)
UniProt PMID:27616329 PMID:29180010 MGI:6105829 NCBI chrNW_004955486:9,736,801...9,744,659
Ensembl chrNW_004955486:9,737,365...9,744,111
JBrowse link
G Qki QKI, KH domain containing RNA binding acts_upstream_of_or_within ISO (MGI:5316962|PMID:20631256) MGI PMID:20631256 MGI:5316962 NCBI chrNW_004955439:17,925,205...18,079,727 JBrowse link
G Rbm24 RNA binding motif protein 24 involved_in ISO (PMID:24375645) UniProt PMID:24375645 NCBI chrNW_004955483:8,705,533...8,716,772
Ensembl chrNW_004955483:8,705,213...8,716,778
JBrowse link
G Rc3h1 ring finger and CCCH-type domains 1 involved_in ISO (MGI:5706859|PMID:26000482), (MGI:5751631|PMID:26255671) UniProt PMID:26000482 PMID:26255671 MGI:5706859 MGI:5751631 NCBI chrNW_004955406:14,053,122...14,123,023
Ensembl chrNW_004955406:14,053,122...14,123,029
JBrowse link
G Tardbp TAR DNA binding protein involved_in ISO (PMID:28335005) CACAO PMID:28335005 NCBI chrNW_004955486:2,656,121...2,674,808
Ensembl chrNW_004955486:2,656,121...2,674,807
JBrowse link
G Trim71 tripartite motif containing 71 involved_in ISO (PMID:23125361) CACAO PMID:23125361 NCBI chrNW_004955421:97,130...174,326
Ensembl chrNW_004955421:97,772...168,432
JBrowse link
G Upf1 UPF1 RNA helicase and ATPase involved_in ISO (PMID:26255671)
(PMID:24726324)
UniProt PMID:24726324 PMID:26255671 NCBI chrNW_004955524:2,798,336...2,814,063
Ensembl chrNW_004955524:2,798,336...2,913,176
JBrowse link
G Zc3h12a zinc finger CCCH-type containing 12A involved_in ISO (PMID:19909337)
(MGI:3842851|PMID:19322177), (MGI:5706859|PMID:26000482), (MGI:5706909|PMID:23185455), (MGI:5707103|PMID:26134560), (MGI:5751631|PMID:26255671)
UniProt PMID:19322177 PMID:19909337 PMID:23185455 PMID:26000482 PMID:26134560 PMID:26255671 MGI:3842851 MGI:5706859 MGI:5706909 MGI:5707103 MGI:5751631 NCBI chrNW_004955452:15,306,398...15,314,959
Ensembl chrNW_004955452:15,305,775...15,314,959
JBrowse link
G Zc3h12d zinc finger CCCH-type containing 12D involved_in ISO (MGI:5707103|PMID:26134560) UniProt PMID:26134560 MGI:5707103 NCBI chrNW_004955439:11,761,099...11,787,508
Ensembl chrNW_004955439:11,768,812...11,785,230
JBrowse link
G Zfp36 ZFP36 ring finger protein involved_in ISO (PMID:14679154), (PMID:15187101), (PMID:15634918), (PMID:15766526)
(MGI:5795824|PMID:17288565)
(MGI:5784976|PMID:22701344), (MGI:5788345|PMID:27193233)
(PMID:11719186), (PMID:15687258), (PMID:20221403), (PMID:27193233), (PMID:9703499)
UniProt PMID:9703499 PMID:11719186 PMID:14679154 PMID:15187101 PMID:15634918 PMID:15687258 PMID:15766526 PMID:17288565 PMID:20221403 PMID:22701344 PMID:27193233 MGI:5784976 MGI:5788345 MGI:5795824 NCBI chrNW_004955468:152,744...155,140
Ensembl chrNW_004955468:152,744...155,140
JBrowse link
G Zfp36l1 ZFP36 ring finger protein like 1 involved_in ISO (PMID:12198173), (PMID:25014217), (PMID:25106868)
(MGI:5779430|PMID:27102483), (MGI:5784968|PMID:24700863)
(MGI:4818820|PMID:20622884), (MGI:5784967|PMID:24733888), (MGI:5784976|PMID:22701344)
(PMID:15467755), (PMID:15538381), (PMID:15687258), (PMID:18326031), (PMID:19179481), (PMID:24700863), (PMID:26542173)
UniProt PMID:12198173 PMID:15467755 PMID:15538381 PMID:15687258 PMID:18326031 PMID:19179481 PMID:20622884 PMID:22701344 PMID:24700863 PMID:24733888 PMID:25014217 PMID:25106868 PMID:26542173 PMID:27102483 MGI:4818820 MGI:5779430 MGI:5784967 MGI:5784968 MGI:5784976 NCBI chrNW_004955466:1,541,367...1,546,617
Ensembl chrNW_004955466:1,541,323...1,546,617
JBrowse link
G Zfp36l2 ZFP36 ring finger protein like 2 involved_in ISO (PMID:25106868)
(MGI:4818820|PMID:20622884), (MGI:5784976|PMID:22701344)
UniProt PMID:20622884 PMID:22701344 PMID:25106868 MGI:4818820 MGI:5784976 NCBI chrNW_004955441:10,467,608...10,469,885 JBrowse link
3'-UTR-mediated mRNA stabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Angel2 angel homolog 2 involved_in ISO (PMID:22547059) HGNC PMID:22547059 NCBI chrNW_004955406:4,589,849...4,606,380
Ensembl chrNW_004955406:4,589,849...4,606,380
JBrowse link
G Elavl1 ELAV like RNA binding protein 1 involved_in ISO (PMID:14517288), (PMID:26489465), (PMID:29180010)
(MGI:6105829|PMID:27616329)
(PMID:19029303)
UniProt PMID:14517288 PMID:19029303 PMID:26489465 PMID:27616329 PMID:29180010 MGI:6105829 NCBI chrNW_004955563:1,283,424...1,315,283
Ensembl chrNW_004955563:1,283,421...1,315,283
JBrowse link
G Elavl4 ELAV like RNA binding protein 4 involved_in ISO (PMID:12034726) UniProt PMID:12034726 NCBI chrNW_004955464:8,699,142...8,847,289
Ensembl chrNW_004955464:8,699,088...8,788,878
JBrowse link
G Hnrnpa0 heterogeneous nuclear ribonucleoprotein A0 involved_in ISO (MGI:5306322|PMID:12456657) UniProt PMID:12456657 MGI:5306322 NCBI chrNW_004955408:32,718,736...32,719,409 JBrowse link
G Hnrnpc heterogeneous nuclear ribonucleoprotein C involved_in ISO (PMID:16010978) UniProt PMID:16010978 NCBI chrNW_004955550:1,949,975...2,002,297
Ensembl chrNW_004955550:1,949,975...2,002,297
JBrowse link
G Mapkapk2 MAPK activated protein kinase 2 involved_in ISO (PMID:14517288), (PMID:15014438), (PMID:20932473) UniProt PMID:14517288 PMID:15014438 PMID:20932473 NCBI chrNW_004955406:42,231,858...42,276,477
Ensembl chrNW_004955406:42,231,858...42,276,477
JBrowse link
G Myd88 MYD88 innate immune signal transduction adaptor involved_in ISO (PMID:15294994) BHF-UCL PMID:15294994 NCBI chrNW_004955427:25,553,589...25,557,654
Ensembl chrNW_004955427:25,553,589...25,559,138
JBrowse link
G Ptbp1 polypyrimidine tract binding protein 1 ISO RGD PMID:11696543 RGD:10045987 NCBI chrNW_004955495:6,990,565...7,002,492
Ensembl chrNW_004955495:6,987,182...7,002,492
JBrowse link
G Rbm10 RNA binding motif protein 10 acts_upstream_of_or_within ISO (MGI:4367529|PMID:19508861) MGI PMID:19508861 MGI:4367529 NCBI chrNW_004955516:904,852...934,313
Ensembl chrNW_004955516:904,062...934,313
JBrowse link
G Rbm38 RNA binding motif protein 38 involved_in ISO (PMID:17050675) UniProt PMID:17050675 NCBI chrNW_004955445:2,036,314...2,050,882
Ensembl chrNW_004955445:2,036,124...2,052,139
JBrowse link
G Tardbp TAR DNA binding protein involved_in ISO (PMID:17481916) BHF-UCL PMID:17481916 NCBI chrNW_004955486:2,656,121...2,674,808
Ensembl chrNW_004955486:2,656,121...2,674,807
JBrowse link
G Tirap TIR domain containing adaptor protein involved_in ISO (PMID:15294994) BHF-UCL PMID:15294994 NCBI chrNW_004955412:27,303,548...27,315,031
Ensembl chrNW_004955412:27,312,489...27,315,031
JBrowse link
G Zfp36 ZFP36 ring finger protein involved_in ISO (PMID:15014438) UniProt PMID:15014438 NCBI chrNW_004955468:152,744...155,140
Ensembl chrNW_004955468:152,744...155,140
JBrowse link
5-methylcytosine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tet2 tet methylcytosine dioxygenase 2 involved_in ISO (PMID:24315485) UniProt PMID:24315485 NCBI chrNW_004955496:3,885,684...3,963,056
Ensembl chrNW_004955496:3,885,035...3,926,106
JBrowse link
acetyl-CoA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acat1 acetyl-CoA acetyltransferase 1 involved_in ISO (PMID:17371050) BHF-UCL PMID:17371050 NCBI chrNW_004955412:10,350,088...10,369,806
Ensembl chrNW_004955412:10,349,593...10,369,806
JBrowse link
G Nudt7 nudix hydrolase 7 acts_upstream_of_or_within
involved_in
ISO (MGI:2137102|PMID:11415433)
(MGI:6450264|PMID:18799520)
MGI
UniProt
PMID:11415433 PMID:18799520 MGI:2137102 MGI:6450264 NCBI chrNW_004955522:945,186...960,094
Ensembl chrNW_004955522:944,565...960,244
JBrowse link
adenosine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase acts_upstream_of_or_within
involved_in
ISO (MGI:2151677|PMID:11591798), (MGI:3531253|PMID:8663040)
(PMID:8894685)
(PMID:16670267)
(MGI:4835158|PMID:8672487)
(MGI:1095761|PMID:9272950), (MGI:3531253|PMID:8663040), (MGI:3808984|PMID:2015347), (MGI:49990|PMID:1618849), (MGI:59127|PMID:2387582), (MGI:76875|PMID:7592575), (MGI:83255|PMID:8894685)
(MGI:1861066|PMID:10899903), (MGI:2155238|PMID:9478961), (MGI:3525377|PMID:15630442), (MGI:3619310|PMID:14607964), (MGI:3640719|PMID:10720488), (MGI:3664521|PMID:16841096), (MGI:3794903|PMID:18340377)
(MGI:74163|PMID:7670465)
(MGI:1095761|PMID:9272950), (MGI:72798|PMID:7731963)
MGI
UniProt
PMID:1618849 PMID:2015347 PMID:2387582 PMID:7592575 PMID:7670465 PMID:7731963 PMID:8663040 PMID:8672487 PMID:8894685 PMID:9272950 PMID:9478961 PMID:10720488 PMID:10899903 PMID:11591798 PMID:14607964 PMID:15630442 PMID:16670267 PMID:16841096 PMID:18340377 MGI:1095761 MGI:1861066 MGI:2151677 MGI:2155238 MGI:3525377 MGI:3531253 MGI:3619310 MGI:3640719 MGI:3664521 MGI:3794903 MGI:3808984 MGI:4835158 MGI:49990 MGI:59127 MGI:72798 MGI:74163 MGI:76875 MGI:83255 NCBI chrNW_004955445:12,696,096...12,717,488
Ensembl chrNW_004955445:12,696,096...12,717,488
JBrowse link
G Ada2 adenosine deaminase 2 involved_in ISO (PMID:20147294) UniProt PMID:20147294 NCBI chrNW_004955454:5,341,822...5,355,383 JBrowse link
ADP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ampd3 adenosine monophosphate deaminase 3 involved_in ISO (MGI:5917829|PMID:28746349) MGI PMID:28746349 MGI:5917829 NCBI chrNW_004955414:26,073,192...26,116,448
Ensembl chrNW_004955414:26,072,855...26,116,448
JBrowse link
G Entpd1 ectonucleoside triphosphate diphosphohydrolase 1 involved_in ISO (MGI:3760051|PMID:17502665) MGI PMID:17502665 MGI:3760051 NCBI chrNW_004955507:2,035,918...2,141,327
Ensembl chrNW_004955507:2,036,050...2,137,377
JBrowse link
G Nt5e 5'-nucleotidase ecto involved_in ISO (MGI:6478084|PMID:20430891)
(MGI:5917829|PMID:28746349)
MGI PMID:20430891 PMID:28746349 MGI:5917829 MGI:6478084 NCBI chrNW_004955411:12,891,236...12,946,324
Ensembl chrNW_004955411:12,891,236...12,948,406
JBrowse link
G Nudt9 nudix hydrolase 9 acts_upstream_of_or_within ISO (MGI:2158549|PMID:11825615) MGI PMID:11825615 MGI:2158549 NCBI chrNW_004955474:2,402,400...2,438,145
Ensembl chrNW_004955474:2,397,665...2,438,048
JBrowse link
aflatoxin catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nfe2l2 nuclear factor, erythroid 2 like 2 ISO RGD PMID:27071940 RGD:12910550 NCBI chrNW_004955403:19,510,122...19,536,428
Ensembl chrNW_004955403:19,532,103...19,535,944
JBrowse link
AMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase involved_in ISO (MGI:6478860|PMID:8064675) MGI PMID:8064675 MGI:6478860 NCBI chrNW_004955445:12,696,096...12,717,488
Ensembl chrNW_004955445:12,696,096...12,717,488
JBrowse link
G Ampd3 adenosine monophosphate deaminase 3 involved_in ISO (MGI:5917829|PMID:28746349) MGI PMID:28746349 MGI:5917829 NCBI chrNW_004955414:26,073,192...26,116,448
Ensembl chrNW_004955414:26,072,855...26,116,448
JBrowse link
G Nt5c1a 5'-nucleotidase, cytosolic IA involved_in ISO (PMID:11133996) MGI PMID:11133996 NCBI chrNW_004955452:17,172,217...17,188,597
Ensembl chrNW_004955452:17,172,217...17,188,756
JBrowse link
G Nt5c1b 5'-nucleotidase, cytosolic IB involved_in ISO (MGI:2153435|PMID:11690631) MGI PMID:11690631 MGI:2153435 NCBI chrNW_004955469:1,287,455...1,300,716 JBrowse link
G Nt5e 5'-nucleotidase ecto involved_in
acts_upstream_of_or_within
ISO (MGI:5917829|PMID:28746349)
(MGI:3770326|PMID:16547283)
(MGI:6478084|PMID:20430891)
RGD
MGI
PMID:16547283 PMID:20430891 PMID:21414400 PMID:28746349 MGI:3770326 MGI:5917829 MGI:6478084 RGD:5134346 NCBI chrNW_004955411:12,891,236...12,946,324
Ensembl chrNW_004955411:12,891,236...12,948,406
JBrowse link
apoptotic DNA fragmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dffb DNA fragmentation factor subunit beta acts_upstream_of_or_within
involved_in
ISO (PMID:15572351)
(PMID:22253444)
RGD
MGI
CAFA
PMID:11425895 PMID:15572351 PMID:22253444 RGD:628524 NCBI chrNW_004955486:7,836,013...7,849,875
Ensembl chrNW_004955486:7,838,273...7,850,180
JBrowse link
G Dnase1l3 deoxyribonuclease 1 like 3 involved_in
acts_upstream_of_or_within
ISO (PMID:23229555)
(MGI:2385551|PMID:12050166)
UniProt
MGI
PMID:12050166 PMID:23229555 MGI:2385551 NCBI chrNW_004955430:7,867,172...7,892,079
Ensembl chrNW_004955430:7,867,109...7,892,079
JBrowse link
G Endog endonuclease G acts_upstream_of_or_within ISO (MGI:3029597|PMID:14663139) MGI PMID:14663139 MGI:3029597 NCBI chrNW_004955570:1,200,461...1,203,566
Ensembl chrNW_004955570:1,200,996...1,203,566
JBrowse link
G Foxl2 forkhead box L2 involved_in ISO (PMID:16153597) UniProt PMID:16153597 NCBI chrNW_004955501:83,965...84,476 JBrowse link
butyryl-CoA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt7 nudix hydrolase 7 involved_in ISO (MGI:6450264|PMID:18799520) UniProt PMID:18799520 MGI:6450264 NCBI chrNW_004955522:945,186...960,094
Ensembl chrNW_004955522:944,565...960,244
JBrowse link
cAMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pde4d phosphodiesterase 4D involved_in ISO (PMID:20819076) BHF-UCL PMID:20819076 NCBI chrNW_004955446:7,914,326...9,252,527
Ensembl chrNW_004955446:8,211,877...9,252,653
JBrowse link
cGMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pde1a phosphodiesterase 1A ISO RGD PMID:16514069 RGD:2312521 NCBI chrNW_004955403:14,906,069...15,202,710
Ensembl chrNW_004955403:14,906,479...15,203,313
JBrowse link
G Pde2a phosphodiesterase 2A involved_in ISO (PMID:19828435)
(MGI:4420377|PMID:19632989)
UniProt PMID:19632989 PMID:19828435 MGI:4420377 NCBI chrNW_004955414:18,765,591...18,826,717
Ensembl chrNW_004955414:18,735,822...18,827,236
JBrowse link
G Pde5a phosphodiesterase 5A acts_upstream_of_or_within ISO (MGI:2450821|PMID:12554648) MGI PMID:12554648 MGI:2450821 NCBI chrNW_004955428:20,785,497...20,904,717
Ensembl chrNW_004955428:20,785,423...20,904,717
JBrowse link
G Pde9a phosphodiesterase 9A involved_in ISO (PMID:25799991)
(MGI:1266874|PMID:9624145)
(MGI:5634842|PMID:25799991)
UniProt PMID:9624145 PMID:25799991 MGI:1266874 MGI:5634842 NCBI chrNW_004955407:39,090,718...39,165,363
Ensembl chrNW_004955407:39,087,952...39,165,370
JBrowse link
CMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Upp1 uridine phosphorylase 1 involved_in ISO (MGI:2683856|PMID:14715930) MGI PMID:14715930 MGI:2683856 NCBI chrNW_004955456:5,365,912...5,385,336
Ensembl chrNW_004955456:5,365,877...5,385,336
JBrowse link
G Upp2 uridine phosphorylase 2 involved_in ISO (MGI:2683856|PMID:14715930) MGI PMID:14715930 MGI:2683856 NCBI chrNW_004955449:15,355,592...15,405,997
Ensembl chrNW_004955449:15,365,106...15,405,235
JBrowse link
cobalamin catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cubn cubilin ISO RGD PMID:14576052 RGD:8554807 NCBI chrNW_004955429:10,789,674...11,038,297
Ensembl chrNW_004955429:10,788,959...11,038,845
JBrowse link
coenzyme A catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt7 nudix hydrolase 7 involved_in
acts_upstream_of_or_within
ISO (MGI:6450264|PMID:18799520)
(MGI:2137102|PMID:11415433)
UniProt
MGI
PMID:11415433 PMID:18799520 MGI:2137102 MGI:6450264 NCBI chrNW_004955522:945,186...960,094
Ensembl chrNW_004955522:944,565...960,244
JBrowse link
coumarin catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pon3 paraoxonase 3 ISO RGD PMID:12946270 RGD:1303961 NCBI chrNW_004955432:11,945,383...11,983,417
Ensembl chrNW_004955432:11,942,922...11,983,504
JBrowse link
CRD-mediated mRNA stabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dhx9 DExH-box helicase 9 involved_in ISO (PMID:19029303) UniProt PMID:19029303 NCBI chrNW_004955406:21,697,813...21,743,551
Ensembl chrNW_004955406:21,697,813...21,745,011
JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U involved_in ISO (PMID:19029303) UniProt PMID:19029303 NCBI chrNW_004955406:8,000,269...8,021,554
Ensembl chrNW_004955406:8,000,269...8,021,554
JBrowse link
G Igf2bp1 insulin like growth factor 2 mRNA binding protein 1 involved_in ISO (PMID:19029303) UniProt PMID:19029303 NCBI chrNW_004955451:12,312,715...12,348,663
Ensembl chrNW_004955451:12,312,715...12,348,663
JBrowse link
G Syncrip synaptotagmin binding cytoplasmic RNA interacting protein involved_in ISO (PMID:19029303) UniProt PMID:19029303 NCBI chrNW_004955411:13,068,078...13,096,936
Ensembl chrNW_004955411:13,066,789...13,096,938
JBrowse link
G Ybx1 Y-box binding protein 1 involved_in ISO (PMID:19029303) UniProt PMID:19029303 NCBI chrNW_004955537:2,234,052...2,254,528
Ensembl chrNW_004955537:2,234,054...2,251,708
JBrowse link
CTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd7 ectonucleoside triphosphate diphosphohydrolase 7 involved_in ISO (PMID:11278936) UniProt PMID:11278936 NCBI chrNW_004955507:5,552,788...5,594,911
Ensembl chrNW_004955507:5,552,764...5,594,911
JBrowse link
CUT catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dis3 DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease involved_in ISO (PMID:19056938) UniProt PMID:19056938 NCBI chrNW_004955404:33,897,681...33,924,069
Ensembl chrNW_004955404:33,897,237...33,924,069
JBrowse link
G Exosc10 exosome component 10 involved_in ISO (PMID:19056938) UniProt PMID:19056938 NCBI chrNW_004955486:2,601,362...2,626,451
Ensembl chrNW_004955486:2,601,322...2,626,876
JBrowse link
G Exosc3 exosome component 3 involved_in ISO (PMID:19056938) UniProt PMID:19056938 NCBI chrNW_004955419:28,683,896...28,692,006
Ensembl chrNW_004955419:28,683,896...28,693,395
JBrowse link
cytidine deamination term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cda cytidine deaminase involved_in ISO (PMID:9596658) RGD
UniProt
PMID:675715 PMID:9596658 RGD:2316616 NCBI chrNW_004955452:1,131,968...1,156,777
Ensembl chrNW_004955452:1,132,049...1,156,565
JBrowse link
G Cdadc1 cytidine and dCMP deaminase domain containing 1 involved_in ISO (PMID:26945630) UniProt PMID:26945630 NCBI chrNW_004955431:2,724,988...2,767,539
Ensembl chrNW_004955431:2,725,742...2,767,664
JBrowse link
dADP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt18 nudix hydrolase 18 involved_in ISO (PMID:22556419) UniProt PMID:22556419 NCBI chrNW_004955403:45,598,813...45,601,940 JBrowse link
dAMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase involved_in ISO (MGI:3640719|PMID:10720488) MGI PMID:10720488 MGI:3640719 NCBI chrNW_004955445:12,696,096...12,717,488
Ensembl chrNW_004955445:12,696,096...12,717,488
JBrowse link
G Nt5c1a 5'-nucleotidase, cytosolic IA involved_in ISO (PMID:11133996) MGI PMID:11133996 NCBI chrNW_004955452:17,172,217...17,188,597
Ensembl chrNW_004955452:17,172,217...17,188,756
JBrowse link
G Pnp purine nucleoside phosphorylase involved_in ISO (PMID:6771276) MGI PMID:6771276 NCBI chrNW_004955550:1,290,816...1,299,553
Ensembl chrNW_004955550:1,290,244...1,298,068
JBrowse link
dATP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase acts_upstream_of_or_within ISO (MGI:2155238|PMID:9478961), (MGI:3619310|PMID:14607964)
(MGI:76875|PMID:7592575)
(MGI:72798|PMID:7731963)
(MGI:74163|PMID:7670465)
MGI PMID:7592575 PMID:7670465 PMID:7731963 PMID:9478961 PMID:14607964 MGI:2155238 MGI:3619310 MGI:72798 MGI:74163 MGI:76875 NCBI chrNW_004955445:12,696,096...12,717,488
Ensembl chrNW_004955445:12,696,096...12,717,488
JBrowse link
G Samhd1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 involved_in ISO (PMID:24141705)
(MGI:5828027|PMID:27920203)
UniProt
MGI
PMID:24141705 PMID:27920203 MGI:5828027 NCBI chrNW_004955422:24,714,103...24,780,672
Ensembl chrNW_004955422:24,735,161...24,778,830
JBrowse link
dCMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nt5c 5', 3'-nucleotidase, cytosolic involved_in ISO (MGI:55510|PMID:6301357) MGI PMID:6301357 MGI:55510 NCBI chrNW_004955553:2,011,549...2,014,209
Ensembl chrNW_004955553:2,011,738...2,013,443
JBrowse link
G Upp1 uridine phosphorylase 1 involved_in ISO (MGI:73237|PMID:7744869) MGI PMID:7744869 MGI:73237 NCBI chrNW_004955456:5,365,912...5,385,336
Ensembl chrNW_004955456:5,365,877...5,385,336
JBrowse link
G Upp2 uridine phosphorylase 2 involved_in ISO (PMID:12849978) MGI PMID:12849978 NCBI chrNW_004955449:15,355,592...15,405,997
Ensembl chrNW_004955449:15,365,106...15,405,235
JBrowse link
dCTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dctpp1 dCTP pyrophosphatase 1 involved_in ISO (PMID:24467396) UniProt PMID:24467396 NCBI chrNW_004955493:7,357,204...7,360,034
Ensembl chrNW_004955493:7,357,204...7,360,034
JBrowse link
deadenylation-dependent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnot7 CCR4-NOT transcription complex subunit 7 acts_upstream_of_or_within ISO (MGI:3807625|PMID:18625844) MGI PMID:18625844 MGI:3807625 NCBI chrNW_004955463:285,228...306,077
Ensembl chrNW_004955463:285,228...306,077
JBrowse link
G Noct nocturnin acts_upstream_of_or_within ISO (MGI:3807625|PMID:18625844) MGI PMID:18625844 MGI:3807625 NCBI chrNW_004955428:4,559,027...4,580,013 JBrowse link
G Pan3 poly(A) specific ribonuclease subunit PAN3 acts_upstream_of_or_within ISO (MGI:3807625|PMID:18625844) MGI PMID:18625844 MGI:3807625 NCBI chrNW_004955497:7,500,478...7,646,541
Ensembl chrNW_004955497:7,500,748...7,647,255
JBrowse link
G Patl1 PAT1 homolog 1, processing body mRNA decay factor involved_in ISO (PMID:20584987), (PMID:20852261) UniProt PMID:20584987 PMID:20852261 NCBI chrNW_004955511:4,090,841...4,119,077
Ensembl chrNW_004955511:4,092,257...4,119,077
JBrowse link
deoxyadenosine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ada adenosine deaminase acts_upstream_of_or_within ISO (MGI:74163|PMID:7670465)
(MGI:2155238|PMID:9478961), (MGI:3619310|PMID:14607964), (MGI:3640719|PMID:10720488)
(MGI:1095761|PMID:9272950), (MGI:72798|PMID:7731963)
(MGI:76875|PMID:7592575)
MGI PMID:7592575 PMID:7670465 PMID:7731963 PMID:9272950 PMID:9478961 PMID:10720488 PMID:14607964 MGI:1095761 MGI:2155238 MGI:3619310 MGI:3640719 MGI:72798 MGI:74163 MGI:76875 NCBI chrNW_004955445:12,696,096...12,717,488
Ensembl chrNW_004955445:12,696,096...12,717,488
JBrowse link
G Pnp purine nucleoside phosphorylase involved_in ISO (PMID:6771276) MGI PMID:6771276 NCBI chrNW_004955550:1,290,816...1,299,553
Ensembl chrNW_004955550:1,290,244...1,298,068
JBrowse link
deoxyguanosine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gda guanine deaminase involved_in ISO (MGI:6478860|PMID:8064675) MGI PMID:8064675 MGI:6478860 NCBI chrNW_004955434:983,388...1,050,413
Ensembl chrNW_004955434:983,388...1,049,948
JBrowse link
deoxyinosine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pnp purine nucleoside phosphorylase involved_in ISO (PMID:6771276) MGI PMID:6771276 NCBI chrNW_004955550:1,290,816...1,299,553
Ensembl chrNW_004955550:1,290,244...1,298,068
JBrowse link
deoxyribonucleoside catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dera deoxyribose-phosphate aldolase involved_in ISO (PMID:9226884) UniProt PMID:9226884 NCBI chrNW_004955413:12,571,341...12,682,985
Ensembl chrNW_004955413:12,571,176...12,685,852
JBrowse link
deoxyribonucleoside monophosphate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnph1 2'-deoxynucleoside 5'-phosphate N-hydrolase 1 involved_in ISO PMID:17234634
(PMID:25108359)
UniProt PMID:17234634 PMID:25108359 RGD:8553712 NCBI chrNW_004955437:9,145,737...9,147,388
Ensembl chrNW_004955437:9,145,737...9,147,387
JBrowse link
deoxyribonucleotide catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nt5c 5', 3'-nucleotidase, cytosolic acts_upstream_of_or_within ISO (MGI:1353788|PMID:10681516) MGI PMID:10681516 MGI:1353788 NCBI chrNW_004955553:2,011,549...2,014,209
Ensembl chrNW_004955553:2,011,738...2,013,443
JBrowse link
G Samhd1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 involved_in ISO (PMID:23601106), (PMID:26294762) UniProt PMID:23601106 PMID:26294762 NCBI chrNW_004955422:24,714,103...24,780,672
Ensembl chrNW_004955422:24,735,161...24,778,830
JBrowse link
dGDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt18 nudix hydrolase 18 involved_in ISO (PMID:22556419) UniProt PMID:22556419 NCBI chrNW_004955403:45,598,813...45,601,940 JBrowse link
dGMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gda guanine deaminase involved_in ISO (MGI:6478860|PMID:8064675) MGI PMID:8064675 MGI:6478860 NCBI chrNW_004955434:983,388...1,050,413
Ensembl chrNW_004955434:983,388...1,049,948
JBrowse link
G Nt5c 5', 3'-nucleotidase, cytosolic involved_in ISO (MGI:1353788|PMID:10681516) MGI PMID:10681516 MGI:1353788 NCBI chrNW_004955553:2,011,549...2,014,209
Ensembl chrNW_004955553:2,011,738...2,013,443
JBrowse link
G Nt5c1a 5'-nucleotidase, cytosolic IA involved_in ISO (PMID:11133996) MGI PMID:11133996 NCBI chrNW_004955452:17,172,217...17,188,597
Ensembl chrNW_004955452:17,172,217...17,188,756
JBrowse link
G Nt5c2 5'-nucleotidase, cytosolic II involved_in ISO (MGI:6478530|PMID:5560407) MGI PMID:5560407 MGI:6478530 NCBI chrNW_004955485:7,318,006...7,394,448
Ensembl chrNW_004955485:7,317,588...7,394,448
JBrowse link
dGTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt15 nudix hydrolase 15 involved_in ISO (PMID:22556419) UniProt PMID:22556419 NCBI chrNW_004955431:1,767,971...1,775,555
Ensembl chrNW_004955431:1,767,525...1,775,555
JBrowse link
G Samhd1 SAM and HD domain containing deoxynucleoside triphosphate triphosphohydrolase 1 involved_in ISO (PMID:24217394) UniProt PMID:24217394 NCBI chrNW_004955422:24,714,103...24,780,672
Ensembl chrNW_004955422:24,735,161...24,778,830
JBrowse link
diadenosine triphosphate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fhit fragile histidine triad diadenosine triphosphatase involved_in ISO (PMID:8794732) RGD
UniProt
PMID:8794732 PMID:16359767 RGD:2289929 NCBI chrNW_004955430:221,518...508,094 JBrowse link
dibenzo-p-dioxin catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G LOC102010850 cytochrome P450 1A1 ISO 2,3,7,8-tetrachlorodibenzo-p-dioxin RGD PMID:12914780 PMID:15812643 RGD:2306662 RGD:2306673 NCBI chrNW_004955450:3,183,958...3,189,488
Ensembl chrNW_004955450:3,183,750...3,189,488
JBrowse link
dITP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt16 nudix hydrolase 16 acts_upstream_of_or_within ISO (MGI:5009783|PMID:20081199) MGI PMID:20081199 MGI:5009783 NCBI chrNW_004955501:7,083,068...7,085,505 JBrowse link
DNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dffb DNA fragmentation factor subunit beta involved_in ISO (PMID:19944011) CAFA PMID:19944011 NCBI chrNW_004955486:7,836,013...7,849,875
Ensembl chrNW_004955486:7,838,273...7,850,180
JBrowse link
G Dnase1l2 deoxyribonuclease 1 like 2 acts_upstream_of_or_within ISO (MGI:5308183|PMID:21307874) MGI PMID:21307874 MGI:5308183 NCBI chrNW_004955442:15,028,168...15,031,110
Ensembl chrNW_004955442:15,028,168...15,031,110
JBrowse link
G Trex1 three prime repair exonuclease 1 acts_upstream_of_or_within ISO (MGI:3834787|PMID:18724932), (MGI:4414715|PMID:19923437), (MGI:5562498|PMID:23993650)
(MGI:4848004|PMID:20871604)
(MGI:5637600|PMID:25848017)
MGI PMID:18724932 PMID:19923437 PMID:20871604 PMID:23993650 PMID:25848017 MGI:3834787 MGI:4414715 MGI:4848004 MGI:5562498 MGI:5637600 NCBI chrNW_004955532:533,877...535,767
Ensembl chrNW_004955532:533,877...535,767
JBrowse link
DNA catabolic process, endonucleolytic term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dnase1 deoxyribonuclease 1 involved_in ISO (MGI:6094744|PMID:29191910) UniProt PMID:29191910 MGI:6094744 NCBI chrNW_004955442:13,733,107...13,736,527 JBrowse link
G Dnase1l3 deoxyribonuclease 1 like 3 involved_in ISO (MGI:6094744|PMID:29191910) UniProt PMID:29191910 MGI:6094744 NCBI chrNW_004955430:7,867,172...7,892,079
Ensembl chrNW_004955430:7,867,109...7,892,079
JBrowse link
G Fbh1 F-box DNA helicase 1 acts_upstream_of_or_within ISO (PMID:23361013) MGI PMID:23361013 NCBI chrNW_004955421:22,535,777...22,579,965
Ensembl chrNW_004955421:22,535,777...22,579,965
JBrowse link
G LOC102020128 histone-lysine N-methyltransferase SETMAR involved_in ISO (PMID:20521842), (PMID:21491884)
(PMID:24573677)
UniProt PMID:20521842 PMID:21491884 PMID:24573677 NCBI chrNW_004955421:9,066,906...9,080,352 JBrowse link
G Mus81 MUS81 structure-specific endonuclease subunit acts_upstream_of_or_within ISO (PMID:23361013) MGI PMID:23361013 NCBI chrNW_004955422:19,471,552...19,479,121
Ensembl chrNW_004955422:19,471,552...19,479,121
JBrowse link
G Rexo4 REX4 homolog, 3'-5' exonuclease involved_in ISO (PMID:21602889) ARUK-UCL PMID:21602889 NCBI chrNW_004955513:2,745,220...2,754,927
Ensembl chrNW_004955513:2,745,842...2,752,792
JBrowse link
DNA catabolic process, exonucleolytic term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Isg20 interferon stimulated exonuclease gene 20 involved_in ISO (PMID:11401564) UniProt PMID:11401564 NCBI chrNW_004955416:16,305,534...16,321,596
Ensembl chrNW_004955416:16,311,499...16,321,102
JBrowse link
G Rexo4 REX4 homolog, 3'-5' exonuclease involved_in ISO (PMID:21602889) ARUK-UCL PMID:21602889 NCBI chrNW_004955513:2,745,220...2,754,927
Ensembl chrNW_004955513:2,745,842...2,752,792
JBrowse link
G Xrn2 5'-3' exoribonuclease 2 involved_in ISO (PMID:15565158) UniProt PMID:15565158 NCBI chrNW_004955415:29,107,060...29,175,374
Ensembl chrNW_004955415:29,107,034...29,175,538
JBrowse link
DNA replication, removal of RNA primer term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dna2 DNA replication helicase/nuclease 2 involved_in ISO (PMID:18995831) UniProt PMID:18995831 NCBI chrNW_004955425:20,664,412...20,705,070
Ensembl chrNW_004955425:20,661,727...20,702,754
JBrowse link
G Fen1 flap structure-specific endonuclease 1 involved_in ISO (PMID:18995831) UniProt PMID:18995831 NCBI chrNW_004955511:5,918,667...5,922,506
Ensembl chrNW_004955511:5,918,667...5,922,506
JBrowse link
dTMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nt5c 5', 3'-nucleotidase, cytosolic involved_in ISO (MGI:55510|PMID:6301357) MGI PMID:6301357 MGI:55510 NCBI chrNW_004955553:2,011,549...2,014,209
Ensembl chrNW_004955553:2,011,738...2,013,443
JBrowse link
G Tymp thymidine phosphorylase involved_in ISO (MGI:2183137|PMID:12077348) MGI PMID:12077348 MGI:2183137 NCBI chrNW_004955413:33,505,424...33,509,095
Ensembl chrNW_004955413:33,505,446...33,508,748
JBrowse link
G Upp1 uridine phosphorylase 1 involved_in ISO (MGI:2183137|PMID:12077348) MGI PMID:12077348 MGI:2183137 NCBI chrNW_004955456:5,365,912...5,385,336
Ensembl chrNW_004955456:5,365,877...5,385,336
JBrowse link
dTTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dctpp1 dCTP pyrophosphatase 1 NOT|involved_in ISO (PMID:24467396) UniProt PMID:24467396 NCBI chrNW_004955493:7,357,204...7,360,034
Ensembl chrNW_004955493:7,357,204...7,360,034
JBrowse link
dUMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nt5c 5', 3'-nucleotidase, cytosolic involved_in ISO (MGI:1353788|PMID:10681516) MGI PMID:10681516 MGI:1353788 NCBI chrNW_004955553:2,011,549...2,014,209
Ensembl chrNW_004955553:2,011,738...2,013,443
JBrowse link
G Nt5m 5',3'-nucleotidase, mitochondrial acts_upstream_of_or_within ISO (MGI:2388903|PMID:12234672) MGI PMID:12234672 MGI:2388903 NCBI chrNW_004955577:582,206...608,614 JBrowse link
G Upp1 uridine phosphorylase 1 involved_in ISO (MGI:6478539|PMID:14154460) MGI PMID:14154460 MGI:6478539 NCBI chrNW_004955456:5,365,912...5,385,336
Ensembl chrNW_004955456:5,365,877...5,385,336
JBrowse link
dUTP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dut deoxyuridine triphosphatase ISO RGD PMID:1315924 PMID:3032103 RGD:2300191 RGD:2301218 NCBI chrNW_004955409:5,574,810...5,584,135
Ensembl chrNW_004955409:5,574,694...5,584,134
JBrowse link
exonucleolytic catabolism of deadenylated mRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnot6 CCR4-NOT transcription complex subunit 6 involved_in ISO (PMID:20065043) UniProt PMID:20065043 NCBI chrNW_004955408:170,399...239,492
Ensembl chrNW_004955408:170,399...218,040
JBrowse link
G Cnot7 CCR4-NOT transcription complex subunit 7 involved_in ISO (PMID:20065043), (PMID:21336257) UniProt PMID:20065043 PMID:21336257 NCBI chrNW_004955463:285,228...306,077
Ensembl chrNW_004955463:285,228...306,077
JBrowse link
G Cnot8 CCR4-NOT transcription complex subunit 8 involved_in ISO (PMID:20065043) UniProt PMID:20065043 NCBI chrNW_004955408:9,112,208...9,132,650
Ensembl chrNW_004955408:9,112,208...9,132,758
JBrowse link
G Exosc3 exosome component 3 involved_in ISO (PMID:11782436) UniProt PMID:11782436 NCBI chrNW_004955419:28,683,896...28,692,006
Ensembl chrNW_004955419:28,683,896...28,693,395
JBrowse link
G Exosc5 exosome component 5 involved_in ISO (PMID:11782436) UniProt PMID:11782436 NCBI chrNW_004955555:328,130...334,106
Ensembl chrNW_004955555:326,698...334,106
JBrowse link
G Exosc9 exosome component 9 involved_in ISO (PMID:11782436) UniProt PMID:11782436 NCBI chrNW_004955428:18,732,733...18,743,743
Ensembl chrNW_004955428:18,731,919...18,743,756
JBrowse link
fatty-acyl-CoA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fitm2 fat storage inducing transmembrane protein 2 involved_in ISO (PMID:32915949) UniProt PMID:32915949 NCBI chrNW_004955445:13,027,431...13,032,089 JBrowse link
flavin adenine dinucleotide catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Vcp valosin containing protein involved_in ISO (PMID:23498975) ParkinsonsUK-UCL PMID:23498975 NCBI chrNW_004955472:1,111,649...1,124,076
Ensembl chrNW_004955472:1,107,164...1,124,076
JBrowse link
folic acid catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mthfs methenyltetrahydrofolate synthetase involved_in ISO (PMID:12764149) BHF-UCL PMID:12764149 NCBI chrNW_004955533:720,255...756,893 JBrowse link
GDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd4 ectonucleoside triphosphate diphosphohydrolase 4 involved_in ISO (PMID:10858452) UniProt PMID:10858452 NCBI chrNW_004955403:46,609,211...46,637,622
Ensembl chrNW_004955403:46,609,211...46,637,643
JBrowse link
G Nudt18 nudix hydrolase 18 involved_in ISO (PMID:22556419) UniProt PMID:22556419 NCBI chrNW_004955403:45,598,813...45,601,940 JBrowse link
GMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Gda guanine deaminase involved_in ISO (MGI:6478860|PMID:8064675) MGI PMID:8064675 MGI:6478860 NCBI chrNW_004955434:983,388...1,050,413
Ensembl chrNW_004955434:983,388...1,049,948
JBrowse link
G Hprt1 hypoxanthine phosphoribosyltransferase 1 involved_in ISO (PMID:19527031) UniProt PMID:19527031 NCBI chrNW_004955473:462,940...510,006 JBrowse link
G Prtfdc1 phosphoribosyl transferase domain containing 1 NOT|involved_in ISO (PMID:21054786) UniProt PMID:21054786 NCBI chrNW_004955429:4,234,806...4,325,896 JBrowse link
heme catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Blvra biliverdin reductase A involved_in ISO (PMID:10858451) UniProt PMID:10858451 NCBI chrNW_004955460:129,077...167,345
Ensembl chrNW_004955460:125,854...167,506
JBrowse link
G Blvrb biliverdin reductase B involved_in ISO (PMID:7929092) UniProt PMID:7929092 NCBI chrNW_004955578:813,834...834,675
Ensembl chrNW_004955578:813,480...838,151
JBrowse link
G Hmox1 heme oxygenase 1 involved_in ISO (PMID:17915953) RGD
BHF-UCL
PMID:15226268 PMID:17915953 RGD:1547877 NCBI chrNW_004955405:43,124,447...43,128,873
Ensembl chrNW_004955405:43,124,510...43,130,979
JBrowse link
heme oxidation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hmox1 heme oxygenase 1 involved_in ISO (PMID:17915953) BHF-UCL PMID:17915953 NCBI chrNW_004955405:43,124,447...43,128,873
Ensembl chrNW_004955405:43,124,510...43,130,979
JBrowse link
histamine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hnmt histamine N-methyltransferase involved_in ISO (PMID:26206890) UniProt PMID:26206890 NCBI chrNW_004955440:5,084,198...5,137,577
Ensembl chrNW_004955440:5,084,081...5,139,348
JBrowse link
histone mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atm ATM serine/threonine kinase involved_in ISO (PMID:16086026) UniProt PMID:16086026 NCBI chrNW_004955412:10,422,753...10,531,406
Ensembl chrNW_004955412:10,426,135...10,530,545
JBrowse link
G Dcp2 decapping mRNA 2 involved_in ISO (PMID:18172165) UniProt PMID:18172165 NCBI chrNW_004955408:32,868,184...32,923,788
Ensembl chrNW_004955408:32,868,184...32,916,807
JBrowse link
G Eri1 exoribonuclease 1 NOT|involved_in ISO (PMID:18172165) UniProt PMID:18172165 NCBI chrNW_004955463:5,074,921...5,104,341
Ensembl chrNW_004955463:5,075,105...5,102,892
JBrowse link
G Exosc10 exosome component 10 involved_in ISO (PMID:18172165) UniProt PMID:18172165 NCBI chrNW_004955486:2,601,362...2,626,451
Ensembl chrNW_004955486:2,601,322...2,626,876
JBrowse link
G Exosc4 exosome component 4 involved_in ISO (PMID:18172165) UniProt PMID:18172165 NCBI chrNW_004955454:2,732,308...2,734,398
Ensembl chrNW_004955454:2,732,308...2,734,398
JBrowse link
G Lsm1 LSM1 homolog, mRNA degradation associated involved_in ISO (PMID:18172165) UniProt PMID:18172165 NCBI chrNW_004955463:13,775,639...13,788,784
Ensembl chrNW_004955463:13,773,869...13,788,784
JBrowse link
G Mtpap mitochondrial poly(A) polymerase involved_in ISO (PMID:18172165) UniProt PMID:18172165 NCBI chrNW_004955429:21,768,011...21,792,481
Ensembl chrNW_004955429:21,767,547...21,794,885
JBrowse link
G Tent2 terminal nucleotidyltransferase 2 involved_in ISO (PMID:18172165) UniProt PMID:18172165 NCBI chrNW_004955425:21,518,154...21,576,068
Ensembl chrNW_004955425:21,517,755...21,576,068
JBrowse link
G Tent4b terminal nucleotidyltransferase 4B involved_in ISO (PMID:18172165) UniProt PMID:18172165 NCBI chrNW_004955433:8,288,432...8,347,347
Ensembl chrNW_004955433:8,288,432...8,347,347
JBrowse link
G Tut1 terminal uridylyl transferase 1, U6 snRNA-specific NOT|involved_in ISO (PMID:18172165) UniProt PMID:18172165 NCBI chrNW_004955599:596,565...606,498 JBrowse link
G Tut4 terminal uridylyl transferase 4 NOT|involved_in ISO (PMID:18172165) UniProt PMID:18172165 NCBI chrNW_004955464:6,610,350...6,734,606
Ensembl chrNW_004955464:6,646,245...6,734,066
JBrowse link
G Tut7 terminal uridylyl transferase 7 NOT|involved_in ISO (PMID:18172165) UniProt PMID:18172165 NCBI chrNW_004955432:1,268,217...1,330,385
Ensembl chrNW_004955432:1,268,103...1,329,436
JBrowse link
G Upf1 UPF1 RNA helicase and ATPase involved_in ISO (PMID:16086026) UniProt PMID:16086026 NCBI chrNW_004955524:2,798,336...2,814,063
Ensembl chrNW_004955524:2,798,336...2,913,176
JBrowse link
G Xrn1 5'-3' exoribonuclease 1 involved_in ISO (PMID:18172165) UniProt PMID:18172165 NCBI chrNW_004955508:3,441,540...3,561,896
Ensembl chrNW_004955508:3,441,683...3,561,805
JBrowse link
IDP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt16 nudix hydrolase 16 involved_in ISO (PMID:20385596) UniProt PMID:20385596 NCBI chrNW_004955501:7,083,068...7,085,505 JBrowse link
G Nudt9 nudix hydrolase 9 acts_upstream_of_or_within ISO (MGI:2158549|PMID:11825615) MGI PMID:11825615 MGI:2158549 NCBI chrNW_004955474:2,402,400...2,438,145
Ensembl chrNW_004955474:2,397,665...2,438,048
JBrowse link
IMP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nt5c 5', 3'-nucleotidase, cytosolic involved_in ISO (MGI:55510|PMID:6301357) MGI PMID:6301357 MGI:55510 NCBI chrNW_004955553:2,011,549...2,014,209
Ensembl chrNW_004955553:2,011,738...2,013,443
JBrowse link
G Nt5c1a 5'-nucleotidase, cytosolic IA involved_in ISO (PMID:11133996) MGI PMID:11133996 NCBI chrNW_004955452:17,172,217...17,188,597
Ensembl chrNW_004955452:17,172,217...17,188,756
JBrowse link
G Nt5c2 5'-nucleotidase, cytosolic II involved_in ISO (PMID:21873433) MGI PMID:21873433 NCBI chrNW_004955485:7,318,006...7,394,448
Ensembl chrNW_004955485:7,317,588...7,394,448
JBrowse link
G Pnp purine nucleoside phosphorylase involved_in ISO (PMID:6771276) MGI PMID:6771276 NCBI chrNW_004955550:1,290,816...1,299,553
Ensembl chrNW_004955550:1,290,244...1,298,068
JBrowse link
inosine catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pnp purine nucleoside phosphorylase involved_in
acts_upstream_of_or_within
ISO (PMID:23438750)
(PMID:16964310)
UniProt
MGI
PMID:16964310 PMID:23438750 NCBI chrNW_004955550:1,290,816...1,299,553
Ensembl chrNW_004955550:1,290,244...1,298,068
JBrowse link
ITP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Itpa inosine triphosphatase acts_upstream_of_or_within ISO (MGI:5009783|PMID:20081199) MGI PMID:20081199 MGI:5009783 NCBI chrNW_004955415:14,106,786...14,121,975
Ensembl chrNW_004955415:14,107,380...14,121,619
JBrowse link
long-chain fatty-acyl-CoA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acot7 acyl-CoA thioesterase 7 involved_in ISO (PMID:10578051) BHF-UCL PMID:10578051 NCBI chrNW_004955486:6,188,102...6,258,230
Ensembl chrNW_004955486:6,188,102...6,259,110
JBrowse link
medium-chain fatty-acyl-CoA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Acot7 acyl-CoA thioesterase 7 involved_in ISO (PMID:10578051) BHF-UCL PMID:10578051 NCBI chrNW_004955486:6,188,102...6,258,230
Ensembl chrNW_004955486:6,188,102...6,259,110
JBrowse link
G Nudt7 nudix hydrolase 7 involved_in ISO (MGI:6450264|PMID:18799520) UniProt PMID:18799520 MGI:6450264 NCBI chrNW_004955522:945,186...960,094
Ensembl chrNW_004955522:944,565...960,244
JBrowse link
miRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dis3l2 DIS3 like 3'-5' exoribonuclease 2 involved_in ISO (PMID:24141620)
(MGI:5603455|PMID:25119025)
(MGI:5494337|PMID:23594738)
UniProt PMID:23594738 PMID:24141620 PMID:25119025 MGI:5494337 MGI:5603455 NCBI chrNW_004955453:3,558,744...3,851,222
Ensembl chrNW_004955453:3,559,067...3,830,064
JBrowse link
G Lin28a lin-28 homolog A involved_in ISO (PMID:18951094), (PMID:19703396)
(MGI:4359358|PMID:18604195), (MGI:4359360|PMID:18292307)
UniProt PMID:18292307 PMID:18604195 PMID:18951094 PMID:19703396 MGI:4359358 MGI:4359360 NCBI chrNW_004955452:5,793,583...5,808,662
Ensembl chrNW_004955452:5,793,583...5,808,662
JBrowse link
G Lin28b lin-28 homolog B involved_in ISO (PMID:19703396) UniProt PMID:19703396 NCBI chrNW_004955411:30,381,208...30,499,678 JBrowse link
G Parn poly(A)-specific ribonuclease involved_in ISO (PMID:25049417) UniProt PMID:25049417 NCBI chrNW_004955442:4,255,726...4,421,083
Ensembl chrNW_004955442:4,258,692...4,422,197
JBrowse link
G Snd1 staphylococcal nuclease and tudor domain containing 1 involved_in ISO (PMID:28546213) UniProt PMID:28546213 NCBI chrNW_004955479:8,692,674...9,124,504
Ensembl chrNW_004955479:8,692,674...9,154,272
JBrowse link
G Tent4b terminal nucleotidyltransferase 4B involved_in ISO (PMID:25049417) UniProt PMID:25049417 NCBI chrNW_004955433:8,288,432...8,347,347
Ensembl chrNW_004955433:8,288,432...8,347,347
JBrowse link
G Tut4 terminal uridylyl transferase 4 involved_in ISO (PMID:19703396) UniProt PMID:19703396 NCBI chrNW_004955464:6,610,350...6,734,606
Ensembl chrNW_004955464:6,646,245...6,734,066
JBrowse link
mitochondrial mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pde12 phosphodiesterase 12 involved_in ISO (PMID:21245038), (PMID:21666256) UniProt PMID:21245038 PMID:21666256 NCBI chrNW_004955430:7,272,911...7,277,726
Ensembl chrNW_004955430:7,272,765...7,277,726
JBrowse link
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 involved_in ISO (PMID:20691904)
(MGI:4881376|PMID:20691904)
UniProt PMID:20691904 MGI:4881376 NCBI chrNW_004955424:27,407,451...27,449,830
Ensembl chrNW_004955424:27,407,489...27,448,992
JBrowse link
G Supv3l1 Suv3 like RNA helicase involved_in ISO (PMID:19864255) UniProt PMID:19864255 NCBI chrNW_004955437:21,880,778...21,905,540
Ensembl chrNW_004955437:21,877,666...21,906,362
JBrowse link
mitochondrial mRNA surveillance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Supv3l1 Suv3 like RNA helicase involved_in ISO (PMID:19864255) UniProt PMID:19864255 NCBI chrNW_004955437:21,880,778...21,905,540
Ensembl chrNW_004955437:21,877,666...21,906,362
JBrowse link
mitochondrial ncRNA surveillance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Supv3l1 Suv3 like RNA helicase involved_in ISO (PMID:19864255) UniProt PMID:19864255 NCBI chrNW_004955437:21,880,778...21,905,540
Ensembl chrNW_004955437:21,877,666...21,906,362
JBrowse link
mitochondrial RNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 involved_in ISO (PMID:18501193) UniProt PMID:18501193 NCBI chrNW_004955424:27,407,451...27,449,830
Ensembl chrNW_004955424:27,407,489...27,448,992
JBrowse link
mitochondrial RNA surveillance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Supv3l1 Suv3 like RNA helicase involved_in ISO (PMID:19864255) UniProt PMID:19864255 NCBI chrNW_004955437:21,880,778...21,905,540
Ensembl chrNW_004955437:21,877,666...21,906,362
JBrowse link
mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ago3 argonaute RISC catalytic component 3 involved_in ISO (PMID:18771919) UniProt PMID:18771919 NCBI chrNW_004955452:13,977,487...14,108,729
Ensembl chrNW_004955452:13,977,481...14,094,259
JBrowse link
G Ago4 argonaute RISC component 4 involved_in ISO (PMID:18771919) UniProt PMID:18771919 NCBI chrNW_004955452:13,882,416...13,922,590
Ensembl chrNW_004955452:13,882,416...13,922,590
JBrowse link
G Dcp2 decapping mRNA 2 involved_in ISO (PMID:21070968), (PMID:28002401)
(MGI:4849882|PMID:21070968)
UniProt PMID:21070968 PMID:28002401 MGI:4849882 NCBI chrNW_004955408:32,868,184...32,923,788
Ensembl chrNW_004955408:32,868,184...32,916,807
JBrowse link
G Dxo decapping exoribonuclease involved_in ISO (PMID:29601584)
(MGI:5488528|PMID:23523372)
(MGI:6368104|PMID:28283058)
UniProt PMID:23523372 PMID:28283058 PMID:29601584 MGI:5488528 MGI:6368104 NCBI chrNW_004955437:482,866...484,989
Ensembl chrNW_004955437:481,554...484,989
JBrowse link
G Khsrp KH-type splicing regulatory protein acts_upstream_of_or_within ISO (MGI:5439239|PMID:22844247) MGI PMID:22844247 MGI:5439239 NCBI chrNW_004955495:3,183,083...3,194,356
Ensembl chrNW_004955495:3,183,179...3,193,376
JBrowse link
G Lsm2 LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated acts_upstream_of_or_within ISO (PMID:12515382) MGI PMID:12515382 NCBI chrNW_004955437:321,367...325,556
Ensembl chrNW_004955437:320,768...325,810
JBrowse link
G Lsm5 LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated acts_upstream_of_or_within ISO (PMID:12515382) MGI PMID:12515382 NCBI chrNW_004955617:42,829...47,999 JBrowse link
G Lsm6 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated acts_upstream_of_or_within ISO (PMID:12515382) MGI PMID:12515382 NCBI chrNW_004955428:1,931,684...1,944,445
Ensembl chrNW_004955428:1,930,937...1,946,246
JBrowse link
G Mettl14 methyltransferase like 14 involved_in ISO (MGI:5927282|PMID:28965759) UniProt PMID:28965759 MGI:5927282 NCBI chrNW_004955428:21,475,981...21,507,730
Ensembl chrNW_004955428:21,475,981...21,507,730
JBrowse link
G Mettl16 methyltransferase like 16 involved_in ISO (MGI:6114846|PMID:29262316) UniProt PMID:29262316 MGI:6114846 NCBI chrNW_004955481:762,030...836,299
Ensembl chrNW_004955481:762,024...836,067
JBrowse link
G Mettl3 methyltransferase like 3 involved_in ISO (MGI:5927282|PMID:28965759), (MGI:6094929|PMID:28792938), (MGI:6095345|PMID:28637692) UniProt PMID:28637692 PMID:28792938 PMID:28965759 MGI:5927282 MGI:6094929 MGI:6095345 NCBI chrNW_004955550:2,211,270...2,227,715
Ensembl chrNW_004955550:2,211,270...2,227,715
JBrowse link
G Nanos2 nanos C2HC-type zinc finger 2 involved_in ISO (MGI:4431145|PMID:20133598) UniProt PMID:20133598 MGI:4431145 NCBI chrNW_004955574:333,007...333,529
Ensembl chrNW_004955574:333,116...333,529
JBrowse link
G Nudt12 nudix hydrolase 12 involved_in ISO (MGI:6368680|PMID:31101919) UniProt PMID:31101919 MGI:6368680 NCBI chrNW_004955418:10,459,644...10,474,124
Ensembl chrNW_004955418:10,459,638...10,474,124
JBrowse link
G Nudt16 nudix hydrolase 16 involved_in ISO (PMID:21070968), (PMID:21337011)
(MGI:4849882|PMID:21070968)
UniProt PMID:21070968 PMID:21337011 MGI:4849882 NCBI chrNW_004955501:7,083,068...7,085,505 JBrowse link
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 involved_in ISO (PMID:12721301), (PMID:16055741) UniProt PMID:12721301 PMID:16055741 NCBI chrNW_004955424:27,407,451...27,449,830
Ensembl chrNW_004955424:27,407,489...27,448,992
JBrowse link
G Rida reactive intermediate imine deaminase A homolog involved_in ISO (PMID:30930054) UniProt PMID:30930054 NCBI chrNW_004955417:13,810,596...13,822,982
Ensembl chrNW_004955417:13,810,596...13,822,982
JBrowse link
G Slfn14 schlafen family member 14 involved_in ISO (PMID:25996083)
(MGI:5705207|PMID:25996083)
UniProt PMID:25996083 MGI:5705207 NCBI chrNW_004955481:10,037,941...10,046,549
Ensembl chrNW_004955481:10,037,941...10,046,549
JBrowse link
G Ythdf2 YTH N6-methyladenosine RNA binding protein 2 involved_in ISO (PMID:27558897), (PMID:30559377), (PMID:30930054)
(MGI:6316439|PMID:29855337), (MGI:6316688|PMID:30065315), (MGI:6317061|PMID:30150673)
UniProt PMID:27558897 PMID:29855337 PMID:30065315 PMID:30150673 PMID:30559377 PMID:30930054 MGI:6316439 MGI:6316688 MGI:6317061 NCBI chrNW_004955452:7,783,398...7,815,468 JBrowse link
G Zc3h12d zinc finger CCCH-type containing 12D acts_upstream_of_or_within ISO (MGI:5567042|PMID:24415781) MGI PMID:24415781 MGI:5567042 NCBI chrNW_004955439:11,761,099...11,787,508
Ensembl chrNW_004955439:11,768,812...11,785,230
JBrowse link
G Zfp36 ZFP36 ring finger protein involved_in
acts_upstream_of_or_within
ISO (PMID:10330172), (PMID:20221403)
(PMID:10751406), (PMID:11782475)
UniProt
MGI
PMID:10330172 PMID:10751406 PMID:11782475 PMID:20221403 NCBI chrNW_004955468:152,744...155,140
Ensembl chrNW_004955468:152,744...155,140
JBrowse link
G Zfp36l2 ZFP36 ring finger protein like 2 involved_in ISO (MGI:5320815|PMID:22367205) UniProt PMID:22367205 MGI:5320815 NCBI chrNW_004955441:10,467,608...10,469,885 JBrowse link
G Zhx2 zinc fingers and homeoboxes 2 acts_upstream_of_or_within ISO (MGI:49288|PMID:1370712) MGI PMID:1370712 MGI:49288 NCBI chrNW_004955540:1,805,648...1,890,409
Ensembl chrNW_004955540:1,805,666...1,890,409
JBrowse link
mRNA destabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Celf1 CUGBP Elav-like family member 1 involved_in ISO PMID:30508596 ARUK-UCL PMID:30508596 RGD:38501076 NCBI chrNW_004955422:742,017...817,649
Ensembl chrNW_004955422:742,017...817,647
JBrowse link
G Cnot6l CCR4-NOT transcription complex subunit 6 like acts_upstream_of_or_within ISO (MGI:3828348|PMID:17452450) MGI PMID:17452450 MGI:3828348 NCBI chrNW_004955433:2,206,462...2,290,773
Ensembl chrNW_004955433:2,213,444...2,316,049
JBrowse link
G Fto FTO alpha-ketoglutarate dependent dioxygenase involved_in ISO (PMID:28002401), (PMID:30197295) UniProt PMID:28002401 PMID:30197295 NCBI chrNW_004955433:11,424,069...11,834,955
Ensembl chrNW_004955433:11,424,176...11,813,771
JBrowse link
G Gigyf2 GRB10 interacting GYF protein 2 involved_in ISO (PMID:27157137) ParkinsonsUK-UCL PMID:27157137 NCBI chrNW_004955453:3,201,593...3,301,541
Ensembl chrNW_004955453:3,203,358...3,301,547
JBrowse link
G Hnrnpr heterogeneous nuclear ribonucleoprotein R ISO RGD PMID:15798208 RGD:9854643 NCBI chrNW_004955452:3,318,536...3,354,725
Ensembl chrNW_004955452:3,315,133...3,355,508
JBrowse link
G Mettl14 methyltransferase like 14 involved_in ISO (MGI:5559905|PMID:24394384), (MGI:5927282|PMID:28965759) UniProt PMID:24394384 PMID:28965759 MGI:5559905 MGI:5927282 NCBI chrNW_004955428:21,475,981...21,507,730
Ensembl chrNW_004955428:21,475,981...21,507,730
JBrowse link
G Mettl16 methyltransferase like 16 involved_in ISO (MGI:6114846|PMID:29262316) UniProt PMID:29262316 MGI:6114846 NCBI chrNW_004955481:762,030...836,299
Ensembl chrNW_004955481:762,024...836,067
JBrowse link
G Mettl3 methyltransferase like 3 involved_in ISO (MGI:5559905|PMID:24394384), (MGI:5621227|PMID:25569111), (MGI:5621254|PMID:25456834), (MGI:5927282|PMID:28965759), (MGI:6094929|PMID:28792938), (MGI:6095345|PMID:28637692) UniProt PMID:24394384 PMID:25456834 PMID:25569111 PMID:28637692 PMID:28792938 PMID:28965759 MGI:5559905 MGI:5621227 MGI:5621254 MGI:5927282 MGI:6094929 MGI:6095345 NCBI chrNW_004955550:2,211,270...2,227,715
Ensembl chrNW_004955550:2,211,270...2,227,715
JBrowse link
G Pum1 pumilio RNA binding family member 1 involved_in ISO (MGI:5640888|PMID:25768905) UniProt PMID:25768905 MGI:5640888 NCBI chrNW_004955452:9,487,725...9,623,565
Ensembl chrNW_004955452:9,487,725...9,624,066
JBrowse link
G Rbm24 RNA binding motif protein 24 involved_in ISO (PMID:29104163) UniProt PMID:29104163 NCBI chrNW_004955483:8,705,533...8,716,772
Ensembl chrNW_004955483:8,705,213...8,716,778
JBrowse link
G Rida reactive intermediate imine deaminase A homolog involved_in ISO (PMID:30930054) UniProt PMID:30930054 NCBI chrNW_004955417:13,810,596...13,822,982
Ensembl chrNW_004955417:13,810,596...13,822,982
JBrowse link
G Rock1 Rho associated coiled-coil containing protein kinase 1 involved_in ISO (MGI:6271078|PMID:29353861) ARUK-UCL PMID:29353861 MGI:6271078 NCBI chrNW_004955402:9,752,101...9,864,317
Ensembl chrNW_004955402:9,750,730...9,864,317
JBrowse link
G Rock2 Rho associated coiled-coil containing protein kinase 2 involved_in ISO (MGI:6271078|PMID:29353861) ARUK-UCL PMID:29353861 MGI:6271078 NCBI chrNW_004955487:5,856,190...5,972,408
Ensembl chrNW_004955487:5,859,204...5,972,401
JBrowse link
G Ythdf1 YTH N6-methyladenosine RNA binding protein 1 involved_in ISO (PMID:32492408)
(MGI:6490006|PMID:32943573)
UniProt PMID:32492408 PMID:32943573 MGI:6490006 NCBI chrNW_004955528:935,182...951,722
Ensembl chrNW_004955528:935,182...951,722
JBrowse link
G Ythdf2 YTH N6-methyladenosine RNA binding protein 2 involved_in ISO (PMID:27558897), (PMID:30559377), (PMID:30930054), (PMID:32492408)
(MGI:6316439|PMID:29855337), (MGI:6316688|PMID:30065315), (MGI:6317061|PMID:30150673), (MGI:6490006|PMID:32943573), (MGI:6508516|PMID:31959747)
(PMID:28106072), (PMID:32169943)
UniProt PMID:27558897 PMID:28106072 PMID:29855337 PMID:30065315 PMID:30150673 PMID:30559377 PMID:30930054 PMID:31959747 PMID:32169943 PMID:32492408 PMID:32943573 MGI:6316439 MGI:6316688 MGI:6317061 MGI:6490006 MGI:6508516 NCBI chrNW_004955452:7,783,398...7,815,468 JBrowse link
G Ythdf3 YTH N6-methyladenosine RNA binding protein 3 involved_in ISO (PMID:32492408)
(MGI:6490006|PMID:32943573)
(PMID:28106072)
UniProt PMID:28106072 PMID:32492408 PMID:32943573 MGI:6490006 NCBI chrNW_004955444:15,758,596...15,789,979
Ensembl chrNW_004955444:15,758,596...15,789,979
JBrowse link
mRNA stabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Apobec1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 acts_upstream_of_or_within ISO (MGI:3057047|PMID:15480992) MGI PMID:15480992 MGI:3057047 NCBI chrNW_004955413:6,471,933...6,480,475
Ensembl chrNW_004955413:6,471,953...6,480,469
JBrowse link
G Axin2 axin 2 involved_in ISO (PMID:17072303) BHF-UCL PMID:17072303 NCBI chrNW_004955478:4,952,551...4,982,223
Ensembl chrNW_004955478:4,952,488...4,982,225
JBrowse link
G Cirbp cold inducible RNA binding protein involved_in ISO (PMID:11574538) UniProt PMID:11574538 NCBI chrNW_004955495:6,634,389...6,640,800
Ensembl chrNW_004955495:6,634,394...6,640,800
JBrowse link
G Dicer1 dicer 1, ribonuclease III acts_upstream_of_or_within ISO (MGI:5439239|PMID:22844247) MGI PMID:22844247 MGI:5439239 NCBI chrNW_004955438:17,374,899...17,431,599
Ensembl chrNW_004955438:17,382,493...17,431,797
JBrowse link
G E2f1 E2F transcription factor 1 involved_in ISO (PMID:15766563) BHF-UCL PMID:15766563 NCBI chrNW_004955422:27,638,625...27,643,261
Ensembl chrNW_004955422:27,633,827...27,642,241
JBrowse link
G Eif4enif1 eukaryotic translation initiation factor 4E nuclear import factor 1 involved_in ISO (PMID:24335285), (PMID:32354837) UniProt PMID:24335285 PMID:32354837 NCBI chrNW_004955455:5,612,087...5,660,543
Ensembl chrNW_004955455:5,611,093...5,660,104
JBrowse link
G Elavl1 ELAV like RNA binding protein 1 involved_in
acts_upstream_of_or_within
ISO (PMID:19029303)
(PMID:21613615)
(PMID:31358969)
(MGI:3037407|PMID:14976220), (MGI:5287957|PMID:21613615)
(MGI:5922838|PMID:27609837)
(MGI:5559905|PMID:24394384)
UniProt
MGI
CACAO
PMID:14976220 PMID:19029303 PMID:21613615 PMID:24394384 PMID:27609837 PMID:31358969 MGI:3037407 MGI:5287957 MGI:5559905 MGI:5922838 NCBI chrNW_004955563:1,283,424...1,315,283
Ensembl chrNW_004955563:1,283,421...1,315,283
JBrowse link
G Gdnf glial cell derived neurotrophic factor involved_in ISO (PMID:12358785) BHF-UCL PMID:12358785 NCBI chrNW_004955426:22,386,613...22,412,324
Ensembl chrNW_004955426:22,386,450...22,412,324
JBrowse link
G Hnrnpd heterogeneous nuclear ribonucleoprotein D ISO RGD PMID:15192077 RGD:1357938 NCBI chrNW_004955433:6,452,931...6,470,209
Ensembl chrNW_004955433:6,454,454...6,469,904
JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U involved_in ISO (PMID:17174306) UniProt PMID:17174306 NCBI chrNW_004955406:8,000,269...8,021,554
Ensembl chrNW_004955406:8,000,269...8,021,554
JBrowse link
G Ikbke inhibitor of nuclear factor kappa B kinase subunit epsilon involved_in ISO (MGI:5291883|PMID:21822257) MGI PMID:21822257 MGI:5291883 NCBI chrNW_004955406:42,056,014...42,077,701
Ensembl chrNW_004955406:42,056,014...42,077,701
JBrowse link
G Larp1 La ribonucleoprotein 1, translational regulator involved_in ISO (PMID:25940091), (PMID:28673543) UniProt PMID:25940091 PMID:28673543 NCBI chrNW_004955408:9,002,443...9,080,938
Ensembl chrNW_004955408:9,002,458...9,080,938
JBrowse link
G Mapkapk2 MAPK activated protein kinase 2 acts_upstream_of_or_within ISO (MGI:2158083|PMID:11741878) MGI PMID:11741878 MGI:2158083 NCBI chrNW_004955406:42,231,858...42,276,477
Ensembl chrNW_004955406:42,231,858...42,276,477
JBrowse link
G Meioc meiosis specific with coiled-coil domain involved_in ISO (MGI:5770021|PMID:26742488) UniProt PMID:26742488 MGI:5770021 NCBI chrNW_004955451:17,534,644...17,547,095
Ensembl chrNW_004955451:17,534,659...17,545,584
JBrowse link
G Mtor mechanistic target of rapamycin kinase ISO RGD PMID:21073857 RGD:10040969 NCBI chrNW_004955486:2,487,642...2,599,694
Ensembl chrNW_004955486:2,487,642...2,599,694
JBrowse link
G Noct nocturnin involved_in ISO (MGI:5308514|PMID:22073225) UniProt PMID:22073225 MGI:5308514 NCBI chrNW_004955428:4,559,027...4,580,013 JBrowse link
G Qki QKI, KH domain containing RNA binding ISO RGD PMID:16855020 RGD:10045995 NCBI chrNW_004955439:17,925,205...18,079,727 JBrowse link
G Rbm24 RNA binding motif protein 24 involved_in ISO (PMID:29104163) UniProt PMID:29104163 NCBI chrNW_004955483:8,705,533...8,716,772
Ensembl chrNW_004955483:8,705,213...8,716,778
JBrowse link
G Rbm46 RNA binding motif protein 46 acts_upstream_of_or_within ISO (MGI:5644240|PMID:25397698) MGI PMID:25397698 MGI:5644240 NCBI chrNW_004955471:12,096,400...12,167,536 JBrowse link
G Slc11a1 solute carrier family 11 member 1 acts_upstream_of_or_within ISO (MGI:85148|PMID:9009318) MGI PMID:9009318 MGI:85148 NCBI chrNW_004955453:14,980,562...14,995,118
Ensembl chrNW_004955453:14,980,562...14,995,608
JBrowse link
G Srsf1 serine and arginine rich splicing factor 1 involved_in ISO (MGI:5291882|PMID:21822258) MGI PMID:21822258 MGI:5291882 NCBI chrNW_004955451:4,992,634...4,996,619
Ensembl chrNW_004955451:4,992,634...4,999,029
JBrowse link
G Taf15 TATA-box binding protein associated factor 15 acts_upstream_of_or_within ISO (PMID:27378374) MGI PMID:27378374 NCBI chrNW_004955481:10,242,839...10,274,961
Ensembl chrNW_004955481:10,252,393...10,274,860
JBrowse link
G Tent5c terminal nucleotidyltransferase 5C involved_in ISO (PMID:28931820)
(MGI:5926094|PMID:28931820)
UniProt PMID:28931820 MGI:5926094 NCBI chrNW_004955435:20,790,410...20,811,730
Ensembl chrNW_004955435:20,792,773...20,811,723
JBrowse link
G Thrap3 thyroid hormone receptor associated protein 3 involved_in ISO (PMID:18794151) UniProt PMID:18794151 NCBI chrNW_004955452:14,233,155...14,282,521
Ensembl chrNW_004955452:14,233,155...14,283,886
JBrowse link
G Traf2 TNF receptor associated factor 2 involved_in ISO (MGI:5291882|PMID:21822258) MGI PMID:21822258 MGI:5291882 NCBI chrNW_004955513:4,964,692...4,984,359
Ensembl chrNW_004955513:4,967,984...4,983,987
JBrowse link
G Traf3ip2 TRAF3 interacting protein 2 involved_in ISO (MGI:5291882|PMID:21822258)
(MGI:4355787|PMID:17785852)
MGI PMID:17785852 PMID:21822258 MGI:4355787 MGI:5291882 NCBI chrNW_004955411:36,328,152...36,363,614
Ensembl chrNW_004955411:36,326,926...36,363,288
JBrowse link
G Traf5 TNF receptor associated factor 5 involved_in ISO (MGI:5291882|PMID:21822258) MGI PMID:21822258 MGI:5291882 NCBI chrNW_004955489:935,601...995,162
Ensembl chrNW_004955489:949,890...995,162
JBrowse link
G Vegfa vascular endothelial growth factor A ISO RGD PMID:12881220 RGD:1580563 NCBI chrNW_004955437:9,527,445...9,541,908 JBrowse link
G Ybx1 Y-box binding protein 1 involved_in ISO (PMID:31358969) UniProt PMID:31358969 NCBI chrNW_004955537:2,234,052...2,254,528
Ensembl chrNW_004955537:2,234,054...2,251,708
JBrowse link
G Ybx2 Y-box binding protein 2 acts_upstream_of_or_within ISO (MGI:3696301|PMID:17035640) MGI PMID:17035640 MGI:3696301 NCBI chrNW_004955467:9,624,506...9,629,904
Ensembl chrNW_004955467:9,624,019...9,629,904
JBrowse link
NAD catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt12 nudix hydrolase 12 involved_in
acts_upstream_of_or_within
ISO (PMID:12790796) MGI PMID:12790796 NCBI chrNW_004955418:10,459,644...10,474,124
Ensembl chrNW_004955418:10,459,638...10,474,124
JBrowse link
G Sarm1 sterile alpha and TIR motif containing 1 involved_in ISO (PMID:25908823), (PMID:27671644), (PMID:28334607), (PMID:31128467), (PMID:31439792), (PMID:31439793), (PMID:32049506), (PMID:32828421), (PMID:33053563)
(MGI:6206974|PMID:27735788), (MGI:6508517|PMID:32312889)
(MGI:6114587|PMID:28334607)
UniProt PMID:25908823 PMID:27671644 PMID:27735788 PMID:28334607 PMID:31128467 PMID:31439792 PMID:31439793 PMID:32049506 PMID:32312889 PMID:32828421 PMID:33053563 MGI:6114587 MGI:6206974 MGI:6508517 NCBI chrNW_004955481:4,743,458...4,763,766
Ensembl chrNW_004955481:4,743,458...4,763,766
JBrowse link
NADP catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt12 nudix hydrolase 12 involved_in
acts_upstream_of_or_within
ISO (PMID:12790796) MGI PMID:12790796 NCBI chrNW_004955418:10,459,644...10,474,124
Ensembl chrNW_004955418:10,459,638...10,474,124
JBrowse link
G Nudt13 nudix hydrolase 13 involved_in ISO (MGI:6368098|PMID:28755312) UniProt PMID:28755312 MGI:6368098 NCBI chrNW_004955437:18,572,172...18,591,972
Ensembl chrNW_004955437:18,572,416...18,592,279
JBrowse link
ncRNA polyadenylation involved in polyadenylation-dependent ncRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tent4b terminal nucleotidyltransferase 4B involved_in ISO (PMID:26950371) BHF-UCL PMID:26950371 NCBI chrNW_004955433:8,288,432...8,347,347
Ensembl chrNW_004955433:8,288,432...8,347,347
JBrowse link
negative regulation of 3'-UTR-mediated mRNA stabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mettl16 methyltransferase like 16 involved_in ISO (PMID:28525753) UniProt PMID:28525753 NCBI chrNW_004955481:762,030...836,299
Ensembl chrNW_004955481:762,024...836,067
JBrowse link
negative regulation of apoptotic DNA fragmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dffa DNA fragmentation factor subunit alpha acts_upstream_of_or_within ISO (MGI:2182584|PMID:10601318), (MGI:3029597|PMID:14663139)
(PMID:15572351)
MGI PMID:10601318 PMID:14663139 PMID:15572351 MGI:2182584 MGI:3029597 NCBI chrNW_004955486:3,273,712...3,274,510 JBrowse link
G Nmnat1 nicotinamide nucleotide adenylyltransferase 1 ISO RGD PMID:27184051 RGD:13781945 NCBI chrNW_004955486:3,637,794...3,655,744
Ensembl chrNW_004955486:3,637,794...3,655,598
JBrowse link
G Pam16 presequence translocase associated motor 16 ISO RGD PMID:24069394 RGD:13462066 NCBI chrNW_004955442:13,087,082...13,097,048
Ensembl chrNW_004955442:13,087,092...13,097,048
JBrowse link
negative regulation of deadenylation-dependent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Eif4enif1 eukaryotic translation initiation factor 4E nuclear import factor 1 involved_in ISO (PMID:32354837) UniProt PMID:32354837 NCBI chrNW_004955455:5,612,087...5,660,543
Ensembl chrNW_004955455:5,611,093...5,660,104
JBrowse link
negative regulation of DNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Rgn regucalcin ISO RGD PMID:2001740 RGD:9590215 NCBI chrNW_004955516:958,416...978,829
Ensembl chrNW_004955516:955,680...978,910
JBrowse link
negative regulation of miRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tent2 terminal nucleotidyltransferase 2 involved_in ISO (PMID:23200856) UniProt PMID:23200856 NCBI chrNW_004955425:21,518,154...21,576,068
Ensembl chrNW_004955425:21,517,755...21,576,068
JBrowse link
negative regulation of mitochondrial RNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lrpprc leucine rich pentatricopeptide repeat containing acts_upstream_of_or_within ISO (MGI:5301479|PMID:21880015)
(MGI:5438202|PMID:22045337)
MGI PMID:21880015 PMID:22045337 MGI:5301479 MGI:5438202 NCBI chrNW_004955441:11,012,910...11,116,965 JBrowse link
G Slirp SRA stem-loop interacting RNA binding protein acts_upstream_of_or_within ISO (MGI:5438202|PMID:22045337) MGI PMID:22045337 MGI:5438202 NCBI chrNW_004955438:1,556,462...1,561,561 JBrowse link
negative regulation of mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fmr1 FMRP translational regulator 1 involved_in ISO (PMID:25225333) CAFA PMID:25225333 NCBI chrNW_004955498:566,741...594,837
Ensembl chrNW_004955498:566,688...595,360
JBrowse link
G Pkp1 plakophilin 1 involved_in ISO (PMID:25225333) CAFA PMID:25225333 NCBI chrNW_004955406:37,420,019...37,465,588
Ensembl chrNW_004955406:37,419,856...37,465,655
JBrowse link
G Pkp3 plakophilin 3 involved_in ISO (PMID:25225333) CAFA PMID:25225333 NCBI chrNW_004955476:11,611,240...11,619,210
Ensembl chrNW_004955476:11,611,240...11,619,780
JBrowse link
negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dhx34 DExH-box helicase 34 involved_in ISO (PMID:23828042) UniProt PMID:23828042 NCBI chrNW_004955574:1,248,058...1,267,399
Ensembl chrNW_004955574:1,248,021...1,267,399
JBrowse link
G Nbas NBAS subunit of NRZ tethering complex involved_in ISO (PMID:23828042) UniProt PMID:23828042 NCBI chrNW_004955487:8,894,403...9,073,535
Ensembl chrNW_004955487:8,894,187...9,073,663
JBrowse link
G Pabpc1 poly(A) binding protein cytoplasmic 1 involved_in ISO (PMID:18447585) UniProt PMID:18447585 NCBI chrNW_004955417:15,872,906...15,885,246
Ensembl chrNW_004955417:15,868,934...15,885,247
JBrowse link
G Secisbp2 SECIS binding protein 2 acts_upstream_of_or_within ISO (MGI:5582859|PMID:24274065) MGI PMID:24274065 MGI:5582859 NCBI chrNW_004955515:2,697,370...2,729,425
Ensembl chrNW_004955515:2,698,075...2,730,074
JBrowse link
negative regulation of nuclear-transcribed mRNA poly(A) tail shortening term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tent4a terminal nucleotidyltransferase 4A involved_in ISO (PMID:30026317) UniProt PMID:30026317 NCBI chrNW_004955504:4,443,051...4,476,373
Ensembl chrNW_004955504:4,443,051...4,476,520
JBrowse link
G Tent4b terminal nucleotidyltransferase 4B involved_in ISO (PMID:30026317) UniProt PMID:30026317 NCBI chrNW_004955433:8,288,432...8,347,347
Ensembl chrNW_004955433:8,288,432...8,347,347
JBrowse link
G Tob1 transducer of ERBB2, 1 involved_in ISO (PMID:18377426) UniProt PMID:18377426 NCBI chrNW_004955451:10,950,270...10,963,183 JBrowse link
negative regulation of RNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nrde2 NRDE-2, necessary for RNA interference, domain containing involved_in ISO (PMID:30842217) UniProt PMID:30842217 NCBI chrNW_004955438:12,726,206...12,780,364
Ensembl chrNW_004955438:12,726,357...12,780,379
JBrowse link
nicotinamide riboside catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Mtap methylthioadenosine phosphorylase NOT|involved_in ISO (PMID:19001417) UniProt PMID:19001417 NCBI chrNW_004955472:12,391,399...12,439,221
Ensembl chrNW_004955472:12,390,032...12,439,206
JBrowse link
G Pnp purine nucleoside phosphorylase involved_in ISO (PMID:19001417) UniProt PMID:19001417 NCBI chrNW_004955550:1,290,816...1,299,553
Ensembl chrNW_004955550:1,290,244...1,298,068
JBrowse link
nuclear histone mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ssb small RNA binding exonuclease protection factor La involved_in ISO (PMID:9154801) CAFA PMID:9154801 NCBI chrNW_004955449:4,806,468...4,815,175 JBrowse link
nuclear mRNA surveillance term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dxo decapping exoribonuclease involved_in ISO (MGI:5488528|PMID:23523372) UniProt PMID:23523372 MGI:5488528 NCBI chrNW_004955437:482,866...484,989
Ensembl chrNW_004955437:481,554...484,989
JBrowse link
G Exosc10 exosome component 10 involved_in ISO (PMID:17545563) UniProt PMID:17545563 NCBI chrNW_004955486:2,601,362...2,626,451
Ensembl chrNW_004955486:2,601,322...2,626,876
JBrowse link
G Exosc4 exosome component 4 involved_in ISO (PMID:17545563) UniProt PMID:17545563 NCBI chrNW_004955454:2,732,308...2,734,398
Ensembl chrNW_004955454:2,732,308...2,734,398
JBrowse link
G Exosc9 exosome component 9 involved_in ISO (PMID:17545563) UniProt PMID:17545563 NCBI chrNW_004955428:18,732,733...18,743,743
Ensembl chrNW_004955428:18,731,919...18,743,756
JBrowse link
G Xrn1 5'-3' exoribonuclease 1 involved_in ISO (PMID:17545563) UniProt PMID:17545563 NCBI chrNW_004955508:3,441,540...3,561,896
Ensembl chrNW_004955508:3,441,683...3,561,805
JBrowse link
nuclear polyadenylation-dependent mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 involved_in ISO (PMID:16934922) UniProt PMID:16934922 NCBI chrNW_004955424:27,407,451...27,449,830
Ensembl chrNW_004955424:27,407,489...27,448,992
JBrowse link
nuclear polyadenylation-dependent rRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Exosc10 exosome component 10 involved_in ISO (PMID:16455498) UniProt PMID:16455498 NCBI chrNW_004955486:2,601,362...2,626,451
Ensembl chrNW_004955486:2,601,322...2,626,876
JBrowse link
G Exosc9 exosome component 9 involved_in ISO (PMID:16455498) UniProt PMID:16455498 NCBI chrNW_004955428:18,732,733...18,743,743
Ensembl chrNW_004955428:18,731,919...18,743,756
JBrowse link
nuclear retention of unspliced pre-mRNA at the site of transcription term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Exosc10 exosome component 10 involved_in ISO (PMID:20699273) UniProt PMID:20699273 NCBI chrNW_004955486:2,601,362...2,626,451
Ensembl chrNW_004955486:2,601,322...2,626,876
JBrowse link
nuclear-transcribed mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ago1 argonaute RISC component 1 involved_in ISO (PMID:18771919) UniProt PMID:18771919 NCBI chrNW_004955452:13,935,028...13,967,281
Ensembl chrNW_004955452:13,934,346...13,968,624
JBrowse link
G Ddx5 DEAD-box helicase 5 involved_in ISO (PMID:23788676) UniProt PMID:23788676 NCBI chrNW_004955478:7,367,049...7,375,043
Ensembl chrNW_004955478:7,366,956...7,376,358
JBrowse link
G Dhx34 DExH-box helicase 34 involved_in ISO (PMID:23828042) UniProt PMID:23828042 NCBI chrNW_004955574:1,248,058...1,267,399
Ensembl chrNW_004955574:1,248,021...1,267,399
JBrowse link
G Exosc10 exosome component 10 involved_in ISO (PMID:17545563) UniProt PMID:17545563 NCBI chrNW_004955486:2,601,362...2,626,451
Ensembl chrNW_004955486:2,601,322...2,626,876
JBrowse link
G Exosc4 exosome component 4 involved_in ISO (PMID:17545563) UniProt PMID:17545563 NCBI chrNW_004955454:2,732,308...2,734,398
Ensembl chrNW_004955454:2,732,308...2,734,398
JBrowse link
G Exosc9 exosome component 9 involved_in ISO (PMID:17545563) UniProt PMID:17545563 NCBI chrNW_004955428:18,732,733...18,743,743
Ensembl chrNW_004955428:18,731,919...18,743,756
JBrowse link
G Nbas NBAS subunit of NRZ tethering complex involved_in ISO (PMID:23828042) UniProt PMID:23828042 NCBI chrNW_004955487:8,894,403...9,073,535
Ensembl chrNW_004955487:8,894,187...9,073,663
JBrowse link
G Ptbp1 polypyrimidine tract binding protein 1 ISO RGD PMID:15039777 RGD:10045958 NCBI chrNW_004955495:6,990,565...7,002,492
Ensembl chrNW_004955495:6,987,182...7,002,492
JBrowse link
G Rc3h1 ring finger and CCCH-type domains 1 involved_in ISO (PMID:25026078)
(MGI:4819285|PMID:20639877)
UniProt
BHF-UCL
PMID:20639877 PMID:25026078 MGI:4819285 NCBI chrNW_004955406:14,053,122...14,123,023
Ensembl chrNW_004955406:14,053,122...14,123,029
JBrowse link
G Thrap3 thyroid hormone receptor associated protein 3 involved_in ISO (PMID:20123736) UniProt PMID:20123736 NCBI chrNW_004955452:14,233,155...14,282,521
Ensembl chrNW_004955452:14,233,155...14,283,886
JBrowse link
G Upf1 UPF1 RNA helicase and ATPase involved_in ISO (PMID:23828042) UniProt PMID:23828042 NCBI chrNW_004955524:2,798,336...2,814,063
Ensembl chrNW_004955524:2,798,336...2,913,176
JBrowse link
G Xrn1 5'-3' exoribonuclease 1 involved_in ISO (PMID:17545563) UniProt PMID:17545563 NCBI chrNW_004955508:3,441,540...3,561,896
Ensembl chrNW_004955508:3,441,683...3,561,805
JBrowse link
nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnot6l CCR4-NOT transcription complex subunit 6 like acts_upstream_of_or_within ISO (MGI:3828348|PMID:17452450) MGI PMID:17452450 MGI:3828348 NCBI chrNW_004955433:2,206,462...2,290,773
Ensembl chrNW_004955433:2,213,444...2,316,049
JBrowse link
G Pde12 phosphodiesterase 12 involved_in ISO (PMID:21245038) UniProt PMID:21245038 NCBI chrNW_004955430:7,272,911...7,277,726
Ensembl chrNW_004955430:7,272,765...7,277,726
JBrowse link
G Rc3h1 ring finger and CCCH-type domains 1 involved_in ISO (MGI:5706859|PMID:26000482), (MGI:5751631|PMID:26255671) UniProt PMID:26000482 PMID:26255671 MGI:5706859 MGI:5751631 NCBI chrNW_004955406:14,053,122...14,123,023
Ensembl chrNW_004955406:14,053,122...14,123,029
JBrowse link
G Zfp36 ZFP36 ring finger protein involved_in
acts_upstream_of_or_within
ISO (PMID:23644599)
(MGI:3589099|PMID:15814898)
UniProt
MGI
PMID:15814898 PMID:23644599 MGI:3589099 NCBI chrNW_004955468:152,744...155,140
Ensembl chrNW_004955468:152,744...155,140
JBrowse link
G Zfp36l1 ZFP36 ring finger protein like 1 acts_upstream_of_or_within ISO (MGI:3589099|PMID:15814898) MGI PMID:15814898 MGI:3589099 NCBI chrNW_004955466:1,541,367...1,546,617
Ensembl chrNW_004955466:1,541,323...1,546,617
JBrowse link
G Zfp36l2 ZFP36 ring finger protein like 2 acts_upstream_of_or_within ISO (MGI:3589099|PMID:15814898) MGI PMID:15814898 MGI:3589099 NCBI chrNW_004955441:10,467,608...10,469,885 JBrowse link
nuclear-transcribed mRNA catabolic process, deadenylation-independent decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Zfp36 ZFP36 ring finger protein involved_in ISO (PMID:11279239) UniProt PMID:11279239 NCBI chrNW_004955468:152,744...155,140
Ensembl chrNW_004955468:152,744...155,140
JBrowse link
G Zfp36l1 ZFP36 ring finger protein like 1 involved_in ISO PMID:11279239 UniProt PMID:11279239 RGD:11344953 NCBI chrNW_004955466:1,541,367...1,546,617
Ensembl chrNW_004955466:1,541,323...1,546,617
JBrowse link
nuclear-transcribed mRNA catabolic process, endonucleolytic cleavage-dependent decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Upf1 UPF1 RNA helicase and ATPase involved_in ISO (PMID:26255671) UniProt PMID:26255671 NCBI chrNW_004955524:2,798,336...2,814,063
Ensembl chrNW_004955524:2,798,336...2,913,176
JBrowse link
G Zc3h12a zinc finger CCCH-type containing 12A involved_in ISO (MGI:5751631|PMID:26255671) UniProt PMID:26255671 MGI:5751631 NCBI chrNW_004955452:15,306,398...15,314,959
Ensembl chrNW_004955452:15,305,775...15,314,959
JBrowse link
nuclear-transcribed mRNA catabolic process, exonucleolytic term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dis3l2 DIS3 like 3'-5' exoribonuclease 2 involved_in ISO (PMID:23756462) UniProt PMID:23756462 NCBI chrNW_004955453:3,558,744...3,851,222
Ensembl chrNW_004955453:3,559,067...3,830,064
JBrowse link
nuclear-transcribed mRNA catabolic process, no-go decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnot6 CCR4-NOT transcription complex subunit 6 involved_in ISO (PMID:15314026) UniProt PMID:15314026 NCBI chrNW_004955408:170,399...239,492
Ensembl chrNW_004955408:170,399...218,040
JBrowse link
G Csde1 cold shock domain containing E1 involved_in ISO (PMID:15314026) UniProt PMID:15314026 NCBI chrNW_004955435:18,009,228...18,050,329
Ensembl chrNW_004955435:18,008,352...18,050,329
JBrowse link
G Gtpbp2 GTP binding protein 2 acts_upstream_of_or_within ISO (MGI:5574482|PMID:25061210) MGI PMID:25061210 MGI:5574482 NCBI chrNW_004955437:9,414,128...9,425,671
Ensembl chrNW_004955437:9,412,934...9,424,365
JBrowse link
nuclear-transcribed mRNA catabolic process, nonsense-mediated decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ctif cap binding complex dependent translation initiation factor involved_in ISO (PMID:19648179) UniProt PMID:19648179 NCBI chrNW_004955402:33,706,824...33,986,476
Ensembl chrNW_004955402:33,706,788...33,987,583
JBrowse link
G Eif3e eukaryotic translation initiation factor 3 subunit E involved_in ISO (PMID:17468741) UniProt PMID:17468741 NCBI chrNW_004955417:30,823,555...30,858,975
Ensembl chrNW_004955417:30,822,027...30,858,975
JBrowse link
G Eif4a3 eukaryotic translation initiation factor 4A3 involved_in ISO (PMID:16209946) UniProt PMID:16209946 NCBI chrNW_004955506:2,749,534...2,760,873
Ensembl chrNW_004955506:2,749,534...2,760,873
JBrowse link
G Magoh mago homolog, exon junction complex subunit involved_in ISO (PMID:16209946)
(PMID:23917022)
UniProt
HGNC
PMID:16209946 PMID:23917022 NCBI chrNW_004955464:5,919,289...5,929,152 JBrowse link
G Magohb mago homolog B, exon junction complex subunit involved_in ISO (PMID:23917022) HGNC PMID:23917022 NCBI chrNW_004955413:7,195,078...7,201,659
Ensembl chrNW_004955413:7,194,798...7,201,969
JBrowse link
G Ncbp1 nuclear cap binding protein subunit 1 involved_in ISO (PMID:11551508), (PMID:17873884)
(PMID:18369367)
UniProt PMID:11551508 PMID:17873884 PMID:18369367 NCBI chrNW_004955419:27,778,300...27,819,878
Ensembl chrNW_004955419:27,778,300...27,819,878
JBrowse link
G Ncbp2 nuclear cap binding protein subunit 2 involved_in ISO (PMID:17873884), (PMID:18369367)
(PMID:11551508)
UniProt PMID:11551508 PMID:17873884 PMID:18369367 NCBI chrNW_004955420:12,979,368...12,992,500
Ensembl chrNW_004955420:12,979,368...12,992,500
JBrowse link
G Pnrc2 proline rich nuclear receptor coactivator 2 involved_in ISO (PMID:19150429) UniProt PMID:19150429 NCBI chrNW_004955452:3,826,337...3,829,896 JBrowse link
G Pym1 PYM homolog 1, exon junction complex associated factor involved_in ISO (PMID:19410547) UniProt PMID:19410547 NCBI chrNW_004955458:3,499,217...3,515,108
Ensembl chrNW_004955458:3,498,822...3,514,839
JBrowse link
G Rbm8a RNA binding motif protein 8A involved_in ISO (PMID:16209946) UniProt PMID:16209946 NCBI chrNW_004955568:164,050...166,162
Ensembl chrNW_004955568:164,050...166,162
JBrowse link
G Rnps1 RNA binding protein with serine rich domain 1 involved_in ISO (PMID:16209946)
(PMID:11546874)
UniProt PMID:11546874 PMID:16209946 NCBI chrNW_004955442:14,995,404...15,009,358
Ensembl chrNW_004955442:14,995,404...15,009,358
JBrowse link
G Smg1 SMG1 nonsense mediated mRNA decay associated PI3K related kinase involved_in ISO (PMID:11544179) UniProt PMID:11544179 NCBI chrNW_004955442:2,553,135...2,651,772
Ensembl chrNW_004955442:2,553,143...2,651,772
JBrowse link
G Smg6 SMG6 nonsense mediated mRNA decay factor involved_in ISO (PMID:18974281), (PMID:19060897), (PMID:20930030) UniProt PMID:18974281 PMID:19060897 PMID:20930030 NCBI chrNW_004955481:940,041...1,177,998
Ensembl chrNW_004955481:940,041...1,177,998
JBrowse link
G Smg8 SMG8 nonsense mediated mRNA decay factor involved_in ISO (PMID:19417104) UniProt PMID:19417104 NCBI chrNW_004955451:3,803,325...3,809,055
Ensembl chrNW_004955451:3,803,196...3,809,389
JBrowse link
G Smg9 SMG9 nonsense mediated mRNA decay factor involved_in ISO (PMID:19417104) UniProt PMID:19417104 NCBI chrNW_004955555:1,463,031...1,481,411
Ensembl chrNW_004955555:1,459,451...1,481,411
JBrowse link
G Upf1 UPF1 RNA helicase and ATPase involved_in ISO (PMID:17468741)
(PMID:18369367)
UniProt PMID:17468741 PMID:18369367 NCBI chrNW_004955524:2,798,336...2,814,063
Ensembl chrNW_004955524:2,798,336...2,913,176
JBrowse link
G Upf2 UPF2 regulator of nonsense mediated mRNA decay involved_in ISO (PMID:18369367) UniProt PMID:18369367 NCBI chrNW_004955421:27,867,663...27,962,809
Ensembl chrNW_004955421:27,861,958...27,952,835
JBrowse link
G Upf3a UPF3A regulator of nonsense mediated mRNA decay NOT|involved_in ISO (PMID:16601204) UniProt PMID:16601204 NCBI chrNW_004955404:25,556...36,730 JBrowse link
G Upf3b UPF3B regulator of nonsense mediated mRNA decay involved_in ISO (PMID:16601204)
(PMID:18369367)
UniProt PMID:16601204 PMID:18369367 NCBI chrNW_004955534:176,553...193,033
Ensembl chrNW_004955534:176,522...193,319
JBrowse link
nuclear-transcribed mRNA poly(A) tail shortening term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnot6 CCR4-NOT transcription complex subunit 6 involved_in ISO (PMID:20595389) UniProt PMID:20595389 NCBI chrNW_004955408:170,399...239,492
Ensembl chrNW_004955408:170,399...218,040
JBrowse link
G Cnot7 CCR4-NOT transcription complex subunit 7 acts_upstream_of_or_within ISO (MGI:3807625|PMID:18625844) MGI PMID:18625844 MGI:3807625 NCBI chrNW_004955463:285,228...306,077
Ensembl chrNW_004955463:285,228...306,077
JBrowse link
G Mlh1 mutL homolog 1 acts_upstream_of_or_within ISO (MGI:1934053|PMID:11337385) MGI PMID:11337385 MGI:1934053 NCBI chrNW_004955421:3,890,291...3,936,892
Ensembl chrNW_004955421:3,890,306...3,936,526
JBrowse link
G Parn poly(A)-specific ribonuclease acts_upstream_of_or_within ISO (MGI:3785219|PMID:18337750) MGI PMID:18337750 MGI:3785219 NCBI chrNW_004955442:4,255,726...4,421,083
Ensembl chrNW_004955442:4,258,692...4,422,197
JBrowse link
G Pnldc1 PARN like ribonuclease domain containing exonuclease 1 involved_in ISO (PMID:27515512)
(MGI:5825409|PMID:27515512)
UniProt PMID:27515512 MGI:5825409 NCBI chrNW_004955439:21,039,638...21,058,558
Ensembl chrNW_004955439:21,035,825...21,058,549
JBrowse link
G Zfp36 ZFP36 ring finger protein involved_in
acts_upstream_of_or_within
ISO (PMID:23644599)
(MGI:3589099|PMID:15814898)
BHF-UCL
MGI
PMID:15814898 PMID:23644599 MGI:3589099 NCBI chrNW_004955468:152,744...155,140
Ensembl chrNW_004955468:152,744...155,140
JBrowse link
nucleobase-containing small molecule catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd4 ectonucleoside triphosphate diphosphohydrolase 4 involved_in ISO (PMID:10858452) UniProt PMID:10858452 NCBI chrNW_004955403:46,609,211...46,637,622
Ensembl chrNW_004955403:46,609,211...46,637,643
JBrowse link
G Entpd7 ectonucleoside triphosphate diphosphohydrolase 7 involved_in ISO (PMID:11278936) UniProt PMID:11278936 NCBI chrNW_004955507:5,552,788...5,594,911
Ensembl chrNW_004955507:5,552,764...5,594,911
JBrowse link
nucleoside diphosphate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd3 ectonucleoside triphosphate diphosphohydrolase 3 acts_upstream_of_or_within ISO (MGI:3043501|PMID:15130768) MGI PMID:15130768 MGI:3043501 NCBI chrNW_004955420:29,445,252...29,471,024
Ensembl chrNW_004955420:29,445,909...29,468,709
JBrowse link
nucleoside phosphate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt15 nudix hydrolase 15 involved_in ISO (PMID:26238318)
(PMID:26878724)
UniProt PMID:26238318 PMID:26878724 NCBI chrNW_004955431:1,767,971...1,775,555
Ensembl chrNW_004955431:1,767,525...1,775,555
JBrowse link
nucleoside triphosphate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dctpp1 dCTP pyrophosphatase 1 involved_in ISO (PMID:24467396)
(MGI:3844778|PMID:19220460)
UniProt PMID:19220460 PMID:24467396 MGI:3844778 NCBI chrNW_004955493:7,357,204...7,360,034
Ensembl chrNW_004955493:7,357,204...7,360,034
JBrowse link
G Enpp1 ectonucleotide pyrophosphatase/phosphodiesterase 1 involved_in ISO (PMID:10513816) BHF-UCL PMID:10513816 NCBI chrNW_004955436:12,416,147...12,477,214
Ensembl chrNW_004955436:12,415,737...12,480,359
JBrowse link
G Enpp3 ectonucleotide pyrophosphatase/phosphodiesterase 3 involved_in ISO (PMID:10513816) BHF-UCL PMID:10513816 NCBI chrNW_004955436:12,310,773...12,384,815
Ensembl chrNW_004955436:12,310,765...12,385,197
JBrowse link
G Entpd3 ectonucleoside triphosphate diphosphohydrolase 3 acts_upstream_of_or_within ISO (MGI:3043501|PMID:15130768) MGI PMID:15130768 MGI:3043501 NCBI chrNW_004955420:29,445,252...29,471,024
Ensembl chrNW_004955420:29,445,909...29,468,709
JBrowse link
G Smpdl3a sphingomyelin phosphodiesterase acid like 3A involved_in ISO (PMID:26783088) UniProt PMID:26783088 NCBI chrNW_004955436:4,655,730...4,663,993
Ensembl chrNW_004955436:4,655,732...4,663,638
JBrowse link
polyuridylation-dependent mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tut4 terminal uridylyl transferase 4 involved_in ISO (MGI:6162305|PMID:28792939) UniProt PMID:28792939 MGI:6162305 NCBI chrNW_004955464:6,610,350...6,734,606
Ensembl chrNW_004955464:6,646,245...6,734,066
JBrowse link
G Tut7 terminal uridylyl transferase 7 involved_in ISO (MGI:6162305|PMID:28792939) UniProt PMID:28792939 MGI:6162305 NCBI chrNW_004955432:1,268,217...1,330,385
Ensembl chrNW_004955432:1,268,103...1,329,436
JBrowse link
positive regulation of 3'-UTR-mediated mRNA stabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Elavl4 ELAV like RNA binding protein 4 involved_in ISO (PMID:18218628) UniProt PMID:18218628 NCBI chrNW_004955464:8,699,142...8,847,289
Ensembl chrNW_004955464:8,699,088...8,788,878
JBrowse link
G Larp4b La ribonucleoprotein 4B involved_in ISO (PMID:26001795) FlyBase PMID:26001795 NCBI chrNW_004955492:113,900...197,753
Ensembl chrNW_004955492:138,374...193,145
JBrowse link
G Rbm24 RNA binding motif protein 24 involved_in ISO (PMID:24356969) UniProt PMID:24356969 NCBI chrNW_004955483:8,705,533...8,716,772
Ensembl chrNW_004955483:8,705,213...8,716,778
JBrowse link
G Tent4a terminal nucleotidyltransferase 4A involved_in ISO (PMID:30026317) UniProt PMID:30026317 NCBI chrNW_004955504:4,443,051...4,476,373
Ensembl chrNW_004955504:4,443,051...4,476,520
JBrowse link
G Tent4b terminal nucleotidyltransferase 4B involved_in ISO (PMID:30026317) UniProt PMID:30026317 NCBI chrNW_004955433:8,288,432...8,347,347
Ensembl chrNW_004955433:8,288,432...8,347,347
JBrowse link
positive regulation of apoptotic DNA fragmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Bax BCL2 associated X, apoptosis regulator involved_in ISO (PMID:11350920) BHF-UCL PMID:11350920 NCBI chrNW_004955559:1,695,960...1,700,246
Ensembl chrNW_004955559:1,695,960...1,700,244
JBrowse link
G Endog endonuclease G ISO RGD PMID:16407272 RGD:9685355 NCBI chrNW_004955570:1,200,461...1,203,566
Ensembl chrNW_004955570:1,200,996...1,203,566
JBrowse link
G Hsf1 heat shock transcription factor 1 ISO RGD PMID:21192280 RGD:10403035 NCBI chrNW_004955454:2,907,265...2,932,352
Ensembl chrNW_004955454:2,907,265...2,932,351
JBrowse link
G Igfbp3 insulin like growth factor binding protein 3 ISO RGD PMID:15125883 RGD:10402776 NCBI chrNW_004955456:6,795,560...6,802,147
Ensembl chrNW_004955456:6,795,604...6,800,845
JBrowse link
G Il6 interleukin 6 involved_in ISO (PMID:28433754) ARUK-UCL PMID:28433754 NCBI chrNW_004955410:25,079,835...25,084,390 JBrowse link
positive regulation of deadenylation-independent decapping of nuclear-transcribed mRNA term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Zfp36 ZFP36 ring finger protein involved_in ISO (PMID:16364915) UniProt PMID:16364915 NCBI chrNW_004955468:152,744...155,140
Ensembl chrNW_004955468:152,744...155,140
JBrowse link
positive regulation of DNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atm ATM serine/threonine kinase ISO RGD PMID:27895165 RGD:12879393 NCBI chrNW_004955412:10,422,753...10,531,406
Ensembl chrNW_004955412:10,426,135...10,530,545
JBrowse link
positive regulation of miRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Lin28b lin-28 homolog B involved_in ISO (PMID:18951094) CACAO PMID:18951094 NCBI chrNW_004955411:30,381,208...30,499,678 JBrowse link
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 involved_in ISO (PMID:20547861) UniProt PMID:20547861 NCBI chrNW_004955424:27,407,451...27,449,830
Ensembl chrNW_004955424:27,407,489...27,448,992
JBrowse link
G Zc3h12a zinc finger CCCH-type containing 12A involved_in ISO (PMID:22055188), (PMID:24048733) UniProt PMID:22055188 PMID:24048733 NCBI chrNW_004955452:15,306,398...15,314,959
Ensembl chrNW_004955452:15,305,775...15,314,959
JBrowse link
G Zswim8 zinc finger SWIM-type containing 8 involved_in ISO (PMID:33184234), (PMID:33184237)
(MGI:6508520|PMID:33184237)
UniProt PMID:33184234 PMID:33184237 MGI:6508520 NCBI chrNW_004955437:18,099,416...18,113,936
Ensembl chrNW_004955437:18,099,589...18,114,726
JBrowse link
positive regulation of mitochondrial RNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Grsf1 G-rich RNA sequence binding factor 1 involved_in ISO (PMID:29967381) UniProt PMID:29967381 NCBI chrNW_004955447:2,181,841...2,194,650
Ensembl chrNW_004955447:2,181,839...2,194,650
JBrowse link
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 involved_in ISO (PMID:19509288), (PMID:29967381) UniProt PMID:19509288 PMID:29967381 NCBI chrNW_004955424:27,407,451...27,449,830
Ensembl chrNW_004955424:27,407,489...27,448,992
JBrowse link
G Supv3l1 Suv3 like RNA helicase involved_in ISO (PMID:19509288), (PMID:29967381)
(PMID:19864255)
UniProt PMID:19509288 PMID:19864255 PMID:29967381 NCBI chrNW_004955437:21,880,778...21,905,540
Ensembl chrNW_004955437:21,877,666...21,906,362
JBrowse link
positive regulation of mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cnot1 CCR4-NOT transcription complex subunit 1 involved_in ISO (PMID:22977175) BHF-UCL PMID:22977175 NCBI chrNW_004955433:15,938,791...16,027,547
Ensembl chrNW_004955433:15,938,791...16,027,545
JBrowse link
G Cnot7 CCR4-NOT transcription complex subunit 7 involved_in ISO (PMID:23386060), (PMID:25038453) UniProt PMID:23386060 PMID:25038453 NCBI chrNW_004955463:285,228...306,077
Ensembl chrNW_004955463:285,228...306,077
JBrowse link
G Cnot8 CCR4-NOT transcription complex subunit 8 involved_in ISO (PMID:22977175) BHF-UCL PMID:22977175 NCBI chrNW_004955408:9,112,208...9,132,650
Ensembl chrNW_004955408:9,112,208...9,132,758
JBrowse link
G Gtpbp1 GTP binding protein 1 involved_in ISO PMID:21515746 UniProt PMID:21515746 RGD:8553842 NCBI chrNW_004955413:24,823,113...24,849,522
Ensembl chrNW_004955413:24,823,113...24,852,691
JBrowse link
G Hnrnpr heterogeneous nuclear ribonucleoprotein R ISO RGD PMID:15798208 RGD:9854643 NCBI chrNW_004955452:3,318,536...3,354,725
Ensembl chrNW_004955452:3,315,133...3,355,508
JBrowse link
G Khsrp KH-type splicing regulatory protein involved_in ISO (PMID:16126846) UniProt PMID:16126846 NCBI chrNW_004955495:3,183,083...3,194,356
Ensembl chrNW_004955495:3,183,179...3,193,376
JBrowse link
G Mov10 Mov10 RISC complex RNA helicase involved_in ISO (PMID:24726324) UniProt PMID:24726324 NCBI chrNW_004955435:16,093,471...16,114,735
Ensembl chrNW_004955435:16,092,790...16,117,206
JBrowse link
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 involved_in ISO (PMID:16410805) RGD
UniProt
PMID:737213 PMID:16410805 RGD:11554176 NCBI chrNW_004955424:27,407,451...27,449,830
Ensembl chrNW_004955424:27,407,489...27,448,992
JBrowse link
G Prr5l proline rich 5 like involved_in ISO (PMID:21964062) UniProt PMID:21964062 NCBI chrNW_004955422:9,972,588...10,069,411
Ensembl chrNW_004955422:9,972,588...10,048,669
JBrowse link
G Rc3h1 ring finger and CCCH-type domains 1 involved_in ISO (MGI:6154479|PMID:25026077)
(MGI:5706859|PMID:26000482), (MGI:5751631|PMID:26255671)
UniProt PMID:25026077 PMID:26000482 PMID:26255671 MGI:5706859 MGI:5751631 MGI:6154479 NCBI chrNW_004955406:14,053,122...14,123,023
Ensembl chrNW_004955406:14,053,122...14,123,029
JBrowse link
G Upf1 UPF1 RNA helicase and ATPase involved_in ISO (PMID:24726324)
(PMID:25225333), (PMID:26255671)
UniProt PMID:24726324 PMID:25225333 PMID:26255671 NCBI chrNW_004955524:2,798,336...2,814,063
Ensembl chrNW_004955524:2,798,336...2,913,176
JBrowse link
G Zc3h12a zinc finger CCCH-type containing 12A involved_in ISO (PMID:19909337)
(MGI:3842851|PMID:19322177), (MGI:5706859|PMID:26000482), (MGI:5706909|PMID:23185455), (MGI:5751631|PMID:26255671)
UniProt PMID:19322177 PMID:19909337 PMID:23185455 PMID:26000482 PMID:26255671 MGI:3842851 MGI:5706859 MGI:5706909 MGI:5751631 NCBI chrNW_004955452:15,306,398...15,314,959
Ensembl chrNW_004955452:15,305,775...15,314,959
JBrowse link
G Zc3hav1 zinc finger CCCH-type containing, antiviral 1 involved_in ISO PMID:17185417
(PMID:21876179)
UniProt PMID:17185417 PMID:21876179 RGD:8553432 NCBI chrNW_004955494:3,925,478...3,985,469
Ensembl chrNW_004955494:3,926,413...3,983,736
JBrowse link
G Zfp36 ZFP36 ring finger protein involved_in ISO (MGI:5795825|PMID:15634918) UniProt PMID:15634918 MGI:5795825 NCBI chrNW_004955468:152,744...155,140
Ensembl chrNW_004955468:152,744...155,140
JBrowse link
positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ago2 argonaute RISC catalytic component 2 involved_in ISO (MGI:5486537|PMID:19716330) UniProt PMID:19716330 MGI:5486537 NCBI chrNW_004955461:14,194,268...14,260,949
Ensembl chrNW_004955461:14,205,748...14,253,861
JBrowse link
G Cnot1 CCR4-NOT transcription complex subunit 1 involved_in ISO (PMID:21278420) UniProt PMID:21278420 NCBI chrNW_004955433:15,938,791...16,027,547
Ensembl chrNW_004955433:15,938,791...16,027,545
JBrowse link
G Cnot7 CCR4-NOT transcription complex subunit 7 involved_in ISO (PMID:21278420)
(MGI:5486537|PMID:19716330)
UniProt PMID:19716330 PMID:21278420 MGI:5486537 NCBI chrNW_004955463:285,228...306,077
Ensembl chrNW_004955463:285,228...306,077
JBrowse link
G Cpeb3 cytoplasmic polyadenylation element binding protein 3 involved_in ISO (PMID:21336257) UniProt PMID:21336257 NCBI chrNW_004955425:1,032,446...1,224,300
Ensembl chrNW_004955425:1,057,575...1,224,300
JBrowse link
G Dhx36 DEAH-box helicase 36 involved_in ISO (PMID:14731398) UniProt PMID:14731398 NCBI chrNW_004955448:5,634,072...5,676,272
Ensembl chrNW_004955448:5,634,072...5,676,319
JBrowse link
G Nanos1 nanos C2HC-type zinc finger 1 involved_in ISO (PMID:24736845) BHF-UCL PMID:24736845 NCBI chrNW_004955431:23,538,224...23,540,039
Ensembl chrNW_004955431:23,538,242...23,539,051
JBrowse link
G Nanos2 nanos C2HC-type zinc finger 2 involved_in ISO (PMID:24736845) BHF-UCL PMID:24736845 NCBI chrNW_004955574:333,007...333,529
Ensembl chrNW_004955574:333,116...333,529
JBrowse link
G Nanos3 nanos C2HC-type zinc finger 3 involved_in ISO (PMID:24736845) BHF-UCL PMID:24736845 NCBI chrNW_004955415:32,648,455...32,651,909
Ensembl chrNW_004955415:32,649,054...32,651,936
JBrowse link
G Pabpc1 poly(A) binding protein cytoplasmic 1 involved_in ISO (MGI:5486537|PMID:19716330) UniProt PMID:19716330 MGI:5486537 NCBI chrNW_004955417:15,872,906...15,885,246
Ensembl chrNW_004955417:15,868,934...15,885,247
JBrowse link
G Tnrc6b trinucleotide repeat containing adaptor 6B involved_in ISO (PMID:19716330) UniProt PMID:19716330 NCBI chrNW_004955413:25,820,428...26,060,681
Ensembl chrNW_004955413:25,886,077...26,048,546
JBrowse link
G Tnrc6c trinucleotide repeat containing adaptor 6C involved_in ISO (PMID:21984185) UniProt PMID:21984185 NCBI chrNW_004955506:4,440,555...4,579,642
Ensembl chrNW_004955506:4,440,555...4,559,070
JBrowse link
G Tob1 transducer of ERBB2, 1 involved_in ISO (PMID:21336257) UniProt PMID:21336257 NCBI chrNW_004955451:10,950,270...10,963,183 JBrowse link
G Zfp36 ZFP36 ring finger protein involved_in ISO (PMID:12748283)
(MGI:5487524|PMID:21278420)
UniProt PMID:12748283 PMID:21278420 MGI:5487524 NCBI chrNW_004955468:152,744...155,140
Ensembl chrNW_004955468:152,744...155,140
JBrowse link
G Zfp36l1 ZFP36 ring finger protein like 1 involved_in ISO PMID:12748283 UniProt PMID:12748283 RGD:11344945 NCBI chrNW_004955466:1,541,367...1,546,617
Ensembl chrNW_004955466:1,541,323...1,546,617
JBrowse link
G Zfp36l2 ZFP36 ring finger protein like 2 involved_in ISO (MGI:5320815|PMID:22367205) UniProt PMID:22367205 MGI:5320815 NCBI chrNW_004955441:10,467,608...10,469,885 JBrowse link
positive regulation of nuclear-transcribed mRNA poly(A) tail shortening term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ago2 argonaute RISC catalytic component 2 involved_in ISO (MGI:5486537|PMID:19716330) UniProt PMID:19716330 MGI:5486537 NCBI chrNW_004955461:14,194,268...14,260,949
Ensembl chrNW_004955461:14,205,748...14,253,861
JBrowse link
G Btg2 BTG anti-proliferation factor 2 acts_upstream_of_or_within ISO (PMID:18337750) MGI PMID:18337750 NCBI chrNW_004955406:39,303,221...39,307,308
Ensembl chrNW_004955406:39,303,175...39,308,778
JBrowse link
G Cnot1 CCR4-NOT transcription complex subunit 1 involved_in ISO (PMID:23644599)
(PMID:21278420)
BHF-UCL
UniProt
PMID:21278420 PMID:23644599 NCBI chrNW_004955433:15,938,791...16,027,547
Ensembl chrNW_004955433:15,938,791...16,027,545
JBrowse link
G Cnot7 CCR4-NOT transcription complex subunit 7 involved_in ISO (PMID:21278420)
(MGI:5486537|PMID:19716330)
UniProt PMID:19716330 PMID:21278420 MGI:5486537 NCBI chrNW_004955463:285,228...306,077
Ensembl chrNW_004955463:285,228...306,077
JBrowse link
G Cpeb3 cytoplasmic polyadenylation element binding protein 3 involved_in ISO (PMID:21336257) UniProt PMID:21336257 NCBI chrNW_004955425:1,032,446...1,224,300
Ensembl chrNW_004955425:1,057,575...1,224,300
JBrowse link
G Eif4enif1 eukaryotic translation initiation factor 4E nuclear import factor 1 involved_in ISO (PMID:32354837) UniProt PMID:32354837 NCBI chrNW_004955455:5,612,087...5,660,543
Ensembl chrNW_004955455:5,611,093...5,660,104
JBrowse link
G Pabpc1 poly(A) binding protein cytoplasmic 1 involved_in ISO (MGI:5486537|PMID:19716330) UniProt PMID:19716330 MGI:5486537 NCBI chrNW_004955417:15,872,906...15,885,246
Ensembl chrNW_004955417:15,868,934...15,885,247
JBrowse link
G Tnrc6b trinucleotide repeat containing adaptor 6B involved_in ISO (PMID:19716330) UniProt PMID:19716330 NCBI chrNW_004955413:25,820,428...26,060,681
Ensembl chrNW_004955413:25,886,077...26,048,546
JBrowse link
G Tnrc6c trinucleotide repeat containing adaptor 6C involved_in ISO (PMID:21984185) UniProt PMID:21984185 NCBI chrNW_004955506:4,440,555...4,579,642
Ensembl chrNW_004955506:4,440,555...4,559,070
JBrowse link
G Tob1 transducer of ERBB2, 1 involved_in ISO (PMID:21336257) UniProt PMID:21336257 NCBI chrNW_004955451:10,950,270...10,963,183 JBrowse link
G Zfp36 ZFP36 ring finger protein involved_in ISO (PMID:10330172)
(MGI:5795819|PMID:20595389)
(MGI:5487524|PMID:21278420)
UniProt PMID:10330172 PMID:20595389 PMID:21278420 MGI:5487524 MGI:5795819 NCBI chrNW_004955468:152,744...155,140
Ensembl chrNW_004955468:152,744...155,140
JBrowse link
pre-mRNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Zpr1 ZPR1 zinc finger involved_in ISO (PMID:11283611) UniProt PMID:11283611 NCBI chrNW_004955412:18,117,957...18,127,552
Ensembl chrNW_004955412:18,116,531...18,127,552
JBrowse link
propionyl-CoA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt7 nudix hydrolase 7 involved_in ISO (MGI:6450264|PMID:18799520) UniProt PMID:18799520 MGI:6450264 NCBI chrNW_004955522:945,186...960,094
Ensembl chrNW_004955522:944,565...960,244
JBrowse link
purine deoxyribonucleoside triphosphate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt15 nudix hydrolase 15 acts_upstream_of_or_within ISO (MGI:2663996|PMID:12767940) MGI PMID:12767940 MGI:2663996 NCBI chrNW_004955431:1,767,971...1,775,555
Ensembl chrNW_004955431:1,767,525...1,775,555
JBrowse link
purine nucleobase catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dpyd dihydropyrimidine dehydrogenase involved_in ISO (PMID:11988088) UniProt PMID:11988088 NCBI chrNW_004955435:2,007,185...2,800,907
Ensembl chrNW_004955435:2,007,185...2,766,138
JBrowse link
purine nucleoside monophosphate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nt5c1a 5'-nucleotidase, cytosolic IA acts_upstream_of_or_within ISO (MGI:5295913|PMID:21873433) MGI PMID:21873433 MGI:5295913 NCBI chrNW_004955452:17,172,217...17,188,597
Ensembl chrNW_004955452:17,172,217...17,188,756
JBrowse link
purine nucleotide catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt15 nudix hydrolase 15 involved_in ISO (PMID:26878724) UniProt PMID:26878724 NCBI chrNW_004955431:1,767,971...1,775,555
Ensembl chrNW_004955431:1,767,525...1,775,555
JBrowse link
purine ribonucleoside catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Enpp4 ectonucleotide pyrophosphatase/phosphodiesterase 4 involved_in ISO (PMID:22995898) UniProt PMID:22995898 NCBI chrNW_004955437:11,169,778...11,187,544
Ensembl chrNW_004955437:11,169,778...11,188,156
JBrowse link
purine ribonucleoside diphosphate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Entpd1 ectonucleoside triphosphate diphosphohydrolase 1 acts_upstream_of_or_within ISO (MGI:2178511|PMID:11929769) MGI PMID:11929769 MGI:2178511 NCBI chrNW_004955507:2,035,918...2,141,327
Ensembl chrNW_004955507:2,036,050...2,137,377
JBrowse link
G Entpd2 ectonucleoside triphosphate diphosphohydrolase 2 acts_upstream_of_or_within ISO (MGI:2178511|PMID:11929769) MGI PMID:11929769 MGI:2178511 NCBI chrNW_004955513:5,070,050...5,075,098
Ensembl chrNW_004955513:5,068,875...5,075,098
JBrowse link
purine ribonucleotide catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Hint1 histidine triad nucleotide binding protein 1 involved_in ISO (PMID:16835243) UniProt PMID:16835243 NCBI chrNW_004955408:2,673,950...2,678,528
Ensembl chrNW_004955408:2,674,109...2,678,528
JBrowse link
pyridoxal phosphate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Pdxp pyridoxal phosphatase involved_in ISO (PMID:14522954), (PMID:8132548)
(MGI:5545856|PMID:24338687), (MGI:5545857|PMID:24338473), (MGI:6695679|PMID:25783190)
UniProt PMID:8132548 PMID:14522954 PMID:24338473 PMID:24338687 PMID:25783190 MGI:5545856 MGI:5545857 MGI:6695679 NCBI chrNW_004955413:24,055,900...24,063,902 JBrowse link
pyrimidine deoxyribonucleotide catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nt5c 5', 3'-nucleotidase, cytosolic involved_in ISO (PMID:10681516) UniProt PMID:10681516 NCBI chrNW_004955553:2,011,549...2,014,209
Ensembl chrNW_004955553:2,011,738...2,013,443
JBrowse link
pyrimidine nucleobase catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dpyd dihydropyrimidine dehydrogenase acts_upstream_of_or_within
involved_in
ISO (MGI:2657070|PMID:12651209)
(PMID:11988088)
RGD
MGI
UniProt
PMID:1629785 PMID:11988088 PMID:12651209 MGI:2657070 RGD:1599794 NCBI chrNW_004955435:2,007,185...2,800,907
Ensembl chrNW_004955435:2,007,185...2,766,138
JBrowse link
G Dpys dihydropyrimidinase involved_in ISO (PMID:9718352) UniProt PMID:9718352 NCBI chrNW_004955417:28,183,771...28,244,309
Ensembl chrNW_004955417:28,185,407...28,244,307
JBrowse link
pyrimidine nucleoside catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Upb1 beta-ureidopropionase 1 involved_in ISO (PMID:22525402) UniProt PMID:22525402 NCBI chrNW_004955455:7,961,296...7,992,235
Ensembl chrNW_004955455:7,961,264...7,995,946
JBrowse link
quinolinate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Qprt quinolinate phosphoribosyltransferase involved_in
acts_upstream_of_or_within
ISO (PMID:24038671), (PMID:3409840), (PMID:9473669)
(PMID:9473669)
UniProt
MGI
PMID:3409840 PMID:9473669 PMID:24038671 NCBI chrNW_004955493:7,225,472...7,243,078
Ensembl chrNW_004955493:7,224,983...7,242,852
JBrowse link
regulation of apoptotic DNA fragmentation term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aifm1 apoptosis inducing factor mitochondria associated 1 acts_upstream_of_or_within ISO (MGI:3577148|PMID:15703386) MGI PMID:15703386 MGI:3577148 NCBI chrNW_004955473:4,891,955...4,925,705
Ensembl chrNW_004955473:4,891,955...4,926,428
JBrowse link
G Apaf1 apoptotic peptidase activating factor 1 acts_upstream_of_or_within ISO (MGI:3577148|PMID:15703386) MGI PMID:15703386 MGI:3577148 NCBI chrNW_004955405:34,619,780...34,693,616
Ensembl chrNW_004955405:34,623,267...34,693,677
JBrowse link
G Cidea cell death inducing DFFA like effector a involved_in ISO (MGI:1203887|PMID:9564035) BHF-UCL PMID:9564035 MGI:1203887 NCBI chrNW_004955402:1,090,372...1,096,621
Ensembl chrNW_004955402:1,090,518...1,096,569
JBrowse link
regulation of mitochondrial mRNA stability term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Fastkd1 FAST kinase domains 1 involved_in ISO (PMID:28335001) UniProt PMID:28335001 NCBI chrNW_004955449:4,974,131...5,018,426
Ensembl chrNW_004955449:4,977,520...5,018,178
JBrowse link
G Fastkd3 FAST kinase domains 3 involved_in ISO (PMID:27789713) UniProt PMID:27789713 NCBI chrNW_004955504:5,401,956...5,412,216
Ensembl chrNW_004955504:5,400,544...5,411,401
JBrowse link
G Pde12 phosphodiesterase 12 involved_in ISO (PMID:21666256) UniProt PMID:21666256 NCBI chrNW_004955430:7,272,911...7,277,726
Ensembl chrNW_004955430:7,272,765...7,277,726
JBrowse link
G Tbrg4 transforming growth factor beta regulator 4 involved_in ISO (PMID:28335001) UniProt PMID:28335001 NCBI chrNW_004955456:7,197,690...7,207,102
Ensembl chrNW_004955456:7,199,560...7,208,808
JBrowse link
regulation of mRNA stability term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alkbh5 alkB homolog 5, RNA demethylase involved_in ISO (MGI:6111276|PMID:29279410) UniProt PMID:29279410 MGI:6111276 NCBI chrNW_004955478:11,104,445...11,128,980
Ensembl chrNW_004955478:11,105,920...11,128,222
JBrowse link
G Apex1 apurinic/apyrimidinic endodeoxyribonuclease 1 involved_in ISO (PMID:19401441) UniProt PMID:19401441 NCBI chrNW_004955550:1,273,170...1,275,843
Ensembl chrNW_004955550:1,273,284...1,279,743
JBrowse link
G Brf1 BRF1 RNA polymerase III transcription initiation factor subunit acts_upstream_of_or_within ISO (MGI:3037407|PMID:14976220) MGI PMID:14976220 MGI:3037407 NCBI chrNW_004955538:3,469,322...3,544,704
Ensembl chrNW_004955538:3,470,249...3,544,704
JBrowse link
G Cacng7 calcium voltage-gated channel auxiliary subunit gamma 7 ISO RGD PMID:18923037 RGD:13524564 NCBI chrNW_004955604:242,627...260,594
Ensembl chrNW_004955604:241,170...260,594
JBrowse link
G Calcr calcitonin receptor acts_upstream_of_or_within ISO (MGI:85609|PMID:9002981) MGI PMID:9002981 MGI:85609 NCBI chrNW_004955432:10,310,776...10,391,029
Ensembl chrNW_004955432:10,309,263...10,391,141
JBrowse link
G Carhsp1 calcium regulated heat stable protein 1 involved_in ISO (MGI:5320273|PMID:21078874) UniProt PMID:21078874 MGI:5320273 NCBI chrNW_004955442:9,382,360...9,388,414
Ensembl chrNW_004955442:9,382,354...9,388,414
JBrowse link
G Dcp2 decapping mRNA 2 involved_in ISO (PMID:28002401) UniProt PMID:28002401 NCBI chrNW_004955408:32,868,184...32,923,788
Ensembl chrNW_004955408:32,868,184...32,916,807
JBrowse link
G Dhx36 DEAH-box helicase 36 involved_in ISO (PMID:18279852) UniProt PMID:18279852 NCBI chrNW_004955448:5,634,072...5,676,272
Ensembl chrNW_004955448:5,634,072...5,676,319
JBrowse link
G Elavl4 ELAV like RNA binding protein 4 ISO RGD PMID:22736542 RGD:9586719 NCBI chrNW_004955464:8,699,142...8,847,289
Ensembl chrNW_004955464:8,699,088...8,788,878
JBrowse link
G Fmr1 FMRP translational regulator 1 involved_in ISO (MGI:3710908|PMID:17417632) UniProt PMID:17417632 MGI:3710908 NCBI chrNW_004955498:566,741...594,837
Ensembl chrNW_004955498:566,688...595,360
JBrowse link
G Hnrnpd heterogeneous nuclear ribonucleoprotein D acts_upstream_of_or_within ISO (MGI:3037407|PMID:14976220) MGI PMID:14976220 MGI:3037407 NCBI chrNW_004955433:6,452,931...6,470,209
Ensembl chrNW_004955433:6,454,454...6,469,904
JBrowse link
G Khsrp KH-type splicing regulatory protein involved_in ISO (PMID:16126846) UniProt PMID:16126846 NCBI chrNW_004955495:3,183,083...3,194,356
Ensembl chrNW_004955495:3,183,179...3,193,376
JBrowse link
G Pabpc4 poly(A) binding protein cytoplasmic 4 acts_upstream_of_or_within ISO (MGI:5585232|PMID:24469397) MGI PMID:24469397 MGI:5585232 NCBI chrNW_004955452:17,083,679...17,101,436
Ensembl chrNW_004955452:17,084,805...17,101,026
JBrowse link
G Pcbp4 poly(rC) binding protein 4 acts_upstream_of_or_within ISO (PMID:20817677) MGI PMID:20817677 NCBI chrNW_004955532:3,604,720...3,615,112
Ensembl chrNW_004955532:3,603,975...3,614,290
JBrowse link
G Pcid2 PCI domain containing 2 involved_in ISO (PMID:20870947) UniProt PMID:20870947 NCBI chrNW_004955404:618,092...639,424
Ensembl chrNW_004955404:618,092...639,704
JBrowse link
G Pum1 pumilio RNA binding family member 1 involved_in ISO (PMID:26724866) UniProt PMID:26724866 NCBI chrNW_004955452:9,487,725...9,623,565
Ensembl chrNW_004955452:9,487,725...9,624,066
JBrowse link
G Pum2 pumilio RNA binding family member 2 involved_in ISO (PMID:26724866) UniProt PMID:26724866 NCBI chrNW_004955469:2,810,825...2,886,911
Ensembl chrNW_004955469:2,810,573...2,886,611
JBrowse link
G Rbm24 RNA binding motif protein 24 involved_in ISO (MGI:4999688|PMID:20977548) UniProt PMID:20977548 MGI:4999688 NCBI chrNW_004955483:8,705,533...8,716,772
Ensembl chrNW_004955483:8,705,213...8,716,778
JBrowse link
G Rc3h1 ring finger and CCCH-type domains 1 involved_in ISO (MGI:5284769|PMID:18172933) BHF-UCL PMID:18172933 MGI:5284769 NCBI chrNW_004955406:14,053,122...14,123,023
Ensembl chrNW_004955406:14,053,122...14,123,029
JBrowse link
G Rnasel ribonuclease L acts_upstream_of_or_within ISO (MGI:5543366|PMID:22441668) MGI PMID:22441668 MGI:5543366 NCBI chrNW_004955406:21,413,950...21,424,860
Ensembl chrNW_004955406:21,411,980...21,425,052
JBrowse link
G Scgb1a1 secretoglobin family 1A member 1 acts_upstream_of_or_within ISO (MGI:3615741|PMID:15356574) MGI PMID:15356574 MGI:3615741 NCBI chrNW_004955599:688,414...690,644 JBrowse link
G Vim vimentin involved_in ISO (PMID:21746880) UniProt PMID:21746880 NCBI chrNW_004955429:10,708,852...10,716,743
Ensembl chrNW_004955429:10,707,719...10,717,554
JBrowse link
G Ythdf1 YTH N6-methyladenosine RNA binding protein 1 involved_in ISO (PMID:32492408)
(MGI:6490006|PMID:32943573)
UniProt PMID:32492408 PMID:32943573 MGI:6490006 NCBI chrNW_004955528:935,182...951,722
Ensembl chrNW_004955528:935,182...951,722
JBrowse link
G Ythdf2 YTH N6-methyladenosine RNA binding protein 2 involved_in ISO (PMID:32492408)
(MGI:6490006|PMID:32943573)
(PMID:24284625), (PMID:26046440)
UniProt PMID:24284625 PMID:26046440 PMID:32492408 PMID:32943573 MGI:6490006 NCBI chrNW_004955452:7,783,398...7,815,468 JBrowse link
G Ythdf3 YTH N6-methyladenosine RNA binding protein 3 involved_in ISO (PMID:32194978)
(MGI:6490006|PMID:32943573)
(PMID:32492408)
UniProt PMID:32194978 PMID:32492408 PMID:32943573 MGI:6490006 NCBI chrNW_004955444:15,758,596...15,789,979
Ensembl chrNW_004955444:15,758,596...15,789,979
JBrowse link
G Zfp36 ZFP36 ring finger protein involved_in
acts_upstream_of_or_within
ISO (PMID:15187101), (PMID:15634918)
(MGI:3511379|PMID:15467755)
(MGI:5795825|PMID:15634918)
(MGI:5784976|PMID:22701344), (MGI:5795824|PMID:17288565)
(PMID:11719186), (PMID:15687258), (PMID:20702587), (PMID:9703499)
UniProt
MGI
PMID:9703499 PMID:11719186 PMID:15187101 PMID:15467755 PMID:15634918 PMID:15687258 PMID:17288565 PMID:20702587 PMID:22701344 MGI:3511379 MGI:5784976 MGI:5795824 MGI:5795825 NCBI chrNW_004955468:152,744...155,140
Ensembl chrNW_004955468:152,744...155,140
JBrowse link
G Zfp36l1 ZFP36 ring finger protein like 1 involved_in
acts_upstream_of_or_within
ISO PMID:12748283
(PMID:15467755)
(PMID:15538381), (PMID:15687258), (PMID:18326031), (PMID:19179481), (PMID:20702587), (PMID:24700863), (PMID:25014217), (PMID:26542173)
(MGI:4818820|PMID:20622884), (MGI:5784967|PMID:24733888), (MGI:5784976|PMID:22701344)
(MGI:5784968|PMID:24700863)
PMID:11279239
(PMID:12198173), (PMID:25106868)
UniProt
MGI
PMID:11279239 PMID:12198173 PMID:12748283 PMID:15467755 PMID:15538381 PMID:15687258 PMID:18326031 PMID:19179481 PMID:20622884 PMID:20702587 PMID:22701344 PMID:24700863 PMID:24733888 PMID:25014217 PMID:25106868 PMID:26542173 MGI:4818820 MGI:5784967 MGI:5784968 MGI:5784976 RGD:11344945 RGD:11344953 NCBI chrNW_004955466:1,541,367...1,546,617
Ensembl chrNW_004955466:1,541,323...1,546,617
JBrowse link
G Zfp36l2 ZFP36 ring finger protein like 2 involved_in
acts_upstream_of_or_within
ISO (PMID:25106868)
(MGI:3511379|PMID:15467755)
(MGI:4818820|PMID:20622884), (MGI:5784976|PMID:22701344)
UniProt
MGI
PMID:15467755 PMID:20622884 PMID:22701344 PMID:25106868 MGI:3511379 MGI:4818820 MGI:5784976 NCBI chrNW_004955441:10,467,608...10,469,885 JBrowse link
regulation of mRNA stability involved in cellular response to UV term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Npm1 nucleophosmin 1 involved_in ISO (PMID:12080348) UniProt PMID:12080348 NCBI chrNW_004955408:24,151,070...24,218,783 JBrowse link
regulation of mRNA stability involved in response to stress term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Igf2bp1 insulin like growth factor 2 mRNA binding protein 1 involved_in ISO (PMID:17101699) UniProt PMID:17101699 NCBI chrNW_004955451:12,312,715...12,348,663
Ensembl chrNW_004955451:12,312,715...12,348,663
JBrowse link
regulation of rRNA stability term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ddx49 DEAD-box helicase 49 involved_in ISO (PMID:29618122) CACAO PMID:29618122 NCBI chrNW_004955524:2,760,692...2,767,709
Ensembl chrNW_004955524:2,760,860...2,767,665
JBrowse link
ribonucleoside diphosphate catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nudt5 nudix hydrolase 5 involved_in ISO (PMID:18462755), (PMID:19699693), (PMID:21389046) UniProt PMID:18462755 PMID:19699693 PMID:21389046 NCBI chrNW_004955462:190,872...211,975
Ensembl chrNW_004955462:190,999...203,736
JBrowse link
RNA catabolic process term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Exosc5 exosome component 5 acts_upstream_of_or_within ISO (MGI:5014448|PMID:21670248) MGI PMID:21670248 MGI:5014448 NCBI chrNW_004955555:328,130...334,106
Ensembl chrNW_004955555:326,698...334,106
JBrowse link
G Isg20 interferon stimulated exonuclease gene 20 involved_in ISO (PMID:11401564) UniProt PMID:11401564 NCBI chrNW_004955416:16,305,534...16,321,596
Ensembl chrNW_004955416:16,311,499...16,321,102
JBrowse link
G Mtrex Mtr4 exosome RNA helicase involved_in ISO (PMID:29906447) UniProt PMID:29906447 NCBI chrNW_004955446:12,270,338...12,362,064
Ensembl chrNW_004955446:12,270,344...12,362,882
JBrowse link
G Ncbp1 nuclear cap binding protein subunit 1 involved_in ISO (PMID:25578728) UniProt PMID:25578728 NCBI chrNW_004955419:27,778,300...27,819,878
Ensembl chrNW_004955419:27,778,300...27,819,878
JBrowse link
G Oas2 2'-5'-oligoadenylate synthetase 2 acts_upstream_of_or_within ISO (MGI:3578075|PMID:15865429) MGI PMID:15865429 MGI:3578075 NCBI chrNW_004955482:9,365,400...9,386,314
Ensembl chrNW_004955482:9,364,516...9,386,852
JBrowse link
G Pnpt1 polyribonucleotide nucleotidyltransferase 1 involved_in ISO (PMID:18083836) UniProt PMID:18083836 NCBI chrNW_004955424:27,407,451...27,449,830
Ensembl chrNW_004955424:27,407,489...27,448,992
JBrowse link
G Rnaseh2a ribonuclease H2 subunit A involved_in ISO (PMID:21177858) UniProt PMID:21177858 NCBI chrNW_004955415:31,884,533...31,894,159
Ensembl chrNW_004955415:31,884,533...31,898,433
JBrowse link
G Rnaseh2b ribonuclease H2 subunit B involved_in ISO (PMID:21177858) UniProt PMID:21177858 NCBI chrNW_004955431:4,291,687...4,368,169
Ensembl chrNW_004955431:4,291,688...4,351,178
JBrowse link
G Rnaseh2c ribonuclease H2 subunit C involved_in ISO (PMID:21177858) UniProt PMID:21177858 NCBI chrNW_004955422:19,556,129...19,557,416
Ensembl chrNW_004955422:19,556,396...19,557,307
JBrowse link
G Rnaset2 ribonuclease T2 involved_in ISO (PMID:22735700) UniProt PMID:22735700 NCBI chrNW_004955439:15,098,210...15,122,015 JBrowse link
G Sidt2 SID1 transmembrane family member 2 involved_in ISO (MGI:5908462|PMID:28724756), (MGI:5908512|PMID:27046251) UniProt PMID:27046251 PMID:28724756 MGI:5908462 MGI:5908512 NCBI chrNW_004955412:18,505,453...18,521,667
Ensembl chrNW_004955412:18,505,453...18,522,082
JBrowse link
G Supv3l1 Suv3 like RNA helicase involved_in ISO (PMID:18678873) UniProt PMID:18678873 NCBI chrNW_004955437:21,880,778...21,905,540
Ensembl chrNW_004955437:21,877,666...21,906,362
JBrowse link
RNA destabilization term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dxo decapping exoribonuclease involved_in ISO (MGI:5488528|PMID:23523372) UniProt PMID:23523372 MGI:5488528 NCBI chrNW_004955437:482,866...484,989
Ensembl chrNW_004955437:481,554...484,989
JBrowse link
G Lin28b lin-28 homolog B involved_in ISO (PMID:18951094) CACAO PMID:18951094 NCBI chrNW_004955411:30,381,208...30,499,678 JBrowse link
G Tnfrsf1b TNF receptor superfamily member 1B acts_upstream_of_or_within ISO (MGI:2152007|PMID:11588035) MGI PMID:11588035 MGI:2152007 NCBI chrNW_004955486:1,790,531...1,817,986
Ensembl chrNW_004955486:1,792,115...1,818,362
JBrowse link
G Zc3h18 zinc finger CCCH-type containing 18 involved_in ISO (PMID:28297668) FlyBase PMID:28297668 NCBI chrNW_004955541:2,531,230...2,566,959
Ensembl chrNW_004955541:2,524,499...2,567,203
JBrowse link
G Zfp36 ZFP36 ring finger protein acts_upstream_of_or_within ISO (MGI:2152007|PMID:11588035) MGI PMID:11588035 MGI:2152007 NCBI chrNW_004955468:152,744...155,140
Ensembl chrNW_004955468:152,744...155,140
JBrowse link
RNA stabilization term browser